Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_29 ID=scaffold_29-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  50975

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1061--1218
10
16.5
10
66
22
56
63
2
1
32
1.16
1069--1137
17
4.0
16
77
15
66
63
1
2
31
1.18
1061--1218
9
17.6
9
69
17
66
63
2
1
32
1.16
1061--1218
19
8.3
19
65
17
51
63
2
1
32
1.16
1063--1239
28
6.5
27
73
19
104
62
2
1
33
1.20
1570--1736
10
17.2
10
70
17
86
31
2
2
64
1.19
1631--1734
19
5.2
20
75
12
72
32
0
1
64
1.11
1671--1736
18
3.6
18
74
13
62
28
1
1
68
1.08
5223--5407
101
1.8
100
91
5
309
24
18
27
29
1.98
5218--5414
51
3.9
49
79
5
207
24
18
27
28
1.98
5329--5409
26
3.2
26
61
22
62
24
14
28
32
1.95
5435--5594
33
4.7
33
69
21
98
22
21
26
30
1.99
9316--9352
19
1.9
19
88
0
56
24
5
2
67
1.25
10839--10879
19
2.1
20
95
4
75
9
14
0
75
1.04
11628--11701
25
2.8
25
86
8
103
59
0
2
37
1.12
11645--11766
35
3.6
35
82
15
159
58
0
4
37
1.17
11695--11754
30
2.0
29
87
9
86
55
0
5
40
1.22
20188--20418
46
5.0
46
91
2
374
35
10
26
27
1.89
29742--29775
17
2.0
17
88
0
50
52
0
2
44
1.16
31528--31600
17
4.0
17
75
15
74
36
1
0
61
1.05
31525--31586
9
6.4
9
76
12
52
30
1
0
67
1.00
31592--31630
20
2.0
20
89
0
60
38
2
0
58
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32108--32155
21
2.3
21
75
7
53
25
4
4
66
1.27
32110--32155
22
2.1
21
84
4
56
21
4
4
69
1.24
33132--33184
27
2.0
26
82
13
65
60
1
1
35
1.19
40656--40697
21
2.1
21
86
8
61
47
21
21
9
1.79
43247--43295
24
2.0
25
84
7
66
57
4
6
32
1.42
46496--46668
90
1.9
91
91
4
285
39
9
6
44
1.63

Tables:   1

The End!