Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_285 ID=scaffold_285-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 39702
ACGTcount: A:0.08, C:0.03, G:0.04, T:0.06

Warning! 31045 characters in sequence are not A, C, G, or T


Found at i:11286 original size:21 final size:21

Alignment explanation


    Indices: 11260--11301  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      11250 GTCCTGCAGC

                                  
      11260 ATAAAA-AATCTGAACCGGACA
          1 ATAAAAGAA-CTGAACCGGACA

                                 
      11281 ATAAAAGAACTGAACCGGACA
          1 ATAAAAGAACTGAACCGGACA

      11302 GGGGAAAACC


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  21   18  0.90
  22    2  0.10

ACGTcount: A:0.52, C:0.19, G:0.17, T:0.12


Consensus pattern (21 bp):   
ATAAAAGAACTGAACCGGACA

Found at i:39490 original size:21 final size:21

Alignment explanation


    Indices: 39458--39499  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      39448 TCCTGCAGCA

                                 
      39458 TAAAAAATCTGAACCGGACAC
          1 TAAAAAATCTGAACCGGACAC

                                  
      39479 TAAAAGAA-CTGAACCGGACAC
          1 TAAAA-AATCTGAACCGGACAC

      39500 GTGAAATTCT


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  21   18  0.90
  22    2  0.10

ACGTcount: A:0.48, C:0.24, G:0.17, T:0.12


Consensus pattern (21 bp):   
TAAAAAATCTGAACCGGACAC

Done.