Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_293 ID=scaffold_293-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8539
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34


Found at i:7681 original size:31 final size:31

Alignment explanation


    Indices: 7643--7732  Score: 162
    Period size: 31  Copynumber: 2.9  Consensus size: 31

       7633 TTACCAGTCC

                        *                  
       7643 AGGCTAAATCCCCTGTAATATAAACTCATAG
          1 AGGCTAAATCCCTTGTAATATAAACTCATAG

                                           
       7674 AGGCTAAATCCCTTGTAATATAAACTCATAG
          1 AGGCTAAATCCCTTGTAATATAAACTCATAG

                                *       
       7705 AGGCTAAATCCCTTGTAATACAAACTCA
          1 AGGCTAAATCCCTTGTAATATAAACTCA

       7733 ACATTCAACT


Statistics
Matches: 57,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   57  1.00

ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27


Consensus pattern (31 bp):   
AGGCTAAATCCCTTGTAATATAAACTCATAG
Done.