Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 108 of 150
Found at i:33575864 original size:109 final size:109
Alignment explanation
Indices: 33575712--33576109 Score: 613
Period size: 109 Copynumber: 3.7 Consensus size: 109
33575702 GTCAATCGAG
* * *
33575712 AAATCGAAACCCAACACTTTAGGGCATG-TTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
* * *
33575776 TTGAAATTTTTAAAATGATATTTAGCCATTTGGTTGAATGAGAA
66 TTGAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * * * *
33575820 AAATTGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGTCATATT
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
33575885 TTGAAATTTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTGAAA--TTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
*
33575931 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTACCTT-TC
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTAT-
*
33575995 TTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
65 TTTGAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* *
33576040 AAATCGGCACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTA-T
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
33576104 TTGAAA
66 TTGAAA
33576110 AATTTTTTCG
Statistics
Matches: 263, Mismatches: 22, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
108 29 0.11
109 136 0.52
110 1 0.00
111 97 0.37
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (109 bp):
AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTGAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
Found at i:33576257 original size:18 final size:17
Alignment explanation
Indices: 33576226--33576264 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
33576216 ATATATAATG
*
33576226 AAAAGAAATCAACAAAT
1 AAAAGAAATAAACAAAT
33576243 AAAAGTAAATAAACAAAT
1 AAAAG-AAATAAACAAAT
33576261 AAAA
1 AAAA
33576265 AATTAAAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.74, C:0.08, G:0.05, T:0.13
Consensus pattern (17 bp):
AAAAGAAATAAACAAAT
Found at i:33576586 original size:27 final size:26
Alignment explanation
Indices: 33576510--33576586 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
33576500 GTAAAATATG
*
33576510 TAAAAATATATAA-GTATATATAAGTTA
1 TAAAAATATATAATGTATATAT-A-TCA
* *
33576537 TAAAAA-AAATAATGTATGTATATCA
1 TAAAAATATATAATGTATATATATCA
33576562 TAAAAATATATACATGTATATATAT
1 TAAAAATATATA-ATGTATATATAT
33576587 ATCGAGATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
25 8 0.19
26 10 0.24
27 24 0.57
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (26 bp):
TAAAAATATATAATGTATATATATCA
Found at i:33576629 original size:3 final size:3
Alignment explanation
Indices: 33576621--33576658 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
33576611 AATAAGTAGG
*
33576621 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAC TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
33576659 CTAGAATATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:33577647 original size:109 final size:109
Alignment explanation
Indices: 33577487--33577889 Score: 623
Period size: 109 Copynumber: 3.7 Consensus size: 109
33577477 GTCAATCGAG
* * * *
33577487 AAATCGAAACCCAGCACATTAGGGCATG-TTCCTCGAATTTCCAAACCCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
* * **
33577551 TTGAAATTTTTAAAATGATATTTAGCCATTTGGTTGAATAAGAA
66 TTGAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * * * *
33577595 AAATTGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAATGCAAAACATTGTCATATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
33577660 TTGAAAATTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTG-AAA-TTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
*
33577706 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTACCTT-TC
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTAT-
*
33577770 TTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
65 TTTGAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
33577815 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTA-T
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
33577879 TTGAAATTTTT
66 TTGAAATTTTT
33577890 TTTCGTTTTT
Statistics
Matches: 268, Mismatches: 22, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
108 35 0.13
109 133 0.50
110 7 0.03
111 93 0.35
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (109 bp):
AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTGAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
Found at i:33577868 original size:220 final size:218
Alignment explanation
Indices: 33577487--33577891 Score: 632
Period size: 220 Copynumber: 1.8 Consensus size: 218
33577477 GTCAATCGAG
*
33577487 AAATCGAAACCCAGCACATTAGGGCATGTTCCTCGAATTTCCAAACCCAAAACATTGCCTTATTT
1 AAATCGAAACCCAGCACATTAGGGCATGTTCCTCGAATTTCCAAACCCAAAACATTACCTTATTT
* * * * *
33577552 TGAAATTTTTAAAATGATATTTAGCCATTTGGTTGAATAAGAAAAATTGACACCCAGCACCTTAG
66 TAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACAAGAAAAATCGACACCCAGCACCTTAG
* *
33577617 GGCACGTTTTCTCGAATTTCCAAATGCAAAACATTGTCATATTTTGAAAATTTTTTAAAAGGATA
131 GGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCATA-TTTGAAAATTTTTTAAAAGGATA
33577682 TTAAGCCATTTGGTTGAACGAGAA
195 TTAAGCCATTTGGTTGAACGAGAA
* * * *
33577706 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTACCTT-TC
1 AAATCGAAACCCAGCACATTAGGGCATG-TTCCTCGAATTTCCAAACCCAAAACATTACCTTAT-
*
33577770 TTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTT
64 TTTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACAAGAAAAATCGACACCCAGCACCTT
* * *
33577835 AGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTGAAATTTTTTT
129 AGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCATATTTGAAAATTTTTT
33577892 TCGTTTTTGA
Statistics
Matches: 168, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
219 40 0.24
220 128 0.76
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.32
Consensus pattern (218 bp):
AAATCGAAACCCAGCACATTAGGGCATGTTCCTCGAATTTCCAAACCCAAAACATTACCTTATTT
TAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACAAGAAAAATCGACACCCAGCACCTTAG
GGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCATATTTGAAAATTTTTTAAAAGGATAT
TAAGCCATTTGGTTGAACGAGAA
Found at i:33578032 original size:18 final size:17
Alignment explanation
Indices: 33578001--33578039 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
33577991 ATATATAATG
*
33578001 AAAAGAAATCAACAAAT
1 AAAAGAAATAAACAAAT
33578018 AAAAGTAAATAAACAAAT
1 AAAAG-AAATAAACAAAT
33578036 AAAA
1 AAAA
33578040 AATTAAAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.74, C:0.08, G:0.05, T:0.13
Consensus pattern (17 bp):
AAAAGAAATAAACAAAT
Found at i:33579439 original size:20 final size:20
Alignment explanation
Indices: 33579403--33579441 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33579393 GACGGTGCAA
*
33579403 GTGGCGGTGGTGACGTGACC
1 GTGGCGGTGGCGACGTGACC
*
33579423 GTGGCGGTGGCGGCGTGAC
1 GTGGCGGTGGCGACGTGAC
33579442 ATTGGCAGCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.08, C:0.21, G:0.54, T:0.18
Consensus pattern (20 bp):
GTGGCGGTGGCGACGTGACC
Found at i:33579447 original size:20 final size:20
Alignment explanation
Indices: 33579402--33579447 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
33579392 TGACGGTGCA
*
33579402 AGTGGCGGTGGTGACGTGAC
1 AGTGGCGGTGGCGACGTGAC
* *
33579422 CGTGGCGGTGGCGGCGTGAC
1 AGTGGCGGTGGCGACGTGAC
*
33579442 ATTGGC
1 AGTGGC
33579448 AGCGGTGGCA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.11, C:0.20, G:0.50, T:0.20
Consensus pattern (20 bp):
AGTGGCGGTGGCGACGTGAC
Found at i:33579923 original size:50 final size:50
Alignment explanation
Indices: 33579869--33580230 Score: 285
Period size: 50 Copynumber: 7.3 Consensus size: 50
33579859 ATTCTCCATC
* * *
33579869 GTAGCTTCAATCTGTTCCACTGCATCGCTAGGGAGGTAAGATTCACTGTT
1 GTAGCTTCAATCTATTTCACTGCATCGCTAGGGAGGTAAGATTCACCGTT
* * * * *
33579919 GTAGCTTCAATCTATTTGACTGCAAT-G-TCGGGGAAGAAAGATTCGCCGTT
1 GTAGCTTCAATCTATTTCACTGC-ATCGCT-AGGGAGGTAAGATTCACCGTT
* * * * ***
33579969 GTAGCTTCAATCTATTCCACTGTATCGCTAAGGAGGTGAGATTCATTATT
1 GTAGCTTCAATCTATTTCACTGCATCGCTAGGGAGGTAAGATTCACCGTT
* *
33580019 GTAGCTTCAATCTATTTGACTGCAAT-G-TCGGGGAAGG-AAGATTCACCGTT
1 GTAGCTTCAATCTATTTCACTGC-ATCGCT-AGGG-AGGTAAGATTCACCGTT
* * * ** *
33580069 GTAGCTTCAATCTATTCCACTGCATCGCCAGGGAGGTGAGATTTGCCATT
1 GTAGCTTCAATCTATTTCACTGCATCGCTAGGGAGGTAAGATTCACCGTT
* * * *
33580119 GTGGCTTCAATCTATTTGACTGCAAT-G-TCGGGGAAGG-AAGATTCACTGTT
1 GTAGCTTCAATCTATTTCACTGC-ATCGCT-AGGG-AGGTAAGATTCACCGTT
* * * *
33580169 GTAGCTTC-ATCTATTTCGCTGCATCGCCT-GGGAAGTAAGATTCGCAGTT
1 GTAGCTTCAATCTATTTCACTGCATCG-CTAGGGAGGTAAGATTCACCGTT
*
33580218 GTGGCTTCAATCT
1 GTAGCTTCAATCT
33580231 TTTGAATTGC
Statistics
Matches: 240, Mismatches: 54, Indels: 36
0.73 0.16 0.11
Matches are distributed among these distances:
48 4 0.02
49 43 0.18
50 179 0.75
51 14 0.06
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (50 bp):
GTAGCTTCAATCTATTTCACTGCATCGCTAGGGAGGTAAGATTCACCGTT
Found at i:33579978 original size:100 final size:100
Alignment explanation
Indices: 33579869--33580311 Score: 547
Period size: 100 Copynumber: 4.4 Consensus size: 100
33579859 ATTCTCCATC
* *
33579869 GTAGCTTCAATCTGTTCCACTGCATCGCTAGGGAGGTAAGATTCACTGTTGTAGCTTCAATCTAT
1 GTAGCTTCAATCTATTCCACTGCATCGCTAGGGAGGTAAGATTCACTATTGTAGCTTCAATCTAT
* *
33579934 TTGACTGCAATGTCGGGGAAGAAAGATTCGCCGTT
66 TTGACTGCAATGTCGGGGAAGGAAGATTCACCGTT
* * * *
33579969 GTAGCTTCAATCTATTCCACTGTATCGCTAAGGAGGTGAGATTCATTATTGTAGCTTCAATCTAT
1 GTAGCTTCAATCTATTCCACTGCATCGCTAGGGAGGTAAGATTCACTATTGTAGCTTCAATCTAT
33580034 TTGACTGCAATGTCGGGGAAGGAAGATTCACCGTT
66 TTGACTGCAATGTCGGGGAAGGAAGATTCACCGTT
* * ** * *
33580069 GTAGCTTCAATCTATTCCACTGCATCGCCAGGGAGGTGAGATTTGCCATTGTGGCTTCAATCTAT
1 GTAGCTTCAATCTATTCCACTGCATCGCTAGGGAGGTAAGATTCACTATTGTAGCTTCAATCTAT
*
33580134 TTGACTGCAATGTCGGGGAAGGAAGATTCACTGTT
66 TTGACTGCAATGTCGGGGAAGGAAGATTCACCGTT
* * * * *
33580169 GTAGCTTC-ATCTATTTCGCTGCATCGCCT-GGGAAGTAAGATTCGC-AGTTGTGGCTTCAATCT
1 GTAGCTTCAATCTATTCCACTGCATCG-CTAGGGAGGTAAGATTCACTA-TTGTAGCTTCAATCT
* * * *
33580231 -TTTGAATTGCAATGTCGAGGAAGTG-AGATTCGCCGTC
64 ATTTG-ACTGCAATGTCGGGGAAG-GAAGATTCACCGTT
* * * *
33580268 GTAGATTCAATCTATTCCGCTGCATTGCCT-GGGAAGTAAGATTC
1 GTAGCTTCAATCTATTCCACTGCATCG-CTAGGGAGGTAAGATTC
33580312 GCCATTGTGA
Statistics
Matches: 307, Mismatches: 31, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
98 5 0.02
99 76 0.25
100 226 0.74
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (100 bp):
GTAGCTTCAATCTATTCCACTGCATCGCTAGGGAGGTAAGATTCACTATTGTAGCTTCAATCTAT
TTGACTGCAATGTCGGGGAAGGAAGATTCACCGTT
Found at i:33580077 original size:150 final size:149
Alignment explanation
Indices: 33579869--33580291 Score: 385
Period size: 150 Copynumber: 2.8 Consensus size: 149
33579859 ATTCTCCATC
* * * ** *
33579869 GTAGCTTCAATCTGTTCCACTGCATCGCTAGGG-AGGTAAGATTCACTGTTGTAGCTTCAATCTA
1 GTAGCTTC-ATCTATTTCGCTGCATCGCCGGGGAAGG-AAGATTCACAGTTGTAGCTTCAATCTA
** *
33579933 TTTGACTGCAATGTCGGGGAAGAAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTG-TATCG-
64 TTTGACTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAAT-GT
* *
33579996 CTAAGG-AGGTGAGATTCATTATT
128 C-AAGGAAGG-AAGATTCACTATT
* *
33580019 GTAGCTTCAATCTATTT-GACTGCAAT-GTCGGGGAAGGAAGATTCACCGTTGTAGCTTCAATCT
1 GTAGCTTC-ATCTATTTCG-CTGC-ATCGCCGGGGAAGGAAGATTCACAGTTGTAGCTTCAATCT
** * * * * * * **
33580082 ATTCCACTGC-ATCGCCAGGGAGGTGAGATTTGCCATTGTGGCTTCAATCTATTTGACTGCAATG
63 ATTTGACTGCAAT-GTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAATG
** *
33580146 TCGGGGAAGGAAGATTCACTGTT
127 TCAAGGAAGGAAGATTCACTATT
* * * *
33580169 GTAGCTTCATCTATTTCGCTGCATCGCCTGGGAAGTAAGATTCGCAGTTGTGGCTTCAATCT-TT
1 GTAGCTTCATCTATTTCGCTGCATCGCCGGGGAAGGAAGATTCACAGTTGTAGCTTCAATCTATT
* * * * *
33580233 TGAATTGCAATGTCGAGGAAGTGAGATTCGCCGTCGTAGATTCAATCTATTCCGCTGCA
66 TG-ACTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCA
33580292 TTGCCTGGGA
Statistics
Matches: 216, Mismatches: 46, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
148 4 0.02
149 85 0.39
150 116 0.54
151 11 0.05
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (149 bp):
GTAGCTTCATCTATTTCGCTGCATCGCCGGGGAAGGAAGATTCACAGTTGTAGCTTCAATCTATT
TGACTGCAATGTCGGGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAATGTCAA
GGAAGGAAGATTCACTATT
Found at i:33580303 original size:50 final size:50
Alignment explanation
Indices: 33579869--33580319 Score: 272
Period size: 50 Copynumber: 9.0 Consensus size: 50
33579859 ATTCTCCATC
* * * * * * *
33579869 GTAGCTTCAATCTGTTCCACTGCATCG-CTAGGGAGGTAAGATTCACTGTT
1 GTAGCTTCAATCTATTCCGCTGCATTGTCT-GGGAAGTGAGATTCGCCGTT
* * * **
33579919 GTAGCTTCAATCTATT-TGACTGCAATGTCGGGGAAGAAAGATTCGCCGTT
1 GTAGCTTCAATCTATTCCG-CTGCATTGTCTGGGAAGTGAGATTCGCCGTT
* * * * * ****
33579969 GTAGCTTCAATCTATTCCACTGTATCG-CTAAGGAGGTGAGATTCATTATT
1 GTAGCTTCAATCTATTCCGCTGCATTGTCT-GGGAAGTGAGATTCGCCGTT
* * * *
33580019 GTAGCTTCAATCTATT-TGACTGCAATGTCGGGGAAG-GAAGATTCACCGTT
1 GTAGCTTCAATCTATTCCG-CTGCATTGTCTGGGAAGTG-AGATTCGCCGTT
* * * * * * *
33580069 GTAGCTTCAATCTATTCCACTGCATCGCCAGGGAGGTGAGATTTGCCATT
1 GTAGCTTCAATCTATTCCGCTGCATTGTCTGGGAAGTGAGATTCGCCGTT
* * * * * *
33580119 GTGGCTTCAATCTATT-TGACTGCAATGTCGGGGAAG-GAAGATTCACTGTT
1 GTAGCTTCAATCTATTCCG-CTGCATTGTCTGGGAAGTG-AGATTCGCCGTT
* * * * *
33580169 GTAGCTTC-ATCTATTTCGCTGCATCGCCTGGGAAGTAAGATTCGCAGTT
1 GTAGCTTCAATCTATTCCGCTGCATTGTCTGGGAAGTGAGATTCGCCGTT
* * **** * *
33580218 GTGGCTTCAATCTTTTGAATTGCAATGTC-GAGGAAGTGAGATTCGCCGTC
1 GTAGCTTCAATCTATTCCGCTGCATTGTCTG-GGAAGTGAGATTCGCCGTT
* * * *
33580268 GTAGATTCAATCTATTCCGCTGCATTGCCTGGGAAGTAAGATTCGCCATT
1 GTAGCTTCAATCTATTCCGCTGCATTGTCTGGGAAGTGAGATTCGCCGTT
33580318 GT
1 GT
33580320 GACTTCAGTC
Statistics
Matches: 295, Mismatches: 90, Indels: 32
0.71 0.22 0.08
Matches are distributed among these distances:
49 41 0.14
50 250 0.85
51 4 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (50 bp):
GTAGCTTCAATCTATTCCGCTGCATTGTCTGGGAAGTGAGATTCGCCGTT
Found at i:33580320 original size:100 final size:99
Alignment explanation
Indices: 33579801--33580326 Score: 544
Period size: 100 Copynumber: 5.3 Consensus size: 99
33579791 GTCTCGTCGA
* * * * ** * *
33579801 GGAAATAAGATTCGCCATTGCGGCTTCAATCT-TTT-AGTTGCAATGTCAGAAAAGCAAGATTCT
1 GGAAGTAAGATTCGCCATTGTGGCTTCAATCTATTTGA-CTGCAATGTCGGGGAAG-GAGATTCA
* * *
33579864 CCATCGTAGCTTCAATCTGTTCCACTGCATCG-CTAG
64 CCGTTGTAGCTTCAATCTATTCCACTGCATCGCCT-G
* * ** * * *
33579900 GGAGGTAAGATTCACTGTTGTAGCTTCAATCTATTTGACTGCAATGTCGGGGAAGAAAGATTCGC
1 GGAAGTAAGATTCGCCATTGTGGCTTCAATCTATTTGACTGCAATGTCGGGGAAG-GAGATTCAC
* *
33579965 CGTTGTAGCTTCAATCTATTCCACTGTATCG-CTAA
65 CGTTGTAGCTTCAATCTATTCCACTGCATCGCCT-G
* * *** *
33580000 GGAGGTGAGATTCATTATTGTAGCTTCAATCTATTTGACTGCAATGTCGGGGAAGGAAGATTCAC
1 GGAAGTAAGATTCGCCATTGTGGCTTCAATCTATTTGACTGCAATGTCGGGGAAGG-AGATTCAC
*
33580065 CGTTGTAGCTTCAATCTATTCCACTGCATCGCCAG
65 CGTTGTAGCTTCAATCTATTCCACTGCATCGCCTG
* * *
33580100 GGAGGTGAGATTTGCCATTGTGGCTTCAATCTATTTGACTGCAATGTCGGGGAAGGAAGATTCAC
1 GGAAGTAAGATTCGCCATTGTGGCTTCAATCTATTTGACTGCAATGTCGGGGAAGG-AGATTCAC
* * *
33580165 TGTTGTAGCTTC-ATCTATTTCGCTGCATCGCCTG
65 CGTTGTAGCTTCAATCTATTCCACTGCATCGCCTG
* *
33580199 GGAAGTAAGATTCG-CAGTTGTGGCTTCAATCT-TTTGAATTGCAATGTCGAGGAAGTGAGATTC
1 GGAAGTAAGATTCGCCA-TTGTGGCTTCAATCTATTTG-ACTGCAATGTCGGGGAAG-GAGATTC
* * * * *
33580262 GCCGTCGTAGATTCAATCTATTCCGCTGCATTGCCTG
63 ACCGTTGTAGCTTCAATCTATTCCACTGCATCGCCTG
*
33580299 GGAAGTAAGATTCGCCATTGTGACTTCA
1 GGAAGTAAGATTCGCCATTGTGGCTTCA
33580327 GTCTCTTAAA
Statistics
Matches: 371, Mismatches: 47, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
98 6 0.02
99 102 0.27
100 259 0.70
101 4 0.01
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.32
Consensus pattern (99 bp):
GGAAGTAAGATTCGCCATTGTGGCTTCAATCTATTTGACTGCAATGTCGGGGAAGGAGATTCACC
GTTGTAGCTTCAATCTATTCCACTGCATCGCCTG
Found at i:33592185 original size:111 final size:109
Alignment explanation
Indices: 33591959--33592356 Score: 665
Period size: 109 Copynumber: 3.7 Consensus size: 109
33591949 GTCAATCGAG
* * ** *
33591959 AAATCGAAACCTAGCATATTAGGGCATG-TTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
* *
33592023 TTGAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAATGAGAA
66 TTGAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
*
33592067 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCATATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
33592132 TTGAAATTCTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTGAAA-T-TTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
*
33592178 AAGTCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
*
33592243 TTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTGAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
*
33592287 AAATCTACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTA-T
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
33592351 TTGAAA
66 TTGAAA
33592357 AATTTTTTCG
Statistics
Matches: 273, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
108 30 0.11
109 138 0.51
110 2 0.01
111 103 0.38
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (109 bp):
AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTGAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
Found at i:33592608 original size:4 final size:4
Alignment explanation
Indices: 33592599--33592630 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
33592589 TAACATAATA
33592599 TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG
33592631 AATTTTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:33592870 original size:3 final size:3
Alignment explanation
Indices: 33592842--33592898 Score: 71
Period size: 3 Copynumber: 18.3 Consensus size: 3
33592832 GAGATTTAGA
*
33592842 AAT AA- AAT AAT AAAT AAGT AGGT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT -AAT AA-T A-AT AAT AAT AAT AAT AAT AAT AAT AAT
33592889 AAT AAT AAT A
1 AAT AAT AAT A
33592899 GAATATGGAC
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
2 2 0.04
3 39 0.81
4 7 0.15
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:33595628 original size:18 final size:18
Alignment explanation
Indices: 33595601--33595635 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33595591 ATTTTGAGAA
* *
33595601 TTTATTTATTGTTTTGCT
1 TTTATATATTATTTTGCT
33595619 TTTATATATTATTTTGC
1 TTTATATATTATTTTGC
33595636 GGCTATTTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.06, G:0.09, T:0.69
Consensus pattern (18 bp):
TTTATATATTATTTTGCT
Found at i:33596819 original size:21 final size:22
Alignment explanation
Indices: 33596795--33596835 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
33596785 TATCAAAAAT
33596795 CTAG-AAAAAA-AATTATTAACA
1 CTAGTAAAAAATAATT-TTAACA
33596816 CTAGTAAAAAATAATTTTAA
1 CTAGTAAAAAATAATTTTAA
33596836 TTTTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 10 0.56
23 4 0.22
ACGTcount: A:0.59, C:0.07, G:0.05, T:0.29
Consensus pattern (22 bp):
CTAGTAAAAAATAATTTTAACA
Found at i:33602129 original size:19 final size:18
Alignment explanation
Indices: 33602081--33602130 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
33602071 AATTGTGTCG
33602081 TTCATTTCCAAAACATTA
1 TTCATTTCCAAAACATTA
* * *
33602099 TTCATTTACAAATCGTTA
1 TTCATTTCCAAAACATTA
33602117 TTCAATTTCCAAAA
1 TTC-ATTTCCAAAA
33602131 AATTTTTTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 18 0.69
19 8 0.31
ACGTcount: A:0.38, C:0.20, G:0.02, T:0.40
Consensus pattern (18 bp):
TTCATTTCCAAAACATTA
Found at i:33608546 original size:19 final size:18
Alignment explanation
Indices: 33608498--33608550 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
33608488 AATCGTGTCG
33608498 TTCATTTCCAAAACATTA
1 TTCATTTCCAAAACATTA
* * *
33608516 TTCATTTACAAATCGTTA
1 TTCATTTCCAAAACATTA
33608534 TTCAATTTCC-AAACATT
1 TTC-ATTTCCAAAACATT
33608551 TTTTTATTGC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
18 23 0.82
19 5 0.18
ACGTcount: A:0.36, C:0.21, G:0.02, T:0.42
Consensus pattern (18 bp):
TTCATTTCCAAAACATTA
Found at i:33609520 original size:17 final size:18
Alignment explanation
Indices: 33609488--33609522 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
33609478 CCATGACGTT
*
33609488 CGCCCGTGTAGGCCCACA
1 CGCCCATGTAGGCCCACA
33609506 CGCCCATGT-GGCCCACA
1 CGCCCATGTAGGCCCACA
33609523 TGGTCTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.46, G:0.26, T:0.11
Consensus pattern (18 bp):
CGCCCATGTAGGCCCACA
Found at i:33611384 original size:22 final size:22
Alignment explanation
Indices: 33611336--33611384 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
33611326 TGGTACTGAA
* * * *
33611336 AAAAAGGTATCGATATTTCTTT
1 AAAATGGTATCGATACTGCTTG
*
33611358 CAAATGGTATCGATACTGCTTG
1 AAAATGGTATCGATACTGCTTG
33611380 AAAAT
1 AAAAT
33611385 TTGATACTGA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (22 bp):
AAAATGGTATCGATACTGCTTG
Found at i:33616411 original size:17 final size:16
Alignment explanation
Indices: 33616389--33616432 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
33616379 TTCATAACAT
33616389 TTAAAAATATATTTAA
1 TTAAAAATATATTTAA
*
33616405 GTTAAAAATAT-TTTTA
1 -TTAAAAATATATTTAA
33616421 TT-AAAATATATT
1 TTAAAAATATATT
33616433 AATAACAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 7 0.28
15 4 0.16
16 4 0.16
17 10 0.40
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
TTAAAAATATATTTAA
Found at i:33620963 original size:18 final size:18
Alignment explanation
Indices: 33620922--33620964 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
33620912 TTCTCATTTG
* *
33620922 CGCCTTATTCCTCATCTA
1 CGCCTTCTTCCTCACCTA
*
33620940 CACCTTCTTCCTCACCTA
1 CGCCTTCTTCCTCACCTA
*
33620958 TGCCTTC
1 CGCCTTC
33620965 ATTGTCACCT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.14, C:0.44, G:0.05, T:0.37
Consensus pattern (18 bp):
CGCCTTCTTCCTCACCTA
Found at i:33625922 original size:2 final size:2
Alignment explanation
Indices: 33625879--33625909 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
33625869 TAAAAAGCAA
33625879 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
33625910 AATCAGCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33626432 original size:9 final size:9
Alignment explanation
Indices: 33626418--33626448 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
33626408 ATTTTTTTAA
33626418 AAAAAATTT
1 AAAAAATTT
33626427 AAAAAATTT
1 AAAAAATTT
*
33626436 AAAAATTTT
1 AAAAAATTT
33626445 AAAA
1 AAAA
33626449 CGTTATCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAAAATTT
Found at i:33627638 original size:18 final size:20
Alignment explanation
Indices: 33627598--33627640 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
33627588 TAACTCTTAC
33627598 TTATTGTAAAAAGTTAAATA
1 TTATTGTAAAAAGTTAAATA
*
33627618 TTATT-TAAAAATTTAAA-A
1 TTATTGTAAAAAGTTAAATA
33627636 TTATT
1 TTATT
33627641 AATGATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.27
19 11 0.50
20 5 0.23
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
TTATTGTAAAAAGTTAAATA
Found at i:33634795 original size:29 final size:29
Alignment explanation
Indices: 33634753--33634810 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
33634743 GGAAACTACT
33634753 ATTCCAGATGTGATTGTTGGTACATTCTA
1 ATTCCAGATGTGATTGTTGGTACATTCTA
33634782 ATTCCAGATGTGATTGTTGGTACATTCTA
1 ATTCCAGATGTGATTGTTGGTACATTCTA
33634811 TCTCTTTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (29 bp):
ATTCCAGATGTGATTGTTGGTACATTCTA
Found at i:33639692 original size:40 final size:39
Alignment explanation
Indices: 33639616--33639692 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 39
33639606 GAATCAGTTT
**
33639616 GGGCCTTAGCCCATTCAGATACAGTCTCAGAAATACATTA
1 GGGCCTTAGCCCATTCAGATACAGAATCAG-AATACATTA
*
33639656 GGGCCTTGGCCCATATCAGATACAGAATGCAG-ATACA
1 GGGCCTTAGCCCAT-TCAGATACAGAAT-CAGAATACA
33639693 GTAAATCAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 18 0.56
41 11 0.34
42 3 0.09
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (39 bp):
GGGCCTTAGCCCATTCAGATACAGAATCAGAATACATTA
Found at i:33642244 original size:21 final size:22
Alignment explanation
Indices: 33642234--33642279 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
33642224 TATGTGTTTT
33642234 TGTTCAGCTCTT-TCGAGCTTC
1 TGTTCAGCTCTTATCGAGCTTC
*
33642255 TGTTCAGCTCTTA-CGAACTTC
1 TGTTCAGCTCTTATCGAGCTTC
33642276 TGTT
1 TGTT
33642280 GACGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.13, C:0.26, G:0.17, T:0.43
Consensus pattern (22 bp):
TGTTCAGCTCTTATCGAGCTTC
Found at i:33645488 original size:20 final size:20
Alignment explanation
Indices: 33645399--33645488 Score: 53
Period size: 20 Copynumber: 4.5 Consensus size: 20
33645389 ACGAGATTTG
* * *
33645399 CACTTCGGTGTCTCTGTATA
1 CACTTCGGTGCCCCTGTCTA
* *
33645419 CACTTCGATGTCCCTGTC-A
1 CACTTCGGTGCCCCTGTCTA
* *
33645438 CACTAT-GGTGCCCCTATTTGTA
1 CACT-TCGGTGCCCC--TGTCTA
*
33645460 CA-TT-TGTGCCCCTGTCTA
1 CACTTCGGTGCCCCTGTCTA
33645478 CACTTCGGTGC
1 CACTTCGGTGC
33645489 TCTTTTTATG
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
18 6 0.11
19 13 0.25
20 28 0.53
21 3 0.06
22 3 0.06
ACGTcount: A:0.14, C:0.31, G:0.19, T:0.36
Consensus pattern (20 bp):
CACTTCGGTGCCCCTGTCTA
Found at i:33662243 original size:22 final size:21
Alignment explanation
Indices: 33662196--33662237 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
33662186 CATTAATTTT
33662196 AACACATTACATACCAACTTTA
1 AACACATTACATACCAAC-TTA
*
33662218 AACACATTACAATTCCAACT
1 AACACATTAC-ATACCAACT
33662238 AGAACATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (21 bp):
AACACATTACATACCAACTTA
Found at i:33666238 original size:51 final size:51
Alignment explanation
Indices: 33666166--33666318 Score: 299
Period size: 51 Copynumber: 3.0 Consensus size: 51
33666156 TTCCGCTAAG
33666166 AGAAAAGTTTTAAAGCAAATCAAATAGTTTTTTTGAATTAAATAAAAGCTA
1 AGAAAAGTTTTAAAGCAAATCAAATAGTTTTTTTGAATTAAATAAAAGCTA
33666217 AGAAAAGTTTTAAAGCAAATCAAATAGTTTTTTTGAATTAAATAAAAGCTA
1 AGAAAAGTTTTAAAGCAAATCAAATAGTTTTTTTGAATTAAATAAAAGCTA
33666268 AGAAAAGTTTTAAAGCAAATCAAATAG-TTTTTTGAATTAAATAAAAGCTA
1 AGAAAAGTTTTAAAGCAAATCAAATAGTTTTTTTGAATTAAATAAAAGCTA
33666318 A
1 A
33666319 CTTAGTGTAA
Statistics
Matches: 102, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
50 24 0.24
51 78 0.76
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.33
Consensus pattern (51 bp):
AGAAAAGTTTTAAAGCAAATCAAATAGTTTTTTTGAATTAAATAAAAGCTA
Found at i:33671572 original size:26 final size:26
Alignment explanation
Indices: 33671536--33671597 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
33671526 TGGAGGAAGT
*
33671536 ATACTGTTACTGGCAACTTTGTTGCG
1 ATACTGTTACTGGCAACTTTGCTGCG
*
33671562 ATACTGTTACTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAACTTTGCTGCG
*
33671588 ATACTATTAC
1 ATACTGTTAC
33671598 GATTAGCTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCAACTTTGCTGCG
Found at i:33680849 original size:21 final size:21
Alignment explanation
Indices: 33680787--33680849 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
33680777 TAGCACTGTA
* *
33680787 GCTGCCAGTCCCATCACCGCC
1 GCTGGCAGTCCCATCACCACC
* * *
33680808 TCTGGCAGTCACCAACTCCACC
1 GCTGGCAGTC-CCATCACCACC
33680830 GCTGG-ATGTCCCATCACCAC
1 GCTGGCA-GTCCCATCACCAC
33680850 TTGCCACTGA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
21 17 0.53
22 15 0.47
ACGTcount: A:0.19, C:0.46, G:0.17, T:0.17
Consensus pattern (21 bp):
GCTGGCAGTCCCATCACCACC
Found at i:33681704 original size:3 final size:3
Alignment explanation
Indices: 33681691--33681734 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
33681681 GTTAATTAAT
*
33681691 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
33681735 GTCATTAGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:33682517 original size:109 final size:109
Alignment explanation
Indices: 33682326--33682642 Score: 478
Period size: 109 Copynumber: 2.9 Consensus size: 109
33682316 GAGGAAAATT
* *
33682326 TTTCAAAATAAGGCAATGTTTTGTGTTTGGAAATTCAAGAAAACGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
*
33682391 CGATTTTTCTCGTTCAACCAAATTGCCAAATATCCTTCCAAAAA
66 CGATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTCCAAAAA
*
33682435 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTAGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* * **
33682500 TGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTTAAAAA
66 CGATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTCCAAAAA
* * * *
33682544 TTGCAAAATAAGGCAATGTTTTGCATTTGGAAATTTGAG-GAACGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
33682608 CGA-TTTTCTCAATT-AACCAAATAGACAAATATCCT
66 CGATTTTTCTC-GTTCAACCAAATAGCCAAATATCCT
33682643 CTTGAATTTC
Statistics
Matches: 190, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
107 26 0.14
108 27 0.14
109 137 0.72
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (109 bp):
TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
CGATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTCCAAAAA
Found at i:33692310 original size:4 final size:4
Alignment explanation
Indices: 33692301--33692331 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
33692291 TATCTTTTTT
33692301 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
33692332 TATATATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:33692952 original size:3 final size:3
Alignment explanation
Indices: 33692939--33692994 Score: 85
Period size: 3 Copynumber: 18.7 Consensus size: 3
33692929 GTTAATTAAT
* *
33692939 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
33692987 TTA GTA TT
1 TTA TTA TT
33692995 GACATTAGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:33693779 original size:109 final size:107
Alignment explanation
Indices: 33693588--33693901 Score: 481
Period size: 109 Copynumber: 2.9 Consensus size: 107
33693578 AGGAAAATTT
*
33693588 TTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGATAAAACGTGCCCTAATGTGCTGGGTTTC
1 TTCAAAATAAGGCAATGTTTTGCGTTT-GAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTC
33693653 GATTTTTCTCGTTCAACCAAATAGCCAAATATCTTTCCAAAAAA
65 GATTTTTCTCGTTCAACCAAATAGCCAAATATCTTT-CAAAAAA
*
33693697 TTCAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGAAAACGTACCCTAATGTGCTGGGTTTC
1 TTCAAAATAAGGCAATGTTTTGCGTTT-GAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTC
* * *
33693762 GATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTTAAAAAT
65 GATTTTTCTCGTTCAACCAAATAGCCAAATAT-CTTTCAAAAAA
*
33693806 TTCAAAATAAGGCAATGTTTTGCGTTTGAAAATTTGACG--AACGTGCCCTAATGTGCTGGGTTT
1 TTCAAAATAAGGCAATGTTTTGCGTTTG-AAATTCGA-GAAAACGTGCCCTAATGTGCTGGGTTT
* *
33693869 CGA-TTTTCTCATTTAACCAAATAGCCAAATATC
64 CGATTTTTCTCGTTCAACCAAATAGCCAAATATC
33693902 CTCTTGAATT
Statistics
Matches: 191, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
106 1 0.01
107 26 0.14
108 27 0.14
109 132 0.69
110 5 0.03
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34
Consensus pattern (107 bp):
TTCAAAATAAGGCAATGTTTTGCGTTTGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCG
ATTTTTCTCGTTCAACCAAATAGCCAAATATCTTTCAAAAAA
Found at i:33696187 original size:25 final size:25
Alignment explanation
Indices: 33696147--33696208 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
33696137 ATATGTCATT
*
33696147 GGGAAGCTCATAAGAGCCGTAAATC
1 GGGAAGCTCATAAGAGCCATAAATC
* * *
33696172 GGGTAGCTCA-AGAGAGCTATCAATC
1 GGGAAGCTCATA-AGAGCCATAAATC
33696197 GGGAAGCTCATA
1 GGGAAGCTCATA
33696209 CAAGCCAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 1 0.03
25 28 0.93
26 1 0.03
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.18
Consensus pattern (25 bp):
GGGAAGCTCATAAGAGCCATAAATC
Found at i:33703399 original size:71 final size:71
Alignment explanation
Indices: 33703204--33703406 Score: 237
Period size: 71 Copynumber: 2.9 Consensus size: 71
33703194 CTGCCTTCGG
* * * *
33703204 TGTCACGACACAGCCCTGAAGACACGCCCAAGCTAGTAAGTTGCCTTCGGTGCCATGACACAACC
1 TGTCACGACACAGCCCTAAAGACTCGCCCAAGCTAGTAAATTGCCTTCGGTGTCATGACACAACC
*
33703269 AAATGA
66 AAAGGA
* * * *
33703275 TGTCACGACAGAGCCCTAAAGACAT-GCCCAAGCTAGTAGACTACCTTCGGTGTCATGACACAAC
1 TGTCACGACACAGCCCTAAAGAC-TCGCCCAAGCTAGTAAATTGCCTTCGGTGTCATGACACAAC
33703339 CAAAGGA
65 CAAAGGA
** * * * * * *
33703346 TGTTGCGACACAACCCTAAAGACTCACCCAAGTTAGTAAATTGCCATCAGTGTCGTGACAC
1 TGTCACGACACAGCCCTAAAGACTCGCCCAAGCTAGTAAATTGCCTTCGGTGTCATGACAC
33703407 CGATGTGACA
Statistics
Matches: 109, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
70 1 0.01
71 108 0.99
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.19
Consensus pattern (71 bp):
TGTCACGACACAGCCCTAAAGACTCGCCCAAGCTAGTAAATTGCCTTCGGTGTCATGACACAACC
AAAGGA
Found at i:33711446 original size:30 final size:31
Alignment explanation
Indices: 33711410--33711468 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
33711400 TTCGAGCTTG
33711410 GGGACAAAAATGTAATTATG-CAAAAGTTTA
1 GGGACAAAAATGTAATTATGACAAAAGTTTA
* *
33711440 GGGACAAAATTGTAATTTTGACAAAAGTT
1 GGGACAAAAATGTAATTATGACAAAAGTT
33711469 GAGTCAAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.29
Consensus pattern (31 bp):
GGGACAAAAATGTAATTATGACAAAAGTTTA
Found at i:33712023 original size:51 final size:51
Alignment explanation
Indices: 33711937--33712276 Score: 366
Period size: 51 Copynumber: 6.7 Consensus size: 51
33711927 TATCGATGAA
* * *
33711937 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATGTTGGT
* * * * * *
33711988 CACATGTGTAGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCT-TTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAA-ATGTTGGT
* * * *
33712039 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATGTTGGT
* * * * *
33712090 CACATGTGTAATACTAAGTGAAGGCTACTATGTGTACCGA-AAA-GCTTTCGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATG--TTGGT
* * ** *
33712141 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCG-TAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATGTTGGT
* * ** *
33712191 AACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATGTTGGT
33712241 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
33712277 TCGAATGATA
Statistics
Matches: 244, Mismatches: 39, Indels: 13
0.82 0.13 0.04
Matches are distributed among these distances:
49 1 0.00
50 89 0.36
51 153 0.63
52 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATGTTGGT
Found at i:33712113 original size:102 final size:101
Alignment explanation
Indices: 33711937--33712280 Score: 467
Period size: 102 Copynumber: 3.4 Consensus size: 101
33711927 TATCGATGAA
* *
33711937 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
33712002 TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGA-AAGCTTTGGT
* *
33712039 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAATAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
33712104 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTCGT
66 TAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGGT
* * *** * * *
33712141 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCG-TAAAACTTGATAACGTGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* * * * *
33712205 TATGTGAAGGCTACTACGTGAACCGTAAAAC-TTGAT
66 TAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGGT
*
33712241 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
33712281 ATGATAAAAG
Statistics
Matches: 216, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
100 39 0.18
101 44 0.20
102 132 0.61
103 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAGCTTTGGT
Found at i:33715512 original size:25 final size:23
Alignment explanation
Indices: 33715468--33715514 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
33715458 GGAATAGGGA
33715468 AGAAAATGAAGAACAATGAAGAG
1 AGAAAATGAAGAACAATGAAGAG
33715491 AGAAAAGTGAAAGAA-AAGTGAAGA
1 AGAAAA-TG-AAGAACAA-TGAAGA
33715515 ATGAATGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 6 0.29
24 4 0.19
25 11 0.52
ACGTcount: A:0.62, C:0.02, G:0.28, T:0.09
Consensus pattern (23 bp):
AGAAAATGAAGAACAATGAAGAG
Found at i:33717739 original size:31 final size:31
Alignment explanation
Indices: 33717701--33717763 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
33717691 TTTAGGAAAC
*
33717701 AAATGAGGTATTGATTTGTTGGTTAAGTGTT
1 AAATGAGGTATTGATTTGTTGGCTAAGTGTT
33717732 AAATGAGGTATTGATTTGTTGGCTAAGTGTT
1 AAATGAGGTATTGATTTGTTGGCTAAGTGTT
33717763 A
1 A
33717764 GTGAAATGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.27, C:0.02, G:0.29, T:0.43
Consensus pattern (31 bp):
AAATGAGGTATTGATTTGTTGGCTAAGTGTT
Found at i:33727724 original size:18 final size:18
Alignment explanation
Indices: 33727689--33727724 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
33727679 ATTTTTAACC
*
33727689 TTAATAAAAAATTAAAAA
1 TTAATAAAAAACTAAAAA
33727707 TTAATAAAAAAACTAAAA
1 TTAAT-AAAAAACTAAAA
33727725 CTAAAACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (18 bp):
TTAATAAAAAACTAAAAA
Found at i:33727936 original size:16 final size:17
Alignment explanation
Indices: 33727917--33727949 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33727907 AATTTTATAG
33727917 ATTTTA-ATAATTATTA
1 ATTTTATATAATTATTA
*
33727933 ATTTTATATATTTATTA
1 ATTTTATATAATTATTA
33727950 TACATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTATATAATTATTA
Found at i:33727946 original size:24 final size:24
Alignment explanation
Indices: 33727887--33727946 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
33727877 TGTTATGTTA
*
33727887 TTATATATTTTATAAATTTAAATT
1 TTATATATTTAATAAATTTAAATT
* *
33727911 TTATAGATTTTAAT-AATTATTAATT
1 TTATATA-TTTAATAAATT-TAAATT
33727936 TTATATATTTA
1 TTATATATTTA
33727947 TTATACATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 14 0.47
25 16 0.53
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (24 bp):
TTATATATTTAATAAATTTAAATT
Found at i:33737925 original size:25 final size:25
Alignment explanation
Indices: 33737877--33737927 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
33737867 ATTTAAATAC
*
33737877 TTTTAAAAATTTTTTATTTTTTTAT
1 TTTTAAAAATTTTTTATTTGTTTAT
*
33737902 TTTTAAATATTTTTT-TTGTGTTTAT
1 TTTTAAAAATTTTTTATT-TGTTTAT
33737927 T
1 T
33737928 AAAAACCGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.73
Consensus pattern (25 bp):
TTTTAAAAATTTTTTATTTGTTTAT
Found at i:33738421 original size:20 final size:21
Alignment explanation
Indices: 33738379--33738425 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
33738369 ATTCAATTTT
33738379 TAAAAATTATTATAAAAGTTA
1 TAAAAATTATTATAAAAGTTA
*
33738400 TAAAAATTA-TATTATAAG-TA
1 TAAAAATTATTA-TAAAAGTTA
33738420 TAAAAA
1 TAAAAA
33738426 CATATGGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
TAAAAATTATTATAAAAGTTA
Found at i:33742297 original size:213 final size:214
Alignment explanation
Indices: 33741930--33742357 Score: 786
Period size: 213 Copynumber: 2.0 Consensus size: 214
33741920 TTCCAAATGG
* *
33741930 GGAATATTTGGAACCGTGCTATATTAAACCTGATGATGGTATGCATATTGTTTGCTTCATCCCTT
1 GGAATATTTGGAACCGTGCTATATTAAACCTGATAATGGTATACATATTGTTTGCTTCATCCCTT
* * *
33741995 TGTCATGATGTAATTTCGTTACAGGCATTAATTGATGCTACATCCTCCGACAGCGACCTTGAAAA
66 TGTCATGATGTAATTTCATTACAGGCATTAATAGATGCTACATCCTCCGACAGCGACCCTGAAAA
33742060 TGAGAGTGGTGTTAGAATGGTGGCATTGTTTGATCATGAGGAGGTTGGATCTAATTCAGCACAAG
131 TGAGAGTGGTGTTAGAATGGTGGCATTGTTTGATCATGAGGAGGTTGGATCTAATTCAGCACAAG
33742125 GAGC-GGATCTCCTGCAAT
196 GAGCGGGATCTCCTGCAAT
*
33742143 GGAATATTTGGAACCGTGCTATATTAAACCTGATAATGGTATACATATTTTTTGCTTCATCCCTT
1 GGAATATTTGGAACCGTGCTATATTAAACCTGATAATGGTATACATATTGTTTGCTTCATCCCTT
*
33742208 TGTGATGATGTAATTTCATTACAGGCATTAATAGATGCTACATCCTCCGACAGCGACCCTGAAAA
66 TGTCATGATGTAATTTCATTACAGGCATTAATAGATGCTACATCCTCCGACAGCGACCCTGAAAA
33742273 TGAGAGTGGTGTTAGAATGGTGGCATTGTTTGATCATGAGGAGGTTGGATCTAATTCAGCACAAG
131 TGAGAGTGGTGTTAGAATGGTGGCATTGTTTGATCATGAGGAGGTTGGATCTAATTCAGCACAAG
33742338 GAGCGGGATCTCCTGCAAT
196 GAGCGGGATCTCCTGCAAT
33742357 G
1 G
33742358 TTAGATGCTC
Statistics
Matches: 207, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
213 192 0.93
214 15 0.07
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (214 bp):
GGAATATTTGGAACCGTGCTATATTAAACCTGATAATGGTATACATATTGTTTGCTTCATCCCTT
TGTCATGATGTAATTTCATTACAGGCATTAATAGATGCTACATCCTCCGACAGCGACCCTGAAAA
TGAGAGTGGTGTTAGAATGGTGGCATTGTTTGATCATGAGGAGGTTGGATCTAATTCAGCACAAG
GAGCGGGATCTCCTGCAAT
Found at i:33753294 original size:24 final size:24
Alignment explanation
Indices: 33753267--33753352 Score: 91
Period size: 24 Copynumber: 3.6 Consensus size: 24
33753257 GATCATTGTC
* * *
33753267 TTCATCTTCACCTCGACCCCCGTA
1 TTCATCTTCATCTCAACCCTCGTA
* *
33753291 TTCATCTTGATCTCAACCCTCGTC
1 TTCATCTTCATCTCAACCCTCGTA
* * *
33753315 TTCATCTTTATCTCCACCCTCGTT
1 TTCATCTTCATCTCAACCCTCGTA
*
33753339 TTCATCTCCATCTC
1 TTCATCTTCATCTC
33753353 TTTCTTTTGT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.15, C:0.41, G:0.06, T:0.38
Consensus pattern (24 bp):
TTCATCTTCATCTCAACCCTCGTA
Found at i:33756031 original size:22 final size:22
Alignment explanation
Indices: 33756000--33756048 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
33755990 GTAGAAGCAA
*
33756000 TGTCGTGACACATCAGGTCTTG
1 TGTCGCGACACATCAGGTCTTG
33756022 TGTCGCGACACATCAGGTCTTG
1 TGTCGCGACACATCAGGTCTTG
33756044 TGTCG
1 TGTCG
33756049 TAACATCGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (22 bp):
TGTCGCGACACATCAGGTCTTG
Found at i:33758291 original size:48 final size:49
Alignment explanation
Indices: 33758227--33758324 Score: 144
Period size: 51 Copynumber: 2.0 Consensus size: 49
33758217 GGCATTGCTA
*
33758227 GATTACATTTGGATGATGGTG-AGAAGGCTTGGCAAGTAGATCTAGAAG
1 GATTACATTTGGATGATGGTGAAGAAGGATTGGCAAGTAGATCTAGAAG
* *
33758275 GATTACATTTGGATGATGGTGACAAGGAGGATTGGCAAGTAGATTTAGAA
1 GATTACATTTGGATGATGGTG--AAGAAGGATTGGCAAGTAGATCTAGAA
33758325 AATTAGATCG
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
48 21 0.48
51 23 0.52
ACGTcount: A:0.33, C:0.07, G:0.33, T:0.28
Consensus pattern (49 bp):
GATTACATTTGGATGATGGTGAAGAAGGATTGGCAAGTAGATCTAGAAG
Found at i:33761915 original size:126 final size:126
Alignment explanation
Indices: 33761712--33762188 Score: 782
Period size: 126 Copynumber: 3.8 Consensus size: 126
33761702 TAATTTCGAG
* * *
33761712 TTGACTTTTCTGATCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* * *
33761777 AAATTGCGCCCTCGTGGACGCACTTTTGCTATAGTAGGTCACGGAAGAAATAATTATTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
33761838 TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
*
33761903 AAATCGCTCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
33761964 TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* * * *
33762029 AAATCGCAG-CCTTGTGGATGCGCTTTTGCTACAGTAGGTCATGTAAGAAAT-A--ATTTTT
66 AAATCGC-GCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
* * *
33762087 TTAACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGGG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
*
33762152 AAATCGCGCCCTCGTGGACGCGCTTTTGCTATAGTAG
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
33762189 CATGTTTGGG
Statistics
Matches: 331, Mismatches: 18, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
122 1 0.00
123 100 0.30
125 1 0.00
126 229 0.69
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (126 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
Found at i:33765422 original size:116 final size:116
Alignment explanation
Indices: 33765218--33765457 Score: 408
Period size: 116 Copynumber: 2.1 Consensus size: 116
33765208 TGATAAATTG
33765218 TATTAACTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAACTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
* * * *
33765283 TAGTACCAGTCAAAATATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACAGTTTTCCAAATCTAACATTACGTAAATGTAAAAT
* * *
33765334 TATTAACTCTAAAAATTTTATTAATGGTTCGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAACTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
*
33765399 TAGTAGCAGTCAAAACAGTTTTCCAAATCTAACATTACGTAAATGTAAAAT
66 TAGTACCAGTCAAAACAGTTTTCCAAATCTAACATTACGTAAATGTAAAAT
33765450 TATTAACT
1 TATTAACT
33765458 TAGTTTAGGG
Statistics
Matches: 116, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 116 1.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (116 bp):
TATTAACTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
TAGTACCAGTCAAAACAGTTTTCCAAATCTAACATTACGTAAATGTAAAAT
Found at i:33765532 original size:22 final size:22
Alignment explanation
Indices: 33765480--33765551 Score: 89
Period size: 21 Copynumber: 3.5 Consensus size: 22
33765470 TTTAATTAAA
*
33765480 TTAAGTT--AGGGGTAGGGTTT
1 TTAAGTTAAAGGGTTAGGGTTT
* *
33765500 TAAAG-TGAAGGGTTAGGGTTT
1 TTAAGTTAAAGGGTTAGGGTTT
33765521 TTAAGTTAAAGGGTTAGGGTTT
1 TTAAGTTAAAGGGTTAGGGTTT
33765543 TTAA-TTAAA
1 TTAAGTTAAA
33765552 TTAGGTTAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
19 1 0.02
20 4 0.09
21 21 0.47
22 19 0.42
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (22 bp):
TTAAGTTAAAGGGTTAGGGTTT
Found at i:33765563 original size:45 final size:44
Alignment explanation
Indices: 33765510--33765644 Score: 171
Period size: 45 Copynumber: 3.2 Consensus size: 44
33765500 TAAAGTGAAG
33765510 GGTTAGGGTTTTTAAGTTAAAGGGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAAGTT-AAGGGTTAGGGTTTTTAATTAAATTA
33765555 GGTTA-GG-------GTT-AGGGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTAAATTA
*
33765590 GGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTT-AAGTTAAGGGTTAGGGTTTTTAATTAAATTA
*
33765635 GGTTAAGGTT
1 GGTTAGGGTT
33765645 AGGGTTTTTA
Statistics
Matches: 78, Mismatches: 2, Indels: 20
0.78 0.02 0.20
Matches are distributed among these distances:
35 30 0.38
36 2 0.03
37 3 0.04
44 5 0.06
45 38 0.49
ACGTcount: A:0.27, C:0.00, G:0.28, T:0.44
Consensus pattern (44 bp):
GGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTAAATTA
Found at i:33765564 original size:29 final size:33
Alignment explanation
Indices: 33765530--33765982 Score: 268
Period size: 29 Copynumber: 14.2 Consensus size: 33
33765520 TTTAAGTTAA
33765530 AGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT
1 AGGGTTAGGGTTTTTAATTAAA-TA-GTTAGGGTT
33765565 AGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTT
1 AGGGTTAGGGTTTTTAATTAAA-TA-GTTAGGG---TT
33765603 AAAGTTAAGGTTTAGGGTTTTTAATT-AA-A-TTA-GGTT
1 --AG----GG-TTAGGGTTTTTAATTAAATAGTTAGGGTT
*
33765639 AAGGTTAGGGTTTTTAATT-AA-A-TTA-GGTT
1 AGGGTTAGGGTTTTTAATTAAATAGTTAGGGTT
33765668 AGGGTTAGGGTTTTTAATT-AA-A-TTA-GGTT
1 AGGGTTAGGGTTTTTAATTAAATAGTTAGGGTT
33765697 AGGGTTAGGGTTTTTAATT-AA-A-TTA-GGTT
1 AGGGTTAGGGTTTTTAATTAAATAGTTAGGGTT
*
33765726 AGGGTTTAGGTTTTTTAATT-AA-A-TTA-GGTT
1 AGGG-TTAGGGTTTTTAATTAAATAGTTAGGGTT
*
33765756 AGGGTTAAGGTTTTTAATT-AA-A-TTA-GGTT
1 AGGGTTAGGGTTTTTAATTAAATAGTTAGGGTT
33765785 AGGGTTAGGGTTTTTAATT-AA-A-TTA-GGTT
1 AGGGTTAGGGTTTTTAATTAAATAGTTAGGGTT
33765814 AGGGTTAGGGTTTTTAATT-AA-A-TTA-GGTT
1 AGGGTTAGGGTTTTTAATTAAATAGTTAGGGTT
** * * ** **
33765843 AGGGTT-TTGTATTAAATTAGGTTAGGGTTTTTAAAGTT
1 AGGGTTAGGGTTTTTAATTA-AATA--G---TTAGGGTT
* *
33765881 AAGGTTTAGGGTTTTTAA-TCAA-A-TTA-GGTT
1 -AGGGTTAGGGTTTTTAATTAAATAGTTAGGGTT
*
33765911 AGGGTTAGGGTTTTTAATT-AA-A-TTA-TGTT
1 AGGGTTAGGGTTTTTAATTAAATAGTTAGGGTT
33765940 AGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTT
1 AGGGTTAGGGTTTTTAATTAAA-TA-GTTAGGG-TT
33765976 AGGGTTA
1 AGGGTTA
33765983 AATTAGGTTA
Statistics
Matches: 362, Mismatches: 25, Indels: 61
0.81 0.06 0.14
Matches are distributed among these distances:
28 8 0.02
29 216 0.60
30 36 0.10
31 4 0.01
32 1 0.00
34 4 0.01
35 34 0.09
36 11 0.03
37 4 0.01
38 5 0.01
39 8 0.02
40 11 0.03
42 1 0.00
44 4 0.01
45 15 0.04
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.45
Consensus pattern (33 bp):
AGGGTTAGGGTTTTTAATTAAATAGTTAGGGTT
Found at i:33765618 original size:80 final size:74
Alignment explanation
Indices: 33765462--33765916 Score: 328
Period size: 88 Copynumber: 5.8 Consensus size: 74
33765452 TTAACTTAGT
* * * * * * *
33765462 TTAGGGTTTTTAATTAAATTAAGTTAGGGGTAGGGTTTTAAAGTGAA--GGGTTAGGGTTTTTAA
1 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAA
33765525 GTTAAAGGG
66 GTTAAAGGG
33765534 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTA-----A-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGT
*
33765599 TTTTAAAGTT-AAGGT
60 TTTT-AAGTTAAAGGG
33765614 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATT-AA--A--TTA-GGTTAGGGT
33765679 TTTTAA-TTAAATTAGGTTAGGG
60 TTTTAAGTT--A--A----AGGG
* *
33765701 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGTTTTTTAATTAAATTAGGTTAGGGTTAAGG
1 TTAGGGTTTTTAATTAAATTAGGTTAAGG-TTAGGGTTTTTAATTAAATTAGGTTA--G----GG
33765766 TTTTTAA-TTAAATTAGGTTAGGG
59 TTTTTAAGTT--A--A----AGGG
*
33765789 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTGT-
1 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTT-TA
*
33765853 A-TTAAATTAGG
65 AGTTAAA--GGG
*
33765864 TTAGGG--TTT--TT-AA--A-GTTAAGGTTTAGGGTTTTTAATCAAATTAGGTTAGGGTT
1 TTAGGGTTTTTAATTAAATTAGGTTAAGG-TTAGGGTTTTTAATTAAATTAGGTTAGGGTT
33765917 AGGGTTTTTA
Statistics
Matches: 333, Mismatches: 15, Indels: 74
0.79 0.04 0.18
Matches are distributed among these distances:
67 6 0.02
68 31 0.09
70 2 0.01
71 2 0.01
72 25 0.08
73 4 0.01
74 17 0.05
75 11 0.03
77 2 0.01
78 18 0.05
79 6 0.02
80 56 0.17
81 14 0.04
82 6 0.02
83 4 0.01
84 1 0.00
85 2 0.01
87 58 0.17
88 68 0.20
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.45
Consensus pattern (74 bp):
TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAA
GTTAAAGGG
Found at i:33765678 original size:58 final size:58
Alignment explanation
Indices: 33765614--33765981 Score: 438
Period size: 58 Copynumber: 6.6 Consensus size: 58
33765604 AAGTTAAGGT
*
33765614 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
33765672 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
* *
33765730 TTTAGGTTTTTTAATTAAATTAGGTTAGGGTTAAGGTTTTTAATTAAATTAGGTTAGGG
1 -TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
33765789 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
* *
33765847 -T----TTTGT-ATT-AA--A--TTA-GGTTAGGGTTTTT-A--AAGTTAAGGTTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATT-AGG-TTAGGG
* * * ** *
33765892 TT----TTTAATCA--AATTAG-GTTAGGGTTAGGGTTTTTAATTAAATTATGTTAGGG
1 TTAGGGTTT-TTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
33765944 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG-TTAGGGTT
33765982 AAATTAGGTT
Statistics
Matches: 271, Mismatches: 17, Indels: 43
0.82 0.05 0.13
Matches are distributed among these distances:
43 4 0.01
44 3 0.01
45 7 0.03
46 17 0.06
47 5 0.02
48 1 0.00
49 1 0.00
50 3 0.01
51 15 0.06
52 12 0.04
53 6 0.02
54 4 0.01
55 2 0.01
56 3 0.01
57 4 0.01
58 120 0.44
59 64 0.24
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (58 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
Found at i:33765744 original size:117 final size:116
Alignment explanation
Indices: 33765614--33765981 Score: 504
Period size: 117 Copynumber: 3.3 Consensus size: 116
33765604 AAGTTAAGGT
33765614 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGT
33765679 TTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
66 TTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
* * *
33765730 TTTAGGTTTTTTAATTAAATTAGGTTAGGGTTAAGGTTTTTAATTAAATTAGGTTAGGGTTAGGG
1 -TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG
33765795 TTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
65 TTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
* * *
33765847 -T----TTTGT-ATT-AA--A--TT-AGGTTAGGGTTTTT-A--AAGTTA----AGGTTTAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGT
* *
33765893 TTTTAATCAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTATGTTAGGG
66 TTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
*
33765944 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTT
1 TTAGGGTTTTTAATTAAATTAGGTTAAGG-TTAGGGTT
33765982 AAATTAGGTT
Statistics
Matches: 226, Mismatches: 12, Indels: 33
0.83 0.04 0.12
Matches are distributed among these distances:
97 59 0.26
98 1 0.00
101 5 0.02
102 4 0.02
103 4 0.02
104 14 0.06
105 2 0.01
106 1 0.00
107 1 0.00
108 2 0.01
109 4 0.02
110 11 0.05
111 4 0.02
115 1 0.00
117 113 0.50
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (116 bp):
TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGT
TTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
Found at i:33765905 original size:45 final size:45
Alignment explanation
Indices: 33765816--33765916 Score: 127
Period size: 45 Copynumber: 2.2 Consensus size: 45
33765806 ATTAGGTTAG
*
33765816 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTGTATTAAATTA
1 GGTTAGGGTTTTTAA-TAAATTAGGTTAGGGTTTTGTATCAAATTA
*
33765862 GGTTAGGGTTTTT-A-AAGTTAAGGTTTAGGGTTTT-TAATCAAATTA
1 GGTTAGGGTTTTTAATAAATT-AGG-TTAGGGTTTTGT-ATCAAATTA
33765907 GGTTAGGGTT
1 GGTTAGGGTT
33765917 AGGGTTTTTA
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
43 4 0.08
44 4 0.08
45 29 0.58
46 13 0.26
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.46
Consensus pattern (45 bp):
GGTTAGGGTTTTTAATAAATTAGGTTAGGGTTTTGTATCAAATTA
Found at i:33766025 original size:25 final size:25
Alignment explanation
Indices: 33765997--33766108 Score: 121
Period size: 25 Copynumber: 4.7 Consensus size: 25
33765987 AGGTTAGAGT
*
33765997 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAATTTCTA
*
33766022 TTTTATTACATCAAAT-AATATC-A
1 TTTTATTACATCAAATAAATTTCTA
* * *
33766045 ---AAATA-ATTCAAA-AATTTTCTA
1 TTTTATTACA-TCAAATAAATTTCTA
33766066 TTTTATTACATCAAATAAATTTCTA
1 TTTTATTACATCAAATAAATTTCTA
33766091 TTTTATTACATCAAATAA
1 TTTTATTACATCAAATAA
33766109 TATAAAAAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
19 1 0.01
20 12 0.17
21 1 0.01
23 1 0.01
24 12 0.17
25 43 0.61
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (25 bp):
TTTTATTACATCAAATAAATTTCTA
Found at i:33766072 original size:69 final size:68
Alignment explanation
Indices: 33765997--33766150 Score: 240
Period size: 69 Copynumber: 2.3 Consensus size: 68
33765987 AGGTTAGAGT
* *
33765997 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAATTC-AAAAATT
1 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATAT-AAAAAAACTCGAAAAA-T
33766061 TTCTA
64 TTCTA
*
33766066 TTTTATTACATCAAATAAATTTCTATTTTATTACATCAAATAATATAAAAAAACTCGAAAAATTT
1 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATAAAAAAACTCGAAAAATTT
33766131 CTA
66 CTA
*
33766134 TTTT-TTACATAAAATAA
1 TTTTATTACATCAAATAA
33766151 TATCAAAATA
Statistics
Matches: 80, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
67 12 0.15
68 18 0.22
69 50 0.62
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.42
Consensus pattern (68 bp):
TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATAAAAAAACTCGAAAAATTT
CTA
Found at i:33766606 original size:18 final size:18
Alignment explanation
Indices: 33766583--33766617 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
33766573 CAGAAAAGGA
*
33766583 TACATATAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
33766601 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
33766618 AAACGCACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:33767278 original size:7 final size:7
Alignment explanation
Indices: 33767268--33767293 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
33767258 TTATATACAT
33767268 AATACTA
1 AATACTA
33767275 AATACTA
1 AATACTA
33767282 AATACTA
1 AATACTA
33767289 AATAC
1 AATAC
33767294 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:33768467 original size:29 final size:29
Alignment explanation
Indices: 33768435--33768523 Score: 77
Period size: 29 Copynumber: 3.3 Consensus size: 29
33768425 AAAAAGGAAA
33768435 TTGAGAGAAAATTGAAATTAAATATGGAT
1 TTGAGAGAAAATTGAAATTAAATATGGAT
** *
33768464 TTGAGAGAATTTTGGAAA-GAAAT-T-GA-
1 TTGAGAGAAAATT-GAAATTAAATATGGAT
33768490 --GAG-G-AAATTGAAATTAAATATGGAT
1 TTGAGAGAAAATTGAAATTAAATATGGAT
*
33768515 TTAAGAGAA
1 TTGAGAGAA
33768524 TTTTGGAAGG
Statistics
Matches: 44, Mismatches: 7, Indels: 18
0.64 0.10 0.26
Matches are distributed among these distances:
21 4 0.09
22 7 0.16
23 2 0.05
24 5 0.11
27 4 0.09
28 2 0.05
29 16 0.36
30 4 0.09
ACGTcount: A:0.47, C:0.00, G:0.24, T:0.29
Consensus pattern (29 bp):
TTGAGAGAAAATTGAAATTAAATATGGAT
Found at i:33768486 original size:51 final size:51
Alignment explanation
Indices: 33768431--33768538 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 51
33768421 TTTAAAAAAG
*
33768431 GAAATTGAGAGAAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAA
1 GAAATTGAGAGAAAATTGAAATTAAATATGGATTTAAGAGAATTTTGGAAA
* *
33768482 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTAAGAGAATTTTGGAAG
1 GAAATTGAGAGAAAATTGAAATTAAATATGGATTTAAGAGAATTTTGGAAA
33768533 GAAATT
1 GAAATT
33768539 TTTTAGAATT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.30
Consensus pattern (51 bp):
GAAATTGAGAGAAAATTGAAATTAAATATGGATTTAAGAGAATTTTGGAAA
Found at i:33775472 original size:19 final size:19
Alignment explanation
Indices: 33775448--33775488 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
33775438 ATCTCATTTC
33775448 ATTCA-TTGCATTTAGATTA
1 ATTCATTTGCATTTA-ATTA
*
33775467 ATTCATTTTCATTTAATTA
1 ATTCATTTGCATTTAATTA
33775486 ATT
1 ATT
33775489 TACTTTAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.54
Consensus pattern (19 bp):
ATTCATTTGCATTTAATTA
Found at i:33776066 original size:30 final size:32
Alignment explanation
Indices: 33776013--33776075 Score: 94
Period size: 30 Copynumber: 2.0 Consensus size: 32
33776003 GTTTCTTTCT
33776013 AGTTTATTCTAGACTTAGGTTATTTTCATTTGTA
1 AGTTTATTCTAGACTT--GTTATTTTCATTTGTA
33776047 AGTTTATTCTAG-CTT-TTATTTTCATTTGT
1 AGTTTATTCTAGACTTGTTATTTTCATTTGT
33776076 CGTGGAACTC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 14 0.48
33 3 0.10
34 12 0.41
ACGTcount: A:0.21, C:0.10, G:0.13, T:0.57
Consensus pattern (32 bp):
AGTTTATTCTAGACTTGTTATTTTCATTTGTA
Found at i:33782859 original size:50 final size:50
Alignment explanation
Indices: 33782734--33783022 Score: 256
Period size: 50 Copynumber: 5.7 Consensus size: 50
33782724 GAATATAACA
* * * ** * * * *
33782734 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGAGATGTTTCTTGTA-C
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* * * ** *
33782783 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* * * ** * *
33782833 TGCCCATGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* * * *
33782883 TGCCAACGCTATGTCCCAGACATGGTCTTACATGCGACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* *
33782933 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAAAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTC---ATCT--A-GG
*
33782989 TGCCAATGCCATGTCCCAGACATGGTCTTACATG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATG
33783023 GGATTTCTTT
Statistics
Matches: 196, Mismatches: 37, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
49 38 0.19
50 120 0.61
53 4 0.02
56 34 0.17
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
Found at i:33785825 original size:2 final size:2
Alignment explanation
Indices: 33785818--33785846 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
33785808 AGTATTTAAA
33785818 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
33785847 AACACATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33786043 original size:17 final size:16
Alignment explanation
Indices: 33786014--33786056 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 16
33786004 AAGTGAATTT
*
33786014 TTAAAAAAAAAAATACA
1 TTAAAAATAAAAAT-CA
33786031 TTACAAAATAAAAATCA
1 TTA-AAAATAAAAATCA
33786048 TTAAAAATA
1 TTAAAAATA
33786057 TATATTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 6 0.25
17 8 0.33
18 10 0.42
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (16 bp):
TTAAAAATAAAAATCA
Found at i:33786779 original size:21 final size:22
Alignment explanation
Indices: 33786753--33786795 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
33786743 ACGAACATCG
33786753 AAGAAA-CAAAAAGAAAAAAAA
1 AAGAAATCAAAAAGAAAAAAAA
* *
33786774 AAGAAATCGAAACGAAAAAAAA
1 AAGAAATCAAAAAGAAAAAAAA
33786796 TCAGATTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.79, C:0.07, G:0.12, T:0.02
Consensus pattern (22 bp):
AAGAAATCAAAAAGAAAAAAAA
Found at i:33787119 original size:12 final size:13
Alignment explanation
Indices: 33787099--33787129 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
33787089 GGGTTTCTAT
*
33787099 TTGGGGTTTGTTA
1 TTGGGTTTTGTTA
33787112 TTGGGTTTTGTTA
1 TTGGGTTTTGTTA
33787125 TTGGG
1 TTGGG
33787130 CTTGGGATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.39, T:0.55
Consensus pattern (13 bp):
TTGGGTTTTGTTA
Found at i:33787246 original size:13 final size:13
Alignment explanation
Indices: 33787211--33787246 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
33787201 TGGACTATTT
33787211 AAATTTGGTTTTA
1 AAATTTGGTTTTA
*
33787224 ACATTT-GTTTTA
1 AAATTTGGTTTTA
33787236 AAATTTGGTTT
1 AAATTTGGTTT
33787247 GGGCTCCAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.28, C:0.03, G:0.14, T:0.56
Consensus pattern (13 bp):
AAATTTGGTTTTA
Found at i:33787589 original size:44 final size:44
Alignment explanation
Indices: 33787524--33787636 Score: 113
Period size: 44 Copynumber: 2.6 Consensus size: 44
33787514 GATCCGACCT
* * * *
33787524 ACTGCAACTTCAGAGG-TATAGGATTCATTG-TTTTAATCCGCTCC
1 ACTGCAACTTCAG-GGAGATAGGATT-AGTGACTTCAATCCGCTCC
* *
33787568 ACTGCAACTTCAGGGAGATAGGATTGGTGACTTCAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAGGATTAGTGACTTCAATCCGCTCC
* * *
33787612 ACTGCAACTTTAGAGAGATAAGATT
1 ACTGCAACTTCAGGGAGATAGGATT
33787637 TGTCATGATT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
43 4 0.07
44 54 0.93
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAGGATTAGTGACTTCAATCCGCTCC
Found at i:33793069 original size:16 final size:16
Alignment explanation
Indices: 33793048--33793080 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
33793038 GCCTAAATCT
*
33793048 TGTGCTAAATCCTTCC
1 TGTGCTAAATCATTCC
33793064 TGTGCTAAATCATTCC
1 TGTGCTAAATCATTCC
33793080 T
1 T
33793081 TGAACAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.39
Consensus pattern (16 bp):
TGTGCTAAATCATTCC
Found at i:33795125 original size:13 final size:13
Alignment explanation
Indices: 33795087--33795125 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 13
33795077 CTGTGGACTA
33795087 TTTAA-ATTTGGT
1 TTTAATATTTGGT
33795099 TTTAATATTT-GT
1 TTTAATATTTGGT
*
33795111 TTTAGTATTTGGT
1 TTTAATATTTGGT
33795124 TT
1 TT
33795126 GGGCCCCGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 16 0.67
13 8 0.33
ACGTcount: A:0.21, C:0.00, G:0.15, T:0.64
Consensus pattern (13 bp):
TTTAATATTTGGT
Found at i:33839133 original size:31 final size:29
Alignment explanation
Indices: 33839095--33839164 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
33839085 ACTACTAAAA
* *
33839095 TAGTCACTTTTGTTTGACTCAGGTTACATTT
1 TAGTCACTTATGTTTGA--AAGGTTACATTT
* *
33839126 TAGTCACTTATGTTTGAAATGTTACGTTT
1 TAGTCACTTATGTTTGAAAGGTTACATTT
33839155 TAGTCACTTA
1 TAGTCACTTA
33839165 CGTTATCGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.54
31 16 0.46
ACGTcount: A:0.23, C:0.14, G:0.16, T:0.47
Consensus pattern (29 bp):
TAGTCACTTATGTTTGAAAGGTTACATTT
Found at i:33857176 original size:77 final size:77
Alignment explanation
Indices: 33857049--33857202 Score: 299
Period size: 77 Copynumber: 2.0 Consensus size: 77
33857039 CCTTTTTATT
33857049 GGGAATGATCGTTGATCTTGTGATGATTAGCCCATGAAAGATGGAAAGTGTATTTTTCGAGCTTC
1 GGGAATGATCGTTGATCTTGTGATGATTAGCCCATGAAAGATGGAAAGTGTATTTTTCGAGCTTC
33857114 TATATTTCCACC
66 TATATTTCCACC
33857126 GGGAATGATCGTTGATCTTGTGATGATTAGCCCATGAAAGATGGAAAGTGTATTTTTCGAGCTTC
1 GGGAATGATCGTTGATCTTGTGATGATTAGCCCATGAAAGATGGAAAGTGTATTTTTCGAGCTTC
*
33857191 TATCTTTCCACC
66 TATATTTCCACC
33857203 AACGCGCTGA
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (77 bp):
GGGAATGATCGTTGATCTTGTGATGATTAGCCCATGAAAGATGGAAAGTGTATTTTTCGAGCTTC
TATATTTCCACC
Found at i:33857638 original size:18 final size:18
Alignment explanation
Indices: 33857617--33857664 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
33857607 ATTTAGAGAG
*
33857617 TTGAGAGAATAGAAAGAT
1 TTGAGAGAATAGAAAAAT
*
33857635 TTGAGAAAATAGAAAAAT
1 TTGAGAGAATAGAAAAAT
33857653 TTGAGAGAATAG
1 TTGAGAGAATAG
33857665 GATGTGTGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.25, T:0.23
Consensus pattern (18 bp):
TTGAGAGAATAGAAAAAT
Found at i:33860596 original size:22 final size:22
Alignment explanation
Indices: 33860565--33860642 Score: 102
Period size: 22 Copynumber: 3.5 Consensus size: 22
33860555 CAAACTAACT
* * *
33860565 TAACGAACTAAACCCTCATGGC
1 TAACGTACTAAGCTCTCATGGC
33860587 TAACGTACTAAGCTCTCATGGC
1 TAACGTACTAAGCTCTCATGGC
**
33860609 TAACGTACTAAGCTCTCATGTT
1 TAACGTACTAAGCTCTCATGGC
*
33860631 TCACGTACTAAG
1 TAACGTACTAAG
33860643 TGTGAGCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (22 bp):
TAACGTACTAAGCTCTCATGGC
Found at i:33876092 original size:108 final size:107
Alignment explanation
Indices: 33875904--33876097 Score: 262
Period size: 108 Copynumber: 1.8 Consensus size: 107
33875894 CATGACGATG
** * * * * *
33875904 GTATATGGTGTAAGACCATAGATGAAAGATGCTATAGAGTCTGGTATGAGGTACATAGTGTAAGA
1 GTATATGGCATAAGACAATAGATGAAAGATGCCATAGAGGCAGGTATAAGGTACATAGTGTAAGA
* *
33875969 CTATGGATGAAAGACGCCATGACAACATAGTACACGATAAAT
66 CCATAGATGAAAGACGCCATGACAACATAGTACACGATAAAT
* * * *
33876011 GTATATGGCATAAGACAATGGATGAAAGATGCCATGGAGGCAAGGTATAAGGTATATGGTGTAAG
1 GTATATGGCATAAGACAATAGATGAAAGATGCCATAGAGGC-AGGTATAAGGTACATAGTGTAAG
33876076 ACCATAGATGAAAGACGCCATG
65 ACCATAGATGAAAGACGCCATG
33876098 TCATCATAAG
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
107 34 0.47
108 39 0.53
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (107 bp):
GTATATGGCATAAGACAATAGATGAAAGATGCCATAGAGGCAGGTATAAGGTACATAGTGTAAGA
CCATAGATGAAAGACGCCATGACAACATAGTACACGATAAAT
Found at i:33882531 original size:13 final size:13
Alignment explanation
Indices: 33882513--33882538 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33882503 CCTAAATGTA
33882513 GTATACTTATTTT
1 GTATACTTATTTT
33882526 GTATACTTATTTT
1 GTATACTTATTTT
33882539 TTTTCGAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (13 bp):
GTATACTTATTTT
Found at i:33885353 original size:17 final size:17
Alignment explanation
Indices: 33885331--33885375 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
33885321 TTAGATTGAG
33885331 AAAATTATTTAAT-TAAA
1 AAAATTATTT-ATCTAAA
33885348 AAAATTAATTTATCTAAA
1 AAAATT-ATTTATCTAAA
*
33885366 TAAATTATTT
1 AAAATTATTT
33885376 TAATAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATTATTTATCTAAA
Found at i:33885365 original size:18 final size:17
Alignment explanation
Indices: 33885331--33885382 Score: 52
Period size: 18 Copynumber: 3.0 Consensus size: 17
33885321 TTAGATTGAG
33885331 AAAATT-ATTTAATTAAA
1 AAAATTAATTT-ATTAAA
33885348 AAAATTAATTTATCTAAA
1 AAAATTAATTTAT-TAAA
* * *
33885366 TAAATTATTTTAATAAA
1 AAAATTAATTTATTAAA
33885383 TAATATTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 12 0.40
18 18 0.60
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
AAAATTAATTTATTAAA
Found at i:33899967 original size:72 final size:72
Alignment explanation
Indices: 33899850--33900004 Score: 292
Period size: 72 Copynumber: 2.2 Consensus size: 72
33899840 GGCGTTTACC
33899850 GAAAGCGCCGCAAAAAACCTAAGCTCGATGACGCCGTTTTCTGAGCTTTCGAAGATTTAGCGTCA
1 GAAAGCGCCGCAAAAAACCTAAGCTCGATGACGCCGTTTTCTGAGCTTTCGAAGATTTAGCGTCA
33899915 TTTTTGA
66 TTTTTGA
* *
33899922 GAAAGCGCCGCAAAAAACCTAAGCTCGATGACGCCGTTTTCTGAGCTTTCGGAGATTTAGCGTCG
1 GAAAGCGCCGCAAAAAACCTAAGCTCGATGACGCCGTTTTCTGAGCTTTCGAAGATTTAGCGTCA
33899987 TTTTTGA
66 TTTTTGA
33899994 GAAAGCGCCGC
1 GAAAGCGCCGC
33900005 TAATGCTCAG
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 81 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (72 bp):
GAAAGCGCCGCAAAAAACCTAAGCTCGATGACGCCGTTTTCTGAGCTTTCGAAGATTTAGCGTCA
TTTTTGA
Found at i:33900039 original size:41 final size:41
Alignment explanation
Indices: 33899977--33900323 Score: 514
Period size: 41 Copynumber: 8.4 Consensus size: 41
33899967 CTTTCGGAGA
* *
33899977 TTTAGCGTCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGC
* *
33900018 TTTAGCAGCGTTTTTGGGAAAGTGCCGCTTTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGC--TAATGCTCAGGGC
* *
33900061 TTTAGTGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGC
* * * *
33900102 TTTAGTGACGTTTTTGGGAAAGCGCTGCTAATGTTCAGGGC
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGC
** *
33900143 TTTAATGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAAGGC
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGC
33900184 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGC
* *
33900225 TTTAGCGGCGTTTTTAGGAAAGCGTCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGC
* *
33900266 TTTAGCGGCGTTTTTAGGAAAGCGTCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGC
33900307 TTTTAGCGGCGTTTTTG
1 -TTTAGCGGCGTTTTTG
33900324 ATAAAACGGA
Statistics
Matches: 280, Mismatches: 23, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
41 228 0.81
42 15 0.05
43 37 0.13
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGC
Found at i:33900352 original size:123 final size:121
Alignment explanation
Indices: 33899977--33900392 Score: 471
Period size: 123 Copynumber: 3.4 Consensus size: 121
33899967 CTTTCGGAGA
* * * *
33899977 TTTAGCGTCGTTTTT-GAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCAGCGTTTTTGGGAAAGT
1 TTTAGCGGCGTTTTTAG-GAAAGCGCAGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGC
*
33900041 GCCGCTTTAATGCTCAGGGCTTTAGTGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGC
65 GCCGC--TAATGCTCAGGGCTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTCA-GGC
* * * * * **
33900102 TTTAGTGACGTTTTTGGGAAAGCGCTGCTAATGTTCAGGGCTTTAATGGCGTTTTTGGGAAAGCG
1 TTTAGCGGCGTTTTTAGGAAAGCGCAGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCG
* *
33900167 CCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGC
66 CCGCTAATGCTCAGGGCTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTCA-GGC
*
33900225 TTTAGCGGCGTTTTTAGGAAAGCGTC-GCTAATGCTCAGGGCTTTAGCGGCGTTTTTAGGAAAGC
1 TTTAGCGGCGTTTTTAGGAAAGCG-CAGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGC
* * ** * **
33900289 GTCGCTAATGCTCAGGGCTTTTAGCGGCGTTTTTGATAAAACGGAGCGAATGCTCTA-TT
65 GCCGCTAATGCTCAGGGC-TTTAGCGGCGTTTTTGA-AAAGCGCCGCTAATGCTC-AGGC
* * *
33900348 TTTAGCGGAGTTTTCTA-AAAAGCGCAGCTAATGCTCAGGGATTTA
1 TTTAGCGGCGTTTT-TAGGAAAGCGCAGCTAATGCTCAGGGCTTTA
33900393 AAATAATTTA
Statistics
Matches: 254, Mismatches: 30, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
122 1 0.00
123 160 0.63
124 32 0.13
125 60 0.24
126 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.31
Consensus pattern (121 bp):
TTTAGCGGCGTTTTTAGGAAAGCGCAGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCG
CCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTCAGGC
Found at i:33900361 original size:82 final size:80
Alignment explanation
Indices: 33900006--33900392 Score: 341
Period size: 82 Copynumber: 4.7 Consensus size: 80
33899996 AAGCGCCGCT
* * * *
33900006 AATGCTCAGGGCTTTAGCAGCGTTTTTGGGAAAGTGCCGCTTTAATGCTCAGGGCTTTAGTGGCG
1 AATGCTCA-GGCTTTAGCGGCGTTTTTAGGAAAGCG-CGC--TAATGCTCAGGGCTTTAGCGGCG
** *
33900071 TTTTT-GGAAAAGCGCCGCT
62 TTTTTAGGAAAA-CGGAGCG
* * * * **
33900090 AATGCTCAGGGCTTTAGTGACGTTTTTGGGAAAGCGCTGCTAATGTTCAGGGCTTTAATGGCGTT
1 AATGCTCA-GGCTTTAGCGGCGTTTTTAGGAAAGCGC-GCTAATGCTCAGGGCTTTAGCGGCGTT
* * ** *
33900155 TTTGGGAAAGCGCCGCT
64 TTTAGGAAAACGGAGCG
*
33900172 AATGCTCAAGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTT
1 AATGCTC-AGGCTTTAGCGGCGTTTTTAGGAAAGCG-CGCTAATGCTCAGGGCTTTAGCGGCGTT
* ** *
33900237 TTTAGGAAAGCGTCGCT
64 TTTAGGAAAACGGAGCG
33900254 AATGCTCAGGGCTTTAGCGGCGTTTTTAGGAAAGCGTCGCTAATGCTCAGGGCTTTTAGCGGCGT
1 AATGCTCA-GGCTTTAGCGGCGTTTTTAGGAAAGCG-CGCTAATGCTCAGGGC-TTTAGCGGCGT
*
33900319 TTTT-GATAAAACGGAGCG
63 TTTTAG-GAAAACGGAGCG
** * * *
33900337 AATGCTCTA-TTTTTAGCGGAGTTTTCTA-AAAAGCGCAGCTAATGCTCAGGGATTTA
1 AATGCTC-AGGCTTTAGCGGCGTTTT-TAGGAAAGCGC-GCTAATGCTCAGGGCTTTA
33900393 AAATAATTTA
Statistics
Matches: 267, Mismatches: 26, Indels: 23
0.84 0.08 0.07
Matches are distributed among these distances:
81 6 0.02
82 187 0.70
83 39 0.15
84 35 0.13
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30
Consensus pattern (80 bp):
AATGCTCAGGCTTTAGCGGCGTTTTTAGGAAAGCGCGCTAATGCTCAGGGCTTTAGCGGCGTTTT
TAGGAAAACGGAGCG
Found at i:33900381 original size:40 final size:40
Alignment explanation
Indices: 33900307--33900383 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 40
33900297 TGCTCAGGGC
* *
33900307 TTTTAGCGGCGTTTTTGATAAAACGGAGCGAATGCTCTAT
1 TTTTAGCGGAGTTTTTGATAAAACGCAGCGAATGCTCTAT
*
33900347 TTTTAGCGGAGTTTTCT-A-AAAAGCGCAGCTAATGCTC
1 TTTTAGCGGAGTTTT-TGATAAAA-CGCAGCGAATGCTC
33900384 AGGGATTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 4 0.12
40 27 0.84
41 1 0.03
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (40 bp):
TTTTAGCGGAGTTTTTGATAAAACGCAGCGAATGCTCTAT
Found at i:33900584 original size:14 final size:14
Alignment explanation
Indices: 33900565--33900725 Score: 126
Period size: 14 Copynumber: 10.9 Consensus size: 14
33900555 TATCACTATA
*
33900565 GTTTAGGGTTTTTG
1 GTTTAGGGTTTATG
*
33900579 GTTTAGGGTATATG
1 GTTTAGGGTTTATG
*
33900593 GTTTAGAGTTTATG
1 GTTTAGGGTTTATG
* *
33900607 GTTTATGGATTATGG
1 GTTTAGGGTTTAT-G
*
33900622 GTTTAGGGGTTATG
1 GTTTAGGGTTTATG
* *
33900636 ATTTATGGTTTATG
1 GTTTAGGGTTTATG
*
33900650 GTTTATGGTTTATG
1 GTTTAGGGTTTATG
*
33900664 GTTTAAAGGCTGAGGTTTAAG
1 GTTT--A----G-GGTTTATG
33900685 GTTTAGAGG-TTATG
1 GTTTAG-GGTTTATG
*
33900699 TGTTAAGGGTTTATG
1 -GTTTAGGGTTTATG
33900714 GTTTAGGGTTTA
1 GTTTAGGGTTTA
33900726 GATTAACTAG
Statistics
Matches: 119, Mismatches: 18, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
14 80 0.67
15 26 0.22
16 1 0.01
19 1 0.01
21 11 0.09
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:33900610 original size:7 final size:7
Alignment explanation
Indices: 33900565--33900725 Score: 112
Period size: 7 Copynumber: 22.7 Consensus size: 7
33900555 TATCACTATA
*
33900565 GTTTAGG
1 GTTTATG
*
33900572 GTTTTTG
1 GTTTATG
*
33900579 GTTTAGG
1 GTTTATG
*
33900586 GTATATG
1 GTTTATG
33900593 GTTTA-G
1 GTTTATG
33900599 AGTTTATG
1 -GTTTATG
33900607 GTTTATG
1 GTTTATG
*
33900614 GATTATGG
1 GTTTAT-G
*
33900622 GTTTAGG
1 GTTTATG
*
33900629 GGTTATG
1 GTTTATG
*
33900636 ATTTATG
1 GTTTATG
33900643 GTTTATG
1 GTTTATG
33900650 GTTTATG
1 GTTTATG
33900657 GTTTATG
1 GTTTATG
*
33900664 GTTTAAAG
1 GTTT-ATG
* *
33900672 GCTGA-G
1 GTTTATG
*
33900678 GTTTAAG
1 GTTTATG
33900685 GTTTA-G
1 GTTTATG
*
33900691 AGGTTATG
1 -GTTTATG
* *
33900699 TGTTAAGG
1 -GTTTATG
33900707 GTTTATG
1 GTTTATG
*
33900714 GTTTAGG
1 GTTTATG
33900721 GTTTA
1 GTTTA
33900726 GATTAACTAG
Statistics
Matches: 119, Mismatches: 28, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
6 6 0.05
7 98 0.82
8 15 0.13
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (7 bp):
GTTTATG
Found at i:33901015 original size:21 final size:22
Alignment explanation
Indices: 33900990--33901088 Score: 98
Period size: 21 Copynumber: 4.6 Consensus size: 22
33900980 TAGGGATTCT
*
33900990 GGGTTAGGGA-TTATGGTTTAA
1 GGGTTAGGGATTTAAGGTTTAA
33901011 GGGTT-GGGATTTAAGGTTTAA
1 GGGTTAGGGATTTAAGGTTTAA
* * *
33901032 GGGTTA-AGAGTTAAGGGTTAA
1 GGGTTAGGGATTTAAGGTTTAA
* *
33901053 GAGTTAGGGATTTAGGGTTT-A
1 GGGTTAGGGATTTAAGGTTTAA
*
33901074 GGATTTAGGGATTTA
1 GG-GTTAGGGATTTA
33901089 GGGGTCAGGT
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
20 4 0.06
21 39 0.62
22 20 0.32
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.36
Consensus pattern (22 bp):
GGGTTAGGGATTTAAGGTTTAA
Found at i:33901069 original size:8 final size:8
Alignment explanation
Indices: 33901056--33901091 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
33901046 GGGTTAAGAG
33901056 TTAGGGAT
1 TTAGGGAT
33901064 TTAGGG-T
1 TTAGGGAT
33901071 TTA-GGAT
1 TTAGGGAT
33901078 TTAGGGAT
1 TTAGGGAT
33901086 TTAGGG
1 TTAGGG
33901092 GTCAGGTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 2 0.08
7 8 0.31
8 16 0.62
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.39
Consensus pattern (8 bp):
TTAGGGAT
Found at i:33901073 original size:7 final size:7
Alignment explanation
Indices: 33900993--33901115 Score: 67
Period size: 7 Copynumber: 17.6 Consensus size: 7
33900983 GGATTCTGGG
*
33900993 TTAGGGA
1 TTAGGGT
*
33901000 TTATGGT
1 TTAGGGT
33901007 TTAAGGG-
1 TT-AGGGT
33901014 TT-GGGAT
1 TTAGGG-T
*
33901021 TTAAGGT
1 TTAGGGT
33901028 TTAAGGGT
1 TT-AGGGT
* *
33901036 TAAGAGT
1 TTAGGGT
*
33901043 TAAGGGT
1 TTAGGGT
* *
33901050 TAAGAG-
1 TTAGGGT
33901056 TTAGGGAT
1 TTAGGG-T
33901064 TTAGGGT
1 TTAGGGT
*
33901071 TTAGGAT
1 TTAGGGT
33901078 TTAGGGAT
1 TTAGGG-T
*
33901086 TTAGGGG
1 TTAGGGT
*
33901093 TCA-GG-
1 TTAGGGT
33901098 TTAGGGT
1 TTAGGGT
33901105 TTAGGGT
1 TTAGGGT
33901112 TTAG
1 TTAG
33901116 ATTAATTAGT
Statistics
Matches: 90, Mismatches: 16, Indels: 20
0.71 0.13 0.16
Matches are distributed among these distances:
5 5 0.06
6 8 0.09
7 54 0.60
8 23 0.26
ACGTcount: A:0.24, C:0.01, G:0.38, T:0.37
Consensus pattern (7 bp):
TTAGGGT
Found at i:33901319 original size:7 final size:7
Alignment explanation
Indices: 33901281--33901427 Score: 93
Period size: 7 Copynumber: 20.7 Consensus size: 7
33901271 ATAGTTTAGA
*
33901281 GTTTTTG
1 GTTTATG
*
33901288 GTTTAGG
1 GTTTATG
*
33901295 GTATATG
1 GTTTATG
33901302 GTTTA-G
1 GTTTATG
33901308 AGTTTATG
1 -GTTTATG
33901316 GTTTATG
1 GTTTATG
*
33901323 GATTATGG
1 GTTTAT-G
*
33901331 GTTTAGG
1 GTTTATG
*
33901338 GGTTATG
1 GTTTATG
*
33901345 ATTTATG
1 GTTTATG
33901352 GTTTATG
1 GTTTATG
33901359 GTTTATG
1 GTTTATG
*
33901366 GTTTAAAG
1 GTTT-ATG
* *
33901374 GCTGA-G
1 GTTTATG
*
33901380 GTTTAAG
1 GTTTATG
33901387 GTTTA-G
1 GTTTATG
*
33901393 AGGTTATG
1 -GTTTATG
* *
33901401 TGTTAAGG
1 -GTTTATG
33901409 GTTTATG
1 GTTTATG
*
33901416 GTTTAGG
1 GTTTATG
33901423 GTTTA
1 GTTTA
33901428 GATTAACTAG
Statistics
Matches: 107, Mismatches: 26, Indels: 14
0.73 0.18 0.10
Matches are distributed among these distances:
6 6 0.06
7 86 0.80
8 15 0.14
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.47
Consensus pattern (7 bp):
GTTTATG
Found at i:33901343 original size:29 final size:28
Alignment explanation
Indices: 33901298--33901363 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 28
33901288 GTTTAGGGTA
* *
33901298 TATGGTTTAGAGTTTATGGTTTATGGAT
1 TATGGTTTAGAGGTTATGATTTATGGAT
* *
33901326 TATGGGTTTAGGGGTTATGATTTATGGTT
1 TAT-GGTTTAGAGGTTATGATTTATGGAT
33901355 TATGGTTTA
1 TATGGTTTA
33901364 TGGTTTAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 9 0.27
29 24 0.73
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (28 bp):
TATGGTTTAGAGGTTATGATTTATGGAT
Found at i:33901717 original size:21 final size:22
Alignment explanation
Indices: 33901692--33901793 Score: 104
Period size: 21 Copynumber: 4.8 Consensus size: 22
33901682 TAGGGATTCT
*
33901692 GGGTTAGGGA-TTATGGTTTAA
1 GGGTTAGGGATTTAAGGTTTAA
33901713 GGGTT-GGGATTTAAGGTTTAA
1 GGGTTAGGGATTTAAGGTTTAA
* * *
33901734 GGGTTA-AGAGTTAAGGGTTAA
1 GGGTTAGGGATTTAAGGTTTAA
* *
33901755 GAGTTAGGGATTTAGGGTTT-A
1 GGGTTAGGGATTTAAGGTTTAA
*
33901776 GGATTTAGGGATTTAAGG
1 GG-GTTAGGGATTTAAGG
33901794 GTCAGGTTAG
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
20 4 0.06
21 39 0.60
22 22 0.34
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.35
Consensus pattern (22 bp):
GGGTTAGGGATTTAAGGTTTAA
Found at i:33901771 original size:8 final size:8
Alignment explanation
Indices: 33901758--33901790 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
33901748 GGGTTAAGAG
33901758 TTAGGGAT
1 TTAGGGAT
33901766 TTAGGG-T
1 TTAGGGAT
33901773 TTA-GGAT
1 TTAGGGAT
33901780 TTAGGGAT
1 TTAGGGAT
33901788 TTA
1 TTA
33901791 AGGGTCAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 2 0.09
7 8 0.35
8 13 0.57
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.42
Consensus pattern (8 bp):
TTAGGGAT
Found at i:33901775 original size:7 final size:7
Alignment explanation
Indices: 33901695--33901817 Score: 60
Period size: 7 Copynumber: 17.6 Consensus size: 7
33901685 GGATTCTGGG
*
33901695 TTAGGGA
1 TTAGGGT
*
33901702 TTATGGT
1 TTAGGGT
33901709 TTAAGGG-
1 TT-AGGGT
33901716 TT-GGGAT
1 TTAGGG-T
*
33901723 TTAAGGT
1 TTAGGGT
33901730 TTAAGGGT
1 TT-AGGGT
* *
33901738 TAAGAGT
1 TTAGGGT
*
33901745 TAAGGGT
1 TTAGGGT
* *
33901752 TAAGAG-
1 TTAGGGT
33901758 TTAGGGAT
1 TTAGGG-T
33901766 TTAGGGT
1 TTAGGGT
*
33901773 TTAGGAT
1 TTAGGGT
33901780 TTAGGGAT
1 TTAGGG-T
33901788 TTAAGGG-
1 TT-AGGGT
*
33901795 TCA-GG-
1 TTAGGGT
33901800 TTAGGGT
1 TTAGGGT
33901807 TTAGGGT
1 TTAGGGT
33901814 TTAG
1 TTAG
33901818 ATTAATTAGT
Statistics
Matches: 90, Mismatches: 15, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
5 7 0.08
6 7 0.08
7 53 0.59
8 19 0.21
9 4 0.04
ACGTcount: A:0.25, C:0.01, G:0.37, T:0.37
Consensus pattern (7 bp):
TTAGGGT
Found at i:33902022 original size:7 final size:7
Alignment explanation
Indices: 33901984--33902130 Score: 102
Period size: 7 Copynumber: 20.7 Consensus size: 7
33901974 ATAGTTTAGA
*
33901984 GTTTTTG
1 GTTTATG
*
33901991 GTTTAGG
1 GTTTATG
*
33901998 GTATATG
1 GTTTATG
33902005 GTTTA-G
1 GTTTATG
33902011 AGTTTATG
1 -GTTTATG
33902019 GTTTATG
1 GTTTATG
*
33902026 GATTATGG
1 GTTTAT-G
*
33902034 GTTTAGG
1 GTTTATG
*
33902041 GGTTATG
1 GTTTATG
33902048 GTTTATG
1 GTTTATG
33902055 GTTTATG
1 GTTTATG
33902062 GTTTATG
1 GTTTATG
*
33902069 GTTTAAAG
1 GTTT-ATG
* *
33902077 GCTGA-G
1 GTTTATG
*
33902083 GTTTAAG
1 GTTTATG
33902090 GTTTA-G
1 GTTTATG
*
33902096 AGGTTATG
1 -GTTTATG
* *
33902104 TGTTAAGG
1 -GTTTATG
33902112 GTTTATG
1 GTTTATG
*
33902119 GTTTAGG
1 GTTTATG
33902126 GTTTA
1 GTTTA
33902131 GATTAACTAG
Statistics
Matches: 109, Mismatches: 24, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
6 6 0.06
7 88 0.81
8 15 0.14
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (7 bp):
GTTTATG
Found at i:33902046 original size:29 final size:28
Alignment explanation
Indices: 33901977--33902066 Score: 101
Period size: 29 Copynumber: 3.2 Consensus size: 28
33901967 TATCACTATA
* * *
33901977 GTTTAGAGTTTTTGGTTTA-GGGTATATG
1 GTTTAGAGGTTATGGTTTATGGAT-TATG
*
33902005 GTTTAGAGTTTATGGTTTATGGATTATGG
1 GTTTAGAGGTTATGGTTTATGGATTAT-G
* *
33902034 GTTTAGGGGTTATGGTTTATGGTTTATG
1 GTTTAGAGGTTATGGTTTATGGATTATG
33902062 GTTTA
1 GTTTA
33902067 TGGTTTAAAG
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 27 0.49
29 28 0.51
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (28 bp):
GTTTAGAGGTTATGGTTTATGGATTATG
Found at i:33902241 original size:703 final size:703
Alignment explanation
Indices: 33900542--33902666 Score: 4092
Period size: 702 Copynumber: 3.0 Consensus size: 703
33900532 TAATTTTAAA
*
33900542 ATATTGAATTAATTATCACTATAGTTTAGGGTTTTTGGTTTAGGGTATATGGTTTAGAGTTTATG
1 ATATTGAATTAATTATCACTATAGTTTAGAGTTTTTGGTTTAGGGTATATGGTTTAGAGTTTATG
33900607 GTTTATGGATTATGGGTTTAGGGGTTATGATTTATGGTTTATGGTTTATGGTTTATGGTTTAAAG
66 GTTTATGGATTATGGGTTTA-GGG----G--TTATGGTTTATGGTTTATGGTTTATGGTTTAAAG
33900672 GCTGAGGTTTAAGGTTTAGAGGTTATGTGTTAAGGGTTTATGGTTTAGGGTTTAGATTAACTAGT
124 GCTGAGGTTTAAGGTTTAGAGGTTATGTGTTAAGGGTTTATGGTTTAGGGTTTAGATTAACTAGT
33900737 GTTTTCTAATTTATATATTAATTAATTTCTTATATAATTGTAAAAGAGATAATTTTAATTTGGTT
189 GTTTTCTAATTTATATATTAATTAATTTCTTATATAATTGTAAAAGAGATAATTTTAATTTGGTT
33900802 TTTCAAAATCGTGTGAAGATTTGGTTCTTCAAAATCGATATAAGCTATATCCAAGGATATCCCCA
254 TTTCAAAATCGTGTGAAGATTTGGTTCTTCAAAATCGATATAAGCTATATCCAAGGATATCCCCA
33900867 TCTTATCCCATCCCGGTTCAATATTTTTAGTGCTCAGTTCATTTTTTTATCCAGTTCAGTTTTTT
319 TCTTATCCCATCCCGGTTCAATATTTTTAGTGCTCAGTTCATTTTTTTATCCAGTTCAGTTTTTT
33900932 GCATGTTTTGCCTTGCCCCCGCCATGATCAAATAATTATATATGGATTTAGGGATTCTGGGTTAG
384 GCATGTTTTGCCTTGCCCCCGCCATGATCAAATAATTATATATGGATTTAGGGATTCTGGGTTAG
33900997 GGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAAGGGTTAAGAGTTAAGGGTTAAGAGTTAGGG
449 GGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAAGGGTTAAGAGTTAAGGGTTAAGAGTTAGGG
*
33901062 ATTTAGGGTTTAGGATTTAGGGATTTAGGGGTCAGGTTAGGGTTTAGGGTTTAGATTAATTAGTT
514 ATTTAGGGTTTAGGATTTAGGGATTTAAGGGTCAGGTTAGGGTTTAGGGTTTAGATTAATTAGTT
33901127 TTTTAAATTTATATATTAAATATGTTCTTATATAATTGTAAAA-A-ACTAATAATAAATTTAATA
579 TTTTAAATTTATATATTAAATATGTTCTTATATAATTGTAAAAGAGA-TAATAATAAATTTAATA
33901190 TATTAAAATTATGAGTATAGTTTATATTATTTAAGAGATATATAATAGATAGACTTTATGT
643 TATTAAAATTATGAGTATAGTTTATATTATTTAAGAGATATATAATAGATAGACTTTATGT
33901251 ATATTGAATTAATTATCACTATAGTTTAGAGTTTTTGGTTTAGGGTATATGGTTTAGAGTTTATG
1 ATATTGAATTAATTATCACTATAGTTTAGAGTTTTTGGTTTAGGGTATATGGTTTAGAGTTTATG
*
33901316 GTTTATGGATTATGGGTTTAGGGGTTATGATTTATGGTTTATGGTTTATGGTTTAAAGGCTGAGG
66 GTTTATGGATTATGGGTTTAGGGGTTATGGTTTATGGTTTATGGTTTATGGTTTAAAGGCTGAGG
33901381 TTTAAGGTTTAGAGGTTATGTGTTAAGGGTTTATGGTTTAGGGTTTAGATTAACTAGTGTTTTCT
131 TTTAAGGTTTAGAGGTTATGTGTTAAGGGTTTATGGTTTAGGGTTTAGATTAACTAGTGTTTTCT
33901446 AATTTATATATTAATTAATTTCTTATATAATTGTAAAAGAGATAATTTTAATTTGGTTTTTCAAA
196 AATTTATATATTAATTAATTTCTTATATAATTGTAAAAGAGATAATTTTAATTTGGTTTTTCAAA
*
33901511 ATCGTGTGAAGATTTGGTTCTTCAAAATCAATATAAGCTATATCCAAGGATATCCCCATCTTATC
261 ATCGTGTGAAGATTTGGTTCTTCAAAATCGATATAAGCTATATCCAAGGATATCCCCATCTTATC
*
33901576 CCATCCCGGTTCAATATTTTTAGTGCTTAGTTCATTTTTTTATCCAGTTCAGTTTTTTGCATGTT
326 CCATCCCGGTTCAATATTTTTAGTGCTCAGTTCATTTTTTTATCCAGTTCAGTTTTTTGCATGTT
33901641 TTGCCTTGCCCCCGCCATGATCAAATAATTATATATGGATTTAGGGATTCTGGGTTAGGGATTAT
391 TTGCCTTGCCCCCGCCATGATCAAATAATTATATATGGATTTAGGGATTCTGGGTTAGGGATTAT
33901706 GGTTTAAGGGTTGGGATTTAAGGTTTAAGGGTTAAGAGTTAAGGGTTAAGAGTTAGGGATTTAGG
456 GGTTTAAGGGTTGGGATTTAAGGTTTAAGGGTTAAGAGTTAAGGGTTAAGAGTTAGGGATTTAGG
33901771 GTTTAGGATTTAGGGATTTAAGGGTCAGGTTAGGGTTTAGGGTTTAGATTAATTAGTTTTTTAAA
521 GTTTAGGATTTAGGGATTTAAGGGTCAGGTTAGGGTTTAGGGTTTAGATTAATTAGTTTTTTAAA
33901836 TTTATATATTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTAATATATTAAAA
586 TTTATATATTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTAATATATTAAAA
33901901 TTATGAGTATAGTTTATATTATTTAAGAGATATATAATAGATAGACTTTATGT
651 TTATGAGTATAGTTTATATTATTTAAGAGATATATAATAGATAGACTTTATGT
33901954 ATATTGAATTAATTATCACTATAGTTTAGAGTTTTTGGTTTAGGGTATATGGTTTAGAGTTTATG
1 ATATTGAATTAATTATCACTATAGTTTAGAGTTTTTGGTTTAGGGTATATGGTTTAGAGTTTATG
33902019 GTTTATGGATTATGGGTTTAGGGGTTATGGTTTATGGTTTATGGTTTATGGTTTAAAGGCTGAGG
66 GTTTATGGATTATGGGTTTAGGGGTTATGGTTTATGGTTTATGGTTTATGGTTTAAAGGCTGAGG
33902084 TTTAAGGTTTAGAGGTTATGTGTTAAGGGTTTATGGTTTAGGGTTTAGATTAACTAGTGTTTTCT
131 TTTAAGGTTTAGAGGTTATGTGTTAAGGGTTTATGGTTTAGGGTTTAGATTAACTAGTGTTTTCT
*
33902149 AATTTATATATTAATTAACTTCTTATATAATTGTAAAAGAGATAATTTTAATTTGGTTTTTCAAA
196 AATTTATATATTAATTAATTTCTTATATAATTGTAAAAGAGATAATTTTAATTTGGTTTTTCAAA
33902214 ATCGTGTGAAGATTTGGTTCTTCAAAATCGATATAAGCTATATCCAAGGATATCCCCATCTTATC
261 ATCGTGTGAAGATTTGGTTCTTCAAAATCGATATAAGCTATATCCAAGGATATCCCCATCTTATC
33902279 CCATCCCGGTTCAATATTTTTAGTGCTCAGTTCATTTTTTTTATCCAGTTCAGTTTTTTGCATGT
326 CCATCCCGGTTCAATATTTTTAGTGCTCAGTTCA-TTTTTTTATCCAGTTCAGTTTTTTGCATGT
33902344 TTTGCCTTGCCCCCGCCATGATCAAATAATTATATATGGATTTAGGGATTCTGGGTTAGGGATTA
390 TTTGCCTTGCCCCCGCCATGATCAAATAATTATATATGGATTTAGGGATTCTGGGTTAGGGATTA
33902409 TGGTTTAAGGGTTGGGATTTAAGGTTTAAGGGTTAAGAGTTAAGGGTTAAGAGTTAGGGATTTAG
455 TGGTTTAAGGGTTGGGATTTAAGGTTTAAGGGTTAAGAGTTAAGGGTTAAGAGTTAGGGATTTAG
33902474 GGTTTAGGATTTAGGGATTTAAGGGTCAGGTTAGGGTTTAGGGTTTAGATTAATTAGTTTTTTAA
520 GGTTTAGGATTTAGGGATTTAAGGGTCAGGTTAGGGTTTAGGGTTTAGATTAATTAGTTTTTTAA
33902539 ATTTATATATTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTAATATATTAAA
585 ATTTATATATTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTAATATATTAAA
*
33902604 ATTATGAGTATAGTTTATATTATTTAAGAGATATATAATAGATAAACTTTATGT
650 ATTATGAGTATAGTTTATATTATTTAAGAGATATATAATAGATAGACTTTATGT
33902658 ATATTGAAT
1 ATATTGAAT
33902667 GGCTAATTTA
Statistics
Matches: 1403, Mismatches: 10, Indels: 11
0.99 0.01 0.01
Matches are distributed among these distances:
702 528 0.38
703 434 0.31
704 354 0.25
708 3 0.00
709 84 0.06
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (703 bp):
ATATTGAATTAATTATCACTATAGTTTAGAGTTTTTGGTTTAGGGTATATGGTTTAGAGTTTATG
GTTTATGGATTATGGGTTTAGGGGTTATGGTTTATGGTTTATGGTTTATGGTTTAAAGGCTGAGG
TTTAAGGTTTAGAGGTTATGTGTTAAGGGTTTATGGTTTAGGGTTTAGATTAACTAGTGTTTTCT
AATTTATATATTAATTAATTTCTTATATAATTGTAAAAGAGATAATTTTAATTTGGTTTTTCAAA
ATCGTGTGAAGATTTGGTTCTTCAAAATCGATATAAGCTATATCCAAGGATATCCCCATCTTATC
CCATCCCGGTTCAATATTTTTAGTGCTCAGTTCATTTTTTTATCCAGTTCAGTTTTTTGCATGTT
TTGCCTTGCCCCCGCCATGATCAAATAATTATATATGGATTTAGGGATTCTGGGTTAGGGATTAT
GGTTTAAGGGTTGGGATTTAAGGTTTAAGGGTTAAGAGTTAAGGGTTAAGAGTTAGGGATTTAGG
GTTTAGGATTTAGGGATTTAAGGGTCAGGTTAGGGTTTAGGGTTTAGATTAATTAGTTTTTTAAA
TTTATATATTAAATATGTTCTTATATAATTGTAAAAGAGATAATAATAAATTTAATATATTAAAA
TTATGAGTATAGTTTATATTATTTAAGAGATATATAATAGATAGACTTTATGT
Found at i:33902421 original size:21 final size:22
Alignment explanation
Indices: 33902396--33902497 Score: 104
Period size: 21 Copynumber: 4.8 Consensus size: 22
33902386 TAGGGATTCT
*
33902396 GGGTTAGGGA-TTATGGTTTAA
1 GGGTTAGGGATTTAAGGTTTAA
33902417 GGGTT-GGGATTTAAGGTTTAA
1 GGGTTAGGGATTTAAGGTTTAA
* * *
33902438 GGGTTA-AGAGTTAAGGGTTAA
1 GGGTTAGGGATTTAAGGTTTAA
* *
33902459 GAGTTAGGGATTTAGGGTTT-A
1 GGGTTAGGGATTTAAGGTTTAA
*
33902480 GGATTTAGGGATTTAAGG
1 GG-GTTAGGGATTTAAGG
33902498 GTCAGGTTAG
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
20 4 0.06
21 39 0.60
22 22 0.34
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.35
Consensus pattern (22 bp):
GGGTTAGGGATTTAAGGTTTAA
Found at i:33902475 original size:8 final size:8
Alignment explanation
Indices: 33902462--33902494 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
33902452 GGGTTAAGAG
33902462 TTAGGGAT
1 TTAGGGAT
33902470 TTAGGG-T
1 TTAGGGAT
33902477 TTA-GGAT
1 TTAGGGAT
33902484 TTAGGGAT
1 TTAGGGAT
33902492 TTA
1 TTA
33902495 AGGGTCAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 2 0.09
7 8 0.35
8 13 0.57
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.42
Consensus pattern (8 bp):
TTAGGGAT
Found at i:33902479 original size:7 final size:7
Alignment explanation
Indices: 33902399--33902521 Score: 60
Period size: 7 Copynumber: 17.6 Consensus size: 7
33902389 GGATTCTGGG
*
33902399 TTAGGGA
1 TTAGGGT
*
33902406 TTATGGT
1 TTAGGGT
33902413 TTAAGGG-
1 TT-AGGGT
33902420 TT-GGGAT
1 TTAGGG-T
*
33902427 TTAAGGT
1 TTAGGGT
33902434 TTAAGGGT
1 TT-AGGGT
* *
33902442 TAAGAGT
1 TTAGGGT
*
33902449 TAAGGGT
1 TTAGGGT
* *
33902456 TAAGAG-
1 TTAGGGT
33902462 TTAGGGAT
1 TTAGGG-T
33902470 TTAGGGT
1 TTAGGGT
*
33902477 TTAGGAT
1 TTAGGGT
33902484 TTAGGGAT
1 TTAGGG-T
33902492 TTAAGGG-
1 TT-AGGGT
*
33902499 TCA-GG-
1 TTAGGGT
33902504 TTAGGGT
1 TTAGGGT
33902511 TTAGGGT
1 TTAGGGT
33902518 TTAG
1 TTAG
33902522 ATTAATTAGT
Statistics
Matches: 90, Mismatches: 15, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
5 7 0.08
6 7 0.08
7 53 0.59
8 19 0.21
9 4 0.04
ACGTcount: A:0.25, C:0.01, G:0.37, T:0.37
Consensus pattern (7 bp):
TTAGGGT
Found at i:33906578 original size:27 final size:26
Alignment explanation
Indices: 33906548--33906604 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
33906538 AATTTCGAGG
*
33906548 TTTACAATTTT-TAATTTTTATTAATT
1 TTTAC-ATTTTCTAACTTTTATTAATT
* *
33906574 ATTTACGTTTTCTCACTTTTATTAATT
1 -TTTACATTTTCTAACTTTTATTAATT
33906601 TTTA
1 TTTA
33906605 TTATTATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.63
Consensus pattern (26 bp):
TTTACATTTTCTAACTTTTATTAATT
Found at i:33906902 original size:39 final size:40
Alignment explanation
Indices: 33906844--33906922 Score: 124
Period size: 39 Copynumber: 2.0 Consensus size: 40
33906834 TATAGTGGCG
33906844 TTTGTGATAAAAAGCGCCGCTAAAGGTCATGATCTTTAGC
1 TTTGTGATAAAAAGCGCCGCTAAAGGTCATGATCTTTAGC
* * *
33906884 TTTGTGA-CAAAAGCGCCGCTAAAGGTCGTGGTCTTTAGC
1 TTTGTGATAAAAAGCGCCGCTAAAGGTCATGATCTTTAGC
33906923 GGCGTTTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 29 0.81
40 7 0.19
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (40 bp):
TTTGTGATAAAAAGCGCCGCTAAAGGTCATGATCTTTAGC
Found at i:33908698 original size:31 final size:31
Alignment explanation
Indices: 33908655--33908714 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
33908645 CTAAATGCTC
*
33908655 AGACGTATGACAGGTACGTGACCATTGTCTT
1 AGACGTACGACAGGTACGTGACCATTGTCTT
33908686 AGACGTACGACAGGTACGTGACCATTGTC
1 AGACGTACGACAGGTACGTGACCATTGTC
33908715 CCTTCATACC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (31 bp):
AGACGTACGACAGGTACGTGACCATTGTCTT
Found at i:33909576 original size:11 final size:11
Alignment explanation
Indices: 33909560--33909591 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
33909550 CACTTGAATC
33909560 AAAATAATAAT
1 AAAATAATAAT
*
33909571 AAAATATTAAT
1 AAAATAATAAT
33909582 AAAATAATAA
1 AAAATAATAA
33909592 GCATTCTCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAATAATAAT
Found at i:33913663 original size:13 final size:13
Alignment explanation
Indices: 33913645--33913671 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
33913635 CTTACGTTTG
33913645 AAGGTTTAGTTAC
1 AAGGTTTAGTTAC
33913658 AAGGTTTAGTTAC
1 AAGGTTTAGTTAC
33913671 A
1 A
33913672 GTTAACATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (13 bp):
AAGGTTTAGTTAC
Found at i:33914386 original size:33 final size:33
Alignment explanation
Indices: 33914344--33914413 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
33914334 CGTCTCGGTT
* *
33914344 GGTGGAGATATGACTTGCAAGGCTCACAAGAGA
1 GGTGGAGATATGACCTGCAAGGCTCACAAGAAA
*
33914377 GGTGGAGATATGACCTGCAAGGCTCATAAGAAA
1 GGTGGAGATATGACCTGCAAGGCTCACAAGAAA
33914410 GGTG
1 GGTG
33914414 TCAATACAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.33, C:0.14, G:0.34, T:0.19
Consensus pattern (33 bp):
GGTGGAGATATGACCTGCAAGGCTCACAAGAAA
Found at i:33915419 original size:18 final size:20
Alignment explanation
Indices: 33915396--33915432 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33915386 TTTTTAAAAA
33915396 TATAAAT-TT-TGAATTTTC
1 TATAAATATTGTGAATTTTC
33915414 TATAAATATTGTGAATTTT
1 TATAAATATTGTGAATTTT
33915433 GAAAAGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 2 0.12
20 8 0.47
ACGTcount: A:0.35, C:0.03, G:0.08, T:0.54
Consensus pattern (20 bp):
TATAAATATTGTGAATTTTC
Found at i:33915420 original size:24 final size:25
Alignment explanation
Indices: 33915374--33915422 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
33915364 AATTTTTTAA
*
33915374 AAATTTTGTAATTTTTTAAAAATAT
1 AAATTTTGTAATTTTCTAAAAATAT
*
33915399 AAATTTTG-AATTTTCTATAAATAT
1 AAATTTTGTAATTTTCTAAAAATAT
33915423 TGTGAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (25 bp):
AAATTTTGTAATTTTCTAAAAATAT
Done.