Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 122 of 150
Found at i:37383081 original size:35 final size:35
Alignment explanation
Indices: 37383013--37383089 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 35
37383003 ATTTAATTTA
*
37383013 ATTTAATTTTATCAAAATTAATTTTCCCAAAAATC
1 ATTTAATTTTATCAAAATTAATTTTCCAAAAAATC
* * *
37383048 ATTTAGTTTT-TCCAAATTAATTTTTCAAGAAAATTC
1 ATTTAATTTTATCAAAATTAATTTTCCAA-AAAA-TC
37383084 -TTTAAT
1 ATTTAAT
37383090 CAAATTCGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
34 15 0.43
35 18 0.51
36 2 0.06
ACGTcount: A:0.39, C:0.12, G:0.03, T:0.47
Consensus pattern (35 bp):
ATTTAATTTTATCAAAATTAATTTTCCAAAAAATC
Found at i:37384564 original size:12 final size:12
Alignment explanation
Indices: 37384547--37384571 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37384537 AATCTTGGGT
37384547 ACATTTTCAAGC
1 ACATTTTCAAGC
37384559 ACATTTTCAAGC
1 ACATTTTCAAGC
37384571 A
1 A
37384572 TAGGTGCCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (12 bp):
ACATTTTCAAGC
Found at i:37390562 original size:14 final size:14
Alignment explanation
Indices: 37390543--37390569 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37390533 ATATTTTTTT
37390543 TCCATAAATTGAAA
1 TCCATAAATTGAAA
37390557 TCCATAAATTGAA
1 TCCATAAATTGAA
37390570 CCATCCATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (14 bp):
TCCATAAATTGAAA
Found at i:37391204 original size:24 final size:24
Alignment explanation
Indices: 37391159--37391204 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
37391149 TAACAGTTTT
* *
37391159 AGAAGGAGCTGGTGAAGTAGGATC
1 AGAAGGAGCTAGTGAAGCAGGATC
*
37391183 AGAAGGAGCTAGTGGAGCAGGA
1 AGAAGGAGCTAGTGAAGCAGGA
37391205 GTTGCTGCAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.09, G:0.43, T:0.13
Consensus pattern (24 bp):
AGAAGGAGCTAGTGAAGCAGGATC
Found at i:37395134 original size:56 final size:50
Alignment explanation
Indices: 37395049--37395339 Score: 332
Period size: 50 Copynumber: 5.7 Consensus size: 50
37395039 AAAGAGATCC
*
37395049 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGTTGAGATCATGAGAGGT-T
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAGA-C--GAGAGGTCT
37395104 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGTCT
1 -CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGTCT
*
37395155 CATGTAAGACCATGTCTGGGACATGACATTGGCACCGAGACGAGAGGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGTCT
* * * * *
37395205 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACAGAGATGAGAGGACC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGTCT
* * * * * * * ** *
37395255 CTTATAAGACCTTGTCTGGGACATGGCATGGGCACCAATATGAGAACATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAG-AGGTCT
* *
37395306 CATGTAATACCATGTCTGGGACATGGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
37395340 TGTTGTTATC
Statistics
Matches: 208, Mismatches: 25, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
50 136 0.65
51 32 0.15
52 1 0.00
53 4 0.02
55 1 0.00
56 34 0.16
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGTCT
Found at i:37402788 original size:50 final size:50
Alignment explanation
Indices: 37402729--37402924 Score: 230
Period size: 50 Copynumber: 3.9 Consensus size: 50
37402719 TATTGAGATC
*
37402729 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* * * *
37402779 ACGAAAGGTCCCATGTAAGACAATGTCTGGAACATGGCGTTCGCACCGAG
1 ATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* * * * * * *
37402829 ATGAGAGGTCCCCTGTAAGACCATGTATGGGACATGGCATGGGCACTGAT
1 ATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
** * * *
37402879 ATGAGAACATCCCATGTAAGACCATCTCTAGGACATGGCTTTGGCA
1 ATGA-AAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
37402925 TGTTGTTATC
Statistics
Matches: 120, Mismatches: 25, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
50 88 0.73
51 32 0.27
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (50 bp):
ATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
Found at i:37404366 original size:5 final size:5
Alignment explanation
Indices: 37404356--37404383 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
37404346 GATCGAATAT
37404356 AATCG AATCG AATCG AATCG AATCG AAT
1 AATCG AATCG AATCG AATCG AATCG AAT
37404384 AAAAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (5 bp):
AATCG
Found at i:37404367 original size:15 final size:15
Alignment explanation
Indices: 37404347--37404384 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
37404337 TGAGCATTCG
*
37404347 ATCGAATATAATCGA
1 ATCGAATAGAATCGA
*
37404362 ATCGAATCGAATCGA
1 ATCGAATAGAATCGA
37404377 ATCGAATA
1 ATCGAATA
37404385 AAAAATTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.24
Consensus pattern (15 bp):
ATCGAATAGAATCGA
Found at i:37405177 original size:30 final size:30
Alignment explanation
Indices: 37405138--37405196 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
37405128 GGAGGTGGGA
*
37405138 TGGGAAGGGAACAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAACAAAAATTTT-GGGGAAAAG
**
37405169 TGGG-AGGGAGTAAAAATTTTGGGGAAAA
1 TGGGAAGGGAACAAAAATTTTGGGGAAAA
37405197 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 8 0.32
30 13 0.52
31 4 0.16
ACGTcount: A:0.41, C:0.02, G:0.39, T:0.19
Consensus pattern (30 bp):
TGGGAAGGGAACAAAAATTTTGGGGAAAAG
Found at i:37405366 original size:21 final size:21
Alignment explanation
Indices: 37405332--37405372 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37405322 GGGGGAAAGT
*
37405332 GGGAAGGAGTAAAAGTTTTGA
1 GGGAAGGAGTAAAAGGTTTGA
37405353 GGGAA-GAGTAAAAAGGTTTG
1 GGGAAGGAGT-AAAAGGTTTG
37405373 GGAGTTTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.00, G:0.39, T:0.22
Consensus pattern (21 bp):
GGGAAGGAGTAAAAGGTTTGA
Found at i:37405424 original size:9 final size:9
Alignment explanation
Indices: 37405410--37405446 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
37405400 TATAGTTTGA
37405410 TATTCGAAT
1 TATTCGAAT
37405419 TATTCGAAT
1 TATTCGAAT
*
37405428 TATTCGAGT
1 TATTCGAAT
37405437 TATTCGAAT
1 TATTCGAAT
37405446 T
1 T
37405447 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:37405516 original size:9 final size:9
Alignment explanation
Indices: 37405500--37405530 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
37405490 TCGAGTTGAT
37405500 TCGAATAAC
1 TCGAATAAC
*
37405509 TTGAATAAC
1 TCGAATAAC
37405518 TCGAATAAC
1 TCGAATAAC
37405527 TCGA
1 TCGA
37405531 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:37405718 original size:4 final size:4
Alignment explanation
Indices: 37405704--37405786 Score: 121
Period size: 4 Copynumber: 20.2 Consensus size: 4
37405694 ACAGTGATAA
*
37405704 ACAT AACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ATAT
1 ACAT -ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
37405753 ACAT ACAT ACAT GCAT ACAT AATAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT -ACAT ACAT ACAT A
37405787 AACATTAATA
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
4 64 0.90
5 7 0.10
ACGTcount: A:0.51, C:0.22, G:0.01, T:0.27
Consensus pattern (4 bp):
ACAT
Found at i:37405891 original size:18 final size:19
Alignment explanation
Indices: 37405857--37405903 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
37405847 CATGACACAC
37405857 GTAATATACAAACATAACA
1 GTAATATACAAACATAACA
*
37405876 GTAATATA-ACACATAACA
1 GTAATATACAAACATAACA
37405894 --AATATACAAA
1 GTAATATACAAA
37405904 TATACATACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 6 0.24
17 2 0.08
18 9 0.36
19 8 0.32
ACGTcount: A:0.60, C:0.15, G:0.04, T:0.21
Consensus pattern (19 bp):
GTAATATACAAACATAACA
Found at i:37405907 original size:43 final size:43
Alignment explanation
Indices: 37405859--37405947 Score: 119
Period size: 43 Copynumber: 2.0 Consensus size: 43
37405849 TGACACACGT
37405859 AATATACAAACATAACAGTA-ATATAAC-ACATAACAAATATACA
1 AATATACAAACATAACA-TATATATAACAACAT-ACAAATATACA
* *
37405902 AATATACATACATAATATATATATAACATACATACAAATATACA
1 AATATACAAACATAACATATATATAACA-ACATACAAATATACA
37405946 AA
1 AA
37405948 CATAACATAC
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
42 2 0.05
43 22 0.54
44 13 0.32
45 4 0.10
ACGTcount: A:0.60, C:0.15, G:0.01, T:0.25
Consensus pattern (43 bp):
AATATACAAACATAACATATATATAACAACATACAAATATACA
Found at i:37405916 original size:25 final size:24
Alignment explanation
Indices: 37405878--37405961 Score: 79
Period size: 25 Copynumber: 3.6 Consensus size: 24
37405868 ACATAACAGT
*
37405878 AATATA-ACACATAACAAATATACA
1 AATATACATACAT-ACAAATATACA
*
37405902 AATATACATACAT---AATATATA
1 AATATACATACATACAAATATACA
*
37405923 TATA-ACATACATACAAATATACA
1 AATATACATACATACAAATATACA
*
37405946 AACATAACATACATAC
1 AATAT-ACATACATAC
37405962 TTAACAATAA
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
20 8 0.17
21 10 0.21
23 9 0.19
24 6 0.12
25 15 0.31
ACGTcount: A:0.58, C:0.17, G:0.00, T:0.25
Consensus pattern (24 bp):
AATATACATACATACAAATATACA
Found at i:37406501 original size:40 final size:39
Alignment explanation
Indices: 37406447--37406531 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
37406437 TTATCTGCGC
* *
37406447 TTTTTA-ATAAGCGCCGCAATATATCGATG-ATTAGCGGCG
1 TTTTTAGAGAAGCGCCGCAATAGAT-GA-GCATTAGCGGCG
*
37406486 TTTTTAGAGAAGCGCCGCTATAGATGAGCATTAGCGGCG
1 TTTTTAGAGAAGCGCCGCAATAGATGAGCATTAGCGGCG
*
37406525 CTTTTAG
1 TTTTTAG
37406532 GAAAAACGCC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
38 1 0.03
39 24 0.60
40 15 0.38
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (39 bp):
TTTTTAGAGAAGCGCCGCAATAGATGAGCATTAGCGGCG
Found at i:37406737 original size:7 final size:7
Alignment explanation
Indices: 37406687--37407069 Score: 87
Period size: 7 Copynumber: 53.9 Consensus size: 7
37406677 TACCGTTCGT
*
37406687 GGTTTAT
1 GGTTTAG
37406694 GGTTTAG
1 GGTTTAG
*
37406701 TGTTTAG
1 GGTTTAG
*
37406708 TGTTTAG
1 GGTTTAG
37406715 TGG-TTAG
1 -GGTTTAG
* **
37406722 AAGCATAG
1 -GGTTTAG
37406730 GGTTTAG
1 GGTTTAG
*
37406737 GGGTTATG
1 GGTTTA-G
*
37406745 GGCTTAG
1 GGTTTAG
*
37406752 GGTCTAG
1 GGTTTAG
**
37406759 GGGGTAG
1 GGTTTAG
*
37406766 TGGCTTAG
1 -GGTTTAG
*
37406774 GGTTTTG
1 GGTTTAG
*
37406781 GATTTAAG
1 GGTTT-AG
*
37406789 GGTTTATA
1 GGTTTA-G
*
37406797 GGTTAAG
1 GGTTTAG
37406804 GGTTTAG
1 GGTTTAG
37406811 TGGTTTAG
1 -GGTTTAG
*
37406819 TGGTTTAA
1 -GGTTTAG
*
37406827 GGTTATAT
1 GGTT-TAG
37406835 GGTTTAG
1 GGTTTAG
*
37406842 GGTTTAA
1 GGTTTAG
*
37406849 GGTTTAA
1 GGTTTAG
*
37406856 GGTTTAA
1 GGTTTAG
* *
37406863 AGTTTAA
1 GGTTTAG
*
37406870 AGTTTAG
1 GGTTTAG
37406877 GG-TTA-
1 GGTTTAG
*
37406882 -ATTTAG
1 GGTTTAG
*
37406888 GGTTTAC
1 GGTTTAG
*
37406895 AGTTTAG
1 GGTTTAG
*
37406902 GGTGTA-
1 GGTTTAG
*
37406908 TGTTTAG
1 GGTTTAG
* *
37406915 GGTATAA
1 GGTTTAG
* *
37406922 AGTTTAA
1 GGTTTAG
*
37406929 GGTTTAT
1 GGTTTAG
* *
37406936 GATTTAA
1 GGTTTAG
* *
37406943 TGTTAAG
1 GGTTTAG
*
37406950 AGTTTAG
1 GGTTTAG
* *
37406957 TGTTTAT
1 GGTTTAG
*
37406964 GGTGTA-
1 GGTTTAG
*
37406970 GGTTTAT
1 GGTTTAG
*
37406977 GGTCTAG
1 GGTTTAG
* *
37406984 TGTTTAT
1 GGTTTAG
**
37406991 TATTTAG
1 GGTTTAG
37406998 GGTTTAG
1 GGTTTAG
*
37407005 GAGGTTAG
1 G-GTTTAG
*
37407013 AGTTTAAG
1 GGTTT-AG
37407021 GG-TTACG
1 GGTTTA-G
* *
37407028 AGTTTAA
1 GGTTTAG
*
37407035 GGTTTAAA
1 GGTTT-AG
* *
37407043 GGCTAAG
1 GGTTTAG
* *
37407050 GGCTTAT
1 GGTTTAG
37407057 GGTTTAG
1 GGTTTAG
37407064 GGTTTA
1 GGTTTA
37407070 AATTTTATTT
Statistics
Matches: 273, Mismatches: 85, Indels: 36
0.69 0.22 0.09
Matches are distributed among these distances:
5 3 0.01
6 13 0.05
7 196 0.72
8 61 0.22
ACGTcount: A:0.23, C:0.02, G:0.33, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:37406752 original size:22 final size:22
Alignment explanation
Indices: 37406727--37406778 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
37406717 GTTAGAAGCA
*
37406727 TAGGGTTTAGGGGTTA-TGGGCT
1 TAGGGTTTAGGGGGTAGT-GGCT
*
37406749 TAGGGTCTAGGGGGTAGTGGCT
1 TAGGGTTTAGGGGGTAGTGGCT
37406771 TAGGGTTT
1 TAGGGTTT
37406779 TGGATTTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 25 0.96
23 1 0.04
ACGTcount: A:0.13, C:0.06, G:0.46, T:0.35
Consensus pattern (22 bp):
TAGGGTTTAGGGGGTAGTGGCT
Found at i:37406802 original size:15 final size:15
Alignment explanation
Indices: 37406784--37406831 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
37406774 GGTTTTGGAT
37406784 TTAAGGGTTTATAGG
1 TTAAGGGTTTATAGG
37406799 TTAAGGGTTTAGT-GG
1 TTAAGGGTTTA-TAGG
*
37406814 TTTAGTGGTTTA-AGG
1 TTAAG-GGTTTATAGG
37406829 TTA
1 TTA
37406832 TATGGTTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 21 0.75
16 7 0.25
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (15 bp):
TTAAGGGTTTATAGG
Found at i:37406854 original size:14 final size:14
Alignment explanation
Indices: 37406787--37407040 Score: 110
Period size: 14 Copynumber: 18.1 Consensus size: 14
37406777 TTTGGATTTA
*
37406787 AGGGTTTATAGGTTA
1 AGGGTTTA-AGGTTT
*
37406802 AGGGTTTAGTGGTTT
1 AGGGTTTA-AGGTTT
37406817 AGTGGTTTAAGGTTAT
1 AG-GGTTTAAGGTT-T
* *
37406833 ATGGTTTAGGGTTT
1 AGGGTTTAAGGTTT
*
37406847 AAGGTTTAAGGTTT
1 AGGGTTTAAGGTTT
** *
37406861 AAAGTTTAAAGTTT
1 AGGGTTTAAGGTTT
37406875 AGGG-TTAA--TTT
1 AGGGTTTAAGGTTT
37406886 AGGGTTTACA-GTTT
1 AGGGTTTA-AGGTTT
* *
37406900 AGGGTGT-ATGTTT
1 AGGGTTTAAGGTTT
* *
37406913 AGGGTATAAAGTTT
1 AGGGTTTAAGGTTT
* * *
37406927 AAGGTTTATGATTT
1 AGGGTTTAAGGTTT
**
37406941 AATG-TTAAGAGTTT
1 AGGGTTTAAG-GTTT
* * *
37406955 AGTGTTTATGGTGT
1 AGGGTTTAAGGTTT
* *
37406969 A-GGTTTATGGTCT
1 AGGGTTTAAGGTTT
* ***
37406982 AGTGTTTATTATTT
1 AGGGTTTAAGGTTT
37406996 AGGGTTTAGGAGG-TT
1 AGGGTTTA--AGGTTT
* *
37407011 AGAGTTTAAGGGTT
1 AGGGTTTAAGGTTT
*
37407025 ACGAGTTTAAGGTTT
1 A-GGGTTTAAGGTTT
37407040 A
1 A
37407041 AAGGCTAAGG
Statistics
Matches: 187, Mismatches: 38, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
11 7 0.04
12 4 0.02
13 33 0.18
14 81 0.43
15 54 0.29
16 8 0.04
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (14 bp):
AGGGTTTAAGGTTT
Found at i:37406925 original size:27 final size:26
Alignment explanation
Indices: 37406867--37406941 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
37406857 GTTTAAAGTT
* *
37406867 TAAAGTTTAGGGTTA-ATTTAGGGTT
1 TAAAGTTTAGGGTTATGTTTAGGGTA
*
37406892 TACAGTTTAGGGTGTATGTTTAGGGTA
1 TAAAGTTTAGGGT-TATGTTTAGGGTA
*
37406919 TAAAGTTTAAGGTTTATGATTTA
1 TAAAGTTT-AGGGTTATG-TTTA
37406942 ATGTTAAGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
25 12 0.29
26 2 0.05
27 19 0.46
28 8 0.20
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.44
Consensus pattern (26 bp):
TAAAGTTTAGGGTTATGTTTAGGGTA
Found at i:37406976 original size:13 final size:14
Alignment explanation
Indices: 37406954--37406990 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
37406944 GTTAAGAGTT
*
37406954 TAGTGTTTATGGTG
1 TAGTGTTTATGGTC
37406968 TAG-GTTTATGGTC
1 TAGTGTTTATGGTC
37406981 TAGTGTTTAT
1 TAGTGTTTAT
37406991 TATTTAGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.16, C:0.03, G:0.30, T:0.51
Consensus pattern (14 bp):
TAGTGTTTATGGTC
Found at i:37407017 original size:15 final size:14
Alignment explanation
Indices: 37407007--37407036 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
37406997 GGGTTTAGGA
37407007 GGTTAGAGTTTAAG
1 GGTTAGAGTTTAAG
37407021 GGTTACGAGTTTAAG
1 GGTTA-GAGTTTAAG
37407036 G
1 G
37407037 TTTAAAGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.27, C:0.03, G:0.37, T:0.33
Consensus pattern (14 bp):
GGTTAGAGTTTAAG
Found at i:37407392 original size:116 final size:116
Alignment explanation
Indices: 37407244--37407654 Score: 513
Period size: 115 Copynumber: 3.6 Consensus size: 116
37407234 AGCATAATGG
* * * *
37407244 TGTCG-TTTTATCTGCGTTTTTAGTGGCGTTTTTGCTAAAACGCCGCAAAAGGATGTGTATTAGT
1 TGTCGTTTTTATCTACGTTTTTAGTGGCGTTTTTACTAAAACGCCGCAAAAGGATATGTGTTAGT
* *
37407308 GGCGTTTTTACAAAAAATGCCGCAATTATGTTTTTAGTATTTGGTAAACGT
66 GGCGTTTTTACAAAAAACGCCGCAATTATGTTATTAGTATTTGGTAAACGT
* **
37407359 TGTCGTTTTTATCTACGTTTTTAGTGGCGTTTTTACCAAAATACCGCAAAAGGATATGTGTTAGT
1 TGTCGTTTTTATCTACGTTTTTAGTGGCGTTTTTACTAAAACGCCGCAAAAGGATATGTGTTAGT
** * * *
37407424 GGCGTTTTTA-GGAAAACGCTGCAATTGTATTATTAGTATTTGGTAAACGT
66 GGCGTTTTTACAAAAAACGCCGCAATTATGTTATTAGTATTTGGTAAACGT
* * * * * *
37407474 TGTCGTTTTTATCTACATTATTAGTGGC-TTTTTACTAAAACGCAGCGAAAGGTTATGTGGTAGT
1 TGTCGTTTTTATCTACGTTTTTAGTGGCGTTTTTACTAAAACGCCGCAAAAGGATATGTGTTAGT
* * * * * * *
37407538 GGCGCTTTTACAAAAAACGTCGCAATTATGTTATAATTGTTCGCTAAACGT
66 GGCGTTTTTACAAAAAACGCCGCAATTATGTTATTAGTATTTGGTAAACGT
* * ** *
37407589 TGTCGTTTTTATCTACGTTTTTAGTGGTGTTTGTACTAAAACGCCGGTAAAGGATATGTTTTAGT
1 TGTCGTTTTTATCTACGTTTTTAGTGGCGTTTTTACTAAAACGCCGCAAAAGGATATGTGTTAGT
37407654 G
66 G
37407655 TCGTAATTAT
Statistics
Matches: 248, Mismatches: 45, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
114 38 0.15
115 118 0.48
116 92 0.37
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (116 bp):
TGTCGTTTTTATCTACGTTTTTAGTGGCGTTTTTACTAAAACGCCGCAAAAGGATATGTGTTAGT
GGCGTTTTTACAAAAAACGCCGCAATTATGTTATTAGTATTTGGTAAACGT
Found at i:37407844 original size:23 final size:22
Alignment explanation
Indices: 37407816--37407883 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 22
37407806 TCCCACTCTG
*
37407816 ATTTCCCCAATTTCATTTCCCTA
1 ATTTCCCC-ATTTCATTTCCCCA
*
37407839 ATTT-CCCATTTCCTATTCCCCCA
1 ATTTCCCCATTT-C-ATTTCCCCA
*
37407862 ACTTCCCCGATTTCATTTCCCC
1 ATTTCCCC-ATTTCATTTCCCC
37407884 CCAATTCCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
21 4 0.11
22 4 0.11
23 21 0.57
24 4 0.11
25 4 0.11
ACGTcount: A:0.18, C:0.41, G:0.01, T:0.40
Consensus pattern (22 bp):
ATTTCCCCATTTCATTTCCCCA
Found at i:37411041 original size:21 final size:21
Alignment explanation
Indices: 37411017--37411100 Score: 89
Period size: 21 Copynumber: 4.0 Consensus size: 21
37411007 TAAAGCAAAT
** *
37411017 GCAGCAGCGAGGGAAGTAGAG
1 GCAGCAGCGAGACAAGCAGAG
37411038 GCAGCAGCGAGACAAGCAGAG
1 GCAGCAGCGAGACAAGCAGAG
* *
37411059 GCTGCAGCAAGACAAGCAGAG
1 GCAGCAGCGAGACAAGCAGAG
**
37411080 GCTA-CAGCGAGGGAAGCAGAG
1 GC-AGCAGCGAGACAAGCAGAG
37411101 CAGAGCAAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.36, C:0.20, G:0.40, T:0.04
Consensus pattern (21 bp):
GCAGCAGCGAGACAAGCAGAG
Found at i:37411550 original size:84 final size:85
Alignment explanation
Indices: 37411440--37411599 Score: 227
Period size: 84 Copynumber: 1.9 Consensus size: 85
37411430 TTTGTGGGAG
* * *
37411440 AAGCGCCGCTAAAAGTCATGATCTATAG-CGACGTTTGTGGG-GTAAGCGTCGCTAAAAGTCATG
1 AAGCGCCGCTAAAAATCATGACCTATAGCCG-CGTTTGTGGGAG-AAGCGCCGCTAAAAGTCATG
*
37411503 ATCTATAGCGGCGCTTTTATAC
64 ACCTATAGCGGCGCTTTTATAC
* *
37411525 AAGCGCC-CTAAAAATCATGACCTATAGCCGTGTTTGTGGGAGAAGCGCCGCTAAAGGTCATGAC
1 AAGCGCCGCTAAAAATCATGACCTATAGCCGCGTTTGTGGGAGAAGCGCCGCTAAAAGTCATGAC
37411589 CTATAGCGGCG
66 CTATAGCGGCG
37411600 TTTGTCGGAG
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
84 57 0.85
85 10 0.15
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (85 bp):
AAGCGCCGCTAAAAATCATGACCTATAGCCGCGTTTGTGGGAGAAGCGCCGCTAAAAGTCATGAC
CTATAGCGGCGCTTTTATAC
Found at i:37411625 original size:43 final size:42
Alignment explanation
Indices: 37411429--37411614 Score: 205
Period size: 43 Copynumber: 4.4 Consensus size: 42
37411419 TAGCGGCGAT
* *
37411429 GTTTGTGGGAGAAGCGCCGCTAAAAGTCATGATCTATAGCGAC
1 GTTTGT-GGAGAAGCGCCGCTAAAAGTCATGACCTATAGCGGC
* * *
37411472 GTTTGTGGGGTAAGCGTCGCTAAAAGTCATGATCTATAGCGGC
1 GTTTGTGGAG-AAGCGCCGCTAAAAGTCATGACCTATAGCGGC
** * * * *
37411515 GCTTT-TATACAAGCGCC-CTAAAAATCATGACCTATAGCCGT
1 G-TTTGTGGAGAAGCGCCGCTAAAAGTCATGACCTATAGCGGC
*
37411556 GTTTGTGGGAGAAGCGCCGCTAAAGGTCATGACCTATAGCGGC
1 GTTTGT-GGAGAAGCGCCGCTAAAAGTCATGACCTATAGCGGC
37411599 GTTTGTCGGAGAAGCG
1 GTTTGT-GGAGAAGCG
37411615 TCACTAAAGG
Statistics
Matches: 118, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
40 3 0.03
41 22 0.19
42 17 0.14
43 73 0.62
44 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (42 bp):
GTTTGTGGAGAAGCGCCGCTAAAAGTCATGACCTATAGCGGC
Found at i:37411639 original size:43 final size:43
Alignment explanation
Indices: 37411429--37411645 Score: 172
Period size: 43 Copynumber: 5.1 Consensus size: 43
37411419 TAGCGGCGAT
* * * * *
37411429 GTTTGTGGGAGAAGCGCCGCTAAAAGTCATGATCTATAGCGAC
1 GTTTGTCGGAGAAGCGCCACTAAAGGTCATGACCTATAGCGGC
* * * * *
37411472 GTTTGT-GGGGTAAGCGTCGCTAAAAGTCATGATCTATAGCGGC
1 GTTTGTCGGAG-AAGCGCCACTAAAGGTCATGACCTATAGCGGC
** * ** * *
37411515 GCTTT-T-ATACAAGCGCC-CTAAAAATCATGACCTATAGCCGT
1 G-TTTGTCGGAGAAGCGCCACTAAAGGTCATGACCTATAGCGGC
* *
37411556 GTTTGTGGGAGAAGCGCCGCTAAAGGTCATGACCTATAGCGGC
1 GTTTGTCGGAGAAGCGCCACTAAAGGTCATGACCTATAGCGGC
* * * * *
37411599 GTTTGTCGGAGAAGCGTCACTAAAGGTTATTACTTTTAGCGGC
1 GTTTGTCGGAGAAGCGCCACTAAAGGTCATGACCTATAGCGGC
37411642 GTTT
1 GTTT
37411646 ATTTCTAAAA
Statistics
Matches: 143, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
40 3 0.02
41 22 0.15
42 17 0.12
43 98 0.69
44 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (43 bp):
GTTTGTCGGAGAAGCGCCACTAAAGGTCATGACCTATAGCGGC
Found at i:37411811 original size:5 final size:5
Alignment explanation
Indices: 37411780--37412063 Score: 132
Period size: 5 Copynumber: 58.6 Consensus size: 5
37411770 GTGTAGTGAT
*
37411780 ACAT- ACATA ACAGT- ACATA ACAT- ACATA ACATA ACAATAA ACGTA
1 ACATA ACATA ACA-TA ACATA ACATA ACATA ACATA AC-AT-A ACATA
37411825 ACAT- ACAT- ACATA ACAGT- ACATA ACAT- ACATA ACAT- ACAATAA
1 ACATA ACATA ACATA ACA-TA ACATA ACATA ACATA ACATA AC-AT-A
* * *
37411868 ACGTA ACAT- GCA-A ACAAA ACAGT- ACATA ACAT- ACATA ACATA ACAATAA
1 ACATA ACATA ACATA ACATA ACA-TA ACATA ACATA ACATA ACATA AC-AT-A
* * *
37411917 ACGTA ACAT- ACA-A ACATA ACAGT- TCATA ACAT- ACATA ACATA ATAGTAA
1 ACATA ACATA ACATA ACATA ACA-TA ACATA ACATA ACATA ACATA ACA-T-A
* *
37411966 ACGTA ACAT- ACAT- GCATA ACAGT- ACATA ACAT- ACATA ACATA ACAGTA
1 ACATA ACATA ACATA ACATA ACA-TA ACATA ACATA ACATA ACATA ACA-TA
* * * *
37412014 AAAGTA ACAT- ACGT- ACATA ATAGT- ACATA ACAT- ACATT ACAT- ACATA
1 ACA-TA ACATA ACATA ACATA ACA-TA ACATA ACATA ACATA ACATA ACATA
37412061 ACA
1 ACA
37412064 GTTTAAAAAC
Statistics
Matches: 220, Mismatches: 23, Indels: 73
0.70 0.07 0.23
Matches are distributed among these distances:
4 71 0.32
5 116 0.53
6 23 0.10
7 10 0.05
ACGTcount: A:0.54, C:0.20, G:0.06, T:0.21
Consensus pattern (5 bp):
ACATA
Found at i:37411848 original size:49 final size:49
Alignment explanation
Indices: 37411778--37412056 Score: 434
Period size: 49 Copynumber: 5.7 Consensus size: 49
37411768 TGGTGTAGTG
37411778 ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
1 ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
37411827 ATACATACATAACAGTACATAACATACATAACAT-ACAATAAACGTAAC
1 ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
* * *
37411875 ATGCAAACAAAACAGTACATAACATACATAACATAACAATAAACGTAAC
1 ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
* * * *
37411924 ATACAAACATAACAGTTCATAACATACATAACATAATAGTAAACGTAAC
1 ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
* * *
37411973 ATACATGCATAACAGTACATAACATACATAACATAACAGTAAAAGTAAC
1 ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
* * *
37412022 ATACGTACATAATAGTACATAACATACATTACATA
1 ATACATACATAACAGTACATAACATACATAACATA
37412057 CATAACAGTT
Statistics
Matches: 212, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
48 45 0.21
49 167 0.79
ACGTcount: A:0.54, C:0.19, G:0.06, T:0.21
Consensus pattern (49 bp):
ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAAC
Found at i:37411984 original size:146 final size:147
Alignment explanation
Indices: 37411778--37412056 Score: 434
Period size: 146 Copynumber: 1.9 Consensus size: 147
37411768 TGGTGTAGTG
*
37411778 ATACATACATAACAGTACATAACATACATAACATAACAATAAACGTAACATACATACATAACAGT
1 ATACAAACATAACAGTACATAACATACATAACATAACAATAAACGTAACATACATACATAACAGT
* *
37411843 ACATAACATACATAACAT-ACAATAAACGTAACATGCAAACAAAACAGTACATAACATACATAAC
66 ACATAACATACATAACATAACAATAAAAGTAACATACAAACAAAACAGTACATAACATACATAAC
37411907 ATAACAATAAACGTAAC
131 ATAACAATAAACGTAAC
* * * *
37411924 ATACAAACATAACAGTTCATAACATACATAACATAATAGTAAACGTAACATACATGCATAACAGT
1 ATACAAACATAACAGTACATAACATACATAACATAACAATAAACGTAACATACATACATAACAGT
* ** * * *
37411989 ACATAACATACATAACATAACAGTAAAAGTAACATACGTACATAATAGTACATAACATACATTAC
66 ACATAACATACATAACATAACAATAAAAGTAACATACAAACAAAACAGTACATAACATACATAAC
37412054 ATA
131 ATA
37412057 CATAACAGTT
Statistics
Matches: 119, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
146 78 0.66
147 41 0.34
ACGTcount: A:0.54, C:0.19, G:0.06, T:0.21
Consensus pattern (147 bp):
ATACAAACATAACAGTACATAACATACATAACATAACAATAAACGTAACATACATACATAACAGT
ACATAACATACATAACATAACAATAAAAGTAACATACAAACAAAACAGTACATAACATACATAAC
ATAACAATAAACGTAAC
Found at i:37412083 original size:29 final size:32
Alignment explanation
Indices: 37412042--37412120 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 32
37412032 AATAGTACAT
37412042 AACATA-CATTACATACAT-AACAGT-TTAAA-
1 AACATAGCA-TACATACATAAACAGTATTAAAC
37412071 AACATAGCATACATACATAAACAGTAATTAAAC
1 AACATAGCATACATACATAAACAGT-ATTAAAC
*
37412104 ATACATAGCAAACATAC
1 A-ACATAGCATACATAC
37412121 CTTTCACCCT
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
29 15 0.35
30 8 0.19
32 5 0.12
33 1 0.02
34 14 0.33
ACGTcount: A:0.53, C:0.19, G:0.05, T:0.23
Consensus pattern (32 bp):
AACATAGCATACATACATAAACAGTATTAAAC
Found at i:37414393 original size:20 final size:22
Alignment explanation
Indices: 37414349--37414394 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
37414339 ATCTTTTTGT
37414349 TTAAAAATTGATTCAATTCTATTA
1 TTAAAAATTGATTCAA-T-TATTA
37414373 TTAAAAATTGATTCATATTATT
1 TTAAAAATTGATTCA-ATTATT
37414395 GACATAAGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.19
24 16 0.76
25 1 0.05
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (22 bp):
TTAAAAATTGATTCAATTATTA
Found at i:37415331 original size:18 final size:18
Alignment explanation
Indices: 37415308--37415348 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
37415298 TTCTTTTTAT
*
37415308 AAAATTTAA-AAAATTAA
1 AAAATTTAACAAAAATAA
37415325 CAAAA-TTAACAAAAATAA
1 -AAAATTTAACAAAAATAA
37415343 AAAATT
1 AAAATT
37415349 ATAGAAAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAATTTAACAAAAATAA
Found at i:37436694 original size:34 final size:34
Alignment explanation
Indices: 37436651--37436715 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
37436641 TGATAGAATA
37436651 TTGGAAGGTTGTTTTGACTAAAAGCATAAATAAT
1 TTGGAAGGTTGTTTTGACTAAAAGCATAAATAAT
* *
37436685 TTGGAAGGTTTTTTTGAGTAAAAGCATAAAT
1 TTGGAAGGTTGTTTTGACTAAAAGCATAAAT
37436716 CTGAATGTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.37, C:0.05, G:0.22, T:0.37
Consensus pattern (34 bp):
TTGGAAGGTTGTTTTGACTAAAAGCATAAATAAT
Found at i:37438759 original size:25 final size:24
Alignment explanation
Indices: 37438731--37438778 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
37438721 TTAACTCTCA
*
37438731 TGAGCTT-TCTGTTATATGGCTCTTG
1 TGAGCTTCT-TGTTA-ATAGCTCTTG
37438756 TGAGCTTCTTGTTAATAGCTCTT
1 TGAGCTTCTTGTTAATAGCTCTT
37438779 CGGAGAATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 12 0.57
26 1 0.05
ACGTcount: A:0.15, C:0.17, G:0.21, T:0.48
Consensus pattern (24 bp):
TGAGCTTCTTGTTAATAGCTCTTG
Found at i:37438764 original size:24 final size:25
Alignment explanation
Indices: 37438731--37438778 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
37438721 TTAACTCTCA
*
37438731 TGAGCTTTC-TGTTATATGGCTCTTG
1 TGAGCTTTCTTGTTA-ATAGCTCTTG
37438756 TGAGC-TTCTTGTTAATAGCTCTT
1 TGAGCTTTCTTGTTAATAGCTCTT
37438779 CGGAGAATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.15, C:0.17, G:0.21, T:0.48
Consensus pattern (25 bp):
TGAGCTTTCTTGTTAATAGCTCTTG
Found at i:37438982 original size:25 final size:24
Alignment explanation
Indices: 37438954--37439031 Score: 75
Period size: 25 Copynumber: 3.1 Consensus size: 24
37438944 TTCCCGATAT
37438954 TGGCTCGTATGAGCTTACCGTTACA
1 TGGCTCGTATGAGCTT-CCGTTACA
* * *
37438979 TGGCTCATATGAGCTTCCTATTATA
1 TGGCTCGTATGAGCTTCC-GTTACA
* *
37439004 TGGCTCGAAAGAGCTTCCCGTTTACA
1 TGGCTCGTATGAGCTT-CCG-TTACA
37439030 TG
1 TG
37439032 TTTGCATAAG
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
24 2 0.05
25 32 0.76
26 8 0.19
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (24 bp):
TGGCTCGTATGAGCTTCCGTTACA
Found at i:37439519 original size:41 final size:41
Alignment explanation
Indices: 37439439--37439519 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
37439429 GCTTACTCTG
* *
37439439 TTTTATTTTCCTATTTTATAGTAATTCAAAAGTTTGATTTT
1 TTTTATTTTCCTATTTTATAGTAATTCAAAAGCTCGATTTT
37439480 TTTTATTTTCCTATTTTATAGTAATTCAAAAGCTCGATTT
1 TTTTATTTTCCTATTTTATAGTAATTCAAAAGCTCGATTT
37439520 GGTTGGAAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.27, C:0.10, G:0.07, T:0.56
Consensus pattern (41 bp):
TTTTATTTTCCTATTTTATAGTAATTCAAAAGCTCGATTTT
Found at i:37452313 original size:229 final size:230
Alignment explanation
Indices: 37451901--37452362 Score: 764
Period size: 229 Copynumber: 2.0 Consensus size: 230
37451891 GCCTGCCTCG
* ** *
37451901 TAGTCAAGTATGATAAAATCAGCTGAAAAAATGAATGTATCCATACGAACTAAAATATCTTTCAT
1 TAGTCAAGTATGATAAAATCAGCCGAAAAAACAAATGTATCCACACGAACTAAAATATCTTTCAT
37451966 TTACCCTTCAAGTTGAGCTAAAGATCAATCTGCAAGTTGCAATGTCACTGTAATGAGTTTCATAT
66 TTACCCTTCAAGTTGAGCTAAAGATCAATCTGCAAGTTGCAATGTCACTGTAATGAGTTTCATAT
* * * *
37452031 GACCAATTCCCAACTTTCTAAAAGTAGATAGTGGCATGAGACTGATTCTAGCTCCC-AATTGCAT
131 AACCAATTCCCAACTTTCTAAAAGTAGATAATGGCATGAGACTGATGCTAGCTCCCAAATCGCAT
*
37452095 AAAGCTTTTCCCAAATAATGATTTCCAATCGAACA
196 AAAGCTTTGCCCAAATAATGATTTCCAATCGAACA
* *
37452130 TAGTCAAGTATGATAAAATCAGCCGGAAAAACAAATTTATCCACACGAACTAAAATATCTTTCAT
1 TAGTCAAGTATGATAAAATCAGCCGAAAAAACAAATGTATCCACACGAACTAAAATATCTTTCAT
* * * *
37452195 TTTCCCTTCAAGTTGAGCTAAAGATCGATCTGCAAGTTGTAATGTCACTGTAATGGGTTTCATAT
66 TTACCCTTCAAGTTGAGCTAAAGATCAATCTGCAAGTTGCAATGTCACTGTAATGAGTTTCATAT
*
37452260 AACCAATTCCCAACTTTCTAAAAGTAGATAATGGCATGAGATTGATGCTAGCTCCCAAATCGCAT
131 AACCAATTCCCAACTTTCTAAAAGTAGATAATGGCATGAGACTGATGCTAGCTCCCAAATCGCAT
*
37452325 AAAGCTTTGCCCAAATATTGATTTCCAATCGAACA
196 AAAGCTTTGCCCAAATAATGATTTCCAATCGAACA
37452360 TAG
1 TAG
37452363 AATGGTAAAG
Statistics
Matches: 215, Mismatches: 17, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
229 172 0.80
230 43 0.20
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (230 bp):
TAGTCAAGTATGATAAAATCAGCCGAAAAAACAAATGTATCCACACGAACTAAAATATCTTTCAT
TTACCCTTCAAGTTGAGCTAAAGATCAATCTGCAAGTTGCAATGTCACTGTAATGAGTTTCATAT
AACCAATTCCCAACTTTCTAAAAGTAGATAATGGCATGAGACTGATGCTAGCTCCCAAATCGCAT
AAAGCTTTGCCCAAATAATGATTTCCAATCGAACA
Found at i:37461068 original size:93 final size:92
Alignment explanation
Indices: 37460970--37461143 Score: 210
Period size: 93 Copynumber: 1.9 Consensus size: 92
37460960 GCAGTGGAGT
* * *
37460970 AAGATGAAGCTACAAATCTTATACCCCTGAAA-TTGTAGTCGGTTGGAATGA-AGCTACAAT-AA
1 AAGATGAAGCTACAAATCCTATA-CCCTGAAATTTATAATCGGTTGGAAT-ACAGCTACAATGAA
37461032 TGAATCTTATCTCCCTGAAATGCAGTAAAGC
64 --AATCTTATCTCCCTGAAATGCAGTAAAGC
* * * *
37461063 AAGATGAAGTTATAAATCCTATACCCTTAAATTTATAATGGGTTGGAATACAGCTACAATGGAAA
1 AAGATGAAGCTACAAATCCTATACCCTGAAATTTATAATCGGTTGGAATACAGCTACAAT-GAAA
*
37461128 ATCTTATCTCTCTGAA
65 ATCTTATCTCCCTGAA
37461144 TTTGTAGTAG
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
92 8 0.12
93 59 0.86
95 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (92 bp):
AAGATGAAGCTACAAATCCTATACCCTGAAATTTATAATCGGTTGGAATACAGCTACAATGAAAA
TCTTATCTCCCTGAAATGCAGTAAAGC
Found at i:37461294 original size:186 final size:186
Alignment explanation
Indices: 37461038--37461543 Score: 642
Period size: 186 Copynumber: 2.7 Consensus size: 186
37461028 ATAATGAATC
* * * * * *
37461038 TTATCTCCCTGAAA--TGCAGTAAAGCAAGATGAAGTTATAAATCCTATACCCTTAAATTTATAA
1 TTATCTCCCT-AAAGTTGCAATAGAGCAAGATGAAGCTACAAATCCTATACCCTTAAAGTTGTAA
* * * *
37461101 TGGGTTGGAATACAGCTACAATGGAAAATCTTATCTCTCTGAATTTGTAGT-AGGGCAAGATAAA
65 TGGGTTGGAATAAAGCTACAATGGAAAATCTTATCTCCCTAAAGTTGTAGTGA-GGCAAGATAAA
* * *
37461165 GTTACAACATTAAATATGGTTTTCTTAAAGTTGCAGTGAAATGGATAAAGTAGCAATA
129 GCTACAACATTAAATATGGTTTTCTTAAAGTTGCAGTGAAATAGATAAAGCAGCAATA
* * * * * * *
37461223 TTATCTCCTTAAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTAAAGCTGTAGT
1 TTATCTCCCTAAAGTTGCAATAGAGCAAGATGAAGCTACAAATCCTATACCCTTAAAGTTGTAAT
*
37461288 GGGTTGGAATAAAGCTACAATGGCAAATCTTATCTCCCTAAAGTTGTAGTGAGGCAAGATAAAGC
66 GGGTTGGAATAAAGCTACAATGGAAAATCTTATCTCCCTAAAGTTGTAGTGAGGCAAGATAAAGC
* * *
37461353 TACAACATTAAATCTGGTTTTCTTGAAGTTGCAGTGAAATAGATAAAGCAGCAATC
131 TACAACATTAAATATGGTTTTCTTAAAGTTGCAGTGAAATAGATAAAGCAGCAATA
* * *
37461409 TTATCTCCCTAAAGTTGCAATAGAGCAAGATGAAGCTACAAATACTATACCCTTAAAGTTGCATT
1 TTATCTCCCTAAAGTTGCAATAGAGCAAGATGAAGCTACAAATCCTATACCCTTAAAGTTGTAAT
* * * * ** * *
37461474 GGGTTGGAGTGAAGTTACAATAGCGAATCTTGTCTCCCTAAAGTTGCAGTG-GAGCAAGATAAAG
66 GGGTTGGAATAAAGCTACAATGGAAAATCTTATCTCCCTAAAGTTGTAGTGAG-GCAAGATAAAG
37461538 CTACAA
130 CTACAA
37461544 ATCCCGTATC
Statistics
Matches: 279, Mismatches: 38, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
184 3 0.01
185 10 0.04
186 265 0.95
187 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.29
Consensus pattern (186 bp):
TTATCTCCCTAAAGTTGCAATAGAGCAAGATGAAGCTACAAATCCTATACCCTTAAAGTTGTAAT
GGGTTGGAATAAAGCTACAATGGAAAATCTTATCTCCCTAAAGTTGTAGTGAGGCAAGATAAAGC
TACAACATTAAATATGGTTTTCTTAAAGTTGCAGTGAAATAGATAAAGCAGCAATA
Found at i:37461335 original size:94 final size:93
Alignment explanation
Indices: 37460722--37461547 Score: 355
Period size: 94 Copynumber: 8.9 Consensus size: 93
37460712 CTCTCTGAAA
* * * * * * * *
37460722 TTGTAGTAGGTTAGAATGAAGCTACAATGGCGAGTTTTATCTCTCTGAAGTTGCAGTGGAGCAAG
1 TTGTAGTGGGTTGGAATAAAGCTACAAT-GCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAG
** * *
37460787 ACAAAGCTACAAATCTTATATCCC-TGAAG
65 ATGAAGCTACAAATCCTATA-CCCTTAAAG
** * * * * * * *
37460816 TTGTAGTGGCATAGATTGAAA-CTACAGTAGCAAATCTCATCTCTCTAAAGATACAGTGGAGCAA
1 TTGTAGTGGGTTGGAAT-AAAGCTACAAT-GCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAA
* *
37460880 GATTAAGCTACGACCTCAAATCCTAT-CTTCC-TGAAG
64 GATGAAGCT---A---CAAATCCTATAC--CCTTAAAG
* *** * *
37460916 TTGCAGTGAAATGG-ATAAAG-T---A-GC-AATCTTATCTCCTTAAAGTTGCAGTGGAGTAAGA
1 TTGTAGTGGGTTGGAATAAAGCTACAATGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGA
* *
37460974 TGAAGCTACAAATCTTATACCCCTGAAA-
66 TGAAGCTACAAATCCTATA-CCCTTAAAG
* * * **
37461002 TTGTAGTCGGTTGGAATGAAGCTACAAT-AATGAATCTTATCTCCCTGAAA--TGCAGTAAAGCA
1 TTGTAGTGGGTTGGAATAAAGCTACAATGCA--AATCTTATCTCCCT-AAAGTTGCAGTGGAGCA
* * *
37461064 AGATGAAGTTATAAATCCTATACCCTTAAAT
63 AGATGAAGCTACAAATCCTATACCCTTAAAG
* * * * * * * *
37461095 TTATAATGGGTTGGAATACAGCTACAATGGAAAATCTTATCTCTCTGAATTTGTAGTAGG-GCAA
1 TTGTAGTGGGTTGGAATAAAGCTACAAT-GCAAATCTTATCTCCCTAAAGTTGCAGT-GGAGCAA
* * ** ***
37461159 GATAAAGTTACAACATTAAATATGGTTTTCTTAAAG
64 GATGAAGCTACAA-A-T-CCTA---TACCCTTAAAG
* *** * * *
37461195 TTGCAGTGAAATGG-ATAAAG-T---A-GC-AATATTATCTCCTTAAAGTTGTAGTGGAGCAAGA
1 TTGTAGTGGGTTGGAATAAAGCTACAATGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGA
*
37461253 TGAAGCTACAAATCCTATACCCCTAAAG
66 TGAAGCTACAAATCCTATACCCTTAAAG
* *
37461281 CTGTAGTGGGTTGGAATAAAGCTACAATGGCAAATCTTATCTCCCTAAAGTTGTAGT-GAGGCAA
1 TTGTAGTGGGTTGGAATAAAGCTACAAT-GCAAATCTTATCTCCCTAAAGTTGCAGTGGA-GCAA
* * * *** *
37461345 GATAAAGCTACAACATTAAATCTGGTTTTCTTGAAG
64 GATGAAGCTACAA-A-T---CCT-ATACCCTTAAAG
* *** * * *
37461381 TTGCAGTGAAATAG-ATAAAG---C-A-GC-AATCTTATCTCCCTAAAGTTGCAATAGAGCAAGA
1 TTGTAGTGGGTTGGAATAAAGCTACAATGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGA
*
37461439 TGAAGCTACAAATACTATACCCTTAAAG
66 TGAAGCTACAAATCCTATACCCTTAAAG
* * * * * * *
37461467 TTGCATTGGGTTGGAGTGAAGTTACAATAGCGAATCTTGTCTCCCTAAAGTTGCAGTGGAGCAAG
1 TTGTAGTGGGTTGGAATAAAGCTACAAT-GCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAG
*
37461532 ATAAAGCTACAAATCC
65 ATGAAGCTACAAATCC
37461548 CGTATCCCTG
Statistics
Matches: 543, Mismatches: 129, Indels: 120
0.69 0.16 0.15
Matches are distributed among these distances:
86 52 0.10
87 19 0.03
88 3 0.01
89 3 0.01
90 3 0.01
91 7 0.01
92 117 0.22
93 77 0.14
94 170 0.31
95 11 0.02
96 3 0.01
97 3 0.01
98 6 0.01
99 14 0.03
100 55 0.10
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (93 bp):
TTGTAGTGGGTTGGAATAAAGCTACAATGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGA
TGAAGCTACAAATCCTATACCCTTAAAG
Found at i:37461882 original size:237 final size:236
Alignment explanation
Indices: 37461464--37462077 Score: 811
Period size: 237 Copynumber: 2.6 Consensus size: 236
37461454 TATACCCTTA
* * * * * *
37461464 AAGTTGCATTGGGTTGGAGTGAAGTTACAATAGCGAATCTTGTCTCCCTAAAGTTGCAGTGGAGC
1 AAGTTGCAGTAGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAGC
* ** * *
37461529 AAGATAAAGCTACAAATCCCGTATCCCTGAAGATATAGTAGATCAGGTTGAAACTACAATAGCAA
66 AAGATAAAGCTACAAAT-CCGTATCCTTGAAGATGCAATAGATCAGATTGAAACTACAATAGCAA
* * *
37461594 ATCTCATCTCCACGAAGACGCAATAGTGCAAGATAAAGCTACAATATTAAATCTAGTTTTCTTAA
130 ATCTCATCTCCACGAAGACACAATAGGGCAAGATAAAGCTACAACATTAAATCTAGTTTTCTTAA
* *
37461659 AGTTGCAATGAAACAGATAAAGCAGCAATTCCAATCCCCCTG
195 AGCTGCAATGAAACAGATAAAGCAACAATTCCAATCCCCCTG
* * *
37461701 AAGTTGCAGTAGGTTGGAATGAAGCTACAATAACGAATCTTATCTCACTAAAGTTGTAGTAGAGC
1 AAGTTGCAGTAGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAGC
*
37461766 AAGATAAAGTTACAAATCTCGTATCCTTGAAGATGCAATAGATCAGATTGAAACTACAATAGCAA
66 AAGATAAAGCTACAAATC-CGTATCCTTGAAGATGCAATAGATCAGATTGAAACTACAATAGCAA
* * * * *
37461831 ATCTCATCTCTACGAAGATACAATGGGGCAAGATAAAGCTACAACATTAAATCTGGTTTTCTTGA
130 ATCTCATCTCCACGAAGACACAATAGGGCAAGATAAAGCTACAACATTAAATCTAGTTTTCTTAA
* * *
37461896 AGCTGCAGTGAAACAGATAAAGCAACAATTCTAGTCCCCCTG
195 AGCTGCAATGAAACAGATAAAGCAACAATTCCAATCCCCCTG
* * *
37461938 AAGTAGCAGTAGGTTGAAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAATTGTAGTGGAGC
1 AAGTTGCAGTAGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAGC
* * * * * * *
37462003 AAGATGAAGCTGCAAATCC-TATACTCTTGAA-ATTGCAATGGTTGA-AATGAAACTACAACAGC
66 AAGATAAAGCTACAAATCCGTAT-C-CTTGAAGA-TGCAATAGATCAGATTGAAACTACAATAGC
*
37462065 AAATCTTATCTCC
128 AAATCTCATCTCC
37462078 TTGAAGTTGC
Statistics
Matches: 329, Mismatches: 44, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
235 3 0.01
236 30 0.09
237 296 0.90
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (236 bp):
AAGTTGCAGTAGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAGC
AAGATAAAGCTACAAATCCGTATCCTTGAAGATGCAATAGATCAGATTGAAACTACAATAGCAAA
TCTCATCTCCACGAAGACACAATAGGGCAAGATAAAGCTACAACATTAAATCTAGTTTTCTTAAA
GCTGCAATGAAACAGATAAAGCAACAATTCCAATCCCCCTG
Found at i:37464871 original size:16 final size:16
Alignment explanation
Indices: 37464850--37464883 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
37464840 AATAAAATAA
37464850 GTTAAACACTCAATTT
1 GTTAAACACTCAATTT
37464866 GTTAAACACTCAATTT
1 GTTAAACACTCAATTT
37464882 GT
1 GT
37464884 ATTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (16 bp):
GTTAAACACTCAATTT
Found at i:37464985 original size:31 final size:31
Alignment explanation
Indices: 37464937--37465000 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
37464927 ACTTTATATT
*
37464937 AATTTATTAAATTAAATTAAAAATGTTACTA
1 AATTTATTAAATAAAATTAAAAATGTTACTA
* * *
37464968 AATTTATTATAA-AAAATTATAAATTTTATTA
1 AATTTATTA-AATAAAATTAAAAATGTTACTA
37464999 AA
1 AA
37465001 AAAATCAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 26 0.93
32 2 0.07
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (31 bp):
AATTTATTAAATAAAATTAAAAATGTTACTA
Found at i:37464990 original size:21 final size:21
Alignment explanation
Indices: 37464952--37465005 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
37464942 ATTAAATTAA
**
37464952 ATTAAAAATGTTACTAAA-TTT
1 ATTAAAAAAATTA-TAAATTTT
37464973 ATTATAAAAAATTATAAATTTT
1 ATTA-AAAAAATTATAAATTTT
37464995 ATTAAAAAAAT
1 ATTAAAAAAAT
37465006 CAAATTAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 15 0.52
22 14 0.48
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
ATTAAAAAAATTATAAATTTT
Found at i:37465492 original size:51 final size:51
Alignment explanation
Indices: 37465434--37465535 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
37465424 TAGTTGACAA
*
37465434 AGTACAATATTATTTAATTACATAAACAATATAATGGTTTTGTTTTTTTAT
1 AGTACAATATTATTTAATTACATAAACAATATAATGGTTTTGCTTTTTTAT
37465485 AGTACAATATTATTTAATTACATAAACAATATAATGGTTTTGCTTTTTTAT
1 AGTACAATATTATTTAATTACATAAACAATATAATGGTTTTGCTTTTTTAT
37465536 TTAGTGGATA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.48
Consensus pattern (51 bp):
AGTACAATATTATTTAATTACATAAACAATATAATGGTTTTGCTTTTTTAT
Found at i:37468374 original size:11 final size:11
Alignment explanation
Indices: 37468358--37468391 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
37468348 TTTTGTCTCA
37468358 CGCTACAGTAT
1 CGCTACAGTAT
37468369 CGCTACAGTAT
1 CGCTACAGTAT
37468380 CGCTACAGTAT
1 CGCTACAGTAT
37468391 C
1 C
37468392 TAATCTCACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (11 bp):
CGCTACAGTAT
Found at i:37469993 original size:22 final size:20
Alignment explanation
Indices: 37469961--37470010 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
37469951 CTAGCCAGAA
37469961 TATATTATGTTATAAAAATTAAT
1 TATA-TATGTTA-AAAAA-TAAT
* *
37469984 TATATATGTTAAATAATATT
1 TATATATGTTAAAAAATAAT
37470004 TATATAT
1 TATATAT
37470011 ATTTATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 10 0.40
21 4 0.16
22 7 0.28
23 4 0.16
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (20 bp):
TATATATGTTAAAAAATAAT
Found at i:37474165 original size:5 final size:5
Alignment explanation
Indices: 37474155--37474180 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
37474145 ATTTTAATAA
37474155 AAATT AAATT AAATT AAATT AAATT A
1 AAATT AAATT AAATT AAATT AAATT A
37474181 GAGATGATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AAATT
Found at i:37475649 original size:60 final size:60
Alignment explanation
Indices: 37475556--37475680 Score: 250
Period size: 60 Copynumber: 2.1 Consensus size: 60
37475546 AAAGACCCTA
37475556 TACTTAAGTGTTTGTTCTAGTGTAATACCTATATTTTCAAAATGTCCAATTTAATTTTTG
1 TACTTAAGTGTTTGTTCTAGTGTAATACCTATATTTTCAAAATGTCCAATTTAATTTTTG
37475616 TACTTAAGTGTTTGTTCTAGTGTAATACCTATATTTTCAAAATGTCCAATTTAATTTTTG
1 TACTTAAGTGTTTGTTCTAGTGTAATACCTATATTTTCAAAATGTCCAATTTAATTTTTG
37475676 TACTT
1 TACTT
37475681 TGCTTCTTCT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 65 1.00
ACGTcount: A:0.28, C:0.12, G:0.11, T:0.49
Consensus pattern (60 bp):
TACTTAAGTGTTTGTTCTAGTGTAATACCTATATTTTCAAAATGTCCAATTTAATTTTTG
Found at i:37478787 original size:16 final size:16
Alignment explanation
Indices: 37478750--37478791 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
37478740 TTAATCATAT
*
37478750 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
37478766 TT-AAATATATTATAA
1 TTAAAATATATTATAA
37478781 TTAAAATATAT
1 TTAAAATATAT
37478792 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:37478798 original size:14 final size:15
Alignment explanation
Indices: 37478759--37478800 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
37478749 TTTAAACATA
*
37478759 ATTATTATTAAATAT
1 ATTATAATTAAATAT
37478774 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
37478788 A-TATAATTTAATA
1 ATTATAATTAAATA
37478801 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:37478863 original size:61 final size:60
Alignment explanation
Indices: 37478798--37478985 Score: 165
Period size: 61 Copynumber: 3.1 Consensus size: 60
37478788 ATATAATTTA
*
37478798 ATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATAATAATATGTGATACT
1 ATAAAATTCTTAATAAT-AATATTCTTATATGAATTTACTCAAATAATAATATATGATACT
* * * * * * *
37478859 ATAAAATATAATTTAA-CATAATTATTATTAAAT--ATATTA-T-AATTAA-AATATATAAT-TT
1 ATAAAAT-T--CTTAATAATAA-TATTCTTATATGAAT-TTACTCAAATAATAATATATGATACT
* *
37478917 AATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGGTACT
1 -ATAAAATTCTTAATAA-TAATATTCTTATATGAATTTACTCAAATAATAATATATGATACT
37478979 ATAAAAT
1 ATAAAAT
37478986 ATATTTTAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 28
0.68 0.12 0.20
Matches are distributed among these distances:
56 4 0.04
57 10 0.10
58 8 0.08
59 18 0.19
60 9 0.09
61 25 0.26
62 7 0.07
63 11 0.11
64 4 0.04
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.42
Consensus pattern (60 bp):
ATAAAATTCTTAATAATAATATTCTTATATGAATTTACTCAAATAATAATATATGATACT
Found at i:37478888 original size:120 final size:120
Alignment explanation
Indices: 37478748--37478994 Score: 440
Period size: 120 Copynumber: 2.0 Consensus size: 120
37478738 ATTTAATCAT
37478748 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
37478813 ATCAATATTCTTATATGAATTTACTCAAATAATAATATGTGATACTATAAAATATA
65 ATCAATATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAATATA
37478869 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
* * *
37478934 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGGTACTATAAAATATA
66 TCAATATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAATATA
*
37478989 TTTTAA
1 ATTTAA
37478995 TTAAAATATA
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
120 117 0.97
121 4 0.03
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
TCAATATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAATATA
Found at i:37478909 original size:16 final size:16
Alignment explanation
Indices: 37478865--37478911 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
37478855 TACTATAAAA
*
37478865 TATAATTTAACATA-AT
1 TATAA-TTAAAATATAT
*
37478881 TATTATT-AAATATAT
1 TATAATTAAAATATAT
37478896 TATAATTAAAATATAT
1 TATAATTAAAATATAT
37478912 AATTTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 4 0.15
15 10 0.38
16 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TATAATTAAAATATAT
Found at i:37479001 original size:16 final size:16
Alignment explanation
Indices: 37478979--37479018 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
37478969 ATATGGTACT
37478979 ATAAAATATAT-TTTA
1 ATAAAATATATATTTA
37478994 ATTAAAATATATGATTTA
1 A-TAAAATATAT-ATTTA
37479012 ATAAAAT
1 ATAAAAT
37479019 TTAAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 1 0.05
16 10 0.45
17 6 0.27
18 5 0.23
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
ATAAAATATATATTTA
Found at i:37479049 original size:120 final size:119
Alignment explanation
Indices: 37478748--37479041 Score: 362
Period size: 120 Copynumber: 2.4 Consensus size: 119
37478738 ATTTAATCAT
* * * *
37478748 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACAAAATTATGATTAAATAAATTATAA-TAAAATATATAATCTAATAAAATTCTTAATA
*
37478813 ATCAATATTCTTATATGAATTTACTCAAATAATAATATGTGATACTATAAAATATA
64 ATCAATATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAATATA
* * * *
37478869 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 ATTTAACAAAATTATGATTAAATAAATTATAA-TAAAATATATAATCTAATAAAATTCTTAATAA
* * *
37478934 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGGTACTATAAAATATA
65 TCAATATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAATATA
* * *
37478989 TTTTAATTAAAATATATGATTTAATAAAATT-TAA-AATAAT-TATAA-CTAATAAA
1 ATTTAA-CAAAAT-TATGATTAAAT-AAATTATAATAA-AATATATAATCTAATAAA
37479042 TTTTCTTATA
Statistics
Matches: 158, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
119 7 0.04
120 124 0.78
121 11 0.07
122 12 0.08
123 4 0.03
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (119 bp):
ATTTAACAAAATTATGATTAAATAAATTATAATAAAATATATAATCTAATAAAATTCTTAATAAT
CAATATTCTTATATGAATTTACTCAAATAATAATATATGATACTATAAAATATA
Found at i:37479151 original size:10 final size:9
Alignment explanation
Indices: 37479136--37479291 Score: 55
Period size: 10 Copynumber: 17.3 Consensus size: 9
37479126 TAATAAATTT
37479136 TTTATATGAA
1 TTTATAT-AA
37479146 TTTATATAA
1 TTTATATAA
*
37479155 TTTAAAATAA
1 TTT-ATATAA
37479165 -TTA-AT-A
1 TTTATATAA
37479171 TGTTATATAA
1 T-TTATATAA
37479181 TTTA-ATAA
1 TTTATATAA
*
37479189 TGATATATAA
1 T-TTATATAA
37479199 TTTCATA-AA
1 TTT-ATATAA
*
37479208 ATTATTGATAA
1 TTTA-T-ATAA
* **
37479219 --TAAATTT
1 TTTATATAA
37479226 TCTTATATGAA
1 T-TTATAT-AA
37479237 TTTATATAA
1 TTTATATAA
*
37479246 TTTAAAATAA
1 TTT-ATATAA
37479256 -TTA-AT-A
1 TTTATATAA
*
37479262 TTAAATATAA
1 TT-TATATAA
37479272 TTTA-ATAA
1 TTTATATAA
*
37479280 TATATATAA
1 TTTATATAA
37479289 TTT
1 TTT
37479292 CATAAAATTC
Statistics
Matches: 110, Mismatches: 15, Indels: 43
0.65 0.09 0.26
Matches are distributed among these distances:
6 2 0.02
7 7 0.06
8 19 0.17
9 38 0.35
10 41 0.37
11 3 0.03
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.48
Consensus pattern (9 bp):
TTTATATAA
Found at i:37479154 original size:90 final size:90
Alignment explanation
Indices: 37479035--37479331 Score: 481
Period size: 90 Copynumber: 3.3 Consensus size: 90
37479025 TAATTATAAC
* * *
37479035 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTCATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
37479100 AATATATAATTTCATAAAATTCTTGA
66 -ATATATAATTTCATAAAATTCTTGA
*
37479126 TAATAAATTTT-TTATATGAATTTATATAATTTAAAATAATTAATATGT-TATATAATTTAATAA
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATAT-TAAATATAATTTAATAA
*
37479189 TGATATATAATTTCATAAAATTATTGA
65 T-ATATATAATTTCATAAAATTCTTGA
37479216 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
37479281 ATATATAATTTCATAAAATTCTTAA
66 ATATATAATTTCATAAAATTCTTGA
*
37479306 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAATTTTCTTATATGAATTTA
37479332 CTAAAATTAT
Statistics
Matches: 192, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
90 110 0.57
91 82 0.43
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (90 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
ATATATAATTTCATAAAATTCTTGA
Found at i:37479197 original size:18 final size:18
Alignment explanation
Indices: 37479161--37479206 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
37479151 ATAATTTAAA
*
37479161 ATAA-TTAAT-ATGTTAT
1 ATAATTTAATAATGATAT
37479177 ATAATTTAATAATGATAT
1 ATAATTTAATAATGATAT
*
37479195 ATAATTTCATAA
1 ATAATTTAATAA
37479207 AATTATTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 4 0.15
17 5 0.19
18 17 0.65
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (18 bp):
ATAATTTAATAATGATAT
Found at i:37479278 original size:17 final size:17
Alignment explanation
Indices: 37479243--37479291 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
37479233 TGAATTTATA
37479243 TAAT-TTAAA-ATAA-T
1 TAATATTAAATATAATT
37479257 TAATATTAAATATAATT
1 TAATATTAAATATAATT
* *
37479274 TAATAATATATATAATT
1 TAATATTAAATATAATT
37479291 T
1 T
37479292 CATAAAATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
14 4 0.13
15 5 0.17
16 4 0.13
17 17 0.57
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATTAAATATAATT
Found at i:37483571 original size:35 final size:35
Alignment explanation
Indices: 37483531--37483646 Score: 115
Period size: 35 Copynumber: 3.3 Consensus size: 35
37483521 CGTTAGTCAA
* *
37483531 ATAAACCGACGATAGGTGTGCCCTGCACTAGTTGG
1 ATAAACCGACGATAGGTGTGCCCTACACTAGTCGG
* * ** * * * *
37483566 ATAAACTGACAATATTTTGCGCCCAACGCTAGTCGA
1 ATAAACCGACGATA-GGTGTGCCCTACACTAGTCGG
*
37483602 ATAAACCGATGATAGGTGTGCCCTACACTAGTCGG
1 ATAAACCGACGATAGGTGTGCCCTACACTAGTCGG
*
37483637 ATAAATCGAC
1 ATAAACCGAC
37483647 AATGTTTTGC
Statistics
Matches: 59, Mismatches: 21, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
35 35 0.59
36 24 0.41
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.23
Consensus pattern (35 bp):
ATAAACCGACGATAGGTGTGCCCTACACTAGTCGG
Found at i:37483669 original size:71 final size:71
Alignment explanation
Indices: 37483493--37483746 Score: 217
Period size: 71 Copynumber: 3.5 Consensus size: 71
37483483 TACCTGACGA
* * *
37483493 ATAAATCGTAACAAAGTTTTGC-GCCTAGCGTTAGTCAAATAAACCGACGATAGGTGTGCCCTGC
1 ATAAATCG--ACAATGTTTTGCGGCC-AGCGCTAGTCAAATAAACCGACGATAGGTGTGCCCTAC
*
37483557 ACTAGTTGG
63 ACTAGTCGG
* * * * *
37483566 ATAAA-CTGACAATATTTTGCGCCCAACGCTAGTCGAATAAACCGATGATAGGTGTGCCCTACAC
1 ATAAATC-GACAATGTTTTGCGGCCAGCGCTAGTCAAATAAACCGACGATAGGTGTGCCCTACAC
37483630 TAGTCGG
65 TAGTCGG
* * * * * *
37483637 ATAAATCGACAATGTTTTGCGGCCAGCACTAGTTAGATAAATCGACAATGTCAAATGTGTG-CCT
1 ATAAATCGACAATGTTTTGCGGCCAGCGCTAGTCAAATAAACCGAC---G--ATAGGTGTGCCCT
37483701 AGCACTAGTCGG
61 A-CACTAGTCGG
* ** * *
37483713 ATAAACCGACAATGAATTGTGCCCAGCGCTAGTC
1 ATAAATCGACAATGTTTTGCGGCCAGCGCTAGTC
37483747 GGATAAACTG
Statistics
Matches: 145, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
71 86 0.59
72 4 0.03
73 6 0.04
74 1 0.01
75 4 0.03
76 44 0.30
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (71 bp):
ATAAATCGACAATGTTTTGCGGCCAGCGCTAGTCAAATAAACCGACGATAGGTGTGCCCTACACT
AGTCGG
Found at i:37483716 original size:40 final size:39
Alignment explanation
Indices: 37483659--37483772 Score: 119
Period size: 36 Copynumber: 2.9 Consensus size: 39
37483649 TGTTTTGCGG
**
37483659 CCAGCACTAGTTAGATAAATCGACAATGTCAAATGTGTGC
1 CCAGCACTAGTCGGATAAA-CGACAATGTCAAATGTGTGC
*
37483699 CTAGCACTAGTCGGATAAACCGACAATG---AAT-TGTGC
1 CCAGCACTAGTCGGATAAA-CGACAATGTCAAATGTGTGC
* * *
37483735 CCAGCGCTAGTCGGATAAACTGAAAATATCAAATGTGT
1 CCAGCACTAGTCGGATAAAC-GACAATGTCAAATGTGT
37483773 TTACGTAATT
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
35 1 0.02
36 27 0.44
37 3 0.05
39 3 0.05
40 27 0.44
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (39 bp):
CCAGCACTAGTCGGATAAACGACAATGTCAAATGTGTGC
Found at i:37483739 original size:76 final size:76
Alignment explanation
Indices: 37483617--37483772 Score: 190
Period size: 76 Copynumber: 2.1 Consensus size: 76
37483607 CCGATGATAG
* ** * *
37483617 GTGTGCCCTACACTAGTCGGATAAATCGACAATGTTTTGCGGCCAGCACTAGTTAGATAAA-TCG
1 GTGTGCCCTACACTAGTCGGATAAACCGACAATGAATTGCGCCCAGCACTAGTCAGATAAACT-G
* *
37483681 ACAATGTCAAAT
65 AAAATATCAAAT
* * *
37483693 GTGTG-CCTAGCACTAGTCGGATAAACCGACAATGAATTGTGCCCAGCGCTAGTCGGATAAACTG
1 GTGTGCCCTA-CACTAGTCGGATAAACCGACAATGAATTGCGCCCAGCACTAGTCAGATAAACTG
37483757 AAAATATCAAAT
65 AAAATATCAAAT
37483769 GTGT
1 GTGT
37483773 TTACGTAATT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
75 4 0.06
76 63 0.93
77 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (76 bp):
GTGTGCCCTACACTAGTCGGATAAACCGACAATGAATTGCGCCCAGCACTAGTCAGATAAACTGA
AAATATCAAAT
Found at i:37483745 original size:36 final size:36
Alignment explanation
Indices: 37483547--37483754 Score: 143
Period size: 36 Copynumber: 5.7 Consensus size: 36
37483537 CGACGATAGG
* * * *
37483547 TGTGCCCTGCACTAGTTGGATAAACTGACAAT-ATTT
1 TGTGCCCAGCACTAGTCGGATAAACCGACAATGA-AT
* * * * ** **
37483583 TGCGCCCAACGCTAGTCGAATAAACCGATGAT-AGG
1 TGTGCCCAGCACTAGTCGGATAAACCGACAATGAAT
* **
37483618 TGTGCCCTA-CACTAGTCGGATAAATCGACAATGTTT
1 TGTGCCC-AGCACTAGTCGGATAAACCGACAATGAAT
* * ** *
37483654 TGCGGCCAGCACTAGTTAGATAAATCGACAATGTCAAAT
1 TGTGCCCAGCACTAGTCGGATAAACCGACAATG---AAT
*
37483693 GTGTGCCTAGCACTAGTCGGATAAACCGACAATGAAT
1 -TGTGCCCAGCACTAGTCGGATAAACCGACAATGAAT
*
37483730 TGTGCCCAGCGCTAGTCGGATAAAC
1 TGTGCCCAGCACTAGTCGGATAAAC
37483755 TGAAAATATC
Statistics
Matches: 131, Mismatches: 34, Indels: 14
0.73 0.19 0.08
Matches are distributed among these distances:
35 25 0.19
36 75 0.57
37 3 0.02
39 1 0.01
40 27 0.21
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (36 bp):
TGTGCCCAGCACTAGTCGGATAAACCGACAATGAAT
Found at i:37491404 original size:17 final size:16
Alignment explanation
Indices: 37491378--37491411 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
37491368 TACTTCACTT
*
37491378 GAAAAAGAAAAGAAAA
1 GAAAAAGAAAAAAAAA
37491394 GAAAAATGAAAAAAAAA
1 GAAAAA-GAAAAAAAAA
37491411 G
1 G
37491412 GAGAGGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (16 bp):
GAAAAAGAAAAAAAAA
Found at i:37492834 original size:100 final size:100
Alignment explanation
Indices: 37492661--37493859 Score: 1603
Period size: 100 Copynumber: 12.1 Consensus size: 100
37492651 TACCTCTAAG
* * * *** *
37492661 ATTGCAATTTAAAAGATTGAAACTGCAATAACGAATCTTACTTCCATGGCGATGCAGTGGAGCAT
1 ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAG
* *
37492726 ATTAAAGCTACGACGGCGAATCTTGCTTCCTCGAC
66 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * *
37492761 ATTGCAATTAAAAAGATTGAAGTCGCAACGACGAATCTTACTTCTATGGCGATGCAGTGGAGCAG
1 ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAG
* *
37492826 ATTAAAGCTACAACAGTGAATCTTGCTTCCCCGAC
66 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * * *
37492861 ATTGCAATT-AAAAGATTGATGCCACAACGGCGAATCTTACTTTCCA-GGCGGTGCAGTGGAACA
1 ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTAC-TTCCATGGCGATGCAGTGGAGCA
* * * * *
37492924 GATTGAAGCTATAAAGGCGAATCTCGCTTCCCCGAT
65 GATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* *
37492960 ATTGCAATT-AAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATACAATGGAGCAG
1 ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAG
37493024 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
66 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * *
37493059 ATTGCAATTAAAAAGATTGAAGCCGCAACAGTGAATCTTACTTTCATGGCGATGCAGTGGAGCAG
1 ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAG
*
37493124 ATTAAAGCTACAACGGTGAATCTTGCTTCCCCGAC
66 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * **
37493159 ATTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCA-GGCGGTGCAGTGGAATA
1 ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTT-CCATGGCGATGCAGTGGAGCA
* * * *
37493222 GATTGAAGCTATAAAGGCGAATCTCGCTTCCCCGAC
65 GATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * *
37493258 ATTGCAATTAAAAAGATTGAAGCCGCAACAGTGAATCTTACTTCCATGGCGGTGCAGTGGAGCAG
1 ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAG
* * *
37493323 ATTAAAGCTACAACGGTGAATCTTGCTTCCACAAC
66 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * * *
37493358 ATTCCAATTAAAAAGATTGAAGCCGTAACGGCGAATCTTACTTCCCTGGTGATGCAGTGGAGCAG
1 ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAG
*
37493423 ATTAAAGCTACAACGGTGAATCTTGCTTCCCCGAC
66 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * *
37493458 ATTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCA-GGCGGTGCAGTGGAACA
1 ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTT-CCATGGCGATGCAGTGGAGCA
* * * * *
37493521 GATTGAAGCTATAAAGGCAAATCTCGCTTCCCCGAC
65 GATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * * *
37493557 ATTGCAATTAAAAAGATTGAAGCCGCAACAGCGAATCTTACTTCCATGGTGATACAATGGAGCAG
1 ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAG
* *
37493622 ATTAAAGCTACAACAGCGGATCTTGCTTCCCCGAC
66 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * *
37493657 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTC-T-GCTAATGCAGTGGATC
1 ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTC-CATGGC-GATGCAGTGGAGC
* *
37493720 AGATTGAAGCTATAACGGCGAATCTTG-TTCCCCGAC
64 AGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * **
37493756 ATTGCAATT-AAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGATACAGTGGAATAG
1 ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAG
* *
37493820 ATTGAAGCTACAACGGCGAATCTTG-TTCTCCGAC
66 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
*
37493854 GTTGCA
1 ATTGCA
37493860 GTCAATTTGA
Statistics
Matches: 964, Mismatches: 122, Indels: 28
0.87 0.11 0.03
Matches are distributed among these distances:
97 1 0.00
98 87 0.09
99 357 0.37
100 518 0.54
101 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (100 bp):
ATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAG
ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGAC
Found at i:37493075 original size:199 final size:200
Alignment explanation
Indices: 37492692--37493859 Score: 1604
Period size: 199 Copynumber: 5.9 Consensus size: 200
37492682 ACTGCAATAA
* * *
37492692 CGAATCTTACTTCCATGGCGATGCAGTGGAGCATATTAAAGCTACGACGGCGAATCTTGCTTCCT
1 CGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCC
* * * *
37492757 CGACATTGCAATTAAAAAGATTGAAGTCGCAACGACGAATCTTACTTCTATGGCGATGCAGTGGA
66 CGACATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATACAGTGGA
* * *
37492822 GCAGATTAAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAATT-AAAAGATTGATGCCAC
131 GCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCAC
37492886 AACGG
196 AACGG
* * * * * *
37492891 CGAATCTTACTTTCCA-GGCGGTGCAGTGGAACAGATTGAAGCTATAAAGGCGAATCTCGCTTCC
1 CGAATCTTAC-TTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCC
* *
37492955 CCGATATTGCAATT-AAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATACAATGG
65 CCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATACAGTGG
*
37493019 AGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCG
130 AGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
*
37493084 CAACAG
195 CAACGG
* * *
37493090 TGAATCTTACTTTCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCC
1 CGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCC
* * *
37493155 CGACATTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCA-GGCGGTGCAGTGG
66 CGACATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTT-CCATGGCGATACAGTGG
** * * * * *
37493218 AATAGATTGAAGCTATAAAGGCGAATCTCGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCG
130 AGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
*
37493283 CAACAG
195 CAACGG
* * * *
37493289 TGAATCTTACTTCCATGGCGGTGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCA
1 CGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCC
* * * * * *
37493354 CAACATTCCAATTAAAAAGATTGAAGCCGTAACGGCGAATCTTACTTCCCTGGTGATGCAGTGGA
66 CGACATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATACAGTGGA
*
37493419 GCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATT-AAAAGATTGAAGCCAC
131 GCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCAC
37493483 AACGG
196 AACGG
* * * * * * *
37493488 CGAATCTTACTTCCCA-GGCGGTGCAGTGGAACAGATTGAAGCTATAAAGGCAAATCTCGCTTCC
1 CGAATCTTACTT-CCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCC
* * *
37493552 CCGACATTGCAATTAAAAAGATTGAAGCCGCAACAGCGAATCTTACTTCCATGGTGATACAATGG
65 CCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATACAGTGG
* *
37493617 AGCAGATTAAAGCTACAACAGCGGATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
130 AGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
37493682 CAACGG
195 CAACGG
* * * *
37493688 CGAATCTTACTTCTC-T-GCTAATGCAGTGGATCAGATTGAAGCTATAACGGCGAATCTTG-TTC
1 CGAATCTTACTTC-CATGGC-GATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTC
*
37493750 CCCGACATTGCAATT-AAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGATACAGTG
64 CCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATACAGTG
** * * *
37493814 GAATAGATTGAAGCTACAACGGCGAATCTTG-TTCTCCGACGTTGCA
129 GAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCA
37493860 GTCAATTTGA
Statistics
Matches: 863, Mismatches: 95, Indels: 24
0.88 0.10 0.02
Matches are distributed among these distances:
197 13 0.02
198 167 0.19
199 520 0.60
200 163 0.19
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (200 bp):
CGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCC
CGACATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATACAGTGGA
GCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCAC
AACGG
Found at i:37493435 original size:299 final size:299
Alignment explanation
Indices: 37492661--37493859 Score: 1868
Period size: 299 Copynumber: 4.0 Consensus size: 299
37492651 TACCTCTAAG
* * * * * * * *
37492661 ATTGCAATTTAAAAGATTGAAACTGCAATAACGAATCTTACTTCCATGGCGATGCAGTGGAGCAT
1 ATTGCAATTAAAAAGATTGAAGCCGCAACAGCGAATCTTACTTCCATGGCGATACAATGGAGCAG
* * *
37492726 ATTAAAGCTACGACGGCGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGTCGCAACG
66 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACG
* * *
37492791 ACGAATCTTACTTCTATGGCGATGCAGTGGAGCAGATTAAAGCTACAACAGTGAATCTTGCTTCC
131 GCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCC
* *
37492856 CCGACATTGCAATTAAAAGATTGATGCCACAACGGCGAATCTTACTTTCCAGGCGGTGCAGTGGA
196 CCGACATTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGGTGCAGTGGA
*
37492921 ACAGATTGAAGCTATAAAGGCGAATCTCGCTTCCCCGAT
261 ACAGATTGAAGCTATAAAGGCGAATCTCGCTTCCCCGAC
*
37492960 ATTGCAATT-AAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATACAATGGAGCAG
1 ATTGCAATTAAAAAGATTGAAGCCGCAACAGCGAATCTTACTTCCATGGCGATACAATGGAGCAG
*
37493024 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACA
66 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACG
* *
37493089 GTGAATCTTACTTTCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCC
131 GCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCC
37493154 CCGACATTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGGTGCAGTGGA
196 CCGACATTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGGTGCAGTGGA
*
37493219 ATAGATTGAAGCTATAAAGGCGAATCTCGCTTCCCCGAC
261 ACAGATTGAAGCTATAAAGGCGAATCTCGCTTCCCCGAC
* * * *
37493258 ATTGCAATTAAAAAGATTGAAGCCGCAACAGTGAATCTTACTTCCATGGCGGTGCAGTGGAGCAG
1 ATTGCAATTAAAAAGATTGAAGCCGCAACAGCGAATCTTACTTCCATGGCGATACAATGGAGCAG
* * * * *
37493323 ATTAAAGCTACAACGGTGAATCTTGCTTCCACAACATTCCAATTAAAAAGATTGAAGCCGTAACG
66 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACG
* *
37493388 GCGAATCTTACTTCCCTGGTGATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCC
131 GCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCC
37493453 CCGACATTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGGTGCAGTGGA
196 CCGACATTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGGTGCAGTGGA
*
37493518 ACAGATTGAAGCTATAAAGGCAAATCTCGCTTCCCCGAC
261 ACAGATTGAAGCTATAAAGGCGAATCTCGCTTCCCCGAC
*
37493557 ATTGCAATTAAAAAGATTGAAGCCGCAACAGCGAATCTTACTTCCATGGTGATACAATGGAGCAG
1 ATTGCAATTAAAAAGATTGAAGCCGCAACAGCGAATCTTACTTCCATGGCGATACAATGGAGCAG
* * *
37493622 ATTAAAGCTACAACAGCGGATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACG
66 ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACG
* * * * *
37493687 GCGAATCTTACTTCTC-T-GCTAATGCAGTGGATCAGATTGAAGCTATAACGGCGAATCTTG-TT
131 GCGAATCTTACTTC-CATGGC-GATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTT
* * * *
37493749 CCCCGACATTGCAATTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGATACAGTG
194 CCCCGACATTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGGTGCAGTG
* * * * *
37493814 GAATAGATTGAAGCTACAACGGCGAATCTTG-TTCTCCGAC
259 GAACAGATTGAAGCTATAAAGGCGAATCTCGCTTCCCCGAC
*
37493854 GTTGCA
1 ATTGCA
37493860 GTCAATTTGA
Statistics
Matches: 829, Mismatches: 68, Indels: 8
0.92 0.08 0.01
Matches are distributed among these distances:
297 13 0.02
298 367 0.44
299 448 0.54
300 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (299 bp):
ATTGCAATTAAAAAGATTGAAGCCGCAACAGCGAATCTTACTTCCATGGCGATACAATGGAGCAG
ATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACG
GCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCC
CCGACATTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGGTGCAGTGGA
ACAGATTGAAGCTATAAAGGCGAATCTCGCTTCCCCGAC
Found at i:37493930 original size:44 final size:43
Alignment explanation
Indices: 37493877--37494221 Score: 213
Period size: 44 Copynumber: 7.9 Consensus size: 43
37493867 TGAAAGAAAT
**
37493877 CAATCTTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCA
1 CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCA
** * * *** *
37493920 CAGATCTTATCTCCCT-AAGCAGTAGTAGAGCAGA-TCGCATCA
1 CA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCA
* * * * * ** *
37493962 -AGTCTCATCTCTCTGAAGTTGCAGTGGAGTAAACGAAAGA-AA
1 CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-ACCA
* * *
37494004 CCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCA
1 -CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCA
* * * *
37494048 CAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCACACCATAA
1 CA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC---A
*
37494094 CAAACCTTATCTCCCTGAAGTTGCAGTGGAG-A-ATGTGAAGATA-C-
1 C-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-T-AA-A-ACCA
* * * *
37494138 CAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
1 CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCA
* * *
37494181 CTAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAA
1 C-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA
37494222 TGATGAATCT
Statistics
Matches: 223, Mismatches: 57, Indels: 43
0.69 0.18 0.13
Matches are distributed among these distances:
40 10 0.04
41 13 0.06
42 6 0.03
43 51 0.23
44 108 0.48
45 3 0.01
46 28 0.13
47 2 0.01
48 1 0.00
49 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (43 bp):
CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCA
Found at i:37494112 original size:46 final size:44
Alignment explanation
Indices: 37494011--37494172 Score: 139
Period size: 46 Copynumber: 3.7 Consensus size: 44
37494001 AAACCAATCC
* * * * * *
37494011 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAATAACAAACCT
* *
37494055 TATCTCTCTGAAGTTGCAGTAGAGCAGATCACACCATAACAAACCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCA-A-AATAACAAACCT
* * * * * *
37494101 TATCTCCCTGAAGTTGCAGTGGAGAATG-TGAAGAT-ACCAATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCA-GATCAAAATAACAAACCT
* *
37494144 TATTTCCCTGAAGTTGCAGTGGAGCAGAT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGAT
37494173 TGAAGCTACT
Statistics
Matches: 97, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
42 1 0.01
43 31 0.32
44 29 0.30
45 2 0.02
46 33 0.34
47 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAATAACAAACCT
Found at i:37494155 original size:43 final size:44
Alignment explanation
Indices: 37493968--37494217 Score: 215
Period size: 44 Copynumber: 5.7 Consensus size: 44
37493958 ATCAAGTCTC
* * ** * *
37493968 ATCTCTCTGAAGTTGCAGTGGAGTA-AACGAAAGAAACCAATCCT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTG-AAGATACCAATCTT
* *
37494012 ATCTCCCTGAAGTTGCAGTGGAGCGGATT-AAAAT-CACAGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC-CA-ATCTT
* * * * * *
37494056 ATCTCTCTGAAGTTGCAGTAGAGCAGA-TCACACCATAACAAACCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-A-GAT-ACCAATCTT
37494102 ATCTCCCTGAAGTTGCAGTGGAG-A-ATGTGAAGATACCAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGAT-TGAAGATACCAATCTT
* * * *
37494145 ATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACTAATCCT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAATCTT
* *
37494189 ATCTCCCTGAAGTTACAGTGGAGCGGATT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATT
37494218 AAAATGATGA
Statistics
Matches: 167, Mismatches: 27, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
42 1 0.01
43 35 0.21
44 94 0.56
45 6 0.04
46 29 0.17
47 1 0.01
48 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAATCTT
Found at i:37494192 original size:133 final size:133
Alignment explanation
Indices: 37493868--37494212 Score: 350
Period size: 133 Copynumber: 2.6 Consensus size: 133
37493858 CAGTCAATTT
* * ** * *
37493868 GAAAGAAATCAATCTTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTC
1 GAAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACAGATCCTATCTC
* * * ** * *
37493933 CCT-AAG-CAGTAGTAGAGCAGAT--C-GCAT--CAAGTCTCATCTCTCTGAAGTTGCAGTGGAG
66 CCTGAAGTTA-CAGTAGAGCAGATCACACCATAACAAACCTTATCTCCCTGAAGTTGCAGTGGAG
37493991 TAAAC
130 -AAAC
* *
37493996 GAAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTC
1 GAAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACAGATCCTATCTC
* *
37494061 TCTGAAGTTGCAGTAGAGCAGATCACACCATAACAAACCTTATCTCCCTGAAGTTGCAGTGGAG-
66 CCTGAAGTTACAGTAGAGCAGATCACACCATAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGA
*
37494125 AAT
131 AAC
* * * * * *
37494128 GTGAAGATACCAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATT-GAAGCTACTA-ATCCTAT
1 G-AAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATC-AC-AGATCCTAT
*
37494191 CTCCCTGAAGTTACAGTGGAGC
63 CTCCCTGAAGTTACAGTAGAGC
37494213 GGATTAAAAT
Statistics
Matches: 182, Mismatches: 25, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
128 63 0.35
129 15 0.08
131 1 0.01
132 9 0.05
133 66 0.36
134 28 0.15
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (133 bp):
GAAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACAGATCCTATCTC
CCTGAAGTTACAGTAGAGCAGATCACACCATAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGA
AAC
Found at i:37494378 original size:18 final size:18
Alignment explanation
Indices: 37494351--37494385 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37494341 TTATCTCCCT
*
37494351 GAAGTCGCAGTGGAGCAA
1 GAAGTCGCAGTAGAGCAA
*
37494369 GAAGTTGCAGTAGAGCA
1 GAAGTCGCAGTAGAGCA
37494386 GACTAAAACC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.37, T:0.14
Consensus pattern (18 bp):
GAAGTCGCAGTAGAGCAA
Found at i:37496160 original size:2 final size:2
Alignment explanation
Indices: 37496153--37496208 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
37496143 TTTTGATTGT
37496153 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37496195 TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA T
37496209 TTTTGTTTTG
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37497728 original size:159 final size:158
Alignment explanation
Indices: 37497439--37497760 Score: 599
Period size: 159 Copynumber: 2.0 Consensus size: 158
37497429 ATGTTTAACT
37497439 CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTCAACT
1 CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTCAACT
37497504 TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
66 TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
37497569 TAGAGTCCTAAAACAGTCCCTATACTACC
131 TAGAGTCCTAAAACAGTCCCTATACTA-C
* *
37497598 CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTTAATT
1 CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTCAACT
*
37497663 TAGTCCATACTTCAATATTCAAGCAATTAACCTCATTAAATTAAATCTCTTCTCAACCAAATTTA
66 TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
*
37497728 TAGAGTCCTAAAATAGTCCCTATACTAC
131 TAGAGTCCTAAAACAGTCCCTATACTAC
37497756 CAACA
1 CAACA
37497761 TTCTATAGTT
Statistics
Matches: 159, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
158 6 0.04
159 153 0.96
ACGTcount: A:0.37, C:0.25, G:0.03, T:0.34
Consensus pattern (158 bp):
CAACAATTCATCTTATAATTATCATTTCACACATTTACCCCCCAACAATTTAATTTCATTCAACT
TAGTCCATACTTCAATATTCAAGCAATTAACATCATTAAATTAAATCTCTTCTCAACCAAATTTA
TAGAGTCCTAAAACAGTCCCTATACTAC
Found at i:37499504 original size:45 final size:45
Alignment explanation
Indices: 37499455--37499594 Score: 115
Period size: 45 Copynumber: 3.1 Consensus size: 45
37499445 TATTCACCTG
* *
37499455 CAATTTTGGTGGTTCATTCACATATTATCCGGCAGCTATTATCTA
1 CAATTTTAGTGGTTCATTCACATATTATCCGGAAGCTATTATCTA
* * * * * * * *
37499500 CAATTATA-TTGTGT-ACTCACA-ATCATCCGGTAGCGCATTAACTTG
1 CAATTTTAGTGGT-TCATTCACATATTATCCGGAAGC-TATTATC-TA
* * *
37499545 CAATTTTAGTGGTTCATTCACATATTATTCTGAAGTTATTATCTA
1 CAATTTTAGTGGTTCATTCACATATTATCCGGAAGCTATTATCTA
37499590 CAATT
1 CAATT
37499595 ATGTTGTGTA
Statistics
Matches: 69, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
43 11 0.16
44 14 0.20
45 22 0.32
46 14 0.20
47 8 0.12
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (45 bp):
CAATTTTAGTGGTTCATTCACATATTATCCGGAAGCTATTATCTA
Found at i:37499520 original size:44 final size:44
Alignment explanation
Indices: 37499470--37499610 Score: 115
Period size: 45 Copynumber: 3.2 Consensus size: 44
37499460 TTGGTGGTTC
*
37499470 ATTCACATATTATCCGGCAGCTATTATCTACAATTATATTGTGT
1 ATTCACATATTATCCGGAAGCTATTATCTACAATTATATTGTGT
* * * * * * * *
37499514 ACTCACA-ATCATCCGGTAGCGCATTAACTTGCAATTTTAGTG-GTT
1 ATTCACATATTATCCGGAAGC-TATTATC-TACAATTATATTGTG-T
* * * *
37499559 CATTCACATATTATTCTGAAGTTATTATCTACAATTATGTTGTGT
1 -ATTCACATATTATCCGGAAGCTATTATCTACAATTATATTGTGT
37499604 ATTCACA
1 ATTCACA
37499611 AGCATCTTGC
Statistics
Matches: 71, Mismatches: 20, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
43 11 0.15
44 19 0.27
45 21 0.30
46 12 0.17
47 8 0.11
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (44 bp):
ATTCACATATTATCCGGAAGCTATTATCTACAATTATATTGTGT
Found at i:37499547 original size:90 final size:90
Alignment explanation
Indices: 37499397--37499657 Score: 308
Period size: 90 Copynumber: 2.9 Consensus size: 90
37499387 AATTATCTTA
* * * *
37499397 CAGCTATTATCTGA-AATTATGTTGTGTACTCACAACCATCCGACACCGTATTCACCTGCAATTT
1 CAGCTATTATCT-ACAATTATGTTGTGTACTCACAACCATCCGGCAACGTATTAACTTGCAATTT
37499461 TGGTGGTTCATTCACATATTATCCGG
65 TGGTGGTTCATTCACATATTATCCGG
* * * * *
37499487 CAGCTATTATCTACAATTATATTGTGTACTCACAATCATCCGGTAGCGCATTAACTTGCAATTTT
1 CAGCTATTATCTACAATTATGTTGTGTACTCACAACCATCCGGCAACGTATTAACTTGCAATTTT
* * *
37499552 AGTGGTTCATTCACATATTATTCTG
66 GGTGGTTCATTCACATATTATCCGG
* * * * ** *
37499577 AAGTTATTATCTACAATTATGTTGTGTATTCACAAGCATCTTGCAACGTATTAACTTGCAACATT
1 CAGCTATTATCTACAATTATGTTGTGTACTCACAACCATCCGGCAACGTATTAACTTGCAA-TTT
* *
37499642 TGGTGATTCATCCACA
65 TGGTGGTTCATTCACA
37499658 ACTCGGTGTG
Statistics
Matches: 144, Mismatches: 25, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
89 1 0.01
90 128 0.89
91 15 0.10
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (90 bp):
CAGCTATTATCTACAATTATGTTGTGTACTCACAACCATCCGGCAACGTATTAACTTGCAATTTT
GGTGGTTCATTCACATATTATCCGG
Found at i:37501370 original size:30 final size:30
Alignment explanation
Indices: 37501336--37501398 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
37501326 ACTTGACAAG
37501336 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
37501366 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
37501396 CAA
1 CAA
37501399 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:37502085 original size:22 final size:20
Alignment explanation
Indices: 37502036--37502086 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 20
37502026 TCCAACCCGA
37502036 ATATATTATGTTATAAAAATT
1 ATATA-TATGTTATAAAAATT
37502057 A-ATTATATGTTAAATAAAAATT
1 ATA-TATATGTT--ATAAAAATT
37502079 ATATATAT
1 ATATATAT
37502087 TATATTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 7 0.27
21 3 0.12
22 15 0.58
23 1 0.04
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
ATATATATGTTATAAAAATT
Found at i:37504346 original size:40 final size:40
Alignment explanation
Indices: 37504302--37504413 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 40
37504292 GATTTTTAAC
*
37504302 AAACGCCGCAAAAGATTGAGCATTAGCGGCGCTTGTTG-A
1 AAACGCCGCTAAAGATTGAGCATTAGCGGCGCTTGTTGTA
* *
37504341 GAAACGTCGCTAAAGATTGAGCATTAGCGGCGCTTTTTGTA
1 -AAACGCCGCTAAAGATTGAGCATTAGCGGCGCTTGTTGTA
* * **
37504382 AAACGCCGCTATAGGTCAAGCATTAGCGGCGC
1 AAACGCCGCTAAAGATTGAGCATTAGCGGCGC
37504414 CGCAAAAAAG
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 62 0.98
41 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
AAACGCCGCTAAAGATTGAGCATTAGCGGCGCTTGTTGTA
Found at i:37504357 original size:196 final size:192
Alignment explanation
Indices: 37503992--37504524 Score: 526
Period size: 196 Copynumber: 2.8 Consensus size: 192
37503982 GCGCTTTTCC
* * * *
37503992 TAAAACGTCGCAAAAGATCAAGCATTAGCGGCGCTTTTGAGAAAGCGCCGCAAAAAAGTTAAGCA
1 TAAAACGCCGCTAAAGGTCAAGCATTAGCGGCGCTTTTGAGAAAACGCCGCAAAAAAGTTAAGCA
* * * * *
37504057 AAACGACGTTTTCTGTTGAGCTTTACGGACATTAATGGCGCTTTTTAACAAACGCCGTAATATAT
66 AAACGACGTTTTCTGTTGAGCTTTACGGACATTAACGGCGATTTTTAACAAACGCCGCAAAAGAT
* * *
37504122 CGAGCATTAGCGATGCTTATTGAGAAATGGCACTAAAGATCAAGTAATAACGGCACTTTCTA
131 CGAGCATTAGCGACGCTTATTGAGAAACGGCACTAAAGATCAAGCAATAACGGCACTTTCTA
* * *
37504184 TAAAACGCCGCTAAAGGTC-AGACATTAGCGGCGCTTTTTAGAAAACGCCGTAAAAAAGTTGAGC
1 TAAAACGCCGCTAAAGGTCAAG-CATTAGCGGCGCTTTTGAGAAAACGCCGCAAAAAAGTTAAGC
*
37504248 AAAACGACCTCGTTTTCTTTTTGCA-CTTTACTGGA-ATTAACGGCGATTTTTAACAAACGCCGC
65 AAAACGA---CGTTTTC-TGTTG-AGCTTTAC-GGACATTAACGGCGATTTTTAACAAACGCCGC
* * * * * ** * * *
37504311 AAAAGATTGAGCATTAGCGGCGCTTGTTGAGAAACGTCGCTAAAGATTGAGCATTAGCGGCGCTT
124 AAAAGATCGAGCATTAGCGACGCTTATTGAGAAACGGCACTAAAGATCAAGCAATAACGGCACTT
* *
37504376 TTTG
189 TCTA
*
37504380 TAAAACGCCGCTATAGGTCAAGCATTA-----GC----G-G----CGCCGCAAAAAAGTTAAGCA
1 TAAAACGCCGCTAAAGGTCAAGCATTAGCGGCGCTTTTGAGAAAACGCCGCAAAAAAGTTAAGCA
* * * * *
37504431 AAACAACGTTTTCTTTTGTTGAGCTTTAGGGACATTAGCGGCGCTTTTTAACAAACGCCGCAATA
66 AAACGACGTTTTC---TGTTGAGCTTTACGGACATTAACGGCGATTTTTAACAAACGCCGCAAAA
* *
37504496 GATTGAGCATTAGCGGCGCTTATTG-GAAA
128 GATCGAGCATTAGCGACGCTTATTGAGAAA
37504525 ACGCTGCAAA
Statistics
Matches: 290, Mismatches: 39, Indels: 36
0.79 0.11 0.10
Matches are distributed among these distances:
179 7 0.02
180 8 0.03
181 63 0.22
182 23 0.08
186 1 0.00
191 4 0.01
192 61 0.21
195 7 0.02
196 110 0.38
197 6 0.02
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (192 bp):
TAAAACGCCGCTAAAGGTCAAGCATTAGCGGCGCTTTTGAGAAAACGCCGCAAAAAAGTTAAGCA
AAACGACGTTTTCTGTTGAGCTTTACGGACATTAACGGCGATTTTTAACAAACGCCGCAAAAGAT
CGAGCATTAGCGACGCTTATTGAGAAACGGCACTAAAGATCAAGCAATAACGGCACTTTCTA
Found at i:37504623 original size:7 final size:7
Alignment explanation
Indices: 37504608--37504638 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
37504598 GGTTTAGGGA
*
37504608 TTATGGT
1 TTATTGT
37504615 TTATTGT
1 TTATTGT
37504622 TTATTGT
1 TTATTGT
37504629 TTATTGT
1 TTATTGT
37504636 TTA
1 TTA
37504639 AGGGTTGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (7 bp):
TTATTGT
Found at i:37504666 original size:14 final size:14
Alignment explanation
Indices: 37504649--37504687 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
37504639 AGGGTTGAGG
37504649 TTTAAGGTTTATAA
1 TTTAAGGTTTATAA
* *
37504663 TTTATGTTTTATAA
1 TTTAAGGTTTATAA
*
37504677 TTTAGGGTTTA
1 TTTAAGGTTTA
37504688 GATGATAGAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.56
Consensus pattern (14 bp):
TTTAAGGTTTATAA
Found at i:37504739 original size:14 final size:14
Alignment explanation
Indices: 37504697--37504867 Score: 105
Period size: 14 Copynumber: 11.9 Consensus size: 14
37504687 AGATGATAGA
37504697 GGTTAGGGGTTTAAG
1 GGTTA-GGGTTTAAG
* *
37504712 GATTATGCGGTTTATG
1 GGTTA-G-GGTTTAAG
*
37504728 GGTTATGGTTTAAG
1 GGTTAGGGTTTAAG
37504742 GGTTAGGGTTTAAG
1 GGTTAGGGTTTAAG
* *
37504756 GTTTAAGGG-ATATA-
1 GGTT-AGGGTTTA-AG
37504770 GGTTAGGGGTTTAAG
1 GGTTA-GGGTTTAAG
** * **
37504785 CATTATGGTTTGTG
1 GGTTAGGGTTTAAG
* *
37504799 GTTTATGGTTTAAG
1 GGTTAGGGTTTAAG
*
37504813 GGTTGGGGTTTAAG
1 GGTTAGGGTTTAAG
*
37504827 GTTTA-GGTGTTAAG
1 GGTTAGGGT-TTAAG
*
37504841 GGTTAGGGGTTAAG
1 GGTTAGGGTTTAAG
*
37504855 GGATAGGGGTTTA
1 GGTTA-GGGTTTA
37504868 TGGTTTATAG
Statistics
Matches: 118, Mismatches: 29, Indels: 18
0.72 0.18 0.11
Matches are distributed among these distances:
13 4 0.03
14 80 0.68
15 23 0.19
16 11 0.09
ACGTcount: A:0.21, C:0.01, G:0.39, T:0.39
Consensus pattern (14 bp):
GGTTAGGGTTTAAG
Found at i:37504834 original size:6 final size:7
Alignment explanation
Indices: 37504720--37504855 Score: 51
Period size: 7 Copynumber: 19.3 Consensus size: 7
37504710 AGGATTATGC
*
37504720 GGTTTAT
1 GGTTTAA
* *
37504727 GGGTTAT
1 GGTTTAA
37504734 GGTTTAA
1 GGTTTAA
* *
37504741 GGGTTAG
1 GGTTTAA
37504748 GGTTTAA
1 GGTTTAA
37504755 GGTTTAA
1 GGTTTAA
**
37504762 GGGATATA
1 GGTTTA-A
*
37504770 GG-TTAGG
1 GGTTTA-A
37504777 GGTTTAA
1 GGTTTAA
** *
37504784 GCATTAT
1 GGTTTAA
**
37504791 GGTTTGT
1 GGTTTAA
*
37504798 GGTTTAT
1 GGTTTAA
37504805 GGTTTAA
1 GGTTTAA
* **
37504812 GGGTTGG
1 GGTTTAA
37504819 GGTTTAA
1 GGTTTAA
37504826 GGTTT-A
1 GGTTTAA
37504832 GGTGTTAA
1 GGT-TTAA
* *
37504840 GGGTTAG
1 GGTTTAA
*
37504847 GGGTTAA
1 GGTTTAA
37504854 GG
1 GG
37504856 GATAGGGGTT
Statistics
Matches: 95, Mismatches: 30, Indels: 8
0.71 0.23 0.06
Matches are distributed among these distances:
6 4 0.04
7 82 0.86
8 9 0.09
ACGTcount: A:0.21, C:0.01, G:0.39, T:0.40
Consensus pattern (7 bp):
GGTTTAA
Found at i:37504866 original size:71 final size:72
Alignment explanation
Indices: 37504691--37504875 Score: 227
Period size: 71 Copynumber: 2.6 Consensus size: 72
37504681 GGGTTTAGAT
* *
37504691 GATAGAGGTTAGGGGTTTAAGGATTATGCGGTTTATGGGTTATGGTTTAAGGGTTAGGGTTTAAG
1 GATATAGGTTAGGGGTTTAAGGATTA-GCGGTTTATGGTTTATGGTTTAAGGGTTAGGGTTTAAG
37504756 GTTTAAGG
65 GTTTAAGG
* * * *
37504764 GATATAGGTTAGGGGTTTAAGCATTA-TGGTTTGTGGTTTATGGTTTAAGGGTTGGGGTTTAAGG
1 GATATAGGTTAGGGGTTTAAGGATTAGCGGTTTATGGTTTATGGTTTAAGGGTTAGGGTTTAAGG
37504828 TTT-AGG
66 TTTAAGG
* *
37504834 TGTTA-AGGGTTAGGGG-TTAAGGGA-TAGGGGTTTATGGTTTAT
1 -GATATA-GGTTAGGGGTTTAA-GGATTAGCGGTTTATGGTTTAT
37504876 AGCTCATGTT
Statistics
Matches: 98, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
70 10 0.10
71 64 0.65
73 24 0.24
ACGTcount: A:0.22, C:0.01, G:0.38, T:0.39
Consensus pattern (72 bp):
GATATAGGTTAGGGGTTTAAGGATTAGCGGTTTATGGTTTATGGTTTAAGGGTTAGGGTTTAAGG
TTTAAGG
Found at i:37504959 original size:7 final size:7
Alignment explanation
Indices: 37504927--37505038 Score: 66
Period size: 7 Copynumber: 15.9 Consensus size: 7
37504917 GGGGTTTAGT
*
37504927 GTTTATG
1 GTTTAAG
*
37504934 GTTCAAG
1 GTTTAAG
* *
37504941 GGTTAGG
1 GTTTAAG
37504948 GTTTAAG
1 GTTTAAG
37504955 GTTTAA-
1 GTTTAAG
37504961 GTGTTAAG
1 GT-TTAAG
*
37504969 GGTTAATG
1 GTTTAA-G
* *
37504977 G-ATATG
1 GTTTAAG
*
37504983 AGTTTAGG
1 -GTTTAAG
37504991 GTTTAAG
1 GTTTAAG
37504998 GTTTAAG
1 GTTTAAG
*
37505005 GGTTAAG
1 GTTTAAG
* *
37505012 GTCTAGG
1 GTTTAAG
37505019 GTTTAAG
1 GTTTAAG
* *
37505026 GTCTAGG
1 GTTTAAG
37505033 GTTTAA
1 GTTTAA
37505039 AATTGATATG
Statistics
Matches: 77, Mismatches: 23, Indels: 10
0.70 0.21 0.09
Matches are distributed among these distances:
6 3 0.04
7 68 0.88
8 6 0.08
ACGTcount: A:0.25, C:0.03, G:0.34, T:0.38
Consensus pattern (7 bp):
GTTTAAG
Found at i:37505036 original size:14 final size:14
Alignment explanation
Indices: 37504987--37505038 Score: 79
Period size: 14 Copynumber: 3.7 Consensus size: 14
37504977 GATATGAGTT
*
37504987 TAGGGTTTAAGGTT
1 TAGGGTTTAAGGTC
37505001 TAAGGG-TTAAGGTC
1 T-AGGGTTTAAGGTC
37505015 TAGGGTTTAAGGTC
1 TAGGGTTTAAGGTC
37505029 TAGGGTTTAA
1 TAGGGTTTAA
37505039 AATTGATATG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
13 4 0.11
14 27 0.77
15 4 0.11
ACGTcount: A:0.25, C:0.04, G:0.35, T:0.37
Consensus pattern (14 bp):
TAGGGTTTAAGGTC
Found at i:37505472 original size:20 final size:20
Alignment explanation
Indices: 37505449--37505487 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
37505439 CACCCAGCCC
37505449 CTAATTCCCTTTCCAAATCA
1 CTAATTCCCTTTCCAAATCA
37505469 CTAATTCCCTTTCCAAATC
1 CTAATTCCCTTTCCAAATC
37505488 CCTTCCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.36, G:0.00, T:0.36
Consensus pattern (20 bp):
CTAATTCCCTTTCCAAATCA
Found at i:37507985 original size:3 final size:3
Alignment explanation
Indices: 37507979--37508023 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
37507969 GATAAGTAGC
* * *
37507979 AAT AAT ATT AGT AAT AAT AAT AAT AAT AGT AAT AAT AAAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AA
37508024 AAGATGATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:37508016 original size:15 final size:15
Alignment explanation
Indices: 37507960--37508022 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
37507950 AGCTATTATA
37507960 TAATAATATGATAAGTAG
1 TAATAATA--ATAA-TAG
* * * *
37507978 CAATAATATTAGTAA
1 TAATAATAATAATAG
37507993 TAATAATAATAATAG
1 TAATAATAATAATAG
37508008 TAATAATAAATAATA
1 TAATAAT-AATAATA
37508023 AAAGATGATA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
15 20 0.56
16 9 0.25
18 7 0.19
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (15 bp):
TAATAATAATAATAG
Found at i:37509863 original size:123 final size:121
Alignment explanation
Indices: 37509658--37509884 Score: 391
Period size: 123 Copynumber: 1.9 Consensus size: 121
37509648 CTTTGAAGAA
* *
37509658 TTAATATGTAACCTATATTAGTATGATATATAACCTACATTTCAAATTCAATACTAATAAGTTTT
1 TTAATATATAACCTATATTAGTATGATATATAACCTACATTTCAAAGTCAATACTAATAAGTTTT
* *
37509723 TAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
66 AAAATTCTAAAAATAATTATAATTATTATA-TTTTAAATAACTTAAAACCTATATTT
*
37509780 TTAATATATAACCTATATTAGTATGGATATATAACCTACATTTCAAAGTCATTACTAATAAGTTT
1 TTAATATATAACCTATATTAGTAT-GATATATAACCTACATTTCAAAGTCAATACTAATAAGTTT
37509845 TAAAATTCTAAAAATAATTATAATTATTATATTTTAAATA
65 TAAAATTCTAAAAATAATTATAATTATTATATTTTAAATA
37509885 TTATATCACT
Statistics
Matches: 99, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
122 32 0.32
123 67 0.68
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (121 bp):
TTAATATATAACCTATATTAGTATGATATATAACCTACATTTCAAAGTCAATACTAATAAGTTTT
AAAATTCTAAAAATAATTATAATTATTATATTTTAAATAACTTAAAACCTATATTT
Found at i:37509962 original size:9 final size:9
Alignment explanation
Indices: 37509948--37510229 Score: 85
Period size: 9 Copynumber: 32.1 Consensus size: 9
37509938 ACTAATTTCC
*
37509948 ACATAACAT
1 ACATAACTT
37509957 ACATAACTT
1 ACATAACTT
*
37509966 ACATAATTT
1 ACATAACTT
*
37509975 ACATAA-AT
1 ACATAACTT
* * *
37509983 ATATATCAT
1 ACATAACTT
*
37509992 ATCAAAACTT
1 A-CATAACTT
*
37510002 ACATGACTT
1 ACATAACTT
*
37510011 ACATAATTT
1 ACATAACTT
37510020 ACATAACTTT
1 ACATAAC-TT
* *
37510030 AAAGAA-TT
1 ACATAACTT
* *
37510038 GAAAAAAAAACTT
1 ----ACATAACTT
37510051 ACATAACTT
1 ACATAACTT
**
37510060 ACATATTTT
1 ACATAACTT
*
37510069 ACATAA-AT
1 ACATAACTT
* * *
37510077 ATATATCATAA
1 ACATAAC-T-T
*
37510088 ATATAACTT
1 ACATAACTT
*
37510097 ACATAACAT
1 ACATAACTT
37510106 ACATAA---
1 ACATAACTT
*
37510112 ATATAACTT
1 ACATAACTT
37510121 ACATAA---
1 ACATAACTT
*
37510127 ATATAACTT
1 ACATAACTT
37510136 ACATAACTT
1 ACATAACTT
37510145 ACATAA--T
1 ACATAACTT
*
37510152 ACATAA-AT
1 ACATAACTT
* * *
37510160 ATATATCAT
1 ACATAACTT
37510169 ATCATAACTT
1 A-CATAACTT
37510179 ACATAACTT
1 ACATAACTT
**
37510188 ATTTATACTT
1 ACATA-ACTT
37510198 ACATAA--T
1 ACATAACTT
37510205 ACATAA---
1 ACATAACTT
*
37510211 ATATAACTT
1 ACATAACTT
37510220 ACATAACTT
1 ACATAACTT
37510229 A
1 A
37510230 TTTATACTTA
Statistics
Matches: 203, Mismatches: 46, Indels: 48
0.68 0.15 0.16
Matches are distributed among these distances:
6 15 0.07
7 14 0.07
8 17 0.08
9 119 0.59
10 25 0.12
11 6 0.03
12 5 0.02
13 2 0.01
ACGTcount: A:0.50, C:0.15, G:0.01, T:0.34
Consensus pattern (9 bp):
ACATAACTT
Found at i:37510061 original size:94 final size:84
Alignment explanation
Indices: 37509956--37510188 Score: 265
Period size: 94 Copynumber: 2.7 Consensus size: 84
37509946 CCACATAACA
* *
37509956 TACATAACTTACATAATTTACATAAATATATATCATATCAAAACTTACATGACTTACATAATTTA
1 TACATAACTTACATAATTTACATAAATATATATCATATCATAACTTACATAACTTACATAA---A
37510021 CATAACTTTAAAGAATTGAAAAAAAAACT
63 CATAAC-TT--A-AA-T--AAAAAAAACT
* * *
37510050 TACATAACTTACATATTTTACATAAATATATATCATAAAT-ATAACTTACATAACATACATAAAT
1 TACATAACTTACATAATTTACATAAATATATATCAT--ATCATAACTTACATAACTTACATAAAC
* * *
37510114 ATAACTTACATAAATATAACT
64 ATAACTTAAATAAAAAAAACT
37510135 TACATAACTTACATAA--TACATAAATATATATCATATCATAACTTACATAACTTA
1 TACATAACTTACATAATTTACATAAATATATATCATATCATAACTTACATAACTTA
37510189 TTTATACTTA
Statistics
Matches: 126, Mismatches: 10, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
81 2 0.02
82 16 0.13
83 18 0.14
85 23 0.18
87 1 0.01
88 1 0.01
89 1 0.01
91 2 0.02
92 6 0.05
94 35 0.28
95 19 0.15
96 2 0.02
ACGTcount: A:0.50, C:0.15, G:0.01, T:0.34
Consensus pattern (84 bp):
TACATAACTTACATAATTTACATAAATATATATCATATCATAACTTACATAACTTACATAAACAT
AACTTAAATAAAAAAAACT
Found at i:37510117 original size:15 final size:15
Alignment explanation
Indices: 37510099--37510141 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
37510089 TATAACTTAC
*
37510099 ATAACATACATAAAT
1 ATAACTTACATAAAT
37510114 ATAACTTACATAAAT
1 ATAACTTACATAAAT
37510129 ATAACTTACATAA
1 ATAACTTACATAA
37510142 CTTACATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30
Consensus pattern (15 bp):
ATAACTTACATAAAT
Found at i:37510158 original size:31 final size:34
Alignment explanation
Indices: 37510120--37510184 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
37510110 AAATATAACT
*
37510120 TACATAAATATA-A-CTTA-CATAACTTACATAA
1 TACATAAATATATATCATATCATAACTTACATAA
37510151 TACATAAATATATATCATATCATAACTTACATAA
1 TACATAAATATATATCATATCATAACTTACATAA
37510185 CTTATTTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 12 0.40
32 1 0.03
33 3 0.10
34 14 0.47
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (34 bp):
TACATAAATATATATCATATCATAACTTACATAA
Found at i:37510199 original size:19 final size:19
Alignment explanation
Indices: 37510175--37510239 Score: 76
Period size: 19 Copynumber: 3.3 Consensus size: 19
37510165 TCATATCATA
37510175 ACTTACATAACTTATTTAT
1 ACTTACATAACTTATTTAT
* **
37510194 ACTTACATAATACATAAATAT
1 ACTTACAT-A-ACTTATTTAT
37510215 AACTTACATAACTTATTTAT
1 -ACTTACATAACTTATTTAT
37510235 ACTTA
1 ACTTA
37510240 TAAATAAACA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
19 13 0.35
20 8 0.22
21 8 0.22
22 8 0.22
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.42
Consensus pattern (19 bp):
ACTTACATAACTTATTTAT
Found at i:37510229 original size:41 final size:40
Alignment explanation
Indices: 37510077--37510239 Score: 159
Period size: 41 Copynumber: 4.0 Consensus size: 40
37510067 TTACATAAAT
* ** *
37510077 ATATATCATAAATATAACTTACATAACATACATA-AATATAA
1 ATATA-CATAAATATAACTTACATAACTTATTTATACT-TAA
* * * *
37510118 CT-TACATAAATATAACTTACATAACTTACATAATACATAA
1 ATATACATAAATATAACTTACATAACTTA-TTTATACTTAA
* * *
37510158 ATATATATCATATCATAACTTACATAACTTATTTATACTTAC
1 ATATACAT-AAAT-ATAACTTACATAACTTATTTATACTTAA
37510200 ATAATACATAAATATAACTTACATAACTTATTTATACTTA
1 AT-ATACATAAATATAACTTACATAACTTATTTATACTTA
37510240 TAAATAAACA
Statistics
Matches: 100, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
39 23 0.23
40 7 0.07
41 33 0.33
42 15 0.15
43 22 0.22
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (40 bp):
ATATACATAAATATAACTTACATAACTTATTTATACTTAA
Found at i:37512141 original size:23 final size:24
Alignment explanation
Indices: 37512108--37512157 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
37512098 TAATTAGATA
*
37512108 AATGTTATTTAATTATT-TTTTATT
1 AATGTTATTT-AGTATTATTTTATT
37512132 AATGTT-TTTAGTATTATTTTATT
1 AATGTTATTTAGTATTATTTTATT
37512155 AAT
1 AAT
37512158 AAATGATTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 5 0.21
23 13 0.54
24 6 0.25
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
AATGTTATTTAGTATTATTTTATT
Found at i:37518304 original size:44 final size:43
Alignment explanation
Indices: 37518239--37518398 Score: 200
Period size: 44 Copynumber: 3.7 Consensus size: 43
37518229 TTTGAGAATG
*
37518239 AAGCGTCGCTAAAGGTCATGTTATTTAGCGGCGTTTGGTGATAA
1 AAGCGCCGCTAAAGGTCATGTTATTTAGCGGCGTTT-GTGATAA
* * * * *
37518283 AAGTGCCGCTAAAGTTTATGTTATTTAGCGGCGCTTT-T-TTTA
1 AAGCGCCGCTAAAGGTCATGTTATTTAGCGGCG-TTTGTGATAA
* *
37518325 AA-CGCTGCTAAAGGTCATGATATTTAGCGGCGTTTGTGATAA
1 AAGCGCCGCTAAAGGTCATGTTATTTAGCGGCGTTTGTGATAA
*
37518367 AAGCGCCGCTAAAGGTCATGTTCTTTAGCGGC
1 AAGCGCCGCTAAAGGTCATGTTATTTAGCGGC
37518399 ATTTATATGG
Statistics
Matches: 96, Mismatches: 16, Indels: 9
0.79 0.13 0.07
Matches are distributed among these distances:
40 3 0.03
41 26 0.27
42 8 0.08
43 27 0.28
44 29 0.30
45 3 0.03
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCATGTTATTTAGCGGCGTTTGTGATAA
Found at i:37520240 original size:33 final size:32
Alignment explanation
Indices: 37520164--37520240 Score: 75
Period size: 33 Copynumber: 2.3 Consensus size: 32
37520154 TCAAATCATG
* *
37520164 TTTTATTTTTATGTAGTCAAATTTTTTTATTC
1 TTTTAATTTTATGTAGTCAAATTCTTTTATTC
* * *
37520196 TTCTAATTTTTATGTAGGT-AATATTCTTTTCTTT
1 TTTTAA-TTTTATGTA-GTCAA-ATTCTTTTATTC
37520230 TTTTAATTTTA
1 TTTTAATTTTA
37520241 ATTTTCTATT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
32 4 0.11
33 16 0.44
34 16 0.44
ACGTcount: A:0.22, C:0.06, G:0.06, T:0.65
Consensus pattern (32 bp):
TTTTAATTTTATGTAGTCAAATTCTTTTATTC
Found at i:37520258 original size:27 final size:25
Alignment explanation
Indices: 37520214--37520269 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 25
37520204 TTTATGTAGG
37520214 TAATATTCTTTTCTTTTTTTAATTT
1 TAATATTCTTTTCTTTTTTTAATTT
* *
37520239 TAATTTTCTATTTCTATTTTTTATTTT
1 TAATATTCT-TTTCT-TTTTTTAATTT
37520266 TAAT
1 TAAT
37520270 CAAATTTCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 8 0.30
26 5 0.19
27 14 0.52
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (25 bp):
TAATATTCTTTTCTTTTTTTAATTT
Found at i:37520259 original size:20 final size:20
Alignment explanation
Indices: 37520222--37520265 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
37520212 GGTAATATTC
* *
37520222 TTTTCTTTTTTTAATTTTAA
1 TTTTCTATTTCTAATTTTAA
* *
37520242 TTTTCTATTTCTATTTTTTA
1 TTTTCTATTTCTAATTTTAA
37520262 TTTT
1 TTTT
37520266 TAATCAAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTCTATTTCTAATTTTAA
Found at i:37521096 original size:18 final size:17
Alignment explanation
Indices: 37521054--37521096 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
37521044 GACTGATTCA
37521054 ATGTATTCTTCAATTTT
1 ATGTATTCTTCAATTTT
* *
37521071 ATAATATTCTTTCATTTTT
1 AT-GTATTC-TTCAATTTT
37521090 ATGTATT
1 ATGTATT
37521097 ATCATTGACG
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
17 2 0.10
18 9 0.43
19 10 0.48
ACGTcount: A:0.26, C:0.09, G:0.05, T:0.60
Consensus pattern (17 bp):
ATGTATTCTTCAATTTT
Found at i:37521484 original size:21 final size:21
Alignment explanation
Indices: 37521434--37521484 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
37521424 ATCCTAAAAT
37521434 ATAGACCCTAAAACCCTAGAC
1 ATAGACCCTAAAACCCTAGAC
* * *
37521455 TTTGTACCCT-AAACCTTAGACC
1 ATAG-ACCCTAAAACCCTAGA-C
37521477 ATAGACCC
1 ATAGACCC
37521485 ATGGCTCAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 4
0.72 0.16 0.12
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.35, C:0.33, G:0.10, T:0.22
Consensus pattern (21 bp):
ATAGACCCTAAAACCCTAGAC
Found at i:37528071 original size:16 final size:17
Alignment explanation
Indices: 37528052--37528085 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
37528042 TATTTGTTTT
*
37528052 ATTTTAAATAA-ATAAA
1 ATTTTAAAAAAGATAAA
37528068 ATTTTAAAAAAGATAAA
1 ATTTTAAAAAAGATAAA
37528085 A
1 A
37528086 GACTCTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
ATTTTAAAAAAGATAAA
Found at i:37528200 original size:76 final size:76
Alignment explanation
Indices: 37528120--37528268 Score: 271
Period size: 76 Copynumber: 2.0 Consensus size: 76
37528110 AAATGCTTTT
**
37528120 AAAAATATAAATATAAATTTCAAAATTCAATATTATCTAAATTGGATTGGTTAGTGGTTCACCAA
1 AAAAATATAAATATAAATTTCAAAATTCAATATTATCTAAATTGGATTGGTTAACGGTTCACCAA
37528185 TTTTTTTAATC
66 TTTTTTTAATC
*
37528196 AAAAATATAAATATAAATTTCAATATTCAATATTATCTAAATTGGATTGGTTAACGGTTCACCAA
1 AAAAATATAAATATAAATTTCAAAATTCAATATTATCTAAATTGGATTGGTTAACGGTTCACCAA
37528261 TTTTTTTA
66 TTTTTTTA
37528269 TCTCTCATTG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (76 bp):
AAAAATATAAATATAAATTTCAAAATTCAATATTATCTAAATTGGATTGGTTAACGGTTCACCAA
TTTTTTTAATC
Found at i:37528402 original size:26 final size:25
Alignment explanation
Indices: 37528350--37528407 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
37528340 TTTGAAATTT
** **
37528350 TTTTATATTTTTAAAACATTTTTTAA
1 TTTT-TATTTTTAAAACAAATCATAA
37528376 TATTTTATTTTTAAAACAAATCATAA
1 T-TTTTATTTTTAAAACAAATCATAA
37528402 TTTTTA
1 TTTTTA
37528408 AATTTTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 5 0.19
26 19 0.70
27 3 0.11
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (25 bp):
TTTTTATTTTTAAAACAAATCATAA
Found at i:37528944 original size:21 final size:22
Alignment explanation
Indices: 37528920--37528960 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
37528910 TTTTGTTTTG
37528920 TATAAATTAT-TTTTAAAAAAT
1 TATAAATTATATTTTAAAAAAT
* *
37528941 TATAATTTTTATTTTAAAAA
1 TATAAATTATATTTTAAAAA
37528961 TATATTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TATAAATTATATTTTAAAAAAT
Found at i:37528947 original size:20 final size:20
Alignment explanation
Indices: 37528924--37528971 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
37528914 GTTTTGTATA
37528924 AATTATT-TTTAAAAAATTAT
1 AATTATTATTTAAAAAA-TAT
* *
37528944 AATTTTTATTTTAAAAATAT
1 AATTATTATTTAAAAAATAT
*
37528964 ATTTATTA
1 AATTATTA
37528972 AATTTTTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
AATTATTATTTAAAAAATAT
Found at i:37529831 original size:18 final size:17
Alignment explanation
Indices: 37529808--37529845 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
37529798 ATATATATTA
37529808 TATAATAATAA-AATAAAG
1 TATAATAA-AACAA-AAAG
37529826 TATAATAAAACAAAAAG
1 TATAATAAAACAAAAAG
37529843 TAT
1 TAT
37529846 TAAAAGAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (17 bp):
TATAATAAAACAAAAAG
Found at i:37532565 original size:20 final size:20
Alignment explanation
Indices: 37532542--37532598 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
37532532 TTGAATTGAG
37532542 TTAAACAGA-AAAGAATCGAT
1 TTAAACA-ACAAAGAATCGAT
* *
37532562 TTAAAACAATAATGAATCGAT
1 TT-AAACAACAAAGAATCGAT
*
37532583 TCAAACAACAAAGAAT
1 TTAAACAACAAAGAAT
37532599 TGAGTCAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.56, C:0.12, G:0.11, T:0.21
Consensus pattern (20 bp):
TTAAACAACAAAGAATCGAT
Found at i:37532578 original size:41 final size:40
Alignment explanation
Indices: 37532533--37532659 Score: 132
Period size: 41 Copynumber: 3.1 Consensus size: 40
37532523 TGTTAGAGTT
* * *
37532533 TGAATTGAGTTAAACAGAAAAGAATCGATTTAAAACAATAA
1 TGAATCGA-TTAAACAGAAAAGAATTGATTCAAAACAATAA
*
37532574 TGAATCGATTCAAACA-ACAAAGAATTGAGTCAAAACAAT-A
1 TGAATCGATT-AAACAGA-AAAGAATTGATTCAAAACAATAA
* * *
37532614 TACAATCGATTTAAAAAGTAAAGAATTGATTCAAAACAATAA
1 T-GAATCGA-TTAAACAGAAAAGAATTGATTCAAAACAATAA
37532656 TGAA
1 TGAA
37532660 ACTAAGATTG
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
40 5 0.07
41 62 0.87
42 4 0.06
ACGTcount: A:0.54, C:0.10, G:0.13, T:0.24
Consensus pattern (40 bp):
TGAATCGATTAAACAGAAAAGAATTGATTCAAAACAATAA
Done.