Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 123 of 150
Found at i:37532602 original size:61 final size:61
Alignment explanation
Indices: 37532534--37532648 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 61
37532524 GTTAGAGTTT
* * *
37532534 GAATTGAGT-TAAACAGA-AAAGAATCGATTTAAAACAATAATGAATCGATTCAAACAACAAA
1 GAATTGAGTCAAAACA-ATAAACAATCGATTTAAAA-AATAAAGAATCGATTCAAACAACAAA
* * *
37532595 GAATTGAGTCAAAACAATATACAATCGATTTAAAAAGTAAAGAATTGATTCAAA
1 GAATTGAGTCAAAACAATAAACAATCGATTTAAAAAATAAAGAATCGATTCAAA
37532649 ACAATAATGA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
61 26 0.57
62 20 0.43
ACGTcount: A:0.53, C:0.10, G:0.13, T:0.23
Consensus pattern (61 bp):
GAATTGAGTCAAAACAATAAACAATCGATTTAAAAAATAAAGAATCGATTCAAACAACAAA
Found at i:37532649 original size:20 final size:21
Alignment explanation
Indices: 37532551--37532655 Score: 106
Period size: 21 Copynumber: 5.1 Consensus size: 21
37532541 GTTAAACAGA
*
37532551 AAAGAATCGATTTAAAACAAT
1 AAAGAATCGATTCAAAACAAT
* *
37532572 AATGAATCGATTC-AAACAAC
1 AAAGAATCGATTCAAAACAAT
* *
37532592 AAAGAATTGAGTCAAAACAAT
1 AAAGAATCGATTCAAAACAAT
* * * *
37532613 ATACAATCGATTTAAAA-AGT
1 AAAGAATCGATTCAAAACAAT
*
37532633 AAAGAATTGATTCAAAACAAT
1 AAAGAATCGATTCAAAACAAT
37532654 AA
1 AA
37532656 TGAAACTAAG
Statistics
Matches: 64, Mismatches: 18, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
20 31 0.48
21 33 0.52
ACGTcount: A:0.55, C:0.11, G:0.10, T:0.23
Consensus pattern (21 bp):
AAAGAATCGATTCAAAACAAT
Found at i:37539909 original size:17 final size:18
Alignment explanation
Indices: 37539889--37539930 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
37539879 TGTTTAGCAA
37539889 TGTTTTTA-TCTCAAAAG
1 TGTTTTTAGTCTCAAAAG
37539906 TGTTTTTAGTCTCAAAAG
1 TGTTTTTAGTCTCAAAAG
37539924 TGCTTTT
1 TG-TTTT
37539931 GAGAAACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 8 0.35
18 11 0.48
19 4 0.17
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.50
Consensus pattern (18 bp):
TGTTTTTAGTCTCAAAAG
Found at i:37541713 original size:59 final size:58
Alignment explanation
Indices: 37541617--37541754 Score: 188
Period size: 59 Copynumber: 2.4 Consensus size: 58
37541607 TTGTTCATTT
* * *
37541617 GTTTCTTTTAGTGCCCAAACAAATTCAATCCTTGACATTCTGGTTA-TTGTGACTTGTG
1 GTTTCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGG-TAGTTGTGACTTGCG
* * *
37541675 GTTTACTTTTAGTGCCAAAACAAATTTAATTCTTGACATGCTGGTAGTTGTGGCTTGCG
1 GTTT-CTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTAGTTGTGACTTGCG
*
37541734 GTTGCTTTTAGTGCCAAAACA
1 GTTTCTTTTAGTGCCAAAACA
37541755 TAGCAACTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
58 23 0.32
59 48 0.68
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (58 bp):
GTTTCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTAGTTGTGACTTGCG
Found at i:37542862 original size:18 final size:17
Alignment explanation
Indices: 37542832--37542865 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
37542822 AATTTTAAGA
*
37542832 ATAAATGTTAAATTGAT
1 ATAAATGTAAAATTGAT
37542849 ATAATATGTAAAATTGA
1 ATAA-ATGTAAAATTGA
37542866 CGGTTAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (17 bp):
ATAAATGTAAAATTGAT
Found at i:37542983 original size:16 final size:17
Alignment explanation
Indices: 37542950--37542985 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
37542940 ATATTAAGAA
37542950 TTTTATTAAATTATATAT
1 TTTTATTAAA-TATATAT
37542968 TTTTATTAAA-ATATAT
1 TTTTATTAAATATATAT
37542984 TT
1 TT
37542986 AATAGTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTATTAAATATATAT
Found at i:37543085 original size:29 final size:29
Alignment explanation
Indices: 37542930--37543096 Score: 87
Period size: 29 Copynumber: 5.6 Consensus size: 29
37542920 GTATTGTGGT
*
37542930 ATTATATTTAATATTAAGAATTTTATTAA
1 ATTATATTTAATATTAATAATTTTATTAA
** * *
37542959 ATTATATATTTTTATTAAAATATATTTAATAGTA
1 ATTATAT-TTAATATTAATA-AT-TTTATTA--A
* *
37542993 ATTAT-GTTAA-ATT-AT-ATTTTA-TAGT
1 ATTATATTTAATATTAATAATTTTATTA-A
* * *
37543018 ATTATATATTATGATTTTAATAAATTCATATAA
1 ATTATAT-TTA--ATATTAATAATTTTAT-TAA
37543051 GA--ATATTTAATATTAATAATTTTATTAA
1 -ATTATATTTAATATTAATAATTTTATTAA
*
37543079 ATTATATTTAATAATAAT
1 ATTATATTTAATATTAAT
37543097 TATGTTAAAA
Statistics
Matches: 102, Mismatches: 19, Indels: 34
0.66 0.12 0.22
Matches are distributed among these distances:
25 5 0.05
26 2 0.02
27 8 0.08
28 5 0.05
29 35 0.34
30 12 0.12
31 10 0.10
32 16 0.16
34 9 0.09
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (29 bp):
ATTATATTTAATATTAATAATTTTATTAA
Found at i:37543115 original size:26 final size:26
Alignment explanation
Indices: 37542971--37543109 Score: 85
Period size: 26 Copynumber: 5.4 Consensus size: 26
37542961 TATATATTTT
*
37542971 TATTAAAATATATTTAATAGTAATTA
1 TATTAAAATATATTTAATAATAATTA
* * * *
37542997 TGTTAAATTATATTTTATAGT-ATTA
1 TATTAAAATATATTTAATAATAATTA
**
37543022 TA-TATTATGAT-TTTAAT-A-AATTCA
1 TATTAAAAT-ATATTTAATAATAATT-A
* *
37543046 TA-TAAGAATAT-TTAATATTAATAATTT
1 TATTAA-AATATATT--TAATAATAATTA
*
37543073 TATTAAATTATATTTAATAATAATTA
1 TATTAAAATATATTTAATAATAATTA
*
37543099 TGTTAAAATAT
1 TATTAAAATAT
37543110 GATTAAATTA
Statistics
Matches: 85, Mismatches: 18, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
23 3 0.04
24 17 0.20
25 9 0.11
26 40 0.47
27 7 0.08
28 9 0.11
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.50
Consensus pattern (26 bp):
TATTAAAATATATTTAATAATAATTA
Found at i:37543337 original size:16 final size:16
Alignment explanation
Indices: 37543326--37543386 Score: 95
Period size: 16 Copynumber: 3.8 Consensus size: 16
37543316 CTATTACGTC
* *
37543326 TCTATTCTATTACGCC
1 TCTATTCCATTACGCA
*
37543342 TCTATTCCATTACGCT
1 TCTATTCCATTACGCA
37543358 TCTATTCCATTACGCA
1 TCTATTCCATTACGCA
37543374 TCTATTCCATTAC
1 TCTATTCCATTAC
37543387 AGAGAACCAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.21, C:0.31, G:0.05, T:0.43
Consensus pattern (16 bp):
TCTATTCCATTACGCA
Found at i:37543354 original size:32 final size:32
Alignment explanation
Indices: 37543318--37543386 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
37543308 AGGATTACCT
* *
37543318 ATTACG-TCTCTATTCTATTACGCCTCTATTCC
1 ATTACGCT-TCTATTCCATTACGCATCTATTCC
37543350 ATTACGCTTCTATTCCATTACGCATCTATTCC
1 ATTACGCTTCTATTCCATTACGCATCTATTCC
37543382 ATTAC
1 ATTAC
37543387 AGAGAACCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 33 0.97
33 1 0.03
ACGTcount: A:0.22, C:0.30, G:0.06, T:0.42
Consensus pattern (32 bp):
ATTACGCTTCTATTCCATTACGCATCTATTCC
Found at i:37552969 original size:16 final size:16
Alignment explanation
Indices: 37552932--37552970 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
37552922 AAACTAAAGG
*
37552932 GAGAAGAGAAATATCA
1 GAGAAGAGAAAAATCA
37552948 GAGAAGAGAAAAAT-A
1 GAGAAGAGAAAAATCA
37552963 GACGAAGA
1 GA-GAAGA
37552971 AGACAAGAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 3 0.14
16 18 0.86
ACGTcount: A:0.59, C:0.05, G:0.28, T:0.08
Consensus pattern (16 bp):
GAGAAGAGAAAAATCA
Found at i:37558036 original size:38 final size:38
Alignment explanation
Indices: 37557985--37558092 Score: 153
Period size: 38 Copynumber: 2.8 Consensus size: 38
37557975 GATTTACCAT
* *
37557985 TTGTTATAGATTCTCGGGTAATATAATGAGATCTAGCC
1 TTGTTGTAAATTCTCGGGTAATATAATGAGATCTAGCC
*
37558023 TTGTTGTAAATTCTCGGGTAATATAATAAGATCTAGCC
1 TTGTTGTAAATTCTCGGGTAATATAATGAGATCTAGCC
* * * *
37558061 TAGTTGTAATTTGTCGGGTAATATAACGAGAT
1 TTGTTGTAAATTCTCGGGTAATATAATGAGAT
37558093 TCATATTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (38 bp):
TTGTTGTAAATTCTCGGGTAATATAATGAGATCTAGCC
Found at i:37558553 original size:19 final size:20
Alignment explanation
Indices: 37558525--37558564 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
37558515 GTGACCCCTG
*
37558525 TTTTGCAAAA-TTTCCAGTT
1 TTTTGAAAAAGTTTCCAGTT
37558544 TTTTGAAAAAGTTTCCAGTT
1 TTTTGAAAAAGTTTCCAGTT
37558564 T
1 T
37558565 AGTCCTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTTGAAAAAGTTTCCAGTT
Found at i:37561196 original size:43 final size:39
Alignment explanation
Indices: 37561093--37561195 Score: 109
Period size: 40 Copynumber: 2.6 Consensus size: 39
37561083 GACCCGACCC
* * * * *
37561093 ATATTTGATTAAAAATAAAATATATTTTTTTAATATATA
1 ATATTTGATTAAAAATAAAAAATATATATTTAATAAAAA
*
37561132 AT-TTTGATTAAAATTCCAAAAAATATATATTTAATAAAAA
1 ATATTTGATTAAAAAT--AAAAAATATATATTTAATAAAAA
37561172 GTATATTTGATTAAAAATAAAAAA
1 --ATATTTGATTAAAAATAAAAAA
37561196 ACATTTAATA
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
38 12 0.23
39 2 0.04
40 18 0.35
41 6 0.12
42 2 0.04
43 12 0.23
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (39 bp):
ATATTTGATTAAAAATAAAAAATATATATTTAATAAAAA
Found at i:37585947 original size:88 final size:88
Alignment explanation
Indices: 37585766--37585945 Score: 206
Period size: 88 Copynumber: 2.1 Consensus size: 88
37585756 TAAGTCCTTG
* * *
37585766 TTTTTTCACTCAATTTGGTATTTGAACTTTCAAAATGCATAAAAAATACCTTCAAACTTTTTCAA
1 TTTTTTCACTCAATCTGGTATTTAAACTTTCAAAATGCATAAAAAAGACCTTCAAACTTTTTCAA
* **
37585831 AGAAAAGCAATTTAGCCCCTATC
66 AGAAAACCAATCAAGCCCCTATC
* * * *
37585854 TTTTTTGCACTCAA-CTGGTATTTAAACTTTCAAAATGTATATAAAGGGCTCTT-AAACTTTTTC
1 TTTTTT-CACTCAATCTGGTATTTAAACTTTCAAAATGCATAAAAAAGAC-CTTCAAACTTTTTC
* *
37585917 AAA-ATAACCAATCAAGCCCTTA-C
64 AAAGAAAACCAATCAAGCCCCTATC
37585940 TTTTTT
1 TTTTTT
37585946 TTTTACACTC
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
86 7 0.09
87 14 0.18
88 47 0.60
89 10 0.13
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.38
Consensus pattern (88 bp):
TTTTTTCACTCAATCTGGTATTTAAACTTTCAAAATGCATAAAAAAGACCTTCAAACTTTTTCAA
AGAAAACCAATCAAGCCCCTATC
Found at i:37586219 original size:10 final size:8
Alignment explanation
Indices: 37586127--37586212 Score: 51
Period size: 8 Copynumber: 11.2 Consensus size: 8
37586117 TCAATAGAAG
37586127 TTATAAAA
1 TTATAAAA
*
37586135 TTTATTAAA
1 -TTATAAAA
*
37586144 TT-T-TAA
1 TTATAAAA
37586150 TTA-AAAA
1 TTATAAAA
*
37586157 TATAAAAAA
1 T-TATAAAA
37586166 TTATAAAA
1 TTATAAAA
*
37586174 TATATAGAA
1 T-TATAAAA
*
37586183 -TATAGAA
1 TTATAAAA
37586190 --A-AAAA
1 TTATAAAA
37586195 TTATAAAA
1 TTATAAAA
37586203 TTATAAAA
1 TTATAAAA
37586211 TT
1 TT
37586213 TTATAAAGTC
Statistics
Matches: 63, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
5 3 0.05
6 5 0.08
7 12 0.19
8 25 0.40
9 18 0.29
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (8 bp):
TTATAAAA
Found at i:37586451 original size:13 final size:13
Alignment explanation
Indices: 37586435--37586460 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37586425 ACTTTAACAA
37586435 TTAATGGTTAAAG
1 TTAATGGTTAAAG
37586448 TTAATGGTTAAAG
1 TTAATGGTTAAAG
37586461 GACCTTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (13 bp):
TTAATGGTTAAAG
Found at i:37586489 original size:10 final size:10
Alignment explanation
Indices: 37586476--37586526 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
37586466 TTTTGATGCA
37586476 TTTTATAATT
1 TTTTATAATT
*
37586486 TTTTATGA-T
1 TTTTATAATT
**
37586495 TTTTATAAAA
1 TTTTATAATT
*
37586505 TTTTACAATTT
1 TTTTATAA-TT
37586516 TTTTATAATT
1 TTTTATAATT
37586526 T
1 T
37586527 CATACTATTT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
9 8 0.25
10 17 0.53
11 7 0.22
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (10 bp):
TTTTATAATT
Found at i:37586537 original size:40 final size:39
Alignment explanation
Indices: 37586476--37586557 Score: 103
Period size: 40 Copynumber: 2.1 Consensus size: 39
37586466 TTTTGATGCA
** *
37586476 TTTTATAATTTTTTATGATTTTTATAAAATTTTACAATTT
1 TTTTATAATTTCATATGATTTTTATAAAATTTT-CAAATT
*
37586516 TTTTATAATTTCATACT-ATTTTTATAATATTTTCAAATT
1 TTTTATAATTTCATA-TGATTTTTATAAAATTTTCAAATT
37586555 TTT
1 TTT
37586558 ATATTCTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 8 0.22
40 28 0.76
41 1 0.03
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (39 bp):
TTTTATAATTTCATATGATTTTTATAAAATTTTCAAATT
Found at i:37586547 original size:21 final size:19
Alignment explanation
Indices: 37586476--37586560 Score: 66
Period size: 19 Copynumber: 4.4 Consensus size: 19
37586466 TTTTGATGCA
* **
37586476 TTTTATAATTTTTTATGAT
1 TTTTATAATATTTTACAAT
*
37586495 TTTTATAAAATTTTACAATTT
1 TTTTATAATATTTTACAA--T
* *
37586516 TTTTATAAT-TTCATACTAT
1 TTTTATAATATT-TTACAAT
37586535 TTTTATAATATTTT-CAAAT
1 TTTTATAATATTTTAC-AAT
37586554 TTTTATA
1 TTTTATA
37586561 TTCTTTATAA
Statistics
Matches: 52, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
18 1 0.02
19 34 0.65
20 4 0.08
21 13 0.25
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (19 bp):
TTTTATAATATTTTACAAT
Found at i:37587013 original size:13 final size:13
Alignment explanation
Indices: 37586995--37587021 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37586985 AGTTCTTCAT
37586995 TACTTTTGAAAAG
1 TACTTTTGAAAAG
37587008 TACTTTTGAAAAG
1 TACTTTTGAAAAG
37587021 T
1 T
37587022 TTGGTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (13 bp):
TACTTTTGAAAAG
Found at i:37593637 original size:21 final size:20
Alignment explanation
Indices: 37593613--37593651 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
37593603 TAAAACTTCA
*
37593613 TAAAAATTATAAAGATATTTT
1 TAAAAAATATAAA-ATATTTT
37593634 TAAAAAATATAAAATATT
1 TAAAAAATATAAAATATT
37593652 AAAAAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
TAAAAAATATAAAATATTTT
Found at i:37593655 original size:17 final size:17
Alignment explanation
Indices: 37593632--37593671 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
37593622 TAAAGATATT
37593632 TTTAAAAAATATAA-AA
1 TTTAAAAAATATAATAA
*
37593648 TATTAAAAAATTTAATAA
1 T-TTAAAAAATATAATAA
37593666 TTTAAA
1 TTTAAA
37593672 TTTTTAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 17 0.81
18 3 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTTAAAAAATATAATAA
Found at i:37595845 original size:829 final size:829
Alignment explanation
Indices: 37594020--37600065 Score: 8660
Period size: 829 Copynumber: 7.3 Consensus size: 829
37594010 AGAGAGGAAT
* * *
37594020 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCACGTATCTTTAAGGACCCTGTTGAGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * *
37594085 GACAATTG-T--TG----C-TC-CC-TTCTTCACCTACGCTACGTACCTACTTTCCCTTTTGTCC
66 GACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
37594140 TTAATGCTCCTTTTCATTCTTTTTCATTTTATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
37594205 ATTGTGCGTTTGGC-TTTTTT-TTTAGTAAGGGGAGGAAGAAGTCTAAGCGCAGTGTTCAAGTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTT-GTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
37594268 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTA
** * * * * * *
37594333 ATGCAAAGGCACTGTATATATTATATCGAAGTGTTGACTAACAGAATAAATAAACCTTAACGGCT
325 ATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTTAACCTTAACGGCT
* * *
37594398 AACTACTTATATAGAGGACTATGATACAATTTGGAAACCGTATGAAATATTTACTTGAAAAGGCA
390 AACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCAT-AAATACTTACTTGAAAAGGCA
* * ** *
37594463 AGTATCTTTAAGGACCCTGTTGAGCAGACAATTGCTGCTCCCTTCTTTGCATTTCTTCACCTATG
454 AGTATCTCTAAGGACCCTGTTGAGCAGACAATTGCTGATCCCTTCTTCACCTTTCTTCACCTATG
* *
37594528 CTACGTGCCTTCTTTCCTTTTTGTCGTTAATGCTCATTTTCATTCTTTTTCATTTCATATCAGAT
519 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGAT
* *
37594593 ATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGAAGAAG
584 ATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG
* * * * * *
37594658 AAGTCTAAGCGCAATGTTGATGTTTATAACAAATAACAAAAAAAAAACATAAATGATACTTAAGA
649 AAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAAC--AAAGAAAACAGAAATGATACTTAAAA
*
37594723 AGAC-TTATTCATTAAGCCATTCTTTAATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGAC
712 AGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGAC
* *
37594787 TAACAGACTAACTTAACCTTAACGGCTAACTACTTATATAGAGGACTATGATA
777 TAACAGACTAACTGAACCTTAACGGCTCACTACTTATATAGAGGACTATGATA
*
37594840 CAATTTGGAAA-CTGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGT
1 CAATTTGGAAATC-GCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
* * * *
37594904 AGATAATTGCTGTTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTATTTCCTTTTTGTC
65 AGACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
*
37594969 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATCTTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
** * *
37595034 AATTGTGTGTTTTACGTTTTTTATTAGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* * *
37595099 ATAACAAATAACAAAGAAAAGAGAAATGAAACTTATGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTA
* * *
37595164 ATGCAAAGGCGTTGTACATATTGTATAGGAGTGTTGACTAATAGACTAACTTAACTTTAACGGCT
325 ATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTTAACCTTAACGGCT
* *
37595229 CACTACTTATAAAGAGGACTATGATACAATTTGGAAATCGCATAAATACTTACTTGAAAAGGCAA
390 AACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATAAATACTTACTTGAAAAGGCAA
37595294 GTATCTCTAAGGACCCTGTTGAG-AGGACAATTGCTGATCCCTTCTTCACCTTTCTTCACCTATG
455 GTATCTCTAAGGACCCTGTTGAGCA-GACAATTGCTGATCCCTTCTTCACCTTTCTTCACCTATG
* * *
37595358 CTATGTGCCTTCTTTCCTTTTTGTCCTTAATGCTAAC-TTTCATTCTTTTTCATTTTATATCAGA
519 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCT-CCTTTTCATTCTTTTTCATTTCATATCAGA
* * * * * *
37595422 TATTAGAGTTTTTGAACCCTAGTAATTATTGTGTATTTAGCGTTTTTTATTTGTAAGGAGAGGAA
583 TATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAA
* * * * * *
37595487 GAATTCTAAGCTTAGTGTTGTAGTTTATAACAAATAACAAAGAAAACAAAAATGAAACTTAAGAA
648 GAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACAGAAATGATACTTAAAAA
* *
37595552 GACTTTATTCA-TAAGGCAATTCTTTAATGCAAAGGCGCTGTGCATATTATATAGGAGTGTTGAC
713 GACTTTATTCATTAA-GCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGAC
* * * ** *
37595616 TAACAGACTAACTGAACCTTAACGGCTAACCACTTATATATAAAACTATGACA
777 TAACAGACTAACTGAACCTTAACGGCTCACTACTTATATAGAGGACTATGATA
* * * * * * * *
37595669 TAATTTGGAAATCACATTAAATATTTACATAAAAAGGCAAGTATATCTAAGGGCACTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
** *
37595734 GACAATTACTGCTGCCTTCTTCACCTTTCCTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
37595799 TTAATGCTCCTTTTCATTCTTTTTCATTCCATATCAAATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* *
37595864 ATTGTGTGTTTGGCATTTTTTGTCTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
*
37595929 TAACAAATAACAAAGAAAACATAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTAA
* ** * * * *
37595994 TGTAAAGGCACTGTACATATTTTATAGGAATGTTCACTAACAGACTAACTAAACCTTAACGGCTA
326 TGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTTAACCTTAACGGCTA
* * * * *
37596059 ACTACTTATATAGAGGACTATGATACAATTCGGAAATTGCATGAATTCTTTACTTGAAAATGCAA
391 ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATAAATAC-TTACTTGAAAAGGCAA
* * * *
37596124 GTATGTCTAAGGACCCTGTTGTGCAGATAATTGCT-ACTCTCTTCTTCACCTTT-TTCACCTATG
455 GTATCTCTAAGGACCCTGTTGAGCAGACAATTGCTGA-TCCCTTCTTCACCTTTCTTCACCTATG
* * * *
37596187 CTGCGTGCCTTCTTTCCTTTTTGTCATTATTGCTCCTTTTCATTCTTTTTCATTTCATATCAAAT
519 CTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGAT
* * * ** *
37596252 ATTAGAGCTTTTGACCCCTAGTGATAATTGTGCGTTTGGAATTTTTTGTTTGTAAGGGGAGGAAA
584 ATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG
* *
37596317 AAGTCTAACCGTAGTGTTGAAGTTTATAGCAAATAACAAAGAAAACAGAAATGATACTTAAAAAG
649 AAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACAGAAATGATACTTAAAAAG
*
37596382 ACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTCTACATATTATATAGGAGTGTTGACTA
714 ACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTA
*
37596447 ACAGACTAACTGAACCTTCACGGCTCACTACTTATATAGAGGACTATGATA
779 ACAGACTAACTGAACCTTAACGGCTCACTACTTATATAGAGGACTATGATA
* *
37596498 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCAAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* ** *
37596563 GACAATTGTTGTTGCCTTCTTCAAATTTCTTCACCTATGCTACGTGTCTTCTTTCCTTTTTGTCC
66 GACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
37596628 TTAATGCTACTTTTTATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTAATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
37596693 ATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGTGGAAGAAGTCTAAGCTTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* *
37596758 TCACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTCTTCATAAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTAA
*
37596823 TGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAA-TTGAACCTTAACGACT
326 TGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTT-AACCTTAACGGCT
* * * *
37596887 AACTACTTATATAAAGGACTATGGTATAATTTGGAAATCGCATGAATTACTTACTTGAAAAGG-A
390 AACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCAT-AAATACTTACTTGAAAAGGCA
* * * * * * *
37596951 ATGTATCTCTGATGACCCTGTTGTGCAAACAATTACTGCTCGCTTCTTCACCTTTCTTCACCTAT
454 A-GTATCTCTAAGGACCCTGTTGAGCAGACAATTGCTGATCCCTTCTTCACCTTTCTTCACCTAT
*
37597016 ACTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATAGT-AG
518 GCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATA-TCAG
* * *
37597080 GTATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGTGG-
582 ATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGA
* * * *
37597144 AGAAAGTCTAAGCGTAGTGTTGAATTTTATAA-AATATAAAAAAGAAAACATAAATTATACTTAA
647 AG-AAGTCTAAGCGTAGTGTTGAAGTTTATAACAA-ATAACAAAGAAAACAGAAATGATACTTAA
* * *
37597208 AAAGACTTTATCCATTAAGCCATTCTTTAATGCAAAGGCACTATACATATTATATAGGAGTGTTG
710 AAAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTG
* *
37597273 AGTAACAGACTAACTGAACCTTAACGGCTCACTACTTATATAAAGGACTATGATA
775 ACTAACAGACTAACTGAACCTTAACGGCTCACTACTTATATAGAGGACTATGATA
* *
37597328 CAATTTGGAAATCGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * * *
37597393 GACAATTTTTGCTCCCTTCTTTACCTTTCTTCACCTATGCTATGTCCCTACTTTCCTTTTTGTCC
66 GACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
37597458 TTAATGCTCCTATTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTAATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
37597523 ATTGTGTGTTTGGCATTTTTCGTTTGTAAGGGGAGGAGGAAGTCTAAGCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * *
37597588 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTAA
* * * *
37597653 TGCAAAGGCGTTGTACATATTGTATAGGAATGTTGACTAACAGACTAACCTAACCTTAACGGCTC
326 TGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTTAACCTTAACGGCTA
* *
37597718 ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATTAATATTTACTTGAAAAGGCAAG
391 ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATAAATACTTACTTGAAAAGGCAAG
*
37597783 TATCTCTAAAGACCCTGTTGAG-AGGACAATTGCTGATCCCTTCTTCACCTTTCTTCACCTATGC
456 TATCTCTAAGGACCCTGTTGAGCA-GACAATTGCTGATCCCTTCTTCACCTTTCTTCACCTATGC
* * * * * *
37597847 TACGTACATTCTTTCCTTTTTGTCCTTAATGCTAAC-TTCCATTCTTTTTCATTTTATATCACAT
520 TACGTGCCTTCTTTCCTTTTTGTCCTTAATGCT-CCTTTTCATTCTTTTTCATTTCATATCAGAT
* * * * * *
37597911 ATTAGAGTTTTTGAACTCC-AGTAATAATTGTGTATTTAGTGTTTTTTATTTGTAAGGAGAGGAA
584 ATTAGAGTTTTTGAAC-CCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAA
* * **
37597975 GAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAAGAGAAATGAAACTTATGAA
648 GAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACAGAAATGATACTTAAAAA
* *
37598040 GACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGTTGTACATATTGTATAGGAGTGTTGACT
713 GACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACT
* *
37598105 AACAGACTAACTTAACCTTAACGGCTCACTACTTATATAAAGGACTATGATA
778 AACAGACTAACTGAACCTTAACGGCTCACTACTTATATAGAGGACTATGATA
* * *
37598157 AAATATGGAAATGGCAT-AAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAG-A
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
** * * *
37598220 GGACAATTACTGCTACCTTCTTCACCTTTCTTCATCTATGCTACATGCCTTCTTTCCTTTTTGTC
66 -GACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * * *
37598285 CGTAATGCTCCTTTTCATTCATTTTCATTCCATATCAAATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
37598350 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
*
37598415 ATAACAAATAACAAAGAAAACATAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTA
* ** * * * *
37598480 ATGTAAAGGCACTGTACATATTTTATAGGAGTATTCACTAACAGACTAACTGAACCTTAACGGCT
325 ATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTTAACCTTAACGGCT
* * * *
37598545 AACTACTTATATAGAGAACTATGATACAATTTGGAAATTGCA-AGAATTCTTTACTTAAAAAGGC
390 AACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATA-AATAC-TTACTTGAAAAGGC
* * *
37598609 AAGTATATCTAAGGAACCTGTTGTGCAGACAATTGCT-ACTCCCTTCTTCACCTTTCTTCACCTA
453 AAGTATCTCTAAGGACCCTGTTGAGCAGACAATTGCTGA-TCCCTTCTTCACCTTTCTTCACCTA
* * *
37598673 TGCTACGTGCCTTCTTTCCTTTTTGTCATTATTGCTCCTTTTCATTCTTTTTCATTTCATATCAA
517 TGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAG
* * * * *
37598738 ATATTAGAGCTTTTGATCCCTAGTGATAATTGTGTGTTTGGCGTTTTTTCTTTGTATGGGTAGGA
582 ATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGA
* * *
37598803 AAAAGTCTAAGCGTAGTGTTGAAGTTTATAGCAAATAACAAAGAAAATAGAAATGATACTTAAAA
647 AGAAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACAGAAATGATACTTAAAA
37598868 AGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGAC
712 AGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGAC
* * *
37598933 TAACAGGCTAACTAAACCTTAACGGCTCATTACTTATATAGAGGACTATGATA
777 TAACAGACTAACTGAACCTTAACGGCTCACTACTTATATAGAGGACTATGATA
* * *
37598986 CAATTTAGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCAAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* **
37599051 GACAATTGTTGTTGCCTTCTTCA-AATTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
37599115 TTAATGCTACTTTTTATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACACTAGTAATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
37599180 ATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTGGAAAAAGTCTAAGCTTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* *
37599245 TAACAAATAACAAAGAAAACAAAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCATTAA
261 TAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTAA
* * *
37599310 TGCAAAGGCGTTGTACATATTATATTA-GAGTGTTAACTAACAGAGTAACTGAACCTTAACGGCT
326 TGCAAAGGCGTTGTACATATTATA-TAGGAGTGTTGACTAACAGACTAACTTAACCTTAACGGCT
* * * *
37599374 AACTACTTATATAAAAGACTATGACACAATTTGGAAATAGCATGAAATA-TTCACTT-AAAAGGG
390 AACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCAT-AAATACTT-ACTTGAAAA-GG
* * * * * * *
37599437 CAAGTCTCTCTAAGGGCCCTGTTGGGCAGACAATTGTTGCTCCCTTCTTCTCATTTCTTCACCTA
452 CAAGTATCTCTAAGGACCCTGTTGAGCAGACAATTGCTGATCCCTTCTTCACCTTTCTTCACCTA
* *
37599502 TGCTACGT-CCTTTTTTTCCTTTTTTTCCTTAATGCTCCTTTTCATTCTTTTTTCATTTCATATC
517 TGCTACGTGCC-TTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTC-TTTTTCATTTCATATC
* *
37599566 AGATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTG
580 AGATATTAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAG
* * * *
37599631 G-AGTAAGTCTAAGCGCAATGTTGAAGTTTATAAGAAATAACAAAGAAAATAGAAATGAT-CTTA
645 GAAG-AAGTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACAGAAATGATACTTA
* * * *
37599694 AAAAGACTTTATTCATTAGGCCATTCTTTAATGCAAAGGCACTGTACATATTATTTCGGAGTGTT
709 AAAAGACTTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTT
** * * *
37599759 GAAAAACAGACTAACTAAACCTTAACGGCTAACTACTTATATTGAGGACTATGATA
774 GACTAACAGACTAACTGAACCTTAACGGCTCACTACTTATATAGAGGACTATGATA
* * * *
37599815 CAATTTGGAAATCGCATGAACTATTTATTTGAAAATGG-AAGTATCTCTAAGGACCCTATTGGGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAA-GGCAAGTATCTCTAAGGACCCTGTTGAGC
* * * *
37599879 AGACAATTGTTGCTCCCTTCTACACCTGTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTGGTC
65 AGACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * * * * * * *
37599944 GTTAATGCTCATTTTCATTCTTTTCCATTTTATATCAGATATTAGAGTTTCTAAACCCAAGTGAC
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * * *
37600009 AATTGTGTGTTTGGCGTTTTTTGTTTTTCAGGGGAGGAAGAATTTTAAGCGCAGTGT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGT
37600066 ACATATTATA
Statistics
Matches: 4669, Mismatches: 498, Indels: 108
0.89 0.09 0.02
Matches are distributed among these distances:
819 1 0.00
820 68 0.01
821 1 0.00
823 2 0.00
827 2 0.00
828 431 0.09
829 2536 0.54
830 1423 0.30
831 203 0.04
832 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (829 bp):
CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
GACAATTGTTGCTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
TAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTAA
TGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTTAACCTTAACGGCTA
ACTACTTATATAGAGGACTATGATACAATTTGGAAATCGCATAAATACTTACTTGAAAAGGCAAG
TATCTCTAAGGACCCTGTTGAGCAGACAATTGCTGATCCCTTCTTCACCTTTCTTCACCTATGCT
ACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATAT
TAGAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAA
GTCTAAGCGTAGTGTTGAAGTTTATAACAAATAACAAAGAAAACAGAAATGATACTTAAAAAGAC
TTTATTCATTAAGCCATTCTTTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAAC
AGACTAACTGAACCTTAACGGCTCACTACTTATATAGAGGACTATGATA
Found at i:37595903 original size:415 final size:415
Alignment explanation
Indices: 37594020--37600065 Score: 8638
Period size: 415 Copynumber: 14.6 Consensus size: 415
37594010 AGAGAGGAAT
* * *
37594020 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCACGTATCTTTAAGGACCCTGTTGAGTA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * *
37594085 GACAATTGTTGCTCCCTTCTTCA-C---C-T-A-C---GCTACGTACCTACTTTCCCTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
37594140 TTAATGCTCCTTTTCATTCTTTTTCATTTTATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
37594205 ATTGTGCGTTTGGC-TTTTTT-TTTAGTAAGGGGAGGAAGAAGTCTAAGCGCAGTGTTCAAGTTT
196 ATTGTGTGTTTGGCGTTTTTTGTTT-GTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
*
37594268 ATAACAAATAACAAAGAAAACAGAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * * * * *
37594333 ATGCAAAGGCACTGTATATATTATATCGAAGTGTTGACTAACAGAATAAATAAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
37594398 AACTACTTATATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* * *
37594424 CAATTTGGAAACCGTATGAAATATTTACTTGAAAAGGCAAGTATCTTTAAGGACCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
** * *
37594489 GACAATTGCTGCTCCCTTCTTTGCATTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCG
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
*
37594554 TTAATGCTCATTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * * *
37594619 ATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGAAGAAGAAGTCTAAGCGCAATGTTGATGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * *
37594684 TAACAAATAACAAAAAAAAAACATAAATGATACTTAAGAAGAC-TTATTCATTAAGCCATTCTTT
261 TAACAAATAAC--AAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCTTT
* *
37594748 AATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTTAACCTTAACGGC
324 AATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGC
37594813 TAACTACTTATATAGAGGACTATGATA
389 TAACTACTTATATAGAGGACTATGATA
*
37594840 CAATTTGGAAA-CTGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGT
1 CAATTTGGAAATC-GCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGC
* * * *
37594904 AGATAATTGCTGTTGCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTATTTCCTTTTTGTC
65 AGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
*
37594969 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATCTTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
** * *
37595034 AATTGTGTGTTTTACGTTTTTTATTAGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
37595099 ATAACAAATAACAAAGAAAAGAGAAATGAAACTTATGAAGACTTTATTCATTAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * * *
37595164 ATGCAAAGGCGTTGTACATATTGTATAGGAGTGTTGACTAATAGACTAACTTAACTTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* *
37595229 CACTACTTATAAAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
*
37595255 CAATTTGGAAATCGCAT-AAATACTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAG-A
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
37595318 GGACAATTGCTGATCCCTTCTTCACCTTTCTTCACCTATGCTATGTGCCTTCTTTCCTTTTTGTC
66 -GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * *
37595383 CTTAATGCTAAC-TTTCATTCTTTTTCATTTTATATCAGATATTAGAGTTTTTGAACCCTAGTAA
130 CTTAATGCT-CCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGA
* * * * * * * *
37595447 TTATTGTGTATTTAGCGTTTTTTATTTGTAAGGAGAGGAAGAATTCTAAGCTTAGTGTTGTAGTT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTT
* *
37595512 TATAACAAATAACAAAGAAAACAAAAATGAAACTTAAGAAGACTTTATTCA-TAAGGCAATTCTT
259 TATAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAA-GCCATTCTT
*
37595576 TAATGCAAAGGCGCTGTGCATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
323 TAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
* * ** *
37595641 CTAACCACTTATATATAAAACTATGACA
388 CTAACTACTTATATAGAGGACTATGATA
* * * * * * * *
37595669 TAATTTGGAAATCACATTAAATATTTACATAAAAAGGCAAGTATATCTAAGGGCACTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
37595734 GACAATTACTGCTGCCTTCTTCACCTTTCCTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
37595799 TTAATGCTCCTTTTCATTCTTTTTCATTCCATATCAAATATTAGAGTTTTTGAACCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* *
37595864 ATTGTGTGTTTGGCATTTTTTGTCTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* *
37595929 TAACAAATAACAAAGAAAACATAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * * * * *
37595994 TGTAAAGGCACTGTACATATTTTATAGGAATGTTCACTAACAGACTAACTAAACCTTAACGGCTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
37596059 ACTACTTATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
* * * * * * *
37596084 CAATTCGGAAATTGCATGAATTCTTTACTTGAAAATGCAAGTATGTCTAAGGACCCTGTTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * * *
37596149 GATAATTGCTACTCTCTTCTTCACCTTT-TTCACCTATGCTGCGTGCCTTCTTTCCTTTTTGTCA
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
37596213 TTATTGCTCCTTTTCATTCTTTTTCATTTCATATCAAATATTAGAGCTTTTGACCCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* ** * *
37596278 ATTGTGCGTTTGGAATTTTTTGTTTGTAAGGGGAGGAAAAAGTCTAACCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * *
37596343 TAGCAAATAACAAAGAAAACAGAAATGATACTTAAAAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * *
37596408 TGCAAAGGCGCTCTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTCACGGCTC
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
37596473 ACTACTTATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
* *
37596498 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCAAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * ** *
37596563 GACAATTGTTGTTGCCTTCTTCAAATTTCTTCACCTATGCTACGTGTCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * *
37596628 TTAATGCTACTTTTTATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTAATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
37596693 ATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGTGGAAGAAGTCTAAGCTTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * *
37596758 TCACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTCTTCATAAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * *
37596823 TGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAACAGACTAATTGAACCTTAACGACTA
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
* *
37596888 ACTACTTATATAAAGGACTATGGTA
391 ACTACTTATATAGAGGACTATGATA
* * * * * *
37596913 TAATTTGGAAATCGCATGAATTACTTACTTGAAAAGG-AATGTATCTCTGATGACCCTGTTGTGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAA-GTATCTCTAAGGACCCTGTTGAGC
* * * *
37596977 AAACAATTACTGCTCGCTTCTTCACCTTTCTTCACCTATACTACGTGCCTTCTTTCCTTTTTGTC
65 AGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
*
37597042 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATAGT-AGGTATTAGAGTTTTTGAACCCTAGTGA
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATA-TCAGATATTAGAGTTTTTGAACCCTAGTGA
* * *
37597106 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAAGGGTGG-AGAAAGTCTAAGCGTAGTGTTGAATT
194 TAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG-AAGTCTAAGCGTAGTGTTGAAGT
* * * * * *
37597170 TTATAA-AATATAAAAAAGAAAACATAAATTATACTTAAAAAGACTTTATCCATTAAGCCATTCT
258 TTATAACAA-ATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCT
* * *
37597234 TTAATGCAAAGGCACTATACATATTATATAGGAGTGTTGAGTAACAGACTAACTGAACCTTAACG
322 TTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACG
* *
37597299 GCTCACTACTTATATAAAGGACTATGATA
387 GCTAACTACTTATATAGAGGACTATGATA
* *
37597328 CAATTTGGAAATCGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGGGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
** * * * *
37597393 GACAATTTTTGCTCCCTTCTTTACCTTTCTTCACCTATGCTATGTCCCTACTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* *
37597458 TTAATGCTCCTATTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTAATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * *
37597523 ATTGTGTGTTTGGCATTTTTCGTTTGTAAGGGGAGGAGGAAGTCTAAGCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* *
37597588 TAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * *
37597653 TGCAAAGGCGTTGTACATATTGTATAGGAATGTTGACTAACAGACTAACCT-AACCTTAACGGCT
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAA-CTGAACCTTAACGGCT
*
37597717 CACTACTTATATAGAGGACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* *
37597743 CAATTTGGAAATCGCAT-TAATATTTACTTGAAAAGGCAAGTATCTCTAAAGACCCTGTTGAG-A
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * *
37597806 GGACAATTGCTGATCCCTTCTTCACCTTTCTTCACCTATGCTACGTACATTCTTTCCTTTTTGTC
66 -GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * * * *
37597871 CTTAATGCTAAC-TTCCATTCTTTTTCATTTTATATCACATATTAGAGTTTTTGAACTCC-AGTA
130 CTTAATGCT-CCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAAC-CCTAGTG
* * * * *
37597934 ATAATTGTGTATTTAGTGTTTTTTATTTGTAAGGAGAGGAAGAAGTCTAAGCGTAGTGTTGAAGT
193 ATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGT
* *
37597999 TTATAACAAATAACAAAGAAAAGAGAAATGAAACTTATGAAGACTTTATTCATTAAGCCATTCTT
258 TTATAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCTT
* * *
37598064 TAATGCAAAGGCGTTGTACATATTGTATAGGAGTGTTGACTAACAGACTAACTTAACCTTAACGG
323 TAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGG
* *
37598129 CTCACTACTTATATAAAGGACTATGATA
388 CTAACTACTTATATAGAGGACTATGATA
* * *
37598157 AAATATGGAAATGGCAT-AAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAG-A
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * *
37598220 GGACAATTACTGCTACCTTCTTCACCTTTCTTCATCTATGCTACATGCCTTCTTTCCTTTTTGTC
66 -GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * * *
37598285 CGTAATGCTCCTTTTCATTCATTTTCATTCCATATCAAATATTAGAGTTTTTGAACCCTAGTGAT
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
37598350 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTT
* *
37598415 ATAACAAATAACAAAGAAAACATAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCTTTA
260 ATAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCTTTA
* * * * *
37598480 ATGTAAAGGCACTGTACATATTTTATAGGAGTATTCACTAACAGACTAACTGAACCTTAACGGCT
325 ATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
*
37598545 AACTACTTATATAGAGAACTATGATA
390 AACTACTTATATAGAGGACTATGATA
* * * * * * * *
37598571 CAATTTGGAAATTGCAAGAATTCTTTACTTAAAAAGGCAAGTATATCTAAGGAACCTGTTGTGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* *
37598636 GACAATTGCTACTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCA
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
37598701 TTATTGCTCCTTTTCATTCTTTTTCATTTCATATCAAATATTAGAGCTTTTGATCCCTAGTGATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
37598766 ATTGTGTGTTTGGCGTTTTTTCTTTGTATGGGTAGGAAAAAGTCTAAGCGTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * * *
37598831 TAGCAAATAACAAAGAAAATAGAAATGATACTTAAAAAGACTTTATTCATTAAGCCATTCTTTAA
261 TAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * *
37598896 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGGCTAACTAAACCTTAACGGCTC
326 TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
*
37598961 ATTACTTATATAGAGGACTATGATA
391 ACTACTTATATAGAGGACTATGATA
* * *
37598986 CAATTTAGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCAAAGGGCCCTGTTGAGCA
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
* * * **
37599051 GACAATTGTTGTTGCCTTCTTCA-AATTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
66 GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
* * * *
37599115 TTAATGCTACTTTTTATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACACTAGTAATA
131 TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
* * * *
37599180 ATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTGGAAAAAGTCTAAGCTTAGTGTTGAAGTTTA
196 ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
* * *
37599245 TAACAAATAACAAAGAAAACAAAAATGAAACTTAAGAAGACTTTATTCATAAAGCCATTCATTAA
261 TAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
* * *
37599310 TGCAAAGGCGTTGTACATATTATATTA-GAGTGTTAACTAACAGAGTAACTGAACCTTAACGGCT
326 TGCAAAGGCGCTGTACATATTATA-TAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCT
* * *
37599374 AACTACTTATATAAAAGACTATGACA
390 AACTACTTATATAGAGGACTATGATA
* * * * *
37599400 CAATTTGGAAATAGCATGAAATATTCACTT-AAAAGGGCAAGTCTCTCTAAGGGCCCTGTTGGGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAA-GGCAAGTATCTCTAAGGACCCTGTTGAGC
* * * * *
37599464 AGACAATTGTTGCTCCCTTCTTCTCATTTCTTCACCTATGCTACGT-CCTTTTTTTCCTTTTTTT
65 AGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCC-TTCTTTCCTTTTTGT
37599528 CCTTAATGCTCCTTTTCATTCTTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTG
129 CCTTAATGCTCCTTTTCATTC-TTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTG
* * * *
37599593 ATAATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTGG-AGTAAGTCTAAGCGCAATGTTGAAG
193 ATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG-AAGTCTAAGCGTAGTGTTGAAG
* * * * *
37599657 TTTATAAGAAATAACAAAGAAAATAGAAATG-ATCTTAAAAAGACTTTATTCATTAGGCCATTCT
257 TTTATAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCT
* * * ** *
37599721 TTAATGCAAAGGCACTGTACATATTATTTCGGAGTGTTGAAAAACAGACTAACTAAACCTTAACG
322 TTAATGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACG
*
37599786 GCTAACTACTTATATTGAGGACTATGATA
387 GCTAACTACTTATATAGAGGACTATGATA
* * * *
37599815 CAATTTGGAAATCGCATGAACTATTTATTTGAAAATGG-AAGTATCTCTAAGGACCCTATTGGGC
1 CAATTTGGAAATCGCATGAAATATTTACTTGAAAA-GGCAAGTATCTCTAAGGACCCTGTTGAGC
* * * *
37599879 AGACAATTGTTGCTCCCTTCTACACCTGTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTGGTC
65 AGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTC
* * * * * * * *
37599944 GTTAATGCTCATTTTCATTCTTTTCCATTTTATATCAGATATTAGAGTTTCTAAACCCAAGTGAC
130 CTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGAT
* * * * *
37600009 AATTGTGTGTTTGGCGTTTTTTGTTTTTCAGGGGAGGAAGAATTTTAAGCGCAGTGT
195 AATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGT
37600066 ACATATTATA
Statistics
Matches: 5045, Mismatches: 545, Indels: 94
0.89 0.10 0.02
Matches are distributed among these distances:
404 81 0.02
408 1 0.00
409 1 0.00
410 1 0.00
411 1 0.00
413 14 0.00
414 2062 0.41
415 2353 0.47
416 503 0.10
417 28 0.01
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (415 bp):
CAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAGGACCCTGTTGAGCA
GACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCC
TTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTTGAACCCTAGTGATA
ATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGTAGTGTTGAAGTTTA
TAACAAATAACAAAGAAAACAGAAATGAAACTTAAGAAGACTTTATTCATTAAGCCATTCTTTAA
TGCAAAGGCGCTGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTA
ACTACTTATATAGAGGACTATGATA
Found at i:37600342 original size:327 final size:326
Alignment explanation
Indices: 37599736--37600391 Score: 843
Period size: 327 Copynumber: 2.0 Consensus size: 326
37599726 GCAAAGGCAC
* * *
37599736 TGTACATATTATTTCGGAGTGTTGAAAAACAGACTAACTAAACCTTAACGGCTAACTACTTATAT
1 TGTACATATTATATAGGAGTGTTGAAAAACAGACTAACTAAACCTTAACGGCTAACTACTCATAT
** * * * * * *
37599801 TGAGGACTATGATACAATTTGGAAATCGCATGAACTATTTATTTGAAAATGGAAGTATCTCTAAG
66 TGAAAACTATGACACAATTTAGAAATCACATGAAATATTTACTTGAAAATGGAAGTACCTCTAAG
* ** *
37599866 GACCCTATTGGGCAGACAATTGTTGCTCCCTTCTACACCTGTCTTCACCTATGCTACGTGCCTTC
131 GACCCTATTGAGCAGACAATTACTGCTCCCTTCTACACCTGTCTTCACCTATGCTACATGCCTTC
* * * * *
37599931 TTTCCTTTTGGTCGTTAATGCTCATTTTCATTCTTTTCCATTTTATATCAGATATTAGAGTTTCT
196 TTTCCTTTTGGTCCTTAATGATCATTTTCATTATTTTCAATTTCATATCAGATATTAGAGTTTCT
* * * *
37599996 AAACCCAAGTGACAATTGTGTGTTTGGCGTTTTTTGTTT-TTCAGGGGAGGAAGAATTTTAAGCG
261 AAACCCAAGTGACAATTGTGTGTTTGGC-TTTTTT-TTTAGTAAGGGGAGGAAGAAGTCTAAGCG
37600060 CAG
324 CAG
** * * *
37600063 TGTACATATTATATAGGAGTGTTGACTAACAGATTAACTGAACCTTAACGGTTAACTACTCATAT
1 TGTACATATTATATAGGAGTGTTGAAAAACAGACTAACTAAACCTTAACGGCTAACTACTCATAT
*
37600128 AT-AAAACTATGACACAATTTAGAAATCACATTAAATATTTACTTGAAAA-GGTAAGTACCTCTA
66 -TGAAAACTATGACACAATTTAGAAATCACATGAAATATTTACTTGAAAATGG-AAGTACCTCTA
* * * * * * * *
37600191 AGGGCCCTGTTGAGTAGACAATTACTGTTGCCTTCTTCACCTTTCTTCACCTATGCTACATGTCT
129 AGGACCCTATTGAGCAGACAATTACTGCTCCCTTCTACACCTGTCTTCACCTATGCTACATGCCT
* *
37600256 TCTTTCCTTTTTGTCCTTAATGATCCTTTTCATTAATTTT-AATTTCATATCAGATATTAGAGTT
194 TCTTTCCTTTTGGTCCTTAATGATCATTTTCATT-ATTTTCAATTTCATATCAGATATTAGAGTT
* * * *
37600320 TTTGAACCCTAGTGATAATTGTGTGTTTGGCTTTTTTTTTAGTAAGGGGAGGAAGAAGTCTAAGC
258 TCTAAACCCAAGTGACAATTGTGTGTTTGGCTTTTTTTTTAGTAAGGGGAGGAAGAAGTCTAAGC
37600385 GCAG
323 GCAG
37600389 TGT
1 TGT
37600392 TCAAGTTTAT
Statistics
Matches: 281, Mismatches: 44, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
325 3 0.01
326 35 0.12
327 238 0.85
328 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (326 bp):
TGTACATATTATATAGGAGTGTTGAAAAACAGACTAACTAAACCTTAACGGCTAACTACTCATAT
TGAAAACTATGACACAATTTAGAAATCACATGAAATATTTACTTGAAAATGGAAGTACCTCTAAG
GACCCTATTGAGCAGACAATTACTGCTCCCTTCTACACCTGTCTTCACCTATGCTACATGCCTTC
TTTCCTTTTGGTCCTTAATGATCATTTTCATTATTTTCAATTTCATATCAGATATTAGAGTTTCT
AAACCCAAGTGACAATTGTGTGTTTGGCTTTTTTTTTAGTAAGGGGAGGAAGAAGTCTAAGCGCA
G
Found at i:37600758 original size:741 final size:742
Alignment explanation
Indices: 37599321--37600806 Score: 2204
Period size: 741 Copynumber: 2.0 Consensus size: 742
37599311 GCAAAGGCGT
*
37599321 TGTACATATTATATTAGAGTGTTAACTAACAGAGTAACTGAACCTTAACGGCTAACTACTTATAT
1 TGTACATATTATATTAGAGTGTTAACTAACAGAGTAACTGAACCTTAACGGCTAACTACTCATAT
*
37599386 AAAAGACTATGACACAATTTGGAAATAGCATGAAATATTCACTTAAAAGGGCAAGTCTCTCTAAG
66 AAAAGACTATGACACAATTTAGAAATAGCATGAAATATTCACTTAAAAGGGCAAGTCTCTCTAAG
* ** * *
37599451 GGCCCTGTTGGGCAGACAATTGTTGCTCCCTTCTTCTCATTTCTTCACCTATGCTACGTCCTTTT
131 GGCCCTGTTGAGCAGACAATTACTGCTCCCTTCTTCACATTTCTTCACCTATGCTACGTCCTTTC
* * ** *
37599516 TTTCCTTTTTTTCCTTAATGCTCCTTTTCATTCTTTTTTCATTTCATATCAGATATTAGAGTTTT
196 TTTCCTTTTTGTCCTTAATGATCCTTTTCATTCAATTTTAATTTCATATCAGATATTAGAGTTTT
*
37599581 TGAACCCTAGTGATAATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGTGGAGTAAGTCTAAGCG
261 TGAACCCTAGTGATAATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGAGGAGTAAGTCTAAGCG
* * *
37599646 CAATGTTGAAGTTTATAAGAAATAACAAAGAAAATAGAAATGATCTTAAAAAGACTTTATTCATT
326 CAATGTTCAAGTTTATAACAAATAACAAAGAAAACAGAAATGATCTTAAAAAGACTTTATTCATT
* * * *
37599711 AGGCCATTCTTTAATGCAAAGGCACTGTACATATTATTTCGGAGTGTTGAAAAACAGACTAACTA
391 AAGCCATTATTTAATGCAAAGGCACTGTACATATTATATAGGAGTGTTGAAAAACAGACTAACTA
* * *
37599776 AACCTTAACGGCTAACTACTTATATTGAGGACTATGATACAATTTGGAAATCGCATGAACTATTT
456 AACCTTAACGGCTAACTACTTATATAGAGGACTATGATACAATTTAGAAATCGCATGAAATATTT
* * * * *
37599841 ATTTGAAAATGGAAGTATCTCTAAGGACCCTATTGGGCAGACAATTGTTGCTCCCTTCTACACCT
521 ACTTGAAAATGCAAGTATCTCTAAGGACCCGATTGAGCAGACAATTGCTGCTCCCTTCTACACCT
* *
37599906 GTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTGGTCGTTAATGCTCATTTTCATTCTTTTCCA
586 GTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTGGTCCTTAATGCTAATTTTCATTCTTTTCCA
*
37599971 TTTTATATCAGATATTAGAGTTTCTAAACCCAAGTGACAATTGTGTGTTTGGCGTTTTTTGTTTT
651 TTTTATATCAGATATTAGAGTTTCTAAACCCAAGTGACAATTGTGTGTTTGGCGTTTTTTGTTTG
* * *
37600036 TCAGGGGAGGAAGAATTTTAAGCGCAG
716 TAAGGGGAGGAAGAATTTTAACCACAG
* * *
37600063 TGTACATATTATA-TAGGAGTGTTGACTAACAGATTAACTGAACCTTAACGGTTAACTACTCATA
1 TGTACATATTATATTA-GAGTGTTAACTAACAGAGTAACTGAACCTTAACGGCTAACTACTCATA
* * *
37600127 TATAAA-ACTATGACACAATTTAGAAATCA-CATTAAATATTTACTTGAAAA-GGTAAGTAC-CT
65 TA-AAAGACTATGACACAATTTAGAAAT-AGCATGAAATATTCACTT-AAAAGGGCAAGT-CTCT
* * * *
37600188 CTAAGGGCCCTGTTGAGTAGACAATTACTGTTGCCTTCTTCACCTTTCTTCACCTATGCTACATG
126 CTAAGGGCCCTGTTGAGCAGACAATTACTGCTCCCTTCTTCACATTTCTTCACCTATGCTAC--G
37600253 T-C-TTCTTTCCTTTTTGTCCTTAATGATCCTTTTCATT-AATTTTAATTTCATATCAGATATTA
189 TCCTTTCTTTCCTTTTTGTCCTTAATGATCCTTTTCATTCAATTTTAATTTCATATCAGATATTA
37600315 GAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGC-TTTTTT-TTTAGTAAGGGGAGGAAG-AA
254 GAGTTTTTGAACCCTAGTGATAATTGTGTGTTTGGCATTTTTTGTTT-GTAAGGGGAGG-AGTAA
* * * *
37600377 GTCTAAGCGCAGTGTTCAAGTTTATAACAAATAACAAAGAAAACAGAAATGGTACTTGAGAAGAC
317 GTCTAAGCGCAATGTTCAAGTTTATAACAAATAACAAAGAAAACAGAAATGAT-CTTAAAAAGAC
** **
37600442 TTTATTCATTAAGCCATTATTTAATGCAAAGGCGTTGTACATATTATATAGGAGTGTTGACTAAC
381 TTTATTCATTAAGCCATTATTTAATGCAAAGGCACTGTACATATTATATAGGAGTGTTGAAAAAC
* * * *
37600507 AGACTAACTGAACCTTCACGGCTCACTACTTATATAGAGGACTATGATGCAATTTAGAAATCGCA
446 AGACTAACTAAACCTTAACGGCTAACTACTTATATAGAGGACTATGATACAATTTAGAAATCGCA
*
37600572 TGAAATATTTACTTGAAAA-GACAAGTATCTCTAAGGACCCGGTTGAGCAGACAATTGCTGCTCC
511 TGAAATATTTACTTGAAAATG-CAAGTATCTCTAAGGACCCGATTGAGCAGACAATTGCTGCTCC
* * * *
37600636 CTTCTTCACTTTTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTTGTCCTTAATGCTAATTTTC
575 CTTCTACACCTGTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTGGTCCTTAATGCTAATTTTC
* * * *
37600701 ATTCTTTTCCATTTTATATCAGATATTAGAGTTTTTAAACCCTAGTGATACTTGTGTGTTTGGCG
640 ATTCTTTTCCATTTTATATCAGATATTAGAGTTTCTAAACCCAAGTGACAATTGTGTGTTTGGCG
37600766 TTTTTTGTTTGTAAGGGGAGGAAGAATTTTAACCACAG
705 TTTTTTGTTTGTAAGGGGAGGAAGAATTTTAACCACAG
37600804 TGT
1 TGT
37600807 TGAAGTTTAT
Statistics
Matches: 668, Mismatches: 65, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
739 3 0.00
740 67 0.10
741 399 0.60
742 187 0.28
743 10 0.01
744 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (742 bp):
TGTACATATTATATTAGAGTGTTAACTAACAGAGTAACTGAACCTTAACGGCTAACTACTCATAT
AAAAGACTATGACACAATTTAGAAATAGCATGAAATATTCACTTAAAAGGGCAAGTCTCTCTAAG
GGCCCTGTTGAGCAGACAATTACTGCTCCCTTCTTCACATTTCTTCACCTATGCTACGTCCTTTC
TTTCCTTTTTGTCCTTAATGATCCTTTTCATTCAATTTTAATTTCATATCAGATATTAGAGTTTT
TGAACCCTAGTGATAATTGTGTGTTTGGCATTTTTTGTTTGTAAGGGGAGGAGTAAGTCTAAGCG
CAATGTTCAAGTTTATAACAAATAACAAAGAAAACAGAAATGATCTTAAAAAGACTTTATTCATT
AAGCCATTATTTAATGCAAAGGCACTGTACATATTATATAGGAGTGTTGAAAAACAGACTAACTA
AACCTTAACGGCTAACTACTTATATAGAGGACTATGATACAATTTAGAAATCGCATGAAATATTT
ACTTGAAAATGCAAGTATCTCTAAGGACCCGATTGAGCAGACAATTGCTGCTCCCTTCTACACCT
GTCTTCACCTATGCTACGTGCCTTCTTTCCTTTTGGTCCTTAATGCTAATTTTCATTCTTTTCCA
TTTTATATCAGATATTAGAGTTTCTAAACCCAAGTGACAATTGTGTGTTTGGCGTTTTTTGTTTG
TAAGGGGAGGAAGAATTTTAACCACAG
Found at i:37601027 original size:416 final size:415
Alignment explanation
Indices: 37600063--37603770 Score: 5098
Period size: 416 Copynumber: 9.0 Consensus size: 415
37600053 TTAAGCGCAG
* * *
37600063 TGTACATATTATATAGGAGTGTTGACTAACAGATTAACTGAACCTTAACGGTTAACTACTCATAT
1 TGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATAT
* ** * * * * * *
37600128 ATAAAACTATGACACAATTTAGAAATCACATTAAATATTTACTTGAAAAGGTAAGTACCTCTAAG
66 AGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAG
* * * * * * *
37600193 GGCCCTGTTGAGTAGACAATTACTGTTGCCTTCTTCACCTTTCTTCACCTATGCTACATGTCTTC
131 GACCCTGTTGAGCAGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTC
* ** *
37600258 TTTCCTTTTTGTCCTTAATGATCCTTTTCATTAATTTTAATTTCATATCAGATATTAGAGTTTTT
196 TTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTT
37600323 GAACCCTAGTGATAATTGTGTGTTTGGC-TTTTTT-TTTAGTAAGGGGAGGAAGAAGTCTAAGCG
261 GAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTT-GTAAGGGGAGGAAGAAGTCTAAGCG
* * * * *
37600386 CAGTGTTCAAGTTTATAACAAATAACAAAGAAAACAGAAATGGTACTTGAGAAGACTTTATTCAT
325 TAGTGTTGAAGTTTATAACAAATAACAAAGAAAACAAAAATGATACTTAAGAAGACTTTATTCAT
* *
37600451 TAAGCCATTATTTAATGCAAAGGCGT
390 TAAGCCATTCTTTAATGCAAAGGCGC
* *
37600477 TGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTCACGGCTCACTACTTATAT
1 TGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATAT
* * *
37600542 AGAGGACTATGATGCAATTTAGAAATCGCATGAAATATTTACTTGAAAAGACAAGTATCTCTAAG
66 AGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAG
* *
37600607 GACCCGGTTGAGCAGACAATTGCTGCTCCCTTCTTCACTTTTCTTCACCTATGCTACGTGCCTTC
131 GACCCTGTTGAGCAGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTC
** * *
37600672 TTTCCTTTTTGTCCTTAATGCTAATTTTCATTCTTTTCCATTTTATATCAGATATTAGAGTTTTT
196 TTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTT
* * * * * **
37600737 AAACCCTAGTGATACTTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAATTTTAACCAC
261 GAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGT
* * * *
37600802 AGTGTTGAAGTTTATAACAAATAACAAAGAAAATAAAAAAAGATACTTAAAAAGACTTTCTTCAT
326 AGTGTTGAAGTTTATAACAAATAACAAAGAAAA-CAAAAATGATACTTAAGAAGACTTTATTCAT
*
37600867 TAAGTCATTCTTTAATGCAAAGGCGC
390 TAAGCCATTCTTTAATGCAAAGGCGC
*
37600893 TGTACATATTATATAGGAGTGTTGACTAACAGACTAATTGAACCTTAACGGCTAACTACTTATAT
1 TGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATAT
* * * * * * * *
37600958 AGAGGACTATGGTATAATTTGGAAATCACATGAATTATTTACTTGAAAAGGGATGCATCTCTGAG
66 AGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAG
* * *
37601023 GACCCTGTTGTGCAGACAATTGCTGCTCACTTCTTCACATTTCTTCACCTATGCTACGTGCCTTC
131 GACCCTGTTGAGCAGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTC
*
37601088 TTTCCTTTTT-TCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATTAGATATTAGAGTTTTT
196 TTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTT
* * *
37601152 GAACCCTAGTGATAATTGTGTGTTTGGCATTTTTTGATTGTAAGGGGTGG-AGAAAGTCTAAGCG
261 GAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG-AAGTCTAAGCG
* * * * * *
37601216 TAGTGTTGAAGTTTATAAAAAATAAAAAAGAAAACAGAAATAATACTTAAAAAGACTTTATCCAT
325 TAGTGTTGAAGTTTATAACAAATAACAAAGAAAACAAAAATGATACTTAAGAAGACTTTATTCAT
* *
37601281 TAAGCCATTCTTTAATGCAAAAGCAC
390 TAAGCCATTCTTTAATGCAAAGGCGC
* * * *
37601307 TCTACATATTATATAAGAGTGTTGAGTAACAGACTAACTGAACCTTAACGGCTCACTACTTATAT
1 TGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATAT
* * * *
37601372 -----A--ATGATACAATTTGGAAATCGTATAAAATATTTACTTGAAAAGGAAAGAATCTCTAAG
66 AGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAG
** * * * * * * *
37601430 GACGTTGTTGGGTAGCCAATTGTTGCTCCTTTCTTCACCTTTCTTCACCTATGCTACATGCCTTA
131 GACCCTGTTGAGCAGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTC
* *
37601495 TTTCCTTTTTGTCATTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATAAGAGTTTTT
196 TTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTT
* *
37601560 GAACCCTAGTGATAATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGAGGAGGAAGTCTAAGCGT
261 GAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGT
* * * *
37601625 AGTGTTGATGTTTATAAAAAATAACAAAGAAAACAAAAATGATATTTAATAAGACTTTATTCATT
326 AGTGTTGAAGTTTATAACAAATAACAAAGAAAACAAAAATGATACTTAAGAAGACTTTATTCATT
* *
37601690 AAGCCATTCATTAATGCAAAGGCGT
391 AAGCCATTCTTTAATGCAAAGGCGC
* * * * *
37601715 TGTACATATTATATAGGAGTGTTGAGTAATAGACTAACTGATCCTTAACAGCTCACTACTTATAT
1 TGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATAT
* *
37601780 AGAGGACTATGATACAATTTAGAAATCGTATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAG
66 AGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAG
* **
37601845 GACCCTGTTGGGCAGACAATTG-TGGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGACCCTT
131 GACCCTGTTGAGCAGACAATTGCT-GCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTT
* * * *
37601909 CATTCCTTTTTGTCCTTAATGGTCCTTTCCATTCTTTTTCATTTCATATCAGATATTAGATTTTT
195 CTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTT
37601974 TGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGG-AGAAAGTCTAAGC
260 TGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG-AAGTCTAAGC
* *
37602038 GTAGTGTTGAAGTTTATAACAAATAACAAAAAAAAACATAAATGATACTTAAGAAGACTTTATTC
324 GTAGTGTTGAAGTTTATAACAAATAAC-AAAGAAAACAAAAATGATACTTAAGAAGACTTTATTC
*
37602103 ATTAAGCCATTCATTAATGCAAAGGCGC
388 ATTAAGCCATTCTTTAATGCAAAGGCGC
* * *
37602131 TGTACATATTATATAGGAGTGTTGACTAACAGAGTAACTGAACCTTAATGGCTAACTACTTATAC
1 TGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATAT
* * * *
37602196 AAAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAGGGCAATTATCTATAAG
66 AGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAG
* * * * * * * *
37602261 GGCCCTGTTGGGTAGACAATTGGTTCTCCATTCTTCACCTTTCTTCACATATGCTACGTCCCTTC
131 GACCCTGTTGAGCAGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTC
* * * *
37602326 TTTCCTTTTTGTCCTTGATGCTCCTTTTTATTCCTTTTCATTTCATATCAAATATTAGAGTTTTT
196 TTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTT
* * *
37602391 GAACCCTAGTGATAATTATGTGTTTGGCGTTTCTTGTTTGTAAGGGGTGG-AGTAAGTCTAAGCG
261 GAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAG-AAGTCTAAGCG
* * * *
37602455 TAGTGTTGAAGTTTGTAAAAAAATAACAAAGAAAACATAAATGATACTTAAGAAGACTTTATTCC
325 TAGTGTTGAAGTTTAT-AACAAATAACAAAGAAAACAAAAATGATACTTAAGAAGACTTTATTCA
* *
37602520 TTAAGTCATTCATTAATGCAAAGGCGC
389 TTAAGCCATTCTTTAATGCAAAGGCGC
*** * * * * *
37602547 TGTACATATTATATTTTAGTGTTGACTTACAAAGTAAATGAACCTTAAGGGCTAACTACTTATAT
1 TGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATAT
* * * * * *
37602612 AAAGGACTATGATACAGTTTGGAAATCACATGAGATATTTACTTGAAAAAGAAAGTATCTCTAAG
66 AGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAG
* * * ** * *
37602677 GACCCTTTTGAGCAGATAATTGATGCAACCTTCTTCACCTTTTTTCACCTATGCTACATGCCTTC
131 GACCCTGTTGAGCAGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTC
*
37602742 TTTCCTTTTTGTCCTTAATGCTCATTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTT
196 TTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTT
* ** * *
37602807 GACCCCTAACGATAATTGTGTGTTTGGCGTTTTTTGTTAGTAA-GGCATGGAAGAAGTCTAAGCG
261 GAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGA-GGAAGAAGTCTAAGCG
* * * *
37602871 AAGTGTTGAAGTTTATAACAAATAACAAAAAAAAAATAGAAATGATACTTAAAAAGACTTTATTC
325 TAGTGTTGAAGTTTATAACAAATAACAAAGAAAACA-A-AAATGATACTTAAGAAGACTTTATTC
* * *
37602936 A-TAATCCATTCTTTAATGCAAAAGCAC
388 ATTAAGCCATTCTTTAATGCAAAGGCGC
* * * *
37602963 TATACATATTATATCGGAGTGTTGACTAACAGACTAACTGAACCTTAACGACTCACTACTTATAT
1 TGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATAT
* * *
37603028 AGAGGACTATGACACAATTTCGAAATCACATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAG
66 AGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAG
* * *
37603093 GACCCTGTTGGGCAGACAATTGCTGCTCCATTCTTCACATTTCTTCACCTATGCTACGTGCCTTC
131 GACCCTGTTGAGCAGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTC
* * * *
37603158 TTTCCATTTTATCCTTAATGCTCCTTTTCATTCTTTTTAATTTCATATCAGACATTAGAGTTTTT
196 TTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTT
* * * * *
37603223 GAACCCTAGTGATAATTGTGTGTTTAGCATTTTTTGTTTGTAAAGGGAGGAGGAAGTTTAAGCGT
261 GAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGT
*
37603288 AGTGTTGAAGTTTATAACAAATAACAAAGAAAACATAAATGATACTTAAGAAGAC--T-TT-ATT
326 AGTGTTGAAGTTTATAACAAATAACAAAGAAAACAAAAATGATACTTAAGAAGACTTTATTCATT
37603349 ----CA----TTAATGCAAAGGCGC
391 AAGCCATTCTTTAATGCAAAGGCGC
* *
37603366 TGTACATATTATATAAGG-GTGTTGACTAACAGACTAACTGAACCTTAATGTCTAACTACTTATA
1 TGTACATATTATAT-AGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATA
* * * *
37603430 TAGAGGACTATGATACAATTCGAAAATCGCATGAAATTTTTACTTAAAAAGGCAAGTATCTCTAA
65 TAGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAA
* * *
37603495 GGACCCTGTTGAGTAGACAATTGCTGCTCTCTTCTTCACCTTTCTTCACCTATGCTACGTACCTT
130 GGACCCTGTTGAGCAGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTT
* * * * *
37603560 CTTTCTTTTTTGTCCTTGATGCTCCTTTTTATTCCTTTTCATTTCATATCAAATATTAGAGTTTT
195 CTTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTT
* *
37603625 TAAACCCTAGTGATAATTGTGTGTTTGGTGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCG
260 TGAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCG
* * * *
37603690 CAGTGTTGATGTTTATAACAAATAACAAAGAAAACATAAATGATACTTTAGAAGACTTTATTCAT
325 TAGTGTTGAAGTTTATAACAAATAACAAAGAAAACAAAAATGATACTTAAGAAGACTTTATTCAT
37603755 TAAGCCATTCTTTAAT
390 TAAGCCATTCTTTAAT
37603771 AACCAAAATA
Statistics
Matches: 2907, Mismatches: 350, Indels: 73
0.87 0.11 0.02
Matches are distributed among these distances:
403 353 0.12
404 2 0.00
405 1 0.00
406 2 0.00
407 116 0.04
408 248 0.09
409 2 0.00
410 1 0.00
411 5 0.00
412 1 0.00
413 1 0.00
414 384 0.13
415 466 0.16
416 1285 0.44
417 40 0.01
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (415 bp):
TGTACATATTATATAGGAGTGTTGACTAACAGACTAACTGAACCTTAACGGCTAACTACTTATAT
AGAGGACTATGATACAATTTGGAAATCGCATGAAATATTTACTTGAAAAGGCAAGTATCTCTAAG
GACCCTGTTGAGCAGACAATTGCTGCTCCCTTCTTCACCTTTCTTCACCTATGCTACGTGCCTTC
TTTCCTTTTTGTCCTTAATGCTCCTTTTCATTCTTTTTCATTTCATATCAGATATTAGAGTTTTT
GAACCCTAGTGATAATTGTGTGTTTGGCGTTTTTTGTTTGTAAGGGGAGGAAGAAGTCTAAGCGT
AGTGTTGAAGTTTATAACAAATAACAAAGAAAACAAAAATGATACTTAAGAAGACTTTATTCATT
AAGCCATTCTTTAATGCAAAGGCGC
Found at i:37607516 original size:17 final size:18
Alignment explanation
Indices: 37607454--37607519 Score: 73
Period size: 18 Copynumber: 3.8 Consensus size: 18
37607444 CGATTATACT
* *
37607454 TGAT-AAATTATAAAGCC
1 TGATAAAATGATAATGCC
* *
37607471 TGATAAAACGATAATGTC
1 TGATAAAATGATAATGCC
*
37607489 TGATAAAATGACAATGCC
1 TGATAAAATGATAATGCC
37607507 TGAT-AAATGATAA
1 TGATAAAATGATAA
37607520 ATTATAAATG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
17 12 0.30
18 28 0.70
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.27
Consensus pattern (18 bp):
TGATAAAATGATAATGCC
Found at i:37608681 original size:51 final size:51
Alignment explanation
Indices: 37608605--37608816 Score: 312
Period size: 51 Copynumber: 4.3 Consensus size: 51
37608595 CGGATCACAT
* *
37608605 TTATCACTTGTCACTTATCCCTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
*
37608656 TTATCACTTGTTACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
37608707 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCA-
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* * *
37608757 TT-T-A----TCACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACTAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
*
37608802 TTATCACTTATCACT
1 TTATCACTTGTCACT
37608817 GATCAGAAGT
Statistics
Matches: 147, Mismatches: 7, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
44 37 0.25
45 2 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 1 0.01
50 2 0.01
51 102 0.69
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:37608716 original size:44 final size:44
Alignment explanation
Indices: 37608668--37608823 Score: 204
Period size: 44 Copynumber: 3.4 Consensus size: 44
37608658 ATCACTTGTT
37608668 ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTC
1 ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC-T-T-A----TC
*
37608719 ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCATTTATC
1 ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATC
* * *
37608763 ACTTGTCACTGATCAGATAAGTGCAACTAAAGCTACTACTTATC
1 ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATC
*
37608807 ACTTATCACTGATCAGA
1 ACTTGTCACTGATCAGA
37608824 AGTACTCAAA
Statistics
Matches: 99, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
44 58 0.59
48 1 0.01
49 1 0.01
50 1 0.01
51 38 0.38
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (44 bp):
ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATC
Found at i:37608721 original size:102 final size:95
Alignment explanation
Indices: 37608605--37608821 Score: 299
Period size: 95 Copynumber: 2.2 Consensus size: 95
37608595 CGGATCACAT
* *
37608605 TTATCACTTGTCACTTATCCCTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTTAC
1 TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCA-TT-T-A----TCAC
* *
37608670 TTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
59 TTGTCACTGATCAGATAAGTGCAACTAAAGCTACCAC
*
37608707 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCATTTATCACTTGTCAC
1 TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCATTTATCACTTGTCAC
*
37608772 TGATCAGATAAGTGCAACTAAAGCTACTAC
66 TGATCAGATAAGTGCAACTAAAGCTACCAC
* *
37608802 TTATCACTTATCACTGATCA
1 TTATCACTTGTCACTTATCA
37608822 GAAGTACTCA
Statistics
Matches: 106, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
95 54 0.51
99 1 0.01
100 1 0.01
101 2 0.02
102 48 0.45
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (95 bp):
TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCATTTATCACTTGTCAC
TGATCAGATAAGTGCAACTAAAGCTACCAC
Found at i:37610948 original size:21 final size:21
Alignment explanation
Indices: 37610924--37610965 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37610914 CTTTTTGTTC
*
37610924 AATTAATTATCGAAACTTTAA
1 AATTAATTAACGAAACTTTAA
**
37610945 AATTTTTTAACGAAACTTTAA
1 AATTAATTAACGAAACTTTAA
37610966 TAATAACTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (21 bp):
AATTAATTAACGAAACTTTAA
Found at i:37611627 original size:54 final size:53
Alignment explanation
Indices: 37611506--37611648 Score: 169
Period size: 54 Copynumber: 2.7 Consensus size: 53
37611496 TAGCTAGATT
* *
37611506 ACTGACTTGGTCACACGGCCAGTTACACGCCCGTGTTCCAGCCCGTGTAACTC
1 ACTGACTTGGCCACACGGCCAGTCACACGCCCGTGTTCCAGCCCGTGTAACTC
* ** * *
37611559 TCTGACTTAACCACACGGCCAGTCACACGTCTGTGTGTCCAGCCCGTGTAACTC
1 ACTGACTTGGCCACACGGCCAGTCACACGCCCGTGT-TCCAGCCCGTGTAACTC
* * * * *
37611613 ACTGTCTTGGCCACATGGCCTGCCACATGCCCGTGT
1 ACTGACTTGGCCACACGGCCAGTCACACGCCCGTGT
37611649 GTGAGACCAT
Statistics
Matches: 72, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
53 29 0.40
54 43 0.60
ACGTcount: A:0.18, C:0.36, G:0.22, T:0.24
Consensus pattern (53 bp):
ACTGACTTGGCCACACGGCCAGTCACACGCCCGTGTTCCAGCCCGTGTAACTC
Found at i:37612890 original size:43 final size:43
Alignment explanation
Indices: 37612843--37612974 Score: 151
Period size: 43 Copynumber: 3.1 Consensus size: 43
37612833 CTTACGTGTT
* * *
37612843 ATCATATATCGATGCCACTATCCAAGACAAGGTCTTACACGAA
1 ATCATATATCGATGCCAATGTCCAAGACATGGTCTTACACGAA
* * *
37612886 ATCATATAT-GATTCCAATGTCCTAGACATGGTCTTACACGTA
1 ATCATATATCGATGCCAATGTCCAAGACATGGTCTTACACGAA
* * * *
37612928 ATC-TCTAATCGATGTCAATGTCCCAGACATGGTCTTACACGAT
1 ATCATAT-ATCGATGCCAATGTCCAAGACATGGTCTTACACGAA
37612971 ATCA
1 ATCA
37612975 CACATCGGAA
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
41 2 0.03
42 32 0.43
43 40 0.54
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (43 bp):
ATCATATATCGATGCCAATGTCCAAGACATGGTCTTACACGAA
Found at i:37614982 original size:21 final size:21
Alignment explanation
Indices: 37614936--37614976 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
37614926 AATATTGTGT
* *
37614936 AATTTTTTTGCAATTTTAGTA
1 AATTTTTGTGCAATTTTAATA
37614957 AATTTTTGTGCAATTTTAAT
1 AATTTTTGTGCAATTTTAAT
37614977 GCATTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.56
Consensus pattern (21 bp):
AATTTTTGTGCAATTTTAATA
Found at i:37619147 original size:105 final size:105
Alignment explanation
Indices: 37619033--37619266 Score: 348
Period size: 106 Copynumber: 2.2 Consensus size: 105
37619023 CGGCATCAGA
**
37619033 ATACGAAAAAAGTAAAAAAAATTTGGTGGTGGTCTGCCAATTG-CCGGCACCACCTTTAT-T-AG
1 ATACGAAAAAAGTAAAAAAAATTTGGTGGTGACCTGCCAA-TGACCGGCACCACCTTTATGTGAG
*
37619095 AAATTTTTTTTTACTTTTTTCGTGTCAATGGCAGACACCAGT
65 -AATTTTTTTTTACTTTTTTCGTGTCAATGGAAGACACCAGT
*
37619137 ATACGAAAAAAGTAAAAAAAAAATTGGTGGTGACCTGCCAATGACCGGCACCACCTTTATGTGAG
1 ATACGAAAAAAGT-AAAAAAAATTTGGTGGTGACCTGCCAATGACCGGCACCACCTTTATGTGAG
* *
37619202 AATTTTTTTTTACTTTTTTTGTGTCAATGGAAGGCACCAGT
65 AATTTTTTTTTACTTTTTTCGTGTCAATGGAAGACACCAGT
*
37619243 ATAAGAAAAAAAGTAAAAAAAATT
1 ATACG-AAAAAAGTAAAAAAAATT
37619267 CATATACTGA
Statistics
Matches: 117, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
104 15 0.13
105 40 0.34
106 52 0.44
107 10 0.09
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (105 bp):
ATACGAAAAAAGTAAAAAAAATTTGGTGGTGACCTGCCAATGACCGGCACCACCTTTATGTGAGA
ATTTTTTTTTACTTTTTTCGTGTCAATGGAAGACACCAGT
Found at i:37620173 original size:110 final size:106
Alignment explanation
Indices: 37620048--37620391 Score: 308
Period size: 110 Copynumber: 3.2 Consensus size: 106
37620038 ACGAAAAAAG
* *
37620048 TTTTTTACTTTTTTCGTATACTGGTGCCGGCCATTGACAGACCAAAAGTAAAAAAAAAAACAATT
1 TTTTTTACTTTTTTCGTATACTGGTGCCTGCCATTGACAGACAAAAAGTAAAAAAAAAAA-AATT
*
37620113 TGGAAAAAGGTGGTGCTGGCCATTGGCAGGCTACCACCAAAATT
65 T-CAAAAAGGTGGTGCTGGCCATTGGCAGGCTACCA-CAAAATT
* * *
37620157 TTTTTTAACTTTTTTCGTATAGTAGTGCCTGCCATTGAGACGA-AAAAAGT----AAAAAAAAAT
1 TTTTTT-ACTTTTTTCGTATACTGGTGCCTGCCATTGACA-GACAAAAAGTAAAAAAAAAAAAAT
**
37620217 TTCATAAAA-GTGGTGCTGGCCATTGGCAGG-TCACCACAAAAAA
64 TTCA-AAAAGGTGGTGCTGGCCATTGGCAGGCT-ACCACAAAATT
*** * * ****
37620260 AACTTTACTTTTTTCGTATACTGGTGCCTGACATTGACTCGA-AAAAAGTAAAAAAAAACTTTTT
1 TTTTTTACTTTTTTCGTATACTGGTGCCTGCCATTGAC-AGACAAAAAGTAAAAAAAAA--AAAA
* * *
37620324 TTTCCAATAAAGGTGGTGCCGGCCATTGGCAGGCCACCATCAAATTTTT
63 TTT-CAA-AAAGGTGGTGCTGGCCATTGGCAGGCTACCA-CAAA--ATT
*
37620373 TTTTTTACATTTTTCGTAT
1 TTTTTTACTTTTTTCGTAT
37620392 TCTTGTCCCT
Statistics
Matches: 188, Mismatches: 29, Indels: 32
0.76 0.12 0.13
Matches are distributed among these distances:
102 37 0.20
103 9 0.05
104 26 0.14
105 9 0.05
106 12 0.06
108 4 0.02
109 11 0.06
110 59 0.31
111 6 0.03
113 15 0.08
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (106 bp):
TTTTTTACTTTTTTCGTATACTGGTGCCTGCCATTGACAGACAAAAAGTAAAAAAAAAAAAATTT
CAAAAAGGTGGTGCTGGCCATTGGCAGGCTACCACAAAATT
Found at i:37624139 original size:2 final size:2
Alignment explanation
Indices: 37624060--37624122 Score: 117
Period size: 2 Copynumber: 31.5 Consensus size: 2
37624050 AAATATGCAA
37624060 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
37624102 AT AT AT AT AT TT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A
37624123 ATGTTTAAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:37624334 original size:10 final size:9
Alignment explanation
Indices: 37624316--37624373 Score: 61
Period size: 10 Copynumber: 6.7 Consensus size: 9
37624306 ATGGAAAATG
37624316 TATAAATAT
1 TATAAATAT
37624325 TATAAA-A-
1 TATAAATAT
37624332 TATAAATAT
1 TATAAATAT
37624341 TATAAA-A-
1 TATAAATAT
37624348 TATAAATAT
1 TATAAATAT
*
37624357 ATATACATAT
1 -TATAAATAT
37624367 ATATAAA
1 -TATAAA
37624374 AACTATGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
7 12 0.29
8 4 0.10
9 12 0.29
10 14 0.33
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (9 bp):
TATAAATAT
Found at i:37624337 original size:7 final size:8
Alignment explanation
Indices: 37624311--37624369 Score: 59
Period size: 9 Copynumber: 7.1 Consensus size: 8
37624301 AAAATATGGA
*
37624311 AAATGTAT
1 AAATATAT
37624319 AAATATTAT
1 AAATA-TAT
37624328 AAA-ATAT
1 AAATATAT
37624335 AAATATTAT
1 AAATA-TAT
37624344 AAA-ATAT
1 AAATATAT
37624351 AAATATAT
1 AAATATAT
37624359 ATACATATAT
1 A-A-ATATAT
37624369 A
1 A
37624370 TAAAAACTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
7 12 0.27
8 12 0.27
9 13 0.30
10 7 0.16
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (8 bp):
AAATATAT
Found at i:37624367 original size:16 final size:16
Alignment explanation
Indices: 37624316--37624361 Score: 83
Period size: 16 Copynumber: 2.8 Consensus size: 16
37624306 ATGGAAAATG
37624316 TATAAATATTATAAAA
1 TATAAATATTATAAAA
37624332 TATAAATATTATAAAA
1 TATAAATATTATAAAA
37624348 TATAAATATATATA
1 TATAAATAT-TATA
37624362 CATATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 25 0.86
17 4 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TATAAATATTATAAAA
Found at i:37624495 original size:3 final size:3
Alignment explanation
Indices: 37624487--37624546 Score: 61
Period size: 3 Copynumber: 20.3 Consensus size: 3
37624477 ATATGTAGGT
* * *
37624487 ATA ATA ATA ATA ATA ATGT ATA AT- ATA ATA AAA ATA ATA ATA ACA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
37624532 ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA A
37624547 ACTAAACTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
2 4 0.09
3 40 0.87
4 2 0.04
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:37624539 original size:24 final size:24
Alignment explanation
Indices: 37624486--37624543 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
37624476 TATATGTAGG
* * *
37624486 TATAATAATAATAATAATGTATAA
1 TATAATAAAAATAATAATGAACAA
37624510 TATAATAAAAATAATAAT-AACAA
1 TATAATAAAAATAATAATGAACAA
37624533 TATTAATAAAA
1 TA-TAATAAAA
37624544 TAAACTAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 5 0.17
24 25 0.83
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (24 bp):
TATAATAAAAATAATAATGAACAA
Found at i:37625966 original size:23 final size:23
Alignment explanation
Indices: 37625921--37625975 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 23
37625911 GCATGTCAAA
*
37625921 ATTTAGTACTTTAATAAATAATA-
1 ATTTATTA-TTTAATAAATAATAT
37625944 ATTATATTATTTAA-AAATAAATAT
1 ATT-TATTATTTAATAAAT-AATAT
37625968 ATTTATTA
1 ATTTATTA
37625976 AAGAAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
22 4 0.14
23 17 0.61
24 7 0.25
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTTATTATTTAATAAATAATAT
Found at i:37625976 original size:19 final size:20
Alignment explanation
Indices: 37625930--37625977 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
37625920 AATTTAGTAC
* *
37625930 TTTAATAAATAATAATTATA
1 TTTATTAAATAATAAATATA
37625950 -TTATTTAAA-AATAAATATA
1 TTTA-TTAAATAATAAATATA
37625969 TTTATTAAA
1 TTTATTAAA
37625978 GAAATTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTATTAAATAATAAATATA
Found at i:37627661 original size:15 final size:15
Alignment explanation
Indices: 37627641--37627674 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
37627631 ATACTTTTGC
*
37627641 ATTTTTATTATTTAT
1 ATTTTTATTATTTAA
37627656 ATTTTTATTATTTAA
1 ATTTTTATTATTTAA
37627671 ATTT
1 ATTT
37627675 CTACTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
ATTTTTATTATTTAA
Found at i:37628792 original size:110 final size:110
Alignment explanation
Indices: 37628599--37628815 Score: 389
Period size: 110 Copynumber: 2.0 Consensus size: 110
37628589 GAAATTCAAG
37628599 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTCTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTCTCTC
* *
37628664 GAATTTCTCAAACGCAAAACATTGCCTTATTTTAAAATTTTTAAA
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAA
* * *
37628709 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTTTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTCTCTC
37628774 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTT
66 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTT
37628816 GTTTTTGATA
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
110 102 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (110 bp):
AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTCTCTC
GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAA
Found at i:37628954 original size:18 final size:17
Alignment explanation
Indices: 37628923--37628958 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
37628913 ATATATAATG
*
37628923 AAAAGAAATCAACAAAT
1 AAAAGAAATAAACAAAT
37628940 AAAAGTAAATAAACAAAT
1 AAAAG-AAATAAACAAAT
37628958 A
1 A
37628959 TAAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.72, C:0.08, G:0.06, T:0.14
Consensus pattern (17 bp):
AAAAGAAATAAACAAAT
Found at i:37629329 original size:25 final size:24
Alignment explanation
Indices: 37629285--37629335 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
37629275 TGTGTGTAAG
*
37629285 TATATATAAAAAAATATATATGTA
1 TATATATAAAAAAATATATATATA
**
37629309 TATATATAAAAAAA-ACGTATATA
1 TATATATAAAAAAATATATATATA
37629332 TATA
1 TATA
37629336 AGGGCAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (24 bp):
TATATATAAAAAAATATATATATA
Found at i:37629360 original size:3 final size:3
Alignment explanation
Indices: 37629345--37629374 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
37629335 AAGGGCAATT
*
37629345 ATA ATA ATG ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
37629375 TTATTATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:37629722 original size:23 final size:23
Alignment explanation
Indices: 37629677--37629731 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 23
37629667 GCATGTCAAA
*
37629677 ATTTAGTACTTTAATAAATAATA-
1 ATTTATTA-TTTAATAAATAATAT
37629700 ATTATATTATTTAA-AAATAAATAT
1 ATT-TATTATTTAATAAAT-AATAT
37629724 ATTTATTA
1 ATTTATTA
37629732 AAGAAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
22 4 0.14
23 17 0.61
24 7 0.25
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTTATTATTTAATAAATAATAT
Found at i:37629732 original size:19 final size:20
Alignment explanation
Indices: 37629686--37629733 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
37629676 AATTTAGTAC
* *
37629686 TTTAATAAATAATAATTATA
1 TTTATTAAATAATAAATATA
37629706 -TTATTTAAA-AATAAATATA
1 TTTA-TTAAATAATAAATATA
37629725 TTTATTAAA
1 TTTATTAAA
37629734 GAAATTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTATTAAATAATAAATATA
Found at i:37630403 original size:43 final size:44
Alignment explanation
Indices: 37630311--37630429 Score: 127
Period size: 44 Copynumber: 2.7 Consensus size: 44
37630301 CCACCAGTAA
* * *
37630311 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAT
1 CTTCAACCTGCGCCACTGCAACTTCAGGGAGATAAGATTTCTAT
* *
37630355 CTTCAACTTGCGCCACTG-AACTTCATGGG-GATAAGGTTTTCTAT
1 CTTCAACCTGCGCCACTGCAACTTCA-GGGAGATAA-GATTTCTAT
* * *
37630399 -TTCAACCTGCTCTACTGCAACTTCAGAGAGA
1 CTTCAACCTGCGCCACTGCAACTTCAGGGAGA
37630430 CGAGATCTGT
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
43 28 0.45
44 34 0.55
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
CTTCAACCTGCGCCACTGCAACTTCAGGGAGATAAGATTTCTAT
Found at i:37631337 original size:18 final size:18
Alignment explanation
Indices: 37631299--37631338 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37631289 GGTATAGTTT
* *
37631299 TTTATTTATTTATTATTA
1 TTTATTTATTTATAATCA
*
37631317 TTTATTTGTTTATAATCA
1 TTTATTTATTTATAATCA
37631335 TTTA
1 TTTA
37631339 ACCGAATACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTATTTATTTATAATCA
Found at i:37632305 original size:20 final size:21
Alignment explanation
Indices: 37632275--37632321 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
37632265 TTGATATACC
37632275 AAAAGTAAAAAAAAATTGAGA
1 AAAAGTAAAAAAAAATTGAGA
*
37632296 AAAAGTAAAAAAAAATTGGGA
1 AAAAGTAAAAAAAAATTGAGA
37632317 AAAAG
1 AAAAG
37632322 GTGGTGCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.70, C:0.00, G:0.17, T:0.13
Consensus pattern (21 bp):
AAAAGTAAAAAAAAATTGAGA
Found at i:37632877 original size:23 final size:23
Alignment explanation
Indices: 37632850--37632905 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
37632840 ATAATTTCTT
37632850 TAATAAATATATTTATTT-TTAAA-
1 TAATAAAT-TA-TTATTTATTAAAG
37632873 TAATATAATTATTATTTATTAAAG
1 TAATA-AATTATTATTTATTAAAG
*
37632897 TACTAAATT
1 TAATAAATT
37632906 TTGACATGCG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
22 6 0.21
23 16 0.55
24 7 0.24
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (23 bp):
TAATAAATTATTATTTATTAAAG
Found at i:37633426 original size:42 final size:42
Alignment explanation
Indices: 37633364--37633445 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
37633354 GGAAATAAGG
* *
37633364 GAGCAACACAGGGTCCTTAGAGATGCTTGCAGGTGAAGAAAA
1 GAGCAACACAGGGTCCTTAGAGATACTTACAGGTGAAGAAAA
* **
37633406 GAGCAACATAGGGTTTTTAGAGATACTTACAGGTGAAGAA
1 GAGCAACACAGGGTCCTTAGAGATACTTACAGGTGAAGAA
37633446 GGGAGGGCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.37, C:0.13, G:0.29, T:0.21
Consensus pattern (42 bp):
GAGCAACACAGGGTCCTTAGAGATACTTACAGGTGAAGAAAA
Found at i:37634697 original size:23 final size:22
Alignment explanation
Indices: 37634671--37634723 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
37634661 CACATGTCAA
37634671 AATTTAGTAATTTAATACAT-AAT
1 AATTTA-TAATTTAATA-ATAAAT
*
37634694 AATTATATTATTTAATAATAAAT
1 AATT-TATAATTTAATAATAAAT
37634717 ATATTTA
1 A-ATTTA
37634724 CCCATAAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 2 0.08
23 19 0.73
24 5 0.19
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (22 bp):
AATTTATAATTTAATAATAAAT
Found at i:37635732 original size:42 final size:42
Alignment explanation
Indices: 37635666--37635758 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
37635656 TAAAATAGCC
* * *
37635666 CTCCC-TCTTCACCTGTAAGTATCTCTAATAACCCTATGCGG
1 CTCCCTTCTTCACCTGCAAGCATCTCTAAGAACCCTATGCGG
* * * **
37635707 CTCCCTTCTTCACTTGCAAGCATCTCTAAGGACCCTGTGTTG
1 CTCCCTTCTTCACCTGCAAGCATCTCTAAGAACCCTATGCGG
37635749 CTCCCTTCTT
1 CTCCCTTCTT
37635759 TCCTTTTCGT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 5 0.12
42 38 0.88
ACGTcount: A:0.17, C:0.35, G:0.13, T:0.34
Consensus pattern (42 bp):
CTCCCTTCTTCACCTGCAAGCATCTCTAAGAACCCTATGCGG
Found at i:37637071 original size:22 final size:22
Alignment explanation
Indices: 37637043--37637195 Score: 225
Period size: 22 Copynumber: 7.0 Consensus size: 22
37637033 TTTATTGTTC
*
37637043 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
37637065 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
**
37637087 AGCCATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
** * * *
37637109 AGCCATGAGGGTTTAGTTCGTT
1 AAACATGAGAGCTTAGTACGTT
37637131 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
*
37637153 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
37637175 AAACATGAGAGCTTAGTACGT
1 AAACATGAGAGCTTAGTACGT
37637196 ACTATCAACA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 119 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTT
Found at i:37637317 original size:23 final size:23
Alignment explanation
Indices: 37637264--37637318 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 23
37637254 GCATGTTAAA
*
37637264 ATTTAGTACTTTAATAAATAATT
1 ATTTATTACTTTAATAAATAATT
37637287 ATTATATTA-TTTAA-AAATAAATAT
1 ATT-TATTACTTTAATAAAT-AAT-T
37637311 ATTTATTA
1 ATTTATTA
37637319 AAGAAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
22 4 0.14
23 16 0.57
24 8 0.29
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
ATTTATTACTTTAATAAATAATT
Found at i:37637320 original size:19 final size:22
Alignment explanation
Indices: 37637273--37637317 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
37637263 AATTTAGTAC
*
37637273 TTTAATAAATAATTATTATATTA
1 TTTAA-AAATAAATATTATATTA
37637296 TTTAAAAATAAATA-TAT-TTA
1 TTTAAAAATAAATATTATATTA
37637316 TT
1 TT
37637318 AAAGAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 5 0.24
21 3 0.14
22 8 0.38
23 5 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTAAAAATAAATATTATATTA
Found at i:37637967 original size:108 final size:110
Alignment explanation
Indices: 37637768--37638028 Score: 305
Period size: 108 Copynumber: 2.4 Consensus size: 110
37637758 GTATTGTTCA
* ** *
37637768 GTCAATGGCTGGCACCAGAATACGAAAAAAAG-AAAAAAAATATTTTTTTGTGGTGGCCTACCAA
1 GTCAATGGCAGGCACCAGAATACG-AAAAAAGTAAAAAAAATATAATTTGGTGGTGGCCTACCAA
* *
37637832 TGGCCGGCACCACCTTTTTCCCCAAATTTTTTTTTACTTTTGGTCT
65 TGGCCGGCACCACCTTTATCCCCAAATTTTTTTTCACTTTTGGTCT
* * *
37637878 GTCAAATGTC-GGCACCAGTATACGAAAAAAGTAAAAAAAA-A-AATTTGGTGGTGGCCTGCCAA
1 GTC-AATGGCAGGCACCAGAATACGAAAAAAGTAAAAAAAATATAATTTGGTGGTGGCCTACCAA
* * **** ** *
37637940 TGGCTGGCACCAGCTTTATGGGTAAATTTTTTTTCACTTTTTTTGT
65 TGGCCGGCACCACCTTTATCCCCAAATTTTTTTTCACTTTTGGTCT
*
37637986 GTCAATGGCAGGCACTAGAATACGAAAAAAGTAAAAAAAATAT
1 GTCAATGGCAGGCACCAGAATACGAAAAAAGTAAAAAAAATAT
37638029 TTTTTGGGGA
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
107 5 0.04
108 83 0.66
109 9 0.07
110 24 0.19
111 5 0.04
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (110 bp):
GTCAATGGCAGGCACCAGAATACGAAAAAAGTAAAAAAAATATAATTTGGTGGTGGCCTACCAAT
GGCCGGCACCACCTTTATCCCCAAATTTTTTTTCACTTTTGGTCT
Found at i:37638704 original size:42 final size:42
Alignment explanation
Indices: 37638634--37638727 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
37638624 TAAAATAGCC
* *
37638634 CTCCCTTCTTCACCTGTAAGTATCTCTAAGAACCCTGTGCTG
1 CTCCCTTCTTCACCTGCAAGCATCTCTAAGAACCCTGTGCTG
* * * * *
37638676 CTCCCTTCTTCACTTGCAAGCATTTCTAAGGACCTTGTGTTG
1 CTCCCTTCTTCACCTGCAAGCATCTCTAAGAACCCTGTGCTG
37638718 CTCCCTTCTT
1 CTCCCTTCTT
37638728 TCCTTTTCGT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.16, C:0.33, G:0.14, T:0.37
Consensus pattern (42 bp):
CTCCCTTCTTCACCTGCAAGCATCTCTAAGAACCCTGTGCTG
Found at i:37640174 original size:23 final size:23
Alignment explanation
Indices: 37640120--37640174 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 23
37640110 CGCATGTCAA
*
37640120 AATTTAGTACTTTAATAAATAAT
1 AATTTATTACTTTAATAAATAAT
37640143 AATTATATTA-TTTAA-AAATAAAT
1 AATT-TATTACTTTAATAAAT-AAT
37640166 ATATTTATT
1 A-ATTTATT
37640175 CAAGAAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
22 4 0.14
23 17 0.61
24 7 0.25
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
AATTTATTACTTTAATAAATAAT
Found at i:37643500 original size:22 final size:22
Alignment explanation
Indices: 37643474--37643522 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
37643464 TTAAATGATT
*
37643474 ATAAACAAATA-ACTAATAATAA
1 ATAAACAAATATACCAA-AATAA
* *
37643496 ATAAATAACTATACCAAAATAA
1 ATAAACAAATATACCAAAATAA
37643518 ATAAA
1 ATAAA
37643523 TATGGGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.22
Consensus pattern (22 bp):
ATAAACAAATATACCAAAATAA
Found at i:37644277 original size:6 final size:6
Alignment explanation
Indices: 37644261--37644291 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
37644251 CTGTGAAATG
37644261 AAAGTAA AAAGAA AAAGAA AAAGAA AAAGAA
1 AAAG-AA AAAGAA AAAGAA AAAGAA AAAGAA
37644292 TGGTCTTTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (6 bp):
AAAGAA
Found at i:37644674 original size:11 final size:11
Alignment explanation
Indices: 37644658--37644684 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
37644648 CCTGCTTCTG
37644658 CTTGTTGGCTT
1 CTTGTTGGCTT
37644669 CTTGTTGGCTT
1 CTTGTTGGCTT
37644680 CTTGT
1 CTTGT
37644685 AGGTGGTGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.19, G:0.26, T:0.56
Consensus pattern (11 bp):
CTTGTTGGCTT
Found at i:37645778 original size:312 final size:312
Alignment explanation
Indices: 37645391--37647365 Score: 3076
Period size: 312 Copynumber: 6.3 Consensus size: 312
37645381 AGATTGGTTT
* * * * *
37645391 AACCTTCTCCACTGAAACTTCAGGGAGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAG-
1 AACCTGCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* * * * *
37645455 GAAGATGAGATCTGTTATGATAGATTTAATATGTTCCACTGAAACTTCAGGGAAATACGATTCGC
66 G-AGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGC
* ** *
37645520 TATCTTTAATCTGTTCCACTAAAACTTCAAGGAGATAGGATCCATCATCTTAATCCGTTCCACTG
130 TATCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAGGATCCATCATCTTAATCCGCTCCACTG
* * *
37645585 CAA-TTCCAGGAAGGTAGGATTAATAACTTCAATATGCTCCACTGCAATTTCAGGGAGATAAGAC
195 CAACTT-CAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGAC
* *
37645649 TTGTATCTTCAACTTGCCCCACTGCAACTTTATGGGGATAAGGGTTGCTATTTC
259 TTGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
* *
37645703 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGTAACTTCAGA
1 AACCTGCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* * * *
37645768 GAGATGAGATCTGTTATGGTAGATTTAATCTGTTCTATTGCAACTTCAGGGAAATACGATTTACT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCT
* * * *
37645833 ATCTTTAATCTGCTCCACTACAACTTCAGGGAGATAGGATCCATCATCTTAATCCGTTCCACTAC
131 ATCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAGGATCCATCATCTTAATCCGCTCCACTGC
*
37645898 AACTTCAGAGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
196 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
*
37645963 GTATCTTCAACTTGCCCCACTACAACTTCATGGGGATAAGGTTTGCTATTTC
261 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
* * *
37646015 AACCTGCTCTACTGTAATTTCAGAGAGATAAAGTTTGATATGATCTACTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* *
37646080 GAGACGAGATCTGTTATGGTAGATTTACTCTGTTCTACTGCAACTTCAGGGAAATACGATTTGCT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCT
* * * * *
37646145 ATCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAGGATCCATCATCTTAATCTGTTCCACTAC
131 ATCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAGGATCCATCATCTTAATCCGCTCCACTGC
*
37646210 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGTAATTTCAGGGAGATAAGACTT
196 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
37646275 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
261 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
*
37646327 AACCTGCTCTACTGTAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* * *
37646392 GAGACGAGATCTGTTATGGTAGATTTAATCTATTCTACTACAACTTCAGGGAAATACGATTTGCT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCT
* * * *
37646457 ATCTTTAATTTGTTCCACTGCAACTTCAAGGAGATAGGATCCATCATGTTAATTCGCTCCACTGC
131 ATCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAGGATCCATCATCTTAATCCGCTCCACTGC
* * *
37646522 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGTAACTTCAGGGAAATAAGACTT
196 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
37646587 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
261 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
* * *
37646639 AACCTGCTCTACTACAACTTCAGAGAGATAAAGTTTGATATGACCTGATCTACTGCAACTTCAGA
1 AACCTGCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* * ** *
37646704 GAGACGATATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGAAAATAAAATTTTCT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCT
* * *
37646769 ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATCCATCATTTTAATTCGCTCCACTGC
131 ATCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAGGATCCATCATCTTAATCCGCTCCACTGC
* *
37646834 AACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTGCAATTTTAGGGAGATAAGACTT
196 AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
* * *
37646899 GTGTCTTCAACTTGCCCTACTGCAACTTCATGGAGATAAGGTTTGCTATTTC
261 GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
* * * *
37646951 AACCTGCTCTGCTGCAACTTCAAAGAGATAAAGTTTGATATGATCTACTCTACTGCAACATCAGA
1 AACCTGCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* *
37647016 GAGACGAGATCTGTTATGGTAGATTTAATTTGTTCCACTGCAACTTTAGGGAAATACGATTTGCT
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCT
* * * * * **
37647081 ATCTTTAATCTGCTTCATTGCAAATTC-AGGTAGATAGGATCCATTATTTTAATTTGCTCCACTG
131 ATCTTTAATCTGCTCCACTGCAACTTCAAGG-AGATAGGATCCATCATCTTAATCCGCTCCACTG
** * *
37647145 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTTTACTGCAACTTCAGAGAGATAAGACT
195 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACT
* *
37647210 TGTATCTTCAACTTGCTCCACTGCAACTTCATGGGGATAAGGTTTTCT-TTATC
260 TGTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATT-TC
37647263 AACCTGCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
1 AACCTGCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
* *
37647328 GAGAAGAGATTTGTTATGGTAGATTTAATCTGTTCCAC
66 GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCAC
37647366 CTATAATAGC
Statistics
Matches: 1544, Mismatches: 115, Indels: 8
0.93 0.07 0.00
Matches are distributed among these distances:
311 4 0.00
312 1537 1.00
313 3 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (312 bp):
AACCTGCTCTACTGCAACTTCAGAGAGATAAAGTTTGATATGATCTGCTCTACTGCAACTTCAGA
GAGACGAGATCTGTTATGGTAGATTTAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCT
ATCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAGGATCCATCATCTTAATCCGCTCCACTGC
AACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGACTT
GTATCTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGGTTTGCTATTTC
Found at i:37645938 original size:44 final size:44
Alignment explanation
Indices: 37645808--37646936 Score: 274
Period size: 44 Copynumber: 25.4 Consensus size: 44
37645798 TGTTCTATTG
* * * *
37645808 CAACTTCAGGGAAATACGATTTACTATCTTTAATCTGCTCCACTA
1 CAACTTCAGGGAGATAGGA-TTAGTATCTTCAATCTGCTCCACTA
* * *
37645853 CAACTTCAGGGAGATAGGATCCA-TCATCTT-AATCCGTTCCACTA
1 CAACTTCAGGGAGATAGGAT-TAGT-ATCTTCAATCTGCTCCACTA
* * * *
37645897 CAACTTCAGAGAGGTAGGATTAGTAACTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAGGATTAGTATCTTCAATCTGCTCCACTA
* * *
37645941 CAATTTCAGGGAGATAAGACTT-GTATCTTCAA-CTTGCCCCACTA
1 CAACTTCAGGGAGATAGGA-TTAGTATCTTCAATC-TGCTCCACTA
* * * *
37645985 CAACTTCATGGG-GATAAGG-TTTGCTAT-TTCAACCTGCTCTACTG
1 CAACTTCA-GGGAGAT-AGGATTAG-TATCTTCAATCTGCTCCACTA
* * * * * * * * * *
37646029 TAATTTCAGAGAGATA-AAGTTTG-AT-AT-GATCTACTCTACTG
1 CAACTTCAGGGAGATAGGA-TTAGTATCTTCAATCTGCTCCACTA
* * ** * * * * *
37646070 CAACTTCAGAGAGA-CGAGATCTGTTATGGTAGATTTACTCTGTTCTACTG
1 CAACTTCAGGGAGATAG-GA----TTA--GTATCTTCAATCTGCTCCACTA
* * * * * *
37646120 CAACTTCAGGGAAATACGATTTGCTATCTTTAATCTGCTCTACTG
1 CAACTTCAGGGAGATAGGATTAG-TATCTTCAATCTGCTCCACTA
* *
37646165 CAACTTCAGGGAGATAGGATCCA-TCATCTT-AATCTGTTCCACTA
1 CAACTTCAGGGAGATAGGAT-TAGT-ATCTTCAATCTGCTCCACTA
* * *
37646209 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAGGATTAGTATCTTCAATCTGCTCCACTA
* * * * *
37646253 TAATTTCAGGGAGATAAGACTT-GTATCTTCAA-CTTGCCCCACTG
1 CAACTTCAGGGAGATAGGA-TTAGTATCTTCAATC-TGCTCCACTA
* * * *
37646297 CAACTTCATGGG-GATAAGG-TTTGCTAT-TTCAACCTGCTCTACTG
1 CAACTTCA-GGGAGAT-AGGATTAG-TATCTTCAATCTGCTCCACTA
* * * * * * * *
37646341 TAACTTCAGAGAGATA-AAGTTTG-AT-AT-GATCTGCTCTACTG
1 CAACTTCAGGGAGATAGGA-TTAGTATCTTCAATCTGCTCCACTA
* * ** * ** *
37646382 CAACTTCAGAGAGA-CGAGATCTGTTATGGTAGATTTAATCTATTCTACTA
1 CAACTTCAGGGAGATAG-GA----TTA--GTATCTTCAATCTGCTCCACTA
* * * * * * *
37646432 CAACTTCAGGGAAATACGATTTGCTATCTTTAATTTGTTCCACTG
1 CAACTTCAGGGAGATAGGATTAG-TATCTTCAATCTGCTCCACTA
* * * *
37646477 CAACTTCAAGGAGATAGGATCCA-TCATGTT-AAT-TCGCTCCACTG
1 CAACTTCAGGGAGATAGGAT-TAGT-ATCTTCAATCT-GCTCCACTA
* * *
37646521 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAGGATTAGTATCTTCAATCTGCTCCACTA
* * * * *
37646565 TAACTTCAGGGAAATAAGACTT-GTATCTTCAA-CTTGCCCCACTG
1 CAACTTCAGGGAGATAGGA-TTAGTATCTTCAATC-TGCTCCACTA
* * *
37646609 CAACTTCATGGG-GATAAGG-TTTGCTAT-TTCAACCTGCTCTACTA
1 CAACTTCA-GGGAGAT-AGGATTAG-TATCTTCAATCTGCTCCACTA
* * * * * * * * *
37646653 CAACTTCAGAGAGATA-AAGTTTG-AT-AT-GACCTGATCTACTG
1 CAACTTCAGGGAGATAGGA-TTAGTATCTTCAATCTGCTCCACTA
* ** * * *
37646694 CAACTTCAGAGAGACGATATCTG-TTATGGTAGATTTAATCTGTTCCACTG
1 CAACTTCAG-G-GA-GATA--GGATTA--GTATCTTCAATCTGCTCCACTA
* * ** ** * *
37646744 CAACTTCAGGAAAATAAAATTTTCTATCTTTAATCTGCTCCACTG
1 CAACTTCAGGGAGATAGGA-TTAGTATCTTCAATCTGCTCCACTA
* * *
37646789 CAACTTCAGGGAGATAGGATCCA-TCAT-TTTAAT-TCGCTCCACTG
1 CAACTTCAGGGAGATAGGAT-TAGT-ATCTTCAATCT-GCTCCACTA
* * * *
37646833 CAACTTCAGGGAGGTAGGATTAGTAACTTCAATATGCTCCACTG
1 CAACTTCAGGGAGATAGGATTAGTATCTTCAATCTGCTCCACTA
* * * * *
37646877 CAATTTTAGGGAGATAAGACTT-GTGTCTTCAA-CTTGC-CCTACTG
1 CAACTTCAGGGAGATAGGA-TTAGTATCTTCAATC-TGCTCC-ACTA
*
37646921 CAACTTCATGGAGATA
1 CAACTTCAGGGAGATA
37646937 AGGTTTGCTA
Statistics
Matches: 824, Mismatches: 170, Indels: 181
0.70 0.14 0.15
Matches are distributed among these distances:
41 68 0.08
42 11 0.01
43 40 0.05
44 439 0.53
45 179 0.22
46 4 0.00
47 8 0.01
48 4 0.00
49 4 0.00
50 67 0.08
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
CAACTTCAGGGAGATAGGATTAGTATCTTCAATCTGCTCCACTA
Found at i:37646952 original size:44 final size:44
Alignment explanation
Indices: 37646904--37646987 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
37646894 GACTTGTGTC
* ** *
37646904 TTCAACTTGCCCTACTGCAACTTCATGGAGATAAGGTTTGCTAT
1 TTCAACCTGCCCTACTGCAACTTCAAAGAGATAAAGTTTGCTAT
* *
37646948 TTCAACCTGCTCTGCTGCAACTTCAAAGAGATAAAGTTTG
1 TTCAACCTGCCCTACTGCAACTTCAAAGAGATAAAGTTTG
37646988 ATATGATCTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (44 bp):
TTCAACCTGCCCTACTGCAACTTCAAAGAGATAAAGTTTGCTAT
Found at i:37647189 original size:44 final size:44
Alignment explanation
Indices: 37647134--37647293 Score: 130
Period size: 44 Copynumber: 3.6 Consensus size: 44
37647124 TTATTTTAAT
* * *
37647134 TTGCTCCACTGCAACTTCAGGGAGGTAGGA-TTAGTAACTTCAA-
1 TTGCTCCACTGCAACTTCAGAGAGATAAGACTT-GTAACTTCAAC
** *
37647177 TCTGCTTTACTGCAACTTCAGAGAGATAAGACTTGTATCTTCAAC
1 T-TGCTCCACTGCAACTTCAGAGAGATAAGACTTGTAACTTCAAC
* * * ***
37647222 TTGCTCCACTGCAACTTCATG-GGGATAAG-GTTTTCTTTATCAAC
1 TTGCTCCACTGCAACTTCA-GAGAGATAAGACTTGTAACT-TCAAC
* *
37647266 CTGCTCTACTGCAACTTCAGAGAGATAA
1 TTGCTCCACTGCAACTTCAGAGAGATAA
37647294 AGTTTGATAT
Statistics
Matches: 95, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
43 7 0.07
44 84 0.88
45 4 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
TTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTAACTTCAAC
Found at i:37652920 original size:10 final size:11
Alignment explanation
Indices: 37652898--37652922 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37652888 AAATATATAT
37652898 AATACTAAAAA
1 AATACTAAAAA
37652909 AATACTAAAAA
1 AATACTAAAAA
37652920 AAT
1 AAT
37652923 CAAAATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (11 bp):
AATACTAAAAA
Found at i:37653046 original size:30 final size:30
Alignment explanation
Indices: 37653010--37653072 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
37653000 ACTTAATAAG
37653010 CAAATGCCTCTAAAATAATAACAAAATCAA
1 CAAATGCCTCTAAAATAATAACAAAATCAA
* *
37653040 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATCAA
37653070 CAA
1 CAA
37653073 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.17, G:0.03, T:0.22
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATCAA
Found at i:37653140 original size:11 final size:11
Alignment explanation
Indices: 37653110--37653148 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
37653100 CAATAACAAC
* *
37653110 AAAATAGTAGC
1 AAAATAATAGT
*
37653121 AACATAATAGT
1 AAAATAATAGT
37653132 AAAATAATAGT
1 AAAATAATAGT
37653143 AAAATA
1 AAAATA
37653149 TGGAGAAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.23
Consensus pattern (11 bp):
AAAATAATAGT
Found at i:37653189 original size:21 final size:22
Alignment explanation
Indices: 37653154--37653196 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
37653144 AAATATGGAG
*
37653154 AAAACAACAAGAAAATAACATT
1 AAAACAACAAAAAAATAACATT
*
37653176 AAAA-AACAAAAAAATAGCATT
1 AAAACAACAAAAAAATAACATT
37653197 TTTTTTTGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.70, C:0.12, G:0.05, T:0.14
Consensus pattern (22 bp):
AAAACAACAAAAAAATAACATT
Found at i:37656836 original size:22 final size:22
Alignment explanation
Indices: 37656804--37656856 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
37656794 AAATAAATCC
37656804 TTTCTCT-AATTTCCTCTC-AA
1 TTTCTCTCAATTTCCTCTCAAA
37656824 TTTGCTCTCAATTTCCTCTCAAA
1 TTT-CTCTCAATTTCCTCTCAAA
37656847 TTTCTCTCAA
1 TTTCTCTCAA
37656857 ATCCCTATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 3 0.10
21 4 0.13
22 18 0.60
23 5 0.17
ACGTcount: A:0.21, C:0.30, G:0.02, T:0.47
Consensus pattern (22 bp):
TTTCTCTCAATTTCCTCTCAAA
Found at i:37656858 original size:11 final size:11
Alignment explanation
Indices: 37656806--37656856 Score: 68
Period size: 11 Copynumber: 4.5 Consensus size: 11
37656796 ATAAATCCTT
37656806 TCTCTAATTTCC
1 TCTC-AATTTCC
*
37656818 TCTCAATTTGC
1 TCTCAATTTCC
37656829 TCTCAATTTCC
1 TCTCAATTTCC
37656840 TCTCAAATTT-C
1 TCTC-AATTTCC
37656851 TCTCAA
1 TCTCAA
37656857 ATCCCTATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
10 2 0.06
11 25 0.69
12 9 0.25
ACGTcount: A:0.22, C:0.31, G:0.02, T:0.45
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:37659026 original size:21 final size:21
Alignment explanation
Indices: 37658997--37659041 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
37658987 ATACCCTACT
*
37658997 GGAGGAACCAAAATCCCC-GCC
1 GGAGCAACCAAAA-CCCCTGCC
*
37659018 GGAGCAACCACAACCCCTGCC
1 GGAGCAACCAAAACCCCTGCC
37659039 GGA
1 GGA
37659042 AGCTGGACGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.31, C:0.40, G:0.24, T:0.04
Consensus pattern (21 bp):
GGAGCAACCAAAACCCCTGCC
Found at i:37662590 original size:126 final size:126
Alignment explanation
Indices: 37662359--37662649 Score: 420
Period size: 126 Copynumber: 2.3 Consensus size: 126
37662349 CAGGCCATGC
* *
37662359 GCCACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGTTGACAAAGCATCCT
1 GCCACTGTAGCAAAAGCGCGTCCACGTGGAAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
* *
37662424 ACTTAAAGCATTTTTGACACTGTTCGCTCAGAAACATCTACTCAAAATTATTTTTTTAAGA
66 ACTTAAAGCATTTTTGACACTGTTCGCTCAGAAACATCTACTCAAAATTATTTTCTCAAGA
* * * * *
37662485 GCTACTGTAGCAAAAGCGCGTCCACGTGTAAGCTTTTTTCAGTACTTCTGCTGACAAAGTATCTT
1 GCCACTGTAGCAAAAGCGCGTCCACGTGGAAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
* * * * *
37662550 GCTTAAAGCATTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTCTCAGGA
66 ACTTAAAGCATTTTTGACACTGTTCGCTCAGAAACATCTACTCAAAATTATTTTCTCAAGA
* * * *
37662611 GCCACTGTAGTAAAAGAGCGTCCACATGGGAGCTTCTTT
1 GCCACTGTAGCAAAAGCGCGTCCACGTGGAAGCTTCTTT
37662650 AAATTAATAA
Statistics
Matches: 144, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
126 144 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (126 bp):
GCCACTGTAGCAAAAGCGCGTCCACGTGGAAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
ACTTAAAGCATTTTTGACACTGTTCGCTCAGAAACATCTACTCAAAATTATTTTCTCAAGA
Found at i:37683106 original size:19 final size:17
Alignment explanation
Indices: 37683082--37683116 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
37683072 TATGTTAATT
37683082 TTATTATTGTAAAGTAGAG
1 TTATTATT-TAAA-TAGAG
37683101 TTATTATTTAAATAGA
1 TTATTATTTAAATAGA
37683117 ATTTTAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 8 0.50
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (17 bp):
TTATTATTTAAATAGAG
Found at i:37684643 original size:28 final size:28
Alignment explanation
Indices: 37684612--37684682 Score: 72
Period size: 28 Copynumber: 2.5 Consensus size: 28
37684602 AAAAATTACA
37684612 AAAAAAATCAAAAAATTTTAAAAAATTT
1 AAAAAAATCAAAAAATTTTAAAAAATTT
*** *
37684640 AAAATAAAT-TTTAAATTTTAAAATATTT
1 AAAA-AAATCAAAAAATTTTAAAAAATTT
37684668 ATAAAAAATTCAAAA
1 A-AAAAAA-TCAAAA
37684683 TTTATATTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
28 23 0.72
29 8 0.25
30 1 0.03
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (28 bp):
AAAAAAATCAAAAAATTTTAAAAAATTT
Found at i:37684648 original size:21 final size:21
Alignment explanation
Indices: 37684624--37684683 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 21
37684614 AAAAATCAAA
37684624 AAATTTTAAAAAATTTAAAAT
1 AAATTTTAAAAAATTTAAAAT
*
37684645 AAATTTT--AAATTTTAAAAT
1 AAATTTTAAAAAATTTAAAAT
*
37684664 --ATTTATAAAAAATTCAAAAT
1 AAATTT-TAAAAAATTTAAAAT
37684684 TTATATTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 4 0.12
18 1 0.03
19 11 0.33
20 10 0.30
21 7 0.21
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAATTTTAAAAAATTTAAAAT
Found at i:37684683 original size:28 final size:28
Alignment explanation
Indices: 37684623--37684685 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
37684613 AAAAAATCAA
*
37684623 AAAATTTTAAAAAATTTAAAATAAATTT
1 AAAATTTTAAAAAATTTAAAATAAATTC
* *
37684651 TAAATTTTAAAATATTTATAAA-AAATTC
1 AAAATTTTAAAAAATTTA-AAATAAATTC
37684679 AAAATTT
1 AAAATTT
37684686 ATATTTTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 27 0.90
29 3 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (28 bp):
AAAATTTTAAAAAATTTAAAATAAATTC
Found at i:37685668 original size:48 final size:48
Alignment explanation
Indices: 37685597--37685693 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
37685587 CTTATGATTG
*
37685597 TTTCTTATTTTCCCTGAAATGATATGATTTATAAATTTACTGTAAGAT
1 TTTCTTATTTTCCCTGAAATGATACGATTTATAAATTTACTGTAAGAT
37685645 TTTCTTATTTTCCCTGAAATGATACGATTTATAAATTTACTGTAAGAT
1 TTTCTTATTTTCCCTGAAATGATACGATTTATAAATTTACTGTAAGAT
37685693 T
1 T
37685694 AGAATTTTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.31, C:0.11, G:0.10, T:0.47
Consensus pattern (48 bp):
TTTCTTATTTTCCCTGAAATGATACGATTTATAAATTTACTGTAAGAT
Found at i:37686305 original size:16 final size:16
Alignment explanation
Indices: 37686275--37686304 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37686265 TAAATATGTA
37686275 AATTTAATAAGTTTTG
1 AATTTAATAAGTTTTG
37686291 AATTTAATAA-TTTT
1 AATTTAATAAGTTTT
37686305 TTTAAACCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (16 bp):
AATTTAATAAGTTTTG
Found at i:37689485 original size:23 final size:24
Alignment explanation
Indices: 37689433--37689482 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
37689423 TTGTAGATTT
37689433 AGAA-TTTAGTCCTTTTTATTTTC
1 AGAATTTTAGTCCTTTTTATTTTC
37689456 AGAATTTTAGT-CTTTTTACTTTTC
1 AGAATTTTAGTCCTTTTTA-TTTTC
37689480 AGA
1 AGA
37689483 TTTCAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.24, C:0.12, G:0.10, T:0.54
Consensus pattern (24 bp):
AGAATTTTAGTCCTTTTTATTTTC
Found at i:37694491 original size:24 final size:25
Alignment explanation
Indices: 37694445--37694491 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
37694435 TAAGATAAAA
** *
37694445 TATTATAATATATTTTAACTTTAAT
1 TATTATAATATATAATAAATTTAAT
37694470 TATTA-AATATATAATAAATTTA
1 TATTATAATATATAATAAATTTA
37694492 CACATAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (25 bp):
TATTATAATATATAATAAATTTAAT
Found at i:37699092 original size:27 final size:28
Alignment explanation
Indices: 37699052--37699122 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
37699042 TTTTATGGTT
*
37699052 TAGGG-TTAGTGTTTTTAAAAAA-AAAC
1 TAGGGTTTAGGGTTTTTAAAAAATAAAC
* *
37699078 TAGGGTTTAGGGTTTTAAAAAAATAAAT
1 TAGGGTTTAGGGTTTTTAAAAAATAAAC
*
37699106 TTGGGTTTAGGGTTTTT
1 TAGGGTTTAGGGTTTTT
37699123 TAATAGGTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
26 5 0.13
27 15 0.39
28 18 0.47
ACGTcount: A:0.34, C:0.01, G:0.24, T:0.41
Consensus pattern (28 bp):
TAGGGTTTAGGGTTTTTAAAAAATAAAC
Found at i:37699258 original size:14 final size:14
Alignment explanation
Indices: 37699239--37699276 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
37699229 TAGTTGATTC
37699239 TGAAAAAATAATTT
1 TGAAAAAATAATTT
* *
37699253 TGAAAAGATAGTTT
1 TGAAAAAATAATTT
37699267 TGAAAAAATA
1 TGAAAAAATA
37699277 TCTCGGGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (14 bp):
TGAAAAAATAATTT
Found at i:37699478 original size:127 final size:127
Alignment explanation
Indices: 37699312--37699626 Score: 436
Period size: 127 Copynumber: 2.5 Consensus size: 127
37699302 AGTTGGGGTT
* *
37699312 AAAAACACTTCAAGTAGGATGCACTGTCAGCAAAAGTACTAAAAAAAAGCTCCCAGCTGGAC-AC
1 AAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACT-AAAAAAAGCTCCCAGCTGGACTAC
* * *
37699376 TTTTTTTGTA-TAGTTGATTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGGTTG
65 TTTTTTTGTACT-GTTGATTCTGAAAAAATAAATTTAAGAAGATGGTTCTGAAAAAATAGATTG
* * * * **
37699439 AAAAATGCTTCAAGCAAGATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCAGCTAGACTTTT
1 AAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTCCCAGCTGGACTACT
* *
37699504 TTTTTTGTACTGTTGTTTCTGAAAAAATAAATTTAAGAAGATGGTTTTGAAAAAATAGATTG
66 TTTTTTGTACTGTTGATTCTGAAAAAATAAATTTAAGAAGATGGTTCTGAAAAAATAGATTG
* * * * *
37699566 AAAAACGCTTCAAGCAGGATGCACTGTTAGAAAAAGTACTGAAAAAAGCTTCTAGCTGGAC
1 AAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTCCCAGCTGGAC
37699627 GCTCTTTTCA
Statistics
Matches: 164, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
126 20 0.12
127 143 0.87
128 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (127 bp):
AAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTAAAAAAAGCTCCCAGCTGGACTACT
TTTTTTGTACTGTTGATTCTGAAAAAATAAATTTAAGAAGATGGTTCTGAAAAAATAGATTG
Found at i:37699794 original size:25 final size:25
Alignment explanation
Indices: 37699722--37699787 Score: 105
Period size: 25 Copynumber: 2.6 Consensus size: 25
37699712 TTACAGCAAG
*
37699722 AGAAGTTGAAGAAGTTCAAAAGAAT
1 AGAAATTGAAGAAGTTCAAAAGAAT
* *
37699747 AAAAATTGAAGAAGTTCAGAAGAAT
1 AGAAATTGAAGAAGTTCAAAAGAAT
37699772 AGAAATTGAAGAAGTT
1 AGAAATTGAAGAAGTT
37699788 GATAAGATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.53, C:0.03, G:0.23, T:0.21
Consensus pattern (25 bp):
AGAAATTGAAGAAGTTCAAAAGAAT
Found at i:37702834 original size:58 final size:57
Alignment explanation
Indices: 37702752--37702862 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 57
37702742 TAGTTCCTAA
*
37702752 TTTATTAAATGAAACTATGAAAAAATAATTTGTACAAAAATATTCAAAAAAATTCTGT
1 TTTATTAAATGAAACAATGAAAAAATAATTTGTACAAAAATATT-AAAAAAATTCTGT
* *
37702810 TTTATTAAATGAAACAAT-ATAAAAATAGTTTGTACAAATATATTAAAAAAATT
1 TTTATTAAATGAAACAATGA-AAAAATAATTTGTACAAAAATATTAAAAAAATT
37702863 AATGCATGTG
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
57 10 0.20
58 39 0.80
ACGTcount: A:0.53, C:0.05, G:0.06, T:0.35
Consensus pattern (57 bp):
TTTATTAAATGAAACAATGAAAAAATAATTTGTACAAAAATATTAAAAAAATTCTGT
Found at i:37705189 original size:16 final size:17
Alignment explanation
Indices: 37705150--37705265 Score: 74
Period size: 17 Copynumber: 6.4 Consensus size: 17
37705140 CGTGATCCGA
*
37705150 TTGAAACACGATATTTT
1 TTGAAACACGAGATTTT
*
37705167 TTAAAACACGAGA-TTT
1 TTGAAACACGAGATTTT
* *
37705183 TTGAAACACCATAATAATCTT
1 TTGAAACACGA-GAT--T-TT
*
37705204 TTGAAAACACG-GAAATTT
1 TTG-AAACACGAG-ATTTT
37705222 TTGAAACACGAGAATTTTT
1 TTGAAACACGAG-A-TTTT
*
37705241 TTGGAAACACGAAACTTTT
1 TT-GAAACACGAGA-TTTT
37705260 TTGAAA
1 TTGAAA
37705266 AATTACGAAA
Statistics
Matches: 78, Mismatches: 11, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
16 12 0.15
17 19 0.24
18 12 0.15
19 13 0.17
20 10 0.13
21 6 0.08
22 6 0.08
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.34
Consensus pattern (17 bp):
TTGAAACACGAGATTTT
Found at i:37705225 original size:18 final size:18
Alignment explanation
Indices: 37705202--37705266 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 18
37705192 CATAATAATC
37705202 TTTTGAAAACACGGAAAT
1 TTTTGAAAACACGGAAAT
*
37705220 TTTTG-AAACACGAGAATTT
1 TTTTGAAAACACG-GAA-AT
*
37705239 TTTTGGAAACAC-GAAACTT
1 TTTTGAAAACACGGAAA--T
37705258 TTTTGAAAA
1 TTTTGAAAA
37705267 ATTACGAAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
17 7 0.18
18 11 0.28
19 15 0.38
20 6 0.15
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (18 bp):
TTTTGAAAACACGGAAAT
Found at i:37705228 original size:17 final size:17
Alignment explanation
Indices: 37705202--37705265 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 17
37705192 CATAATAATC
37705202 TTTTGAAAACACGGAAAT
1 TTTTG-AAACACGGAAAT
*
37705220 TTTTGAAACACGAGAATTT
1 TTTTGAAACACG-GAA-AT
37705239 TTTTGGAAACAC-GAAACTT
1 TTTT-GAAACACGGAAA--T
37705258 TTTTGAAA
1 TTTTGAAA
37705266 AATTACGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 7 0.18
18 15 0.38
19 10 0.26
20 7 0.18
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (17 bp):
TTTTGAAACACGGAAAT
Found at i:37705301 original size:28 final size:28
Alignment explanation
Indices: 37705244--37705302 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
37705234 AATTTTTTTG
**
37705244 GAAACACGAAACTTTTTTGAAAAATTAC
1 GAAACACGAAACTTTTTTGAAAAAACAC
*
37705272 GAAACACGAGAA-TTTTTTTAAAAAACAC
1 GAAACACGA-AACTTTTTTGAAAAAACAC
37705300 GAA
1 GAA
37705303 TATTTTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 25 0.93
29 2 0.07
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.25
Consensus pattern (28 bp):
GAAACACGAAACTTTTTTGAAAAAACAC
Found at i:37705314 original size:18 final size:17
Alignment explanation
Indices: 37705273--37705401 Score: 80
Period size: 18 Copynumber: 6.9 Consensus size: 17
37705263 AAAAATTACG
37705273 AAACACGAGAATTTTTTTAAA
1 AAACACGA-AA-TTTTTT--A
37705294 AAACACGAATATTTTTTA
1 AAACACGAA-ATTTTTTA
* *
37705312 AAACATAGAATTTTTTTTTGA
1 AAACA-CGAA--ATTTTTT-A
* *
37705333 AAATACGAAGA-TTTTTG
1 AAACACGAA-ATTTTTTA
*
37705350 AAACACGGAAATTTTTGA
1 AAACAC-GAAATTTTTTA
*
37705368 AAACACGAAATTTTGTGA
1 AAACACGAAATTTT-TTA
*
37705386 AAACATGAAATTTTTT
1 AAACACGAAATTTTTT
37705402 TTGAAAAATG
Statistics
Matches: 89, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
17 15 0.17
18 40 0.45
19 3 0.03
20 17 0.19
21 14 0.16
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (17 bp):
AAACACGAAATTTTTTA
Found at i:37705322 original size:19 final size:18
Alignment explanation
Indices: 37705280--37705328 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
37705270 ACGAAACACG
37705280 AGAATTTTTTTAAAAAAC
1 AGAATTTTTTTAAAAAAC
* *
37705298 ACGAATATTTTTTAAAACAT
1 A-GAAT-TTTTTTAAAAAAC
37705318 AGAATTTTTTT
1 AGAATTTTTTT
37705329 TTGAAAATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 7 0.26
19 8 0.30
20 12 0.44
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (18 bp):
AGAATTTTTTTAAAAAAC
Found at i:37705329 original size:19 final size:18
Alignment explanation
Indices: 37705280--37705329 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
37705270 ACGAAACACG
*
37705280 AGAATTTTTTTAAAAAACA
1 AGAATTTTTTT-TAAAACA
* *
37705299 CGAATATTTTTTAAAACA
1 AGAATTTTTTTTAAAACA
37705317 TAGAATTTTTTTT
1 -AGAATTTTTTTT
37705330 TGAAAATACG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (18 bp):
AGAATTTTTTTTAAAACA
Found at i:37705376 original size:35 final size:35
Alignment explanation
Indices: 37705326--37705400 Score: 100
Period size: 35 Copynumber: 2.1 Consensus size: 35
37705316 ATAGAATTTT
*
37705326 TTTTTGAAAATACGAAGATTTT-TG-AAACACGGAAA
1 TTTTTGAAAACACGAA-ATTTTGTGAAAACA-GGAAA
*
37705361 TTTTTGAAAACACGAAATTTTGTGAAAACATGAAA
1 TTTTTGAAAACACGAAATTTTGTGAAAACAGGAAA
37705396 TTTTT
1 TTTTT
37705401 TTTGAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
34 5 0.14
35 26 0.72
36 5 0.14
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (35 bp):
TTTTTGAAAACACGAAATTTTGTGAAAACAGGAAA
Found at i:37705919 original size:21 final size:21
Alignment explanation
Indices: 37705895--37705941 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
37705885 CTCGAGCTCC
37705895 TCTTTTTTTTCTT-TTTCCTTT
1 TCTTTTTTTTCTTATTT-CTTT
*
37705916 TC-TTTATTTCTTATTTCTTT
1 TCTTTTTTTTCTTATTTCTTT
37705936 T-TTTTT
1 TCTTTTT
37705942 CTGGTTGGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (21 bp):
TCTTTTTTTTCTTATTTCTTT
Found at i:37706104 original size:25 final size:25
Alignment explanation
Indices: 37706048--37706112 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
37706038 GCTGCTGTAG
*
37706048 GTGGCCTGCTGTTGGAGCTGGGCCT
1 GTGGCCTGCTGCTGGAGCTGGGCCT
*
37706073 G-GAGCCTGCTGCTGGCGCTGGG-CT
1 GTG-GCCTGCTGCTGGAGCTGGGCCT
37706097 GTTGGCCTGCCTGCTG
1 G-TGGCCTG-CTGCTG
37706113 AAACTGGTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
24 4 0.12
25 23 0.68
26 7 0.21
ACGTcount: A:0.03, C:0.28, G:0.43, T:0.26
Consensus pattern (25 bp):
GTGGCCTGCTGCTGGAGCTGGGCCT
Found at i:37706301 original size:9 final size:9
Alignment explanation
Indices: 37706285--37706325 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
37706275 TATGTTTTAG
37706285 ATTT-TTTT
1 ATTTCTTTT
37706293 ATTTCTTTT
1 ATTTCTTTT
37706302 ATTTCTTTT
1 ATTTCTTTT
*
37706311 CTTTCTTTT
1 ATTTCTTTT
37706320 ATTTCT
1 ATTTCT
37706326 ATTTTCTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 4 0.13
9 26 0.87
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (9 bp):
ATTTCTTTT
Found at i:37706315 original size:18 final size:18
Alignment explanation
Indices: 37706285--37706340 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
37706275 TATGTTTTAG
*
37706285 ATTT-TTTTATTTCTTTT
1 ATTTCTTTTCTTTCTTTT
37706302 ATTTCTTTTCTTTCTTTT
1 ATTTCTTTTCTTTCTTTT
37706320 ATTTCTATTTTCTTTCCTTTT
1 ATTTC--TTTTCTTT-CTTTT
37706341 TAGCTCTTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
17 4 0.12
18 17 0.50
20 8 0.24
21 5 0.15
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (18 bp):
ATTTCTTTTCTTTCTTTT
Found at i:37706357 original size:7 final size:7
Alignment explanation
Indices: 37706345--37706387 Score: 61
Period size: 7 Copynumber: 6.1 Consensus size: 7
37706335 CCTTTTTAGC
37706345 TCTTCTT
1 TCTTCTT
37706352 TCTTCTT
1 TCTTCTT
37706359 TCTTTCTT
1 TC-TTCTT
37706367 TCTTC-T
1 TCTTCTT
37706373 TCTTCTT
1 TCTTCTT
*
37706380 TTTTCTT
1 TCTTCTT
37706387 T
1 T
37706388 TTGTCTCTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
6 6 0.18
7 20 0.61
8 7 0.21
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (7 bp):
TCTTCTT
Found at i:37706542 original size:16 final size:15
Alignment explanation
Indices: 37706497--37706566 Score: 63
Period size: 15 Copynumber: 4.5 Consensus size: 15
37706487 CCTCCCTTTC
37706497 TCTTCTTT-TCTTTTT
1 TCTTCTTTGT-TTTTT
37706512 TCTTCTTTGTTTTTT
1 TCTTCTTTGTTTTTT
*
37706527 TCTTGCTTGTTATTTTTT
1 TCTT-C-T-TTGTTTTTT
*
37706545 TCTT-TTTCTTTTTT
1 TCTTCTTTGTTTTTT
37706559 TACTTCTT
1 T-CTTCTT
37706567 AGTTGCTTTG
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
14 9 0.19
15 21 0.45
16 4 0.09
17 1 0.02
18 12 0.26
ACGTcount: A:0.03, C:0.16, G:0.04, T:0.77
Consensus pattern (15 bp):
TCTTCTTTGTTTTTT
Found at i:37706946 original size:29 final size:28
Alignment explanation
Indices: 37706898--37706999 Score: 98
Period size: 29 Copynumber: 3.5 Consensus size: 28
37706888 CTTCTGGGGC
* * *
37706898 CAAAGTGTAAATTTAGGAAAATTTTAGGT
1 CAAAATGTAATTTTAAGAAAA-TTTAGGT
* *
37706927 CAAAATGTAATTTTGAGAAAGA-TAAGGAT
1 CAAAATGTAATTTTAAGAAA-ATTTAGG-T
*
37706956 TAAAATGTAATTTTAAGAAAATTTAGGGGT
1 CAAAATGTAATTTTAAGAAAATTTA--GGT
37706986 CAAAATGTAATTTT
1 CAAAATGTAATTTT
37707000 TTTTAAAAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
28 5 0.08
29 37 0.63
30 15 0.25
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.19, T:0.34
Consensus pattern (28 bp):
CAAAATGTAATTTTAAGAAAATTTAGGT
Found at i:37707411 original size:76 final size:78
Alignment explanation
Indices: 37707180--37707621 Score: 489
Period size: 76 Copynumber: 5.6 Consensus size: 78
37707170 GCGACCCAAA
* * * * * *
37707180 GCTCAACTCACCTCTCGAATTATGAGTTGATTTTTTTTGAAAAAAAACATAAATTGAAAAACACC
1 GCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTTG-AAAAATAGA-AATTTAAAAAATACC
* *
37707245 TCGGTGTGTGACCCGAG
62 TCGGCGTGTGACCTGAG
* * * * * *
37707262 GCTCGACTCACTTCTTGGATTATGAGTTGA-TTTTTGAAAAAATAGAAATTTAAAAAATGCATCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAAATAGAAATTTAAAAAATACCTCG
* *
37707326 GCATGTG-TCTGAG
65 GCGTGTGACCTGAG
*
37707339 GTTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAATAGAAATTTAAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAAATAGAAATTTAAAAAATACCTCGG
* *
37707403 CATGTG-TCTGAG
66 CGTGTGACCTGAG
* * ** * *
37707415 GCTCAACTCACCTCTCGTATTATGAGTT-AATTTTAAAAAAATAGAAATTTACAAAATACCTCAG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAAATAGAAATTTAAAAAATACCTCGG
37707479 CGTGTGACCTGAG
66 CGTGTGACCTGAG
* * * *
37707492 GCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAAAAATACCTC
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTTGAAAAATAGAAATT-TAAAAAATACCTC
*
37707557 GGCGTGTGACCCGAG
64 GGCGTGTGACCTGAG
* * *
37707572 ACTCAACTCACCTCTTGCAATATGAGTTGATTTTTTGAAAAATAGAAATT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAAATAGAAATT
37707622 GAAGTATCTA
Statistics
Matches: 311, Mismatches: 44, Indels: 13
0.85 0.12 0.04
Matches are distributed among these distances:
75 1 0.00
76 99 0.32
77 65 0.21
78 19 0.06
79 49 0.16
80 52 0.17
82 26 0.08
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31
Consensus pattern (78 bp):
GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAAATAGAAATTTAAAAAATACCTCGG
CGTGTGACCTGAG
Found at i:37707437 original size:153 final size:156
Alignment explanation
Indices: 37707180--37707621 Score: 516
Period size: 153 Copynumber: 2.8 Consensus size: 156
37707170 GCGACCCAAA
* * * * *
37707180 GCTCAACTCACCTCTCGAATTATGAGTTGATTTTTTTTGAAAAAAAACATAAATTGAAAAACACC
1 GCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTTG-AAAAAAAGA-AATTTAAAAAATACC
* * * *
37707245 TCGGTGTGTGACCCGAGGCTCGACTCACTTCTTGGATTATGAGTTGATTTTTGAAAAAATAGAAA
62 TCGGCGTGTGACCCGAGGCTCAACTCACCTCTTGCATTATGAGTTGATTTTTGAAAAAATAGAAA
* * *
37707310 TTTAAAAAATGCATCGGCATGTG-TCTGAG
127 TTTAAAAAATACATCAGCATGTGACCTGAG
* *
37707339 GTTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAATAGAAATTTAAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAAAAAGAAATTTAAAAAATACCTCGG
* * * * * * *
37707403 CATGTG-TCTGAGGCTCAACTCACCTCTCGTATTATGAGTT-AATTTTAAAAAAATAGAAATTTA
66 CGTGTGACCCGAGGCTCAACTCACCTCTTGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTA
* * *
37707466 CAAAATACCTCAGCGTGTGACCTGAG
131 AAAAATACATCAGCATGTGACCTGAG
* * * *
37707492 GCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAAAAATACCTC
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTTGAAAAAAAGAAATT-TAAAAAATACCTC
* *
37707557 GGCGTGTGACCCGAGACTCAACTCACCTCTTGCAATATGAGTTGATTTTTTG-AAAAATAGAAAT
64 GGCGTGTGACCCGAGGCTCAACTCACCTCTTGCATTATGAGTTGA-TTTTTGAAAAAATAGAAAT
37707621 T
128 T
37707622 GAAGTATCTA
Statistics
Matches: 239, Mismatches: 37, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
152 35 0.15
153 60 0.25
154 20 0.08
155 25 0.10
156 25 0.10
157 28 0.12
158 14 0.06
159 32 0.13
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31
Consensus pattern (156 bp):
GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAAAAAGAAATTTAAAAAATACCTCGG
CGTGTGACCCGAGGCTCAACTCACCTCTTGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTA
AAAAATACATCAGCATGTGACCTGAG
Found at i:37715825 original size:19 final size:19
Alignment explanation
Indices: 37715756--37715873 Score: 86
Period size: 19 Copynumber: 6.2 Consensus size: 19
37715746 GATCTGATTG
* *
37715756 AAACACGATATTTTTTTTA
1 AAACACGAAATTTTTTTGA
*
37715775 AAACACGAGA--TTTTTG-
1 AAACACGAAATTTTTTTGA
*
37715791 AAACACCATAATAATTTTTTGA
1 AAACACGA-AAT--TTTTTTGA
37715813 AAACACGGAAA--TTTTTG-
1 AAACAC-GAAATTTTTTTGA
*
37715830 AAACACGATAATTTTTTTTGG
1 AAACACGA-AA-TTTTTTTGA
*
37715851 AAACACGAAACTTTTTTGA
1 AAACACGAAATTTTTTTGA
37715870 AAAC
1 AAAC
37715874 TTACGAAACA
Statistics
Matches: 80, Mismatches: 7, Indels: 24
0.72 0.06 0.22
Matches are distributed among these distances:
16 9 0.11
17 14 0.17
18 6 0.08
19 20 0.25
20 8 0.10
21 14 0.17
22 8 0.10
23 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.36
Consensus pattern (19 bp):
AAACACGAAATTTTTTTGA
Found at i:37715827 original size:39 final size:37
Alignment explanation
Indices: 37715753--37715871 Score: 134
Period size: 39 Copynumber: 3.2 Consensus size: 37
37715743 CGTGATCTGA
* * *
37715753 TTGAAACACGAT-AT-TTTTTTTAAAACACGAGATTT
1 TTGAAACACCATAATATTTTTTGAAAACACGAAATTT
37715788 TTGAAACACCATAATAATTTTTTGAAAACACGGAAATTT
1 TTGAAACACCATAAT-ATTTTTTGAAAACAC-GAAATTT
* * *
37715827 TTGAAACACGATAATTTTTTTTGGAAACACGAAACTTTT
1 TTGAAACACCATAATATTTTTTGAAAACACGAAA--TTT
37715866 TTGAAA
1 TTGAAA
37715872 ACTTACGAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
35 11 0.15
36 2 0.03
37 4 0.06
38 26 0.36
39 29 0.40
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (37 bp):
TTGAAACACCATAATATTTTTTGAAAACACGAAATTT
Found at i:37715833 original size:17 final size:18
Alignment explanation
Indices: 37715756--37715845 Score: 69
Period size: 17 Copynumber: 4.9 Consensus size: 18
37715746 GATCTGATTG
* *
37715756 AAACACGATATTTTTTTTA
1 AAACACGATA-ATTTTTGA
*
37715775 AAACACGA-GATTTTTGA
1 AAACACGATAATTTTTGA
**
37715792 AACACCATAATAATTTTTTGA
1 AA-A-CACGATAA-TTTTTGA
37715813 AAACACGGA-AATTTTTG-
1 AAACAC-GATAATTTTTGA
37715830 AAACACGATAATTTTT
1 AAACACGATAATTTTT
37715846 TTTGGAAACA
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
16 2 0.04
17 21 0.37
18 7 0.12
19 15 0.26
20 3 0.05
21 9 0.16
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (18 bp):
AAACACGATAATTTTTGA
Found at i:37715921 original size:18 final size:18
Alignment explanation
Indices: 37715900--37715934 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37715890 TTTTTTTAAA
* *
37715900 AAACACGAATATTTTTTG
1 AAACACAAAAATTTTTTG
37715918 AAACACAAAAATTTTTT
1 AAACACAAAAATTTTTT
37715935 TTTTTGAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.11, G:0.06, T:0.37
Consensus pattern (18 bp):
AAACACAAAAATTTTTTG
Found at i:37715937 original size:23 final size:24
Alignment explanation
Indices: 37715911--37715957 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
37715901 AACACGAATA
37715911 TTTTTTGAAACACAA-AA-ATTTTT
1 TTTTTTGAAA-ACAAGAAGATTTTT
37715934 TTTTTTGAAAACAAGAAGATTTTT
1 TTTTTTGAAAACAAGAAGATTTTT
37715958 GAAACACGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 4 0.18
23 12 0.55
24 6 0.27
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (24 bp):
TTTTTTGAAAACAAGAAGATTTTT
Found at i:37715956 original size:42 final size:41
Alignment explanation
Indices: 37715890--37715970 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
37715880 AACACGAGAA
* *
37715890 TTTTTTTAAAAAACACGAATATTTTTTGAAACACAAAAATTT
1 TTTTTTTAAAAAACAAGAAGA-TTTTTGAAACACAAAAATTT
** *
37715932 TTTTTTTTGAAAACAAGAAGATTTTTGAAACACGAAAAT
1 TTTTTTTAAAAAACAAGAAGATTTTTGAAACACAAAAAT
37715971 CTGTGAAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
41 17 0.50
42 17 0.50
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (41 bp):
TTTTTTTAAAAAACAAGAAGATTTTTGAAACACAAAAATTT
Found at i:37716027 original size:37 final size:36
Alignment explanation
Indices: 37715953--37716027 Score: 100
Period size: 35 Copynumber: 2.1 Consensus size: 36
37715943 AACAAGAAGA
**
37715953 TTTTTGAAACACGAAAATCTGTGAAAACATGAATTTT
1 TTTTTGAAACACG-AAATCTGTGAAAACACAAATTTT
37715990 TTTTTGAAACACG-AAT-TGTTGAAAACACAAATTTT
1 TTTTTGAAACACGAAATCTG-TGAAAACACAAATTTT
37716025 TTT
1 TTT
37716028 CTTAAGGACG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 2 0.06
35 20 0.57
37 13 0.37
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.39
Consensus pattern (36 bp):
TTTTTGAAACACGAAATCTGTGAAAACACAAATTTT
Found at i:37716684 original size:25 final size:24
Alignment explanation
Indices: 37716628--37716692 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 24
37716618 CTGGGCCTAT
37716628 TGGGCCTGCTGCTGGAGCTGGGAC
1 TGGGCCTGCTGCTGGAGCTGGGAC
*
37716652 TGGAGCCTGCTGCTGGCGCTGGG-C
1 TGG-GCCTGCTGCTGGAGCTGGGAC
37716676 TGCTGGCCTGCCTGCTG
1 TG--GGCCTG-CTGCTG
37716693 AAACTGGTCT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
24 6 0.17
25 23 0.64
26 7 0.19
ACGTcount: A:0.05, C:0.29, G:0.43, T:0.23
Consensus pattern (24 bp):
TGGGCCTGCTGCTGGAGCTGGGAC
Found at i:37716904 original size:10 final size:11
Alignment explanation
Indices: 37716868--37716939 Score: 60
Period size: 12 Copynumber: 6.5 Consensus size: 11
37716858 CTATTTTATA
* *
37716868 TTTTTTTATTT
1 TTTTTTTCTCT
37716879 TTTTCTTTCTCT
1 TTTT-TTTCTCT
37716891 TTTTTTTC-CT
1 TTTTTTTCTCT
37716901 TTTTTTTCTCT
1 TTTTTTTCTCT
*
37716912 TCTTTCTTCT-T
1 T-TTTTTTCTCT
37716923 TCTTCTTTT-TCT
1 T-TT-TTTTCTCT
37716935 TTTTT
1 TTTTT
37716940 CTCTTCTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
10 12 0.23
11 19 0.37
12 21 0.40
ACGTcount: A:0.01, C:0.18, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTTTCTCT
Done.