Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 138 of 150
Found at i:41584355 original size:67 final size:69
Alignment explanation
Indices: 41584247--41584396 Score: 232
Period size: 67 Copynumber: 2.2 Consensus size: 69
41584237 GGTAACCATC
* * * *
41584247 AGATTCTCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAA-GAAATGAT-GTGAACA
1 AGATTCCCTGCAACAAAATAATGCGTGAACAAGAGAGATTCCCTGCAACAAAATAATAGTGAACA
41584310 GGAG
66 GGAG
*
41584314 AGATTCCCTGCAACAAAATAATGTGTGAACAAGAGAGATTCCCTGCAACAAAATAATACGTGAAC
1 AGATTCCCTGCAACAAAATAATGCGTGAACAAGAGAGATTCCCTGCAACAAAATAATA-GTGAAC
41584379 AGGAG
65 AGGAG
41584384 AGATTCCCTGCAA
1 AGATTCCCTGCAA
41584397 GAAATTTGTA
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
67 45 0.60
68 6 0.08
70 24 0.32
ACGTcount: A:0.40, C:0.19, G:0.22, T:0.19
Consensus pattern (69 bp):
AGATTCCCTGCAACAAAATAATGCGTGAACAAGAGAGATTCCCTGCAACAAAATAATAGTGAACA
GGAG
Found at i:41585118 original size:13 final size:13
Alignment explanation
Indices: 41585083--41585119 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
41585073 GATATATTTG
*
41585083 TAATTTGAAAGCT
1 TAATTTGAAAACT
41585096 TAAGTTTGAAAACT
1 TAA-TTTGAAAACT
41585110 TAATTTGAAA
1 TAATTTGAAA
41585120 TTTTAGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (13 bp):
TAATTTGAAAACT
Found at i:41585422 original size:35 final size:35
Alignment explanation
Indices: 41585378--41585543 Score: 212
Period size: 35 Copynumber: 4.8 Consensus size: 35
41585368 TTCACTTGTC
* * *
41585378 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
* * *
41585413 TTCTGTTGCAGGGAATCTTTCCTGTTCA--CATCA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
* *
41585446 -TTTCTTGCAGGGAATCTCTCCTATTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
* *
41585480 TTTTGTTGTAGGGAATCTCTCCTGTTCACACATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
*
41585515 TTTTGTTGCAGAGAATCTCTCCTGTTCAC
1 TTTTGTTGCAGGGAATCTCTCCTGTTCAC
41585544 ATCATTTCTT
Statistics
Matches: 113, Mismatches: 15, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
32 23 0.20
33 4 0.04
34 4 0.04
35 82 0.73
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.41
Consensus pattern (35 bp):
TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
Found at i:41585487 original size:67 final size:69
Alignment explanation
Indices: 41585378--41585543 Score: 228
Period size: 67 Copynumber: 2.4 Consensus size: 69
41585368 TTCACTTGTC
* * *
41585378 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTCTGTTGCAGGGAATCTTTCCTGTT-CAC
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTCTGTTGCAGGGAATCTCTCCTGTTACAC
41585442 ATCA
66 ATCA
* * *
41585446 -TTTCTTGCAGGGAATCTCTCCTATTCACGCATTATTTTGTTGTAGGGAATCTCTCCTGTTCACA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTCTGTTGCAGGGAATCTCTCCTGTT-ACA
*
41585510 CATTA
65 CATCA
* *
41585515 TTTTGTTGCAGAGAATCTCTCCTGTTCAC
1 TTTTCTTGCAGGGAATCTCTCCTGTTCAC
41585544 ATCATTTCTT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
67 54 0.64
69 6 0.07
70 25 0.29
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.41
Consensus pattern (69 bp):
TTTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTCTGTTGCAGGGAATCTCTCCTGTTACAC
ATCA
Found at i:41588386 original size:20 final size:23
Alignment explanation
Indices: 41588351--41588395 Score: 69
Period size: 20 Copynumber: 2.1 Consensus size: 23
41588341 GAGCAAATCG
41588351 TTGATTCTATTTCTTTTTTG-AT
1 TTGATTCTATTTCTTTTTTGTAT
41588373 TTGA-TCTA-TTCTTTTTTGTAT
1 TTGATTCTATTTCTTTTTTGTAT
41588394 TT
1 TT
41588396 CTCTTTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.45
21 8 0.36
22 4 0.18
ACGTcount: A:0.13, C:0.09, G:0.09, T:0.69
Consensus pattern (23 bp):
TTGATTCTATTTCTTTTTTGTAT
Found at i:41592744 original size:13 final size:13
Alignment explanation
Indices: 41592709--41592745 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
41592699 GATATATTTG
*
41592709 TAATTTGAAAGCT
1 TAATTTGAAAACT
41592722 TAAGTTTGAAAACT
1 TAA-TTTGAAAACT
41592736 TAATTTGAAA
1 TAATTTGAAA
41592746 TTTTGGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (13 bp):
TAATTTGAAAACT
Found at i:41593047 original size:35 final size:35
Alignment explanation
Indices: 41593003--41593178 Score: 241
Period size: 35 Copynumber: 5.1 Consensus size: 35
41592993 TTCACTTGTC
* * * *
41593003 TTTTCTTGCAGGGAATATTTCTTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
* * *
41593038 TTCTGTTGCAGGGAATCTTTCCTGTTCA--CATCA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
*
41593071 -TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
*
41593105 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
*
41593140 TTTTGTTGCAGGGAATCTCTCTTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
41593175 TTTT
1 TTTT
41593179 ATATAAGTAT
Statistics
Matches: 125, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
32 24 0.19
33 4 0.03
34 4 0.03
35 93 0.74
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.43
Consensus pattern (35 bp):
TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
Found at i:41593112 original size:67 final size:69
Alignment explanation
Indices: 41593003--41593178 Score: 266
Period size: 67 Copynumber: 2.6 Consensus size: 69
41592993 TTCACTTGTC
* * * *
41593003 TTTTCTTGCAGGGAATATTTCTTGTTCACGCATTATTCTGTTGCAGGGAATCTTTCCTGTT-CAC
1 TTTTCTTGCAGGGAATCTCTCTTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTACAC
41593067 ATCA
66 ATCA
*
41593071 -TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACA
1 TTTTCTTGCAGGGAATCTCTCTTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTT-ACA
*
41593135 CATTA
65 CATCA
*
41593140 TTTTGTTGCAGGGAATCTCTCTTGTTCACGCATTATTTT
1 TTTTCTTGCAGGGAATCTCTCTTGTTCACGCATTATTTT
41593179 ATATAAGTAT
Statistics
Matches: 97, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
67 55 0.57
69 6 0.06
70 36 0.37
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.43
Consensus pattern (69 bp):
TTTTCTTGCAGGGAATCTCTCTTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTACAC
ATCA
Found at i:41593347 original size:47 final size:47
Alignment explanation
Indices: 41593293--41593757 Score: 795
Period size: 47 Copynumber: 9.9 Consensus size: 47
41593283 GAGTAAATGA
* *
41593293 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
41593340 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
*
41593387 ATGTATATGCTGTCAATTTTTGACGTATAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
* * *
41593434 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAAATATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
*
41593481 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAATCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
**
41593528 ATGTATATGCTGTCAATTTTTGATGTATAAGGGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
*
41593575 ATGTATATGCTGTCAAGTTTTTGACGTATAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAA-TTTTTGATGTATAAATGCAGTCCAATTATAT
* * * *
41593623 ATGTATATGCTGTCAAATTTTGATGTACAAAGGCAGTCCAAATATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
41593670 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
41593717 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAA
1 ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAA
41593758 ATTTTGGTGT
Statistics
Matches: 391, Mismatches: 26, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
47 347 0.89
48 44 0.11
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.40
Consensus pattern (47 bp):
ATGTATATGCTGTCAATTTTTGATGTATAAATGCAGTCCAATTATAT
Found at i:41594088 original size:2 final size:2
Alignment explanation
Indices: 41594081--41594123 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
41594071 GTTATGTGTT
* *
41594081 TA TA TA TA TA TG TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
41594123 T
1 T
41594124 GTGGAATGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:41596394 original size:331 final size:331
Alignment explanation
Indices: 41595792--41596454 Score: 1317
Period size: 331 Copynumber: 2.0 Consensus size: 331
41595782 GAAGAATGTC
41595792 AATAATCTTTTTGAATAGTTAAAGATTTTTTCAACAAAACCTCCTTTGTTAACTTTGCCATCATT
1 AATAATCTTTTTGAATAGTTAAAGATTTTTTCAACAAAACCTCCTTTGTTAACTTTGCCATCATT
41595857 GGGAGACTCATTGTGTTTGTACATGTTGCAAAATTAAATTTAGAAAACGCATCAGAAAATAAATT
66 GGGAGACTCATTGTGTTTGTACATGTTGCAAAATTAAATTTAGAAAACGCATCAGAAAATAAATT
41595922 TAGAGAAAAATTAAAATTTTAAAAAAATAAATAAATAAGAACTTAATTGTGATATCTAAAATAAT
131 TAGAGAAAAATTAAAATTTTAAAAAAATAAATAAATAAGAACTTAATTGTGATATCTAAAATAAT
41595987 AAAAACTTAACCAAAATTGTACATTTTCGATTCGTCTAGGATGAACGCTTTGACCGAGTAATCTT
196 AAAAACTTAACCAAAATTGTACATTTTCGATTCGTCTAGGATGAACGCTTTGACCGAGTAATCTT
41596052 CTCTGCTATCCTCAAACTCACGTCTACCAACTGTGGGTTCATTTCGAATCAGAAATCTTTCACAA
261 CTCTGCTATCCTCAAACTCACGTCTACCAACTGTGGGTTCATTTCGAATCAGAAATCTTTCACAA
41596117 AAGATT
326 AAGATT
41596123 AATAATCTTTTTGAATAGTTAAAGATTTTTTCAACAAAACCTCCTTTGTTAACTTTGCCATCATT
1 AATAATCTTTTTGAATAGTTAAAGATTTTTTCAACAAAACCTCCTTTGTTAACTTTGCCATCATT
*
41596188 GGGAGACTCATTGTGTTTGTACATGTTGTAAAATTAAATTTAGAAAACGCATCAGAAAATAAATT
66 GGGAGACTCATTGTGTTTGTACATGTTGCAAAATTAAATTTAGAAAACGCATCAGAAAATAAATT
41596253 TAGAGAAAAATTAAAATTTTAAAAAAATAAATAAATAAGAACTTAATTGTGATATCTAAAATAAT
131 TAGAGAAAAATTAAAATTTTAAAAAAATAAATAAATAAGAACTTAATTGTGATATCTAAAATAAT
41596318 AAAAACTTAACCAAAATTGTACATTTTCGATTCGTCTAGGATGAACGCTTTGACCGAGTAATCTT
196 AAAAACTTAACCAAAATTGTACATTTTCGATTCGTCTAGGATGAACGCTTTGACCGAGTAATCTT
41596383 CTCTGCTATCCTCAAACTCACGTCTACCAACTGTGGGTTCATTTCGAATCAGAAATCTTTCACAA
261 CTCTGCTATCCTCAAACTCACGTCTACCAACTGTGGGTTCATTTCGAATCAGAAATCTTTCACAA
41596448 AAGATT
326 AAGATT
41596454 A
1 A
41596455 CTTATGGGAT
Statistics
Matches: 331, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
331 331 1.00
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (331 bp):
AATAATCTTTTTGAATAGTTAAAGATTTTTTCAACAAAACCTCCTTTGTTAACTTTGCCATCATT
GGGAGACTCATTGTGTTTGTACATGTTGCAAAATTAAATTTAGAAAACGCATCAGAAAATAAATT
TAGAGAAAAATTAAAATTTTAAAAAAATAAATAAATAAGAACTTAATTGTGATATCTAAAATAAT
AAAAACTTAACCAAAATTGTACATTTTCGATTCGTCTAGGATGAACGCTTTGACCGAGTAATCTT
CTCTGCTATCCTCAAACTCACGTCTACCAACTGTGGGTTCATTTCGAATCAGAAATCTTTCACAA
AAGATT
Found at i:41596980 original size:17 final size:16
Alignment explanation
Indices: 41596955--41596987 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
41596945 TTTTTTGATT
41596955 TTAATATTAATATTAA
1 TTAATATTAATATTAA
41596971 TTAATAATTAATATTAA
1 TTAAT-ATTAATATTAA
41596988 AAAAATTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAATATTAATATTAA
Found at i:41603753 original size:17 final size:18
Alignment explanation
Indices: 41603712--41603745 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
41603702 TAAAAATTGT
41603712 AATAATTATATATTTAAA
1 AATAATTATATATTTAAA
41603730 AATAATTATA-ATTTAA
1 AATAATTATATATTTAA
41603746 TATAAATTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AATAATTATATATTTAAA
Found at i:41603754 original size:44 final size:45
Alignment explanation
Indices: 41603700--41603792 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 45
41603690 CTGAAAGTAA
*
41603700 AATAAAAATTGTAATAATTA-T-ATATTTAAAAATAATTATAATTT
1 AATAAAAATTGTAATAATTATTAACATTTAAAAAT-ATTATAATTT
* *
41603744 AATATAAATTGTGATAATTATTACACATTTAAAAATATTATAATTT
1 AATAAAAATTGTAATAATTATTA-ACATTTAAAAATATTATAATTT
41603790 AAT
1 AAT
41603793 TTACAATTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 18 0.42
45 1 0.02
46 13 0.30
47 11 0.26
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (45 bp):
AATAAAAATTGTAATAATTATTAACATTTAAAAATATTATAATTT
Found at i:41611265 original size:16 final size:16
Alignment explanation
Indices: 41611244--41611276 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
41611234 CATAGTTTCA
41611244 CTTTCGTTTTTTCCTG
1 CTTTCGTTTTTTCCTG
41611260 CTTTCGTTTTTTCCTG
1 CTTTCGTTTTTTCCTG
41611276 C
1 C
41611277 CTTAGTGTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.00, C:0.27, G:0.12, T:0.61
Consensus pattern (16 bp):
CTTTCGTTTTTTCCTG
Found at i:41620575 original size:2 final size:2
Alignment explanation
Indices: 41620568--41620597 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
41620558 GTGTTTTGTG
41620568 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
41620598 AAGGTAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:41623804 original size:21 final size:20
Alignment explanation
Indices: 41623779--41623828 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
41623769 TGTTTTCAGT
* *
41623779 AAATTACTGAATTTTTTAATA
1 AAATTACTAAATCTTTT-ATA
*
41623800 TAATTTACTAAATCTTTTATA
1 -AAATTACTAAATCTTTTATA
41623821 AAATTACT
1 AAATTACT
41623829 TATAGTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 7 0.29
21 3 0.12
22 14 0.58
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (20 bp):
AAATTACTAAATCTTTTATA
Found at i:41624638 original size:15 final size:15
Alignment explanation
Indices: 41624618--41624647 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
41624608 TTGAGTTAGT
41624618 TTTGGATCAAATTAA
1 TTTGGATCAAATTAA
*
41624633 TTTGGATTAAATTAA
1 TTTGGATCAAATTAA
41624648 CTCATGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.03, G:0.13, T:0.43
Consensus pattern (15 bp):
TTTGGATCAAATTAA
Found at i:41624885 original size:2 final size:2
Alignment explanation
Indices: 41624878--41624912 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
41624868 ATTCAAATTA
41624878 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
41624913 AGATTTCATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:41625158 original size:4 final size:4
Alignment explanation
Indices: 41625151--41625177 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
41625141 ATCCTTTCAA
41625151 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
41625178 CTTATCCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:41632282 original size:3 final size:3
Alignment explanation
Indices: 41632274--41632300 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
41632264 AAAACCAATA
41632274 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
41632301 CACAGCAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:41634248 original size:2 final size:2
Alignment explanation
Indices: 41634243--41634279 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
41634233 TTTTGTGTGT
41634243 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
41634280 NNNNNNNNNN
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:41639925 original size:22 final size:22
Alignment explanation
Indices: 41639895--41639946 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
41639885 AAAATAATTT
*
41639895 ATTAGTATTAT-TTAATAATAAA
1 ATTAATATTATGTTAAT-ATAAA
*
41639917 ATTAATATT-TGTTAATATAAT
1 ATTAATATTATGTTAATATAAA
41639938 ATTAA-ATTA
1 ATTAATATTA
41639947 ATATCAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 3 0.12
21 10 0.38
22 13 0.50
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (22 bp):
ATTAATATTATGTTAATATAAA
Found at i:41646311 original size:26 final size:22
Alignment explanation
Indices: 41646254--41646301 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
41646244 ACTTGGATAA
*
41646254 ACGTTAAACATGAGAGCTTAGT
1 ACGTGAAACATGAGAGCTTAGT
41646276 ACGTGAAACATGAGAGCTTAGT
1 ACGTGAAACATGAGAGCTTAGT
41646298 ACGT
1 ACGT
41646302 ACTATCAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (22 bp):
ACGTGAAACATGAGAGCTTAGT
Found at i:41655783 original size:29 final size:30
Alignment explanation
Indices: 41655718--41655791 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
41655708 ACTACAAAAG
* *
41655718 TAGTCACTTTTGTTTGACTCATATTATATTT
1 TAGTCACTTATGTTTGAC-AATATTATATTT
* *
41655749 TAGTCACTTATGTTTGA-AATGTTATGTTT
1 TAGTCACTTATGTTTGACAATATTATATTT
41655778 TAGTCACTTATGTT
1 TAGTCACTTATGTT
41655792 ATTGTTTTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 23 0.59
31 16 0.41
ACGTcount: A:0.23, C:0.11, G:0.14, T:0.53
Consensus pattern (30 bp):
TAGTCACTTATGTTTGACAATATTATATTT
Found at i:41656579 original size:20 final size:20
Alignment explanation
Indices: 41656540--41656631 Score: 57
Period size: 20 Copynumber: 4.6 Consensus size: 20
41656530 AAGATCAGAT
*
41656540 CAAAATATTTAAAGAA-TTAC
1 CAAAAT-TTTTAAGAATTTAC
41656560 CAAAATTTTTAAGAATTTAC
1 CAAAATTTTTAAGAATTTAC
* * *
41656580 TC-ATATTTTTTAG-TTTATAC
1 -CAAAATTTTTAAGAATT-TAC
* *
41656600 CAAAATATTTAAGGATTTA-
1 CAAAATTTTTAAGAATTTAC
*
41656619 TAGAAATTTTTAA
1 CA-AAATTTTTAA
41656632 TGCTTTGCTA
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
19 12 0.21
20 41 0.73
21 3 0.05
ACGTcount: A:0.43, C:0.08, G:0.07, T:0.42
Consensus pattern (20 bp):
CAAAATTTTTAAGAATTTAC
Found at i:41656897 original size:20 final size:20
Alignment explanation
Indices: 41656864--41656920 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
41656854 ATCATGTTAG
41656864 TAAAACATTAGAAATTTTGA
1 TAAAACATTAGAAATTTTGA
* * *
41656884 TAAAATATTGGAAATTTTGG
1 TAAAACATTAGAAATTTTGA
* *
41656904 TAGAACCTTA-AAATTTT
1 TAAAACATTAGAAATTTT
41656921 TGGTAAATCT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 7 0.23
20 23 0.77
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (20 bp):
TAAAACATTAGAAATTTTGA
Found at i:41656921 original size:20 final size:19
Alignment explanation
Indices: 41656898--41656985 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 19
41656888 ATATTGGAAA
*
41656898 TTTTGGTAGAACCTTAAAAT
1 TTTTGGTA-AATCTTAAAAT
* *
41656918 TTTTGGTAAATCTTTAGAT
1 TTTTGGTAAATCTTAAAAT
* *
41656937 ATTTGGTATAATCTTAAAAA
1 TTTTGGTA-AATCTTAAAAT
*
41656957 TTTTGAG-AAATCCTTAAGAGT
1 TTTTG-GTAAAT-CTTAA-AAT
41656978 TTTTGGTA
1 TTTTGGTA
41656986 TGCAAAAAAT
Statistics
Matches: 53, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
19 18 0.34
20 27 0.51
21 8 0.15
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (19 bp):
TTTTGGTAAATCTTAAAAT
Found at i:41656968 original size:39 final size:41
Alignment explanation
Indices: 41656899--41656986 Score: 101
Period size: 39 Copynumber: 2.2 Consensus size: 41
41656889 TATTGGAAAT
* * *
41656899 TTTGGTAGAACCTTAAAATTTTTGGTAAAT-CTTTAGA-TA
1 TTTGGTATAACCTTAAAAATTTTGGTAAATCCTTAAGAGTA
* *
41656938 TTTGGTATAATCTTAAAAATTTTGAG-AAATCCTTAAGAGTT
1 TTTGGTATAACCTTAAAAATTTTG-GTAAATCCTTAAGAGTA
41656979 TTTGGTAT
1 TTTGGTAT
41656987 GCAAAAAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
39 25 0.61
40 7 0.17
41 9 0.22
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (41 bp):
TTTGGTATAACCTTAAAAATTTTGGTAAATCCTTAAGAGTA
Found at i:41657093 original size:20 final size:20
Alignment explanation
Indices: 41657042--41657106 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 20
41657032 TTAGACATAC
*
41657042 TGATAAACCCTTAGAAATTA
1 TGATAAACCCTTAGAAATTT
** *
41657062 TGGCAAAGCCTTAGAAATTT
1 TGATAAACCCTTAGAAATTT
* *
41657082 TGATAAATCCTTAGAAACTT
1 TGATAAACCCTTAGAAATTT
41657102 TGATA
1 TGATA
41657107 TGTCAAAATG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (20 bp):
TGATAAACCCTTAGAAATTT
Found at i:41659910 original size:13 final size:13
Alignment explanation
Indices: 41659892--41659916 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41659882 TTTATCTCTT
41659892 TTTTTTCTTTCTA
1 TTTTTTCTTTCTA
41659905 TTTTTTCTTTCT
1 TTTTTTCTTTCT
41659917 TATTCCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTTCTTTCTA
Found at i:41672013 original size:11 final size:11
Alignment explanation
Indices: 41671972--41672011 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
41671962 ACAATAACAA
41671972 TAAAATAATAG
1 TAAAATAATAG
*
41671983 TAACATAATAG
1 TAAAATAATAG
* *
41671994 TGAAATAGTAG
1 TAAAATAATAG
41672005 TAAAATA
1 TAAAATA
41672012 GTGAGAAAAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.57, C:0.03, G:0.12, T:0.28
Consensus pattern (11 bp):
TAAAATAATAG
Found at i:41672036 original size:11 final size:11
Alignment explanation
Indices: 41672015--41672052 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
41672005 TAAAATAGTG
41672015 AGAAAACAGCA
1 AGAAAACAGCA
*
41672026 AGAAAATAGCA
1 AGAAAACAGCA
*
41672037 ACAAAACAGCA
1 AGAAAACAGCA
41672048 A-AAAA
1 AGAAAA
41672053 TAACATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 4 0.17
11 20 0.83
ACGTcount: A:0.68, C:0.16, G:0.13, T:0.03
Consensus pattern (11 bp):
AGAAAACAGCA
Found at i:41672900 original size:21 final size:22
Alignment explanation
Indices: 41672870--41672914 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
41672860 TGTATTTTTA
* *
41672870 TATGTTTTTTAAT-TTAAATTT
1 TATGTATTTTAATAATAAATTT
*
41672891 TATGTATTTTTATAATAAATTT
1 TATGTATTTTAATAATAAATTT
41672913 TA
1 TA
41672915 AGTTTTTGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (22 bp):
TATGTATTTTAATAATAAATTT
Found at i:41675106 original size:23 final size:24
Alignment explanation
Indices: 41675062--41675107 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
41675052 TTTCTCACAT
* **
41675062 TTTCAATTCAATCATTTTTCCACC
1 TTTCAATTCAATAATTAATCCACC
41675086 TTTCAA-TCAATAATTAATCCAC
1 TTTCAATTCAATAATTAATCCAC
41675108 AAATTCACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (24 bp):
TTTCAATTCAATAATTAATCCACC
Found at i:41676028 original size:16 final size:16
Alignment explanation
Indices: 41676009--41676039 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
41675999 TTAACTACTA
*
41676009 TAATATTATAATAATG
1 TAATATAATAATAATG
41676025 TAATATAATAATAAT
1 TAATATAATAATAAT
41676040 AATTTCTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
TAATATAATAATAATG
Found at i:41676198 original size:47 final size:47
Alignment explanation
Indices: 41676140--41676232 Score: 120
Period size: 47 Copynumber: 2.0 Consensus size: 47
41676130 TTTGTCAAAA
* *
41676140 TATTTATTTATTTTATATAATAATATA-ATATA-ATATA-ATAAATATAT
1 TATTTACTTA-TTTAT-TAAGAATATATATATATATATATAT-AATATAT
41676187 TATTTACTTATTTATTAAGAATATATATATATATATATATAATATA
1 TATTTACTTATTTATTAAGAATATATATATATATATATATAATATA
41676233 CATATTTTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
45 9 0.22
46 10 0.24
47 20 0.49
48 2 0.05
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (47 bp):
TATTTACTTATTTATTAAGAATATATATATATATATATATAATATAT
Found at i:41680069 original size:14 final size:13
Alignment explanation
Indices: 41680040--41680065 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
41680030 AATAAACACA
41680040 AAAAAAATATTTT
1 AAAAAAATATTTT
41680053 AAAAAAATATTTT
1 AAAAAAATATTTT
41680066 TAAAGTATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAAAAAATATTTT
Found at i:41680798 original size:22 final size:22
Alignment explanation
Indices: 41680783--41680841 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 22
41680773 TTTTCACTGT
41680783 TGTTTT-CTATTGTTTTACTAC
1 TGTTTTGCTATTGTTTTACTAC
* *
41680804 TGTTTTGCTATT-ATTTCCTAC
1 TGTTTTGCTATTGTTTTACTAC
** *
41680825 CATTTTGATATTGTTTT
1 TGTTTTGCTATTGTTTT
41680842 GCTATTATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
21 22 0.73
22 8 0.27
ACGTcount: A:0.15, C:0.14, G:0.10, T:0.61
Consensus pattern (22 bp):
TGTTTTGCTATTGTTTTACTAC
Found at i:41687169 original size:21 final size:21
Alignment explanation
Indices: 41687143--41687182 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
41687133 AAATATAATT
*
41687143 TAAATATTTAA-ATTGAATTTA
1 TAAATAATTAATATT-AATTTA
41687164 TAAATAATTAATATTAATT
1 TAAATAATTAATATTAATT
41687183 ATTTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (21 bp):
TAAATAATTAATATTAATTTA
Found at i:41689559 original size:12 final size:12
Alignment explanation
Indices: 41689544--41689569 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
41689534 AATTAATGAA
41689544 GTTGTTAAAACT
1 GTTGTTAAAACT
41689556 GTTGTTAAAACT
1 GTTGTTAAAACT
41689568 GT
1 GT
41689570 AACTAGTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (12 bp):
GTTGTTAAAACT
Found at i:41694786 original size:21 final size:21
Alignment explanation
Indices: 41694762--41694808 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
41694752 ATTACTAATA
*
41694762 CTCACCCTACAACACCTGA-TT
1 CTCAACCTACAACACCT-ACTT
41694783 CTCAACCTACAACACCTACTT
1 CTCAACCTACAACACCTACTT
41694804 CTCAA
1 CTCAA
41694809 TTTAACTCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.32, C:0.43, G:0.02, T:0.23
Consensus pattern (21 bp):
CTCAACCTACAACACCTACTT
Found at i:41698969 original size:3 final size:3
Alignment explanation
Indices: 41698961--41699006 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
41698951 GATGAGTTTT
41698961 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
41699007 ATATACTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:41703106 original size:74 final size:74
Alignment explanation
Indices: 41703022--41703179 Score: 264
Period size: 74 Copynumber: 2.1 Consensus size: 74
41703012 CTATGATGAA
* * *
41703022 TCTTATTATTTGATTTCTGATTTACGCGATAAATACTTGATTCTTATTCTCAATTATTTATGCTT
1 TCTTATTATTTGATTTCTGATTTACGCGATAAATAATTGATTCTTATCCTCAATTATGTATGCTT
41703087 ATTTCTTGT
66 ATTTCTTGT
*
41703096 TCTTATTATTTGATTTCTGATTTACGCGATAAATAATTGATTCTTGTCCTCAATTATGTATGCTT
1 TCTTATTATTTGATTTCTGATTTACGCGATAAATAATTGATTCTTATCCTCAATTATGTATGCTT
41703161 ATTTCTTGT
66 ATTTCTTGT
*
41703170 T-TTAATATTT
1 TCTTATTATTT
41703180 TTGAGATATT
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
73 8 0.10
74 71 0.90
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.54
Consensus pattern (74 bp):
TCTTATTATTTGATTTCTGATTTACGCGATAAATAATTGATTCTTATCCTCAATTATGTATGCTT
ATTTCTTGT
Found at i:41707090 original size:13 final size:13
Alignment explanation
Indices: 41707072--41707097 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
41707062 ATAAATATAT
41707072 TTTTTTATTTTTA
1 TTTTTTATTTTTA
41707085 TTTTTTATTTTTA
1 TTTTTTATTTTTA
41707098 AAATACTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:41713218 original size:15 final size:15
Alignment explanation
Indices: 41713195--41713224 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
41713185 GTGAAGAGAA
41713195 ATATCTGAAATAATG
1 ATATCTGAAATAATG
*
41713210 ATATGTGAAATAATG
1 ATATCTGAAATAATG
41713225 TACAGATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.17, T:0.33
Consensus pattern (15 bp):
ATATCTGAAATAATG
Found at i:41713831 original size:27 final size:26
Alignment explanation
Indices: 41713801--41713858 Score: 91
Period size: 25 Copynumber: 2.2 Consensus size: 26
41713791 TTAAGGAACC
*
41713801 TTAGTGCGCTCTCTGATTATTAGCACG
1 TTAGTG-GCTCTCTGATTATTAGCACA
41713828 TTAGT-GCTCTCTGATTATTAGCACA
1 TTAGTGGCTCTCTGATTATTAGCACA
41713853 TTAGTG
1 TTAGTG
41713859 TTCATCGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 24 0.83
27 5 0.17
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (26 bp):
TTAGTGGCTCTCTGATTATTAGCACA
Found at i:41713869 original size:25 final size:25
Alignment explanation
Indices: 41713808--41713858 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
41713798 ACCTTAGTGC
*
41713808 GCTCTCTGATTATTAGCACGTTAGT
1 GCTCTCTGATTATTAGCACATTAGT
41713833 GCTCTCTGATTATTAGCACATTAGT
1 GCTCTCTGATTATTAGCACATTAGT
41713858 G
1 G
41713859 TTCATCGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACATTAGT
Found at i:41714997 original size:9 final size:9
Alignment explanation
Indices: 41714983--41715022 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
41714973 GTAGTGATTC
41714983 AATTCGGTT
1 AATTCGGTT
*
41714992 AATTCGGGT
1 AATTCGGTT
*
41715001 AATTCAGTT
1 AATTCGGTT
41715010 AATTCGGTT
1 AATTCGGTT
41715019 AATT
1 AATT
41715023 TTTAACCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (9 bp):
AATTCGGTT
Found at i:41715568 original size:18 final size:18
Alignment explanation
Indices: 41715526--41715569 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
41715516 GAATACTTTT
41715526 CAAAAATACTTTTGGAAA
1 CAAAAATACTTTTGGAAA
41715544 -AAGAAATCACTTTT-GAAA
1 CAA-AAAT-ACTTTTGGAAA
41715562 CAAAAATA
1 CAAAAATA
41715570 TTTCTAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
17 3 0.13
18 12 0.52
19 8 0.35
ACGTcount: A:0.55, C:0.11, G:0.09, T:0.25
Consensus pattern (18 bp):
CAAAAATACTTTTGGAAA
Found at i:41725345 original size:3 final size:3
Alignment explanation
Indices: 41725337--41725366 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
41725327 CACACATACA
41725337 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
41725367 CAACAATCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:41725530 original size:21 final size:21
Alignment explanation
Indices: 41725462--41725533 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
41725452 TTCCTTCAAA
*
41725462 TATATTTTAATTACAATTAGT
1 TATATTTTAATTAAAATTAGT
* * ** **
41725483 TAAACTTTAATTGTCGAATTAAA
1 TATATTTTAA-T-TAAAATTAGT
41725506 TATATTTTAATTAAAATTAGT
1 TATATTTTAATTAAAATTAGT
41725527 TATATTT
1 TATATTT
41725534 AACTGTAGAA
Statistics
Matches: 37, Mismatches: 12, Indels: 4
0.70 0.23 0.08
Matches are distributed among these distances:
21 21 0.57
22 2 0.05
23 14 0.38
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (21 bp):
TATATTTTAATTAAAATTAGT
Found at i:41725549 original size:43 final size:44
Alignment explanation
Indices: 41725459--41725549 Score: 139
Period size: 44 Copynumber: 2.1 Consensus size: 44
41725449 GTTTTCCTTC
* * *
41725459 AAATATATTTTAATTACAATTAGTTAAACTTTAATTGTCGAATT
1 AAATATATTTTAATTAAAATTAGTTAAACTTTAACTGTAGAATT
*
41725503 AAATATATTTTAATTAAAATTAGTTATA-TTTAACTGTAGAATT
1 AAATATATTTTAATTAAAATTAGTTAAACTTTAACTGTAGAATT
41725546 AAAT
1 AAAT
41725550 TTTTAGATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
43 17 0.40
44 26 0.60
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.45
Consensus pattern (44 bp):
AAATATATTTTAATTAAAATTAGTTAAACTTTAACTGTAGAATT
Found at i:41730238 original size:31 final size:31
Alignment explanation
Indices: 41730203--41730261 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
41730193 CAATCCAATG
41730203 ACTTAAATAAAAATTTTTAAATAGTTCAGTA
1 ACTTAAATAAAAATTTTTAAATAGTTCAGTA
* * *
41730234 ACTTAAATGAAAATTTTTGAATATTTCA
1 ACTTAAATAAAAATTTTTAAATAGTTCA
41730262 ATGACCAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.41
Consensus pattern (31 bp):
ACTTAAATAAAAATTTTTAAATAGTTCAGTA
Found at i:41746331 original size:4 final size:4
Alignment explanation
Indices: 41746322--41746365 Score: 88
Period size: 4 Copynumber: 11.0 Consensus size: 4
41746312 TCAGTTATGC
41746322 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
41746366 AAGATTGATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
TACA
Found at i:41752707 original size:10 final size:10
Alignment explanation
Indices: 41752687--41752748 Score: 54
Period size: 10 Copynumber: 5.9 Consensus size: 10
41752677 GCCCATTTTT
41752687 ATTTT-AAAA
1 ATTTTAAAAA
41752696 ATTTTAAAAA
1 ATTTTAAAAA
**
41752706 ATTAAAAAAA
1 ATTTTAAAAA
41752716 GTATTTTAAAAA
1 --ATTTTAAAAA
*
41752728 TATTTTTAAAAT
1 -A-TTTTAAAAA
41752740 ATTTTAAAA
1 ATTTTAAAA
41752749 TTAAAAAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
9 5 0.11
10 20 0.45
11 3 0.07
12 16 0.36
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (10 bp):
ATTTTAAAAA
Found at i:41752726 original size:11 final size:10
Alignment explanation
Indices: 41752712--41752820 Score: 62
Period size: 10 Copynumber: 10.5 Consensus size: 10
41752702 AAAAATTAAA
41752712 AAAAGTATTTT
1 AAAA-TATTTT
41752723 AAAAATATTTTT
1 -AAAATA-TTTT
41752735 AAAATATTTT
1 AAAATATTTT
**
41752745 -AAA-ATTAA
1 AAAATATTTT
* **
41752753 AAAAAATTAA
1 AAAATATTTT
41752763 AAAAGTATTTTT
1 AAAA-TA-TTTT
41752775 AAAATATTTT
1 AAAATATTTT
***
41752785 AAAAT-TAAA
1 AAAATATTTT
41752794 AAAAGTATTTT
1 AAAA-TATTTT
41752805 AAAAATATTTT
1 -AAAATATTTT
41752816 AAAAT
1 AAAAT
41752821 TTAAAAAAAT
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
8 3 0.04
9 11 0.14
10 28 0.36
11 18 0.23
12 18 0.23
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (10 bp):
AAAATATTTT
Found at i:41752758 original size:31 final size:31
Alignment explanation
Indices: 41752723--41752830 Score: 99
Period size: 31 Copynumber: 3.2 Consensus size: 31
41752713 AAAGTATTTT
41752723 AAAAATATTTTTAAAATATTTTAAAATTAAA
1 AAAAATATTTTTAAAATATTTTAAAATTAAA
*
41752754 AAAAATTAAAAAAGTATTTTTAAAATATTTTAAAATTAAA
1 AAAAA-T-----A-T-TTTTAAAA-TATTTTAAAATTAAA
* * *
41752794 AAAAGTATTTTAAAAATATTTTAAAATTTAA
1 AAAAATATTTTTAAAATATTTTAAAATTAAA
41752825 AAAAAT
1 AAAAAT
41752831 TAAAAAAAGT
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
31 24 0.39
32 7 0.11
33 1 0.02
34 1 0.02
37 1 0.02
38 1 0.02
39 8 0.13
40 19 0.31
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (31 bp):
AAAAATATTTTTAAAATATTTTAAAATTAAA
Found at i:41752789 original size:82 final size:82
Alignment explanation
Indices: 41752686--41752861 Score: 245
Period size: 82 Copynumber: 2.1 Consensus size: 82
41752676 GGCCCATTTT
**
41752686 TATTTTAAAA-ATTTTAAAAAATTAAAAAAAGTATTTTAAAAATATTTTTAAAATATT-TTAAAA
1 TATTTTAAAATATTTT-AAAAATTAAAAAAAGTATTTTAAAAATA-TTTTAAAAT-TTAAAAAAA
41752749 TTAAAAAAA-AT-TAAAAAA
63 TTAAAAAAAGATGTAAAAAA
41752767 GTATTTTTAAAATATTTT-AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTTAAAAAAAT
1 -TA-TTTTAAAATATTTTAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTTAAAAAAAT
41752831 TAAAAAAAGTATGTAAAAAA
64 TAAAAAAAG-ATGTAAAAAA
41752851 TATTTTAAAAT
1 TATTTTAAAAT
41752862 TAAAAAAATA
Statistics
Matches: 86, Mismatches: 2, Indels: 12
0.86 0.02 0.12
Matches are distributed among these distances:
80 2 0.02
81 22 0.26
82 38 0.44
83 12 0.14
84 12 0.14
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.39
Consensus pattern (82 bp):
TATTTTAAAATATTTTAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTTAAAAAAATTA
AAAAAAGATGTAAAAAA
Found at i:41752809 original size:51 final size:53
Alignment explanation
Indices: 41752692--41752810 Score: 122
Period size: 51 Copynumber: 2.3 Consensus size: 53
41752682 TTTTTATTTT
* **
41752692 AAAAAT-TTTAAAAAATTAAAAAAAGTATTTTAAAAATATTTTTAAAATATTT
1 AAAAATATTTTAAAAATTAAAAAAAGTATTTTAAAAATATTTTTAAAATATAA
* *** *
41752744 TAAAAT-TAAAAAAAATT-AAAAAAGTATTTTTAAAATA-TTTTAAAAT-TAA
1 AAAAATATTTTAAAAATTAAAAAAAGTATTTTAAAAATATTTTTAAAATATAA
41752793 AAAAAGTATTTTAAAAAT
1 AAAAA-TATTTTAAAAAT
41752811 ATTTTAAAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
49 5 0.09
50 10 0.18
51 26 0.47
52 14 0.25
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (53 bp):
AAAAATATTTTAAAAATTAAAAAAAGTATTTTAAAAATATTTTTAAAATATAA
Found at i:41752825 original size:32 final size:31
Alignment explanation
Indices: 41752755--41752829 Score: 125
Period size: 31 Copynumber: 2.4 Consensus size: 31
41752745 AAAATTAAAA
*
41752755 AAAATT-AAAAAAGTATTTTTAAAATATTTT
1 AAAATTAAAAAAAGTATTTTAAAAATATTTT
41752785 AAAATTAAAAAAAGTATTTTAAAAATATTTT
1 AAAATTAAAAAAAGTATTTTAAAAATATTTT
41752816 AAAATTTAAAAAAA
1 AAAA-TTAAAAAAA
41752830 TTAAAAAAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
30 6 0.14
31 27 0.64
32 9 0.21
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (31 bp):
AAAATTAAAAAAAGTATTTTAAAAATATTTT
Found at i:41752865 original size:40 final size:41
Alignment explanation
Indices: 41752686--41752870 Score: 184
Period size: 41 Copynumber: 4.5 Consensus size: 41
41752676 GGCCCATTTT
*
41752686 TATTTTAAAAATTTTAAAAAATTAAAAAAAGTATTT-TAAAAA
1 TATTTT-AAAA-TTTAAAAAATTAAAAAAAGTATTTAAAAAAA
** *
41752728 TATTTTTAAAATATTTTAAAATTAAAAAAA--A-TTAAAAAAG
1 TA-TTTTAAAAT-TTAAAAAATTAAAAAAAGTATTTAAAAAAA
** *
41752768 TATTTTTAAAATATTTTAAAATTAAAAAAAGTATTT-TAAAAA
1 TA-TTTTAAAAT-TTAAAAAATTAAAAAAAGTATTTAAAAAAA
*
41752810 TATTTTAAAATTTAAAAAAATTAAAAAAAGTATGT-AAAAAA
1 TATTTTAAAATTT-AAAAAATTAAAAAAAGTATTTAAAAAAA
*
41752851 TATTTTAAAATTAAAAAAAT
1 TATTTTAAAATTTAAAAAAT
41752871 ATATATATAT
Statistics
Matches: 125, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
39 2 0.02
40 44 0.35
41 45 0.36
42 28 0.22
43 6 0.05
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (41 bp):
TATTTTAAAATTTAAAAAATTAAAAAAAGTATTTAAAAAAA
Found at i:41755412 original size:25 final size:25
Alignment explanation
Indices: 41755384--41755436 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
41755374 ATACATCATA
* *
41755384 GCTCACTTGAGCTTCCTGATACTTG
1 GCTCACATGAGCTTCCCGATACTTG
* *
41755409 GCTCTCATGAGCTTCCCGATATTTG
1 GCTCACATGAGCTTCCCGATACTTG
41755434 GCT
1 GCT
41755437 TGTAAGAGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.15, C:0.28, G:0.21, T:0.36
Consensus pattern (25 bp):
GCTCACATGAGCTTCCCGATACTTG
Found at i:41755445 original size:25 final size:25
Alignment explanation
Indices: 41755417--41755524 Score: 76
Period size: 25 Copynumber: 4.4 Consensus size: 25
41755407 TGGCTCTCAT
* *
41755417 GAGCTTCCCGATATTTGGCTTGTAA
1 GAGCTTCCCGATATATAGCTTGTAA
* * *
41755442 GAGCTTCCCAATATACAGCTTGTAT
1 GAGCTTCCCGATATATAGCTTGTAA
* * *** *
41755467 GAGCTTTCCGTTACT-TAGCTCACAT
1 GAGCTTCCCGATA-TATAGCTTGTAA
* *
41755492 GAGCTTCCCG-TATATGGCTTGGAA
1 GAGCTTCCCGATATATAGCTTGTAA
41755516 GAGCTTCCC
1 GAGCTTCCC
41755525 ATTTACATGC
Statistics
Matches: 63, Mismatches: 18, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
23 1 0.02
24 16 0.25
25 45 0.71
26 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (25 bp):
GAGCTTCCCGATATATAGCTTGTAA
Found at i:41760551 original size:26 final size:25
Alignment explanation
Indices: 41760516--41760574 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 25
41760506 TATTTTCTAA
*
41760516 TTTTTGCATAACTTTC-TTTTCTTTT
1 TTTTTTCAT-ACTTTCATTTTCTTTT
*
41760541 CTTTTTTCATATTTTCATTTTCTTTT
1 -TTTTTTCATACTTTCATTTTCTTTT
41760567 TTTTTTCA
1 TTTTTTCA
41760575 AAAATTGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 13 0.43
26 17 0.57
ACGTcount: A:0.12, C:0.15, G:0.02, T:0.71
Consensus pattern (25 bp):
TTTTTTCATACTTTCATTTTCTTTT
Found at i:41760779 original size:13 final size:13
Alignment explanation
Indices: 41760727--41760792 Score: 80
Period size: 13 Copynumber: 5.1 Consensus size: 13
41760717 AGTTATTCAT
*
41760727 TGCTTTTGAAAAA
1 TGCTTTTGAAAAG
*
41760740 TTCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
41760753 TG-TTGTGAAAAAG
1 TGCTTTTG-AAAAG
*
41760766 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
41760779 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
41760792 T
1 T
41760793 TTGGTTTAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
12 4 0.09
13 36 0.82
14 4 0.09
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:41761038 original size:24 final size:24
Alignment explanation
Indices: 41760983--41761038 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
41760973 TTAATATATG
* *
41760983 AAATATAAATTTTAAATATTTTTA
1 AAATATAAATGTTAAATATTTATA
* *
41761007 AGCA-ATAAATGTTAATTATTTATA
1 A-AATATAAATGTTAAATATTTATA
41761031 AAATATAA
1 AAATATAA
41761039 TTAGAATATA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
23 1 0.04
24 23 0.92
25 1 0.04
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.43
Consensus pattern (24 bp):
AAATATAAATGTTAAATATTTATA
Found at i:41769070 original size:46 final size:46
Alignment explanation
Indices: 41769001--41769281 Score: 336
Period size: 46 Copynumber: 6.6 Consensus size: 46
41768991 TACGTATGAT
* *
41769001 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
41769045 CACTTATTACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
41769091 CACTTATCACTTTGTCACTTGATCAGATAA--GT-G-T--AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
41769127 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
41769173 CATTTATCACTTTGTCTCTTGATCAGATAA--GT-GC---AG-T--
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
41769210 -ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
41769255 CACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
41769282 AGTACTCAAA
Statistics
Matches: 203, Mismatches: 12, Indels: 42
0.79 0.05 0.16
Matches are distributed among these distances:
36 56 0.28
38 4 0.02
39 4 0.02
40 5 0.02
42 5 0.02
43 4 0.02
44 13 0.06
45 5 0.02
46 107 0.53
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:41769132 original size:36 final size:36
Alignment explanation
Indices: 41769091--41769245 Score: 184
Period size: 36 Copynumber: 4.0 Consensus size: 36
41769081 CTAAAGCTAC
41769091 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
*
41769127 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAG
1 CACTTATCACTTTGTCACTTGATCAGATAA--GT-G-T--AG
* *
41769169 CTACCATTTATCACTTTGTCTCTTGATCAGATAAGTGCAG
1 C-A-C--TTATCACTTTGTCACTTGATCAGATAAGTGTAG
*
41769209 TACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
41769245 C
1 C
41769246 TAAAGCTACC
Statistics
Matches: 101, Mismatches: 8, Indels: 20
0.78 0.06 0.16
Matches are distributed among these distances:
36 60 0.59
38 3 0.03
39 2 0.02
40 3 0.03
42 3 0.03
43 2 0.02
44 3 0.03
46 25 0.25
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
Found at i:41769182 original size:82 final size:82
Alignment explanation
Indices: 41769045--41769281 Score: 411
Period size: 82 Copynumber: 2.9 Consensus size: 82
41769035 CTAAGGCTAC
* *
41769045 CACTTATTACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
*
41769110 TGATCAGATAAGTGTAG
66 TGATCAGATAAGTGCAG
* *
41769127 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCATTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
41769192 TGATCAGATAAGTGCAG
66 TGATCAGATAAGTGCAG
* *
41769209 TACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
41769274 TGATCAGA
66 TGATCAGA
41769282 AGTACTCAAA
Statistics
Matches: 146, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 146 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (82 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
TGATCAGATAAGTGCAG
Found at i:41773541 original size:23 final size:23
Alignment explanation
Indices: 41773513--41773556 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
41773503 CTTTCTTACT
*
41773513 GTAGTAATTTTTGGGATATTATA
1 GTAGTAATTTTCGGGATATTATA
*
41773536 GTAGTAATTTTCGGGGTATTA
1 GTAGTAATTTTCGGGATATTA
41773557 CAGGGGGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.45
Consensus pattern (23 bp):
GTAGTAATTTTCGGGATATTATA
Found at i:41786367 original size:29 final size:31
Alignment explanation
Indices: 41786328--41786392 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 31
41786318 TAATCTATAT
*
41786328 TTTTATAATTTTTA-AATAAGT-AAATTA-AA
1 TTTTATAATTTTTAGAA-AAGTCAAAATACAA
*
41786357 TTTTATTATTTTTAGAAAAGTCAAAATACAA
1 TTTTATAATTTTTAGAAAAGTCAAAATACAA
41786388 TTTTA
1 TTTTA
41786393 CTTTTAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 17 0.55
30 7 0.23
31 7 0.23
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.48
Consensus pattern (31 bp):
TTTTATAATTTTTAGAAAAGTCAAAATACAA
Found at i:41788301 original size:10 final size:10
Alignment explanation
Indices: 41788282--41788336 Score: 51
Period size: 11 Copynumber: 5.3 Consensus size: 10
41788272 CAACAACAAC
41788282 AAAAGTAAAGA
1 AAAAG-AAAGA
41788293 AAAAGAAAG-
1 AAAAGAAAGA
41788302 AAAAGAAGAGA
1 AAAAGAA-AGA
*
41788313 AAAGGAAAGGA
1 AAAAGAAA-GA
41788324 AAAA-AAATGA
1 AAAAGAAA-GA
41788334 AAA
1 AAA
41788337 CCTAAACTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
9 7 0.18
10 15 0.39
11 16 0.42
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.04
Consensus pattern (10 bp):
AAAAGAAAGA
Found at i:41789135 original size:66 final size:66
Alignment explanation
Indices: 41789029--41789163 Score: 261
Period size: 66 Copynumber: 2.0 Consensus size: 66
41789019 CTTGAAAATA
*
41789029 AGCTCCTCGAGTGTATTAGAGAGTCTAATTTGATGTATCAAATTACGGTAGATCAATAAGAAGCA
1 AGCTCCTCGAGTGTATTAGAGAGTCTAATTTGACGTATCAAATTACGGTAGATCAATAAGAAGCA
41789094 T
66 T
41789095 AGCTCCTCGAGTGTATTAGAGAGTCTAATTTGACGTATCAAATTACGGTAGATCAATAAGAAGCA
1 AGCTCCTCGAGTGTATTAGAGAGTCTAATTTGACGTATCAAATTACGGTAGATCAATAAGAAGCA
41789160 T
66 T
41789161 AGC
1 AGC
41789164 GATAAGATGA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 68 1.00
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (66 bp):
AGCTCCTCGAGTGTATTAGAGAGTCTAATTTGACGTATCAAATTACGGTAGATCAATAAGAAGCA
T
Found at i:41793434 original size:66 final size:65
Alignment explanation
Indices: 41793345--41793479 Score: 216
Period size: 66 Copynumber: 2.1 Consensus size: 65
41793335 AGCCTTACTC
* *
41793345 TAAAACCTGCTTTGAAAAGGCTTATAAACATATTGAAAGGTCTTGGGAGTACTAAAAAAATCTTT
1 TAAAACCTACTTTGAAAAGGCTTATAAACATATTGAAAGATCTTGGGAGTACTAAAAAAAT-TTT
41793410 A
65 A
* * *
41793411 TAAATCCTACTTTGAAAAGGCTTATAATCATATTGAAAGATCTTGGGAGTACTCAAAAAATTTTA
1 TAAAACCTACTTTGAAAAGGCTTATAAACATATTGAAAGATCTTGGGAGTACTAAAAAAATTTTA
41793476 TAAA
1 TAAA
41793480 GATTCAAGGC
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
65 8 0.12
66 56 0.88
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (65 bp):
TAAAACCTACTTTGAAAAGGCTTATAAACATATTGAAAGATCTTGGGAGTACTAAAAAAATTTTA
Found at i:41798388 original size:31 final size:32
Alignment explanation
Indices: 41798334--41798425 Score: 100
Period size: 31 Copynumber: 2.8 Consensus size: 32
41798324 AGGAGAAGAA
*
41798334 AGAAAGAAAAAGAAAAAGAAAGAAAAGGAA-AGG
1 AGAAGGAAAAA-AAAAAGAAAGAAAA-GAAGAGG
41798367 AGAAGGAAAAAAAAAAG-AAGAAGAAGAAGAGG
1 AGAAGGAAAAAAAAAAGAAAGAA-AAGAAGAGG
41798399 -GAAGGAAGGAAAAAGAAAGAAAGAAAA
1 AGAAGGAA--AAAAA-AAAGAAAGAAAA
41798426 TGTGATTTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 11
0.81 0.02 0.17
Matches are distributed among these distances:
31 15 0.29
32 11 0.21
33 15 0.29
34 6 0.12
35 5 0.10
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (32 bp):
AGAAGGAAAAAAAAAAGAAAGAAAAGAAGAGG
Found at i:41798394 original size:37 final size:39
Alignment explanation
Indices: 41798320--41798425 Score: 121
Period size: 38 Copynumber: 2.7 Consensus size: 39
41798310 TCGATGGGAG
*
41798320 GGAAAGGAGAAGAAAGAAAGAAAAAGAAAAAGAAAGAAAA
1 GGAAAGGAGAAGGAA-AAAGAAAAAGAAAAAGAAAGAAAA
* *
41798360 GGAAAGGAGAAGGAAAAA-AAAAAGAAGAAG-AAGAAGA
1 GGAAAGGAGAAGGAAAAAGAAAAAGAAAAAGAAAGAAAA
*
41798397 GGGAA-G-GAAGGAAAAAGAAAGAAAGAAAA
1 GGAAAGGAGAAGGAAAAAG-AA-AAAGAAAA
41798426 TGTGATTTTT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
35 10 0.17
36 1 0.02
37 12 0.21
38 18 0.31
39 3 0.05
40 14 0.24
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (39 bp):
GGAAAGGAGAAGGAAAAAGAAAAAGAAAAAGAAAGAAAA
Found at i:41798407 original size:35 final size:38
Alignment explanation
Indices: 41798320--41798420 Score: 111
Period size: 40 Copynumber: 2.7 Consensus size: 38
41798310 TCGATGGGAG
*
41798320 GGAAAGGAGAAGAAAGAAAGAAAAAGAAAAAGAAAGAAAA
1 GGAAAGGAGAAGGAA-AAA-AAAAAGAAAAAGAAAGAAAA
* *
41798360 GGAAAGGAGAAGGAAAAAAAAAAGAAGAAG-AAGAAGA
1 GGAAAGGAGAAGGAAAAAAAAAAGAAAAAGAAAGAAAA
* *
41798397 GGGAA-G-GAAGG-AAAAAGAAAGAAA
1 GGAAAGGAGAAGGAAAAAAAAAAGAAA
41798421 GAAAATGTGA
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
34 11 0.20
35 5 0.09
36 1 0.02
37 10 0.18
38 11 0.20
39 3 0.05
40 14 0.25
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (38 bp):
GGAAAGGAGAAGGAAAAAAAAAAGAAAAAGAAAGAAAA
Found at i:41798978 original size:15 final size:16
Alignment explanation
Indices: 41798958--41798987 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
41798948 GTACTGAAAT
41798958 AATAT-AAAATAATAA
1 AATATAAAAATAATAA
41798973 AATATAAAAATAATA
1 AATATAAAAATAATA
41798988 TATTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AATATAAAAATAATAA
Found at i:41799217 original size:155 final size:154
Alignment explanation
Indices: 41798750--41799217 Score: 580
Period size: 155 Copynumber: 3.0 Consensus size: 154
41798740 AAAAATGGTA
*
41798750 TATTTAAAAAACACACTAAATTGATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
1 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
*
41798815 AAATTAGAAAATATGATA-TTTT-TT-AAAGTAATAAAATACGGAGAAAA-AGTACGAACAAAGG
66 AAATTAGAAAATATGATATTTTTATTGAAAGTAATAAAATTCGG-GAAAATAGTACGAACAAAGG
* **
41798876 GTCGAAGCAAGAGTTTTTTACTAAATT
130 GCCGAAATAAG-GTTTTTTACT-AATT
* * * * * *
41798903 T-TTTAAAAATTCAGA-AATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAA
1 TATTTAAAAA-ACACACTA-AATTAAT---AA-ATTTCAAACATAATGTACTAAAATAATGTAAA
*
41798966 ATAATAAAATATA-AAAATAAT-ATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGA
60 ATAATAAAAT-TAGAAAAT-ATGATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAGTACGA
*
41799029 ACAAAGGGCATG-AATAAGGGGCTTTTTTA--AATT
123 ACAAAGGGC-CGAAATAA--GG-TTTTTTACTAATT
41799062 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
1 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
* *
41799127 AAATTAGAAAATATGATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAGTACGAATAAATGG
66 AAATTAGAAAATATGATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAGTACGAACAAAGGG
41799192 CCGAAATAATGGTTTTTTACTAATT
131 CCGAAATAA-GGTTTTTTACTAATT
41799217 T
1 T
41799218 TTTTTGAACT
Statistics
Matches: 268, Mismatches: 24, Indels: 44
0.80 0.07 0.13
Matches are distributed among these distances:
152 9 0.03
153 17 0.06
154 7 0.03
155 102 0.38
156 4 0.01
157 47 0.18
158 8 0.03
159 22 0.08
160 42 0.16
161 2 0.01
162 8 0.03
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (154 bp):
TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
AAATTAGAAAATATGATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAGTACGAACAAAGGG
CCGAAATAAGGTTTTTTACTAATT
Found at i:41804510 original size:10 final size:10
Alignment explanation
Indices: 41804482--41804518 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
41804472 AAATACTTTT
41804482 TTTTTCTCTTC
1 TTTTTCTC-TC
*
41804493 TCTTTCTCTC
1 TTTTTCTCTC
41804503 TTTTTCTCTC
1 TTTTTCTCTC
41804513 TTTTTC
1 TTTTTC
41804519 CGGCAGCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 17 0.71
11 7 0.29
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTTCTCTC
Found at i:41810851 original size:17 final size:16
Alignment explanation
Indices: 41810829--41810881 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 16
41810819 TCTCTATGCA
41810829 TTTTTACTTTTTTTTAT
1 TTTTTA-TTTTTTTTAT
41810846 TTTTTATGTTTTTGTT-T
1 TTTTTAT-TTTTT-TTAT
*
41810863 TTATTATTTTATTTTAT
1 TTTTTATTTT-TTTTAT
41810880 TT
1 TT
41810882 AATTCCATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
16 6 0.19
17 23 0.74
18 2 0.06
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.81
Consensus pattern (16 bp):
TTTTTATTTTTTTTAT
Found at i:41811588 original size:20 final size:20
Alignment explanation
Indices: 41811565--41811602 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
41811555 CTTTTTTATA
*
41811565 TTAAAATATTTTTTTATTTT
1 TTAAAATATTATTTTATTTT
*
41811585 TTAAATTATTATTTTATT
1 TTAAAATATTATTTTATT
41811603 GGTGACGCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTAAAATATTATTTTATTTT
Found at i:41811737 original size:27 final size:27
Alignment explanation
Indices: 41811715--41811780 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
41811705 TAGTAGGCGT
41811715 GACTGATGGAGCCTATTTGGTAGACGC
1 GACTGATGGAGCCTATTTGGTAGACGC
*
41811742 GACTGGTGGAGCCTATTTGGTATG-CGC
1 GACTGATGGAGCCTATTTGGTA-GACGC
* *
41811769 GATTGGTGGAGC
1 GACTGATGGAGC
41811781 TTATCTGACA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 35 0.97
28 1 0.03
ACGTcount: A:0.18, C:0.17, G:0.38, T:0.27
Consensus pattern (27 bp):
GACTGATGGAGCCTATTTGGTAGACGC
Found at i:41813044 original size:190 final size:190
Alignment explanation
Indices: 41812718--41813095 Score: 729
Period size: 190 Copynumber: 2.0 Consensus size: 190
41812708 ACTTAAAGTG
*
41812718 TAAAGCACCTATTTGGTAATGGCTTTTTAACTTGAAGTCCTTAAAGGGCAATAAACCCATTTAAA
1 TAAAGCACCTATTTGGTAATGGCTTTTTAACTTGAAGTCCTTAAAAGGCAATAAACCCATTTAAA
*
41812783 ATATAGTGGACGGCAAGATGGCTAAAAAGCCATGTATTCTATGTTTTAAATATTATTTTACAAAG
66 ATATAGTGGACGACAAGATGGCTAAAAAGCCATGTATTCTATGTTTTAAATATTATTTTACAAAG
41812848 GTTAAAATAGTAAACGAATAATAATGTATATTATATCATAAATATTATAAAATAAAGTTA
131 GTTAAAATAGTAAACGAATAATAATGTATATTATATCATAAATATTATAAAATAAAGTTA
41812908 TAAAGCACCTATTTGGTAATGGCTTTTTAACTTGAAGTCCTTAAAAGGCAATAAACCCATTTAAA
1 TAAAGCACCTATTTGGTAATGGCTTTTTAACTTGAAGTCCTTAAAAGGCAATAAACCCATTTAAA
*
41812973 ATATAGTGGACGACAAGATGGCTAAAAAGCCATGTATTCTATGTTTTAAATATTATTTTACAAAT
66 ATATAGTGGACGACAAGATGGCTAAAAAGCCATGTATTCTATGTTTTAAATATTATTTTACAAAG
41813038 GTTAAAATAGTAAACGAATAATAATGTATATTATATCATAAATATTATAAAATAAAGT
131 GTTAAAATAGTAAACGAATAATAATGTATATTATATCATAAATATTATAAAATAAAGT
41813096 CATTTTCTTC
Statistics
Matches: 185, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
190 185 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (190 bp):
TAAAGCACCTATTTGGTAATGGCTTTTTAACTTGAAGTCCTTAAAAGGCAATAAACCCATTTAAA
ATATAGTGGACGACAAGATGGCTAAAAAGCCATGTATTCTATGTTTTAAATATTATTTTACAAAG
GTTAAAATAGTAAACGAATAATAATGTATATTATATCATAAATATTATAAAATAAAGTTA
Found at i:41813462 original size:28 final size:28
Alignment explanation
Indices: 41813416--41813541 Score: 180
Period size: 28 Copynumber: 4.5 Consensus size: 28
41813406 TGACTTTCGA
* * *
41813416 CACTAAGTGTGCAAATTTAATTGTGAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
41813444 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
41813472 CACTAAGTGTGCGAGTTTAATGGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* * **
41813500 CACTAAGTGTGCGAGTTTGATTATTGAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
41813528 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
41813542 ACTTATTAAA
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 89 1.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:41813720 original size:2 final size:2
Alignment explanation
Indices: 41813713--41813761 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
41813703 ATTTGGAATC
41813713 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
41813755 AT A- AT AT
1 AT AT AT AT
41813762 GATTCTTTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:41814327 original size:23 final size:23
Alignment explanation
Indices: 41814298--41814833 Score: 329
Period size: 23 Copynumber: 23.1 Consensus size: 23
41814288 TTTTTATGCT
*
41814298 TAAATGCTGTCAAATTTTGCATA
1 TAAATGCTGTCAAATTTTGTATA
* *
41814321 TACATGCTGTCAAATTTTGTGTA
1 TAAATGCTGTCAAATTTTGTATA
* * *
41814344 TAAGTGCTATCCAAA-TTGGTATA
1 TAAATGCTGT-CAAATTTTGTATA
** * *
41814367 TGTATGCTGCCCAATTTTGGTGA-A
1 TAAATGCTGTCAAATTTT-GT-ATA
* *
41814391 TAAATGCTGTCCAATTTTGCATA
1 TAAATGCTGTCAAATTTTGTATA
* *
41814414 TACATGCTGTCAAA-TTTGTGTA
1 TAAATGCTGTCAAATTTTGTATA
* * *
41814436 TAAGTGCTGTCCAAA-TTGGTCTA
1 TAAATGCTGT-CAAATTTTGTATA
** * *
41814459 TGTATGCTGCCCAATTTTGGTGA-A
1 TAAATGCTGTCAAATTTT-GT-ATA
* *
41814483 TAAATGCTGTCCAATTTTGCATA
1 TAAATGCTGTCAAATTTTGTATA
* *
41814506 TACATGCTGTCAAATTTTGTGTA
1 TAAATGCTGTCAAATTTTGTATA
* * * * * *
41814529 TAAGTGTTGTCCAAGTTGGTGTA
1 TAAATGCTGTCAAATTTTGTATA
** * *
41814552 TGTATGCTGCCCAATTTTGGTGA-A
1 TAAATGCTGTCAAATTTT-GT-ATA
* *
41814576 TAAATGCTGTCCAATTTTGCATA
1 TAAATGCTGTCAAATTTTGTATA
*
41814599 TACATGCTGTCAAATTTTGTATA
1 TAAATGCTGTCAAATTTTGTATA
* *
41814622 TAAGTGCTGTCCAAA-TTGGTATA
1 TAAATGCTGT-CAAATTTTGTATA
** *
41814645 TGTATGCT-TCTCAATTTTGGTGA-A
1 TAAATGCTGTC-AAATTTT-GT-ATA
* *
41814669 TAAATGCTGTCCAATTTTGCATA
1 TAAATGCTGTCAAATTTTGTATA
* *
41814692 TACATGCTGTTAAATTTTGTATA
1 TAAATGCTGTCAAATTTTGTATA
* *
41814715 TAAGTGCTGTCCAAA-TTAGTATA
1 TAAATGCTGT-CAAATTTTGTATA
* * *
41814738 TATATGCTGCCTAATTTTGGTGA-A
1 TAAATGCTGTCAAATTTT-GT-ATA
* *
41814762 TAAATGTTGTCCAATTTTGTATA
1 TAAATGCTGTCAAATTTTGTATA
* *
41814785 TACATGCTGTCAAATTTTGGTGTA
1 TAAATGCTGTCAAATTTT-GTATA
* *
41814809 TAAATGCTGTCCAATTTTGTGTA
1 TAAATGCTGTCAAATTTTGTATA
41814832 TA
1 TA
41814834 TATATATATA
Statistics
Matches: 390, Mismatches: 97, Indels: 52
0.72 0.18 0.10
Matches are distributed among these distances:
21 1 0.00
22 31 0.08
23 235 0.60
24 118 0.30
25 5 0.01
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (23 bp):
TAAATGCTGTCAAATTTTGTATA
Found at i:41814587 original size:93 final size:93
Alignment explanation
Indices: 41814298--41814822 Score: 881
Period size: 93 Copynumber: 5.6 Consensus size: 93
41814288 TTTTTATGCT
* *
41814298 TAAATGCTGTCAAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTATCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
41814363 TATATGTATGCTGCCCAATTTTGGTGAA
66 TATATGTATGCTGCCCAATTTTGGTGAA
41814391 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAA-TTTGTGTATAAGTGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
*
41814455 TCTATGTATGCTGCCCAATTTTGGTGAA
66 TATATGTATGCTGCCCAATTTTGGTGAA
* *
41814483 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGTTGTCCAAGTTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
*
41814548 TGTATGTATGCTGCCCAATTTTGGTGAA
66 TATATGTATGCTGCCCAATTTTGGTGAA
*
41814576 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTATATAAGTGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
* *
41814641 TATATGTATGCTTCTCAATTTTGGTGAA
66 TATATGTATGCTGCCCAATTTTGGTGAA
* * *
41814669 TAAATGCTGTCCAATTTTGCATATACATGCTGTTAAATTTTGTATATAAGTGCTGTCCAAATTAG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
* *
41814734 TATATATATGCTGCCTAATTTTGGTGAA
66 TATATGTATGCTGCCCAATTTTGGTGAA
* * *
41814762 TAAATGTTGTCCAATTTTGTATATACATGCTGTCAAATTTTGGTGTATAAATGCTGTCCAA
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTT-GTGTATAAGTGCTGTCCAA
41814823 TTTTGTGTAT
Statistics
Matches: 407, Mismatches: 23, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
92 90 0.22
93 300 0.74
94 17 0.04
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (93 bp):
TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
TATATGTATGCTGCCCAATTTTGGTGAA
Found at i:41817795 original size:160 final size:160
Alignment explanation
Indices: 41817597--41817995 Score: 619
Period size: 160 Copynumber: 2.5 Consensus size: 160
41817587 AAAGTTTATT
*
41817597 TATTTAAATTGC-AAAAAAAAA-CCATAAAATTAATAAATAAAATGGCAAAAAAATCATTACATA
1 TATTTAAATTGCAAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAAATCATTACATA
*
41817660 AATACAAAGTTGACTATTTAAATTGCAAAAAAAAAAAACAC-ATAACATTGATAAATAAAATGGC
66 AATACAAAGTTGACTATTTAAATTGCAAAAAAAAAAAAC-CTATAAAATTGATAAATAAAATGG-
41817724 AAA-AAAGTCATTACATAAATACAAAGTTGAC
129 AAACAAAGTCATTACATAAATACAAAGTTGAC
*
41817755 TATTTAAATTGCAAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAATTCATTACATA
1 TATTTAAATTGCAAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAAATCATTACATA
41817820 AATACAAAGTTGACTATTTAAATTGCAAAAAAAAAAAACCTTATAAAATTGATAAATAAAATGGA
66 AATACAAAGTTGACTATTTAAATTGCAAAAAAAAAAAACC-TATAAAATTGATAAATAAAATGGA
* **
41817885 AACAAATTCATTACATAAATATGAAGTTGAC
130 AACAAAGTCATTACATAAATACAAAGTTGAC
*
41817916 TATTTAAATTGCAAAAAAAAAAAAAAACCCATAAATTTGATAAA-AAAATGGCAAAAAAATCATT
1 TATTTAAATTGC-----AAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAAATCATT
*
41817980 ACATAAATATAAAGTT
61 ACATAAATACAAAGTT
41817996 ATTTATATTA
Statistics
Matches: 222, Mismatches: 9, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
158 12 0.05
159 10 0.05
160 82 0.37
161 58 0.26
165 34 0.15
166 26 0.12
ACGTcount: A:0.57, C:0.10, G:0.08, T:0.25
Consensus pattern (160 bp):
TATTTAAATTGCAAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAAATCATTACATA
AATACAAAGTTGACTATTTAAATTGCAAAAAAAAAAAACCTATAAAATTGATAAATAAAATGGAA
ACAAAGTCATTACATAAATACAAAGTTGAC
Found at i:41817849 original size:43 final size:42
Alignment explanation
Indices: 41817636--41817933 Score: 151
Period size: 43 Copynumber: 7.3 Consensus size: 42
41817626 TTAATAAATA
* *
41817636 AAATGGCAAAAAAATCATTACATAAATACAAAGTTGACTATTT
1 AAATTGCAAAAAATTCATTACATAAATA-AAAGTTGACTATTT
** * * * * * *
41817679 AAATTGCAAAAAA---AAAAAACACATAACA-TTGA-TAAATA
1 AAATTGCAAAAAATTCATTACATAAATAAAAGTTGACT-ATTT
* *
41817717 AAATGGCAAAAAAGTCATTACATAAATACAAAGTTGACTATTT
1 AAATTGCAAAAAATTCATTACATAAATA-AAAGTTGACTATTT
* *** * *
41817760 AAATTGCAAAAAA---A--AAACCCATAAAA-TTGA-TAAATA
1 AAATTGCAAAAAATTCATTACATAAATAAAAGTTGACT-ATTT
*
41817796 AAATGGCAAAAAATTCATTACATAAATACAAAGTTGACTATTT
1 AAATTGCAAAAAATTCATTACATAAATA-AAAGTTGACTATTT
** ** * * **
41817839 AAATTGCAAAAAA-AAAAAACCT-TATAAAA-TTGA-TAAAT
1 AAATTGCAAAAAATTCATTACATAAATAAAAGTTGACTATTT
* * *
41817877 AAAATGGAAACAAATTCATTACATAAATATGAAGTTGACTATTT
1 AAATTGCAAA-AAATTCATTACATAAATA-AAAGTTGACTATTT
41817921 AAATTGCAAAAAA
1 AAATTGCAAAAAA
41817934 AAAAAAAAAC
Statistics
Matches: 179, Mismatches: 54, Indels: 44
0.65 0.19 0.16
Matches are distributed among these distances:
35 1 0.01
36 18 0.10
37 4 0.02
38 34 0.19
39 10 0.06
40 15 0.08
41 18 0.10
42 11 0.06
43 55 0.31
44 13 0.07
ACGTcount: A:0.56, C:0.10, G:0.08, T:0.26
Consensus pattern (42 bp):
AAATTGCAAAAAATTCATTACATAAATAAAAGTTGACTATTT
Found at i:41817902 original size:82 final size:80
Alignment explanation
Indices: 41817597--41817995 Score: 594
Period size: 81 Copynumber: 5.0 Consensus size: 80
41817587 AAAGTTTATT
*
41817597 TATTTAAATTGC---AAAAAAAAACCATAAAATTAATAAATAAAATGGCAAAAAAATCATTACAT
1 TATTTAAATTGCAAAAAAAAAAAACCATAAAATTGATAAATAAAATGGCAAAAAAATCATTACAT
41817659 AAATACAAAGTTGAC
66 AAATACAAAGTTGAC
* *
41817674 TATTTAAATTGCAAAAAAAAAAAACACATAACATTGATAAATAAAATGGCAAAAAAGTCATTACA
1 TATTTAAATTGCAAAAAAAAAAAAC-CATAAAATTGATAAATAAAATGGCAAAAAAATCATTACA
41817739 TAAATACAAAGTTGAC
65 TAAATACAAAGTTGAC
* *
41817755 TATTTAAATTGC-AAAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAATTCATTACAT
1 TATTTAAATTGCAAAAAAAAAAAACCATAAAATTGATAAATAAAATGGCAAAAAAATCATTACAT
41817819 AAATACAAAGTTGAC
66 AAATACAAAGTTGAC
*
41817834 TATTTAAATTGCAAAAAAAAAAAACCTTATAAAATTGATAAATAAAATGG-AAACAAATTCATTA
1 TATTTAAATTGCAAAAAAAAAAAACC--ATAAAATTGATAAATAAAATGGCAAA-AAAATCATTA
**
41817898 CATAAATATGAAGTTGAC
63 CATAAATACAAAGTTGAC
*
41817916 TATTTAAATTGCAAAAAAAAAAAAAAACCCATAAATTTGATAAA-AAAATGGCAAAAAAATCATT
1 TATTTAAATTGC---AAAAAAAAAAAA-CCATAAAATTGATAAATAAAATGGCAAAAAAATCATT
*
41817980 ACATAAATATAAAGTT
62 ACATAAATACAAAGTT
41817996 ATTTATATTA
Statistics
Matches: 297, Mismatches: 12, Indels: 20
0.90 0.04 0.06
Matches are distributed among these distances:
77 12 0.04
79 65 0.22
80 33 0.11
81 67 0.23
82 60 0.20
83 30 0.10
84 16 0.05
85 12 0.04
86 2 0.01
ACGTcount: A:0.57, C:0.10, G:0.08, T:0.25
Consensus pattern (80 bp):
TATTTAAATTGCAAAAAAAAAAAACCATAAAATTGATAAATAAAATGGCAAAAAAATCATTACAT
AAATACAAAGTTGAC
Found at i:41818406 original size:18 final size:17
Alignment explanation
Indices: 41818383--41818425 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
41818373 AGTGTAGTTT
41818383 TGGCTCTACCTCTGGCTC
1 TGGCTCTA-CTCTGGCTC
*
41818401 TGGCTCCGACTCTGGCTC
1 TGGCT-CTACTCTGGCTC
*
41818419 CGGCTCT
1 TGGCTCT
41818426 GGTGCATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.05
18 18 0.86
19 2 0.10
ACGTcount: A:0.05, C:0.40, G:0.26, T:0.30
Consensus pattern (17 bp):
TGGCTCTACTCTGGCTC
Found at i:41818413 original size:12 final size:12
Alignment explanation
Indices: 41818398--41818427 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
41818388 CTACCTCTGG
41818398 CTCTGGCTCCGA
1 CTCTGGCTCCGA
*
41818410 CTCTGGCTCCGG
1 CTCTGGCTCCGA
41818422 CTCTGG
1 CTCTGG
41818428 TGCATGATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.40, G:0.30, T:0.27
Consensus pattern (12 bp):
CTCTGGCTCCGA
Found at i:41820133 original size:457 final size:454
Alignment explanation
Indices: 41819279--41820616 Score: 2221
Period size: 457 Copynumber: 3.0 Consensus size: 454
41819269 CCCCTAACTG
*
41819279 TATGAACGAGTGTTATGCAAAGTGGATAATAGGGGTAAGTACATCAAGTGGACACTATTACCATT
1 TATGAACGAGTGTTATGCAAATTGGATAATAGGGGTAAGTACATCAAGTGGACACTATTACCATT
41819344 TGCATCCGGCATGAGTACACCCCTTATAAGGTGCATAATGTAAGCTCGAATGACCTGCATCACCT
66 TGCATCCGGCATGAGTACACCCCTTATAAGGTGCATAATGTAAGCTCGAATGACCTGCATCACCT
* *
41819409 CTCATCCATTGGCAGTACTCGGCAAATACTCAGAATTGGACTTTAGCCATGAAAACCTCAAACTG
131 CCCATCCATTGGCAGTACTCGGCAAATACTCAGAATTGGCCTTTAGCCATGAAAACCTCAAACTG
* *
41819474 ATAAATTTCCCCTCACTTGGTGAGCGTTCAAATAAGTCATAGCAAAGGGCAGCCGACCTAGAGGT
196 ATAAATTTCCCCTCACTTGGCGAGCGTTCAAATAAGTCATAGCAAAGGGCAGCCGGCCTAGAGGT
*
41819539 CAAACTTACGCCCGTAACCGCATTCCCGTCGATGGGGAGCCCGAGCTGTAGTGCAACATCCTCTA
261 CAAACTTACGCCCGTGACCGCATTCCCGTCGATGGGGAGCCCGAGCTGTAGTGCAACATCCTCTA
*
41819604 GAGTGATGATGCACTCCTCGCACGACAAATGAAATGTGTGGGTCTTTGGACGCCATCGCTCGACT
326 GAGTGATGATGCACTCC-CGCACGACAAATGAAATGTGTGGGTCTCTGGACGCCATCGCTCGACT
41819669 AAAGCGGAAATCAAGTTCTATCGTAGATCAAAAGTTCAGATCAATGCCACTGATCTGAACCCGAC
390 AAAGCGGAAATCAAGTT-TATCGTAGATCAAAAGTTC-GATCAATGCCACTGATCTGAACCCGAC
41819734 TA
453 TA
41819736 TATGAACGAGTGTTATGCAAATTGGATAATAGGGGTAAGTACATCAAGTGGACACTATTACCATT
1 TATGAACGAGTGTTATGCAAATTGGATAATAGGGGTAAGTACATCAAGTGGACACTATTACCATT
*
41819801 TGCATTCGGCATGAGTACACCCCTTATAAGGTGCATAATGTAAGCTCGAATGACCTGCATCACCT
66 TGCATCCGGCATGAGTACACCCCTTATAAGGTGCATAATGTAAGCTCGAATGACCTGCATCACCT
41819866 CCCATCCATTGGCAGTACTCGGCAAATACTCAGAATTGGCCTTTAGCCATGAAAACCTCAAACTG
131 CCCATCCATTGGCAGTACTCGGCAAATACTCAGAATTGGCCTTTAGCCATGAAAACCTCAAACTG
*
41819931 ATAAATTTCTCCTCACTTGGCGAGCGTTCAAATAAGTCATAGCAAAGGGCAGCCGGCCTAGAGGT
196 ATAAATTTCCCCTCACTTGGCGAGCGTTCAAATAAGTCATAGCAAAGGGCAGCCGGCCTAGAGGT
* * *
41819996 CAAACTTACGCCCGTGACCGTATTCCCGTCGATGGGGAGTCTGAGCTGTAGTGCAACATCCTCTA
261 CAAACTTACGCCCGTGACCGCATTCCCGTCGATGGGGAGCCCGAGCTGTAGTGCAACATCCTCTA
41820061 GAGTGATGATGCACTCTCCGCACGACAAATGAAATGTGTGGGTCTCTGGACGCCATCGCTCGACT
326 GAGTGATGATGCACTC-CCGCACGACAAATGAAATGTGTGGGTCTCTGGACGCCATCGCTCGACT
* *
41820126 AAAGCGG-----AA----ATC--A-AT-----G--C---C-AT-----TGATCTGAACTCGACTG
390 AAAGCGGAAATCAAGTTTATCGTAGATCAAAAGTTCGATCAATGCCACTGATCTGAACCCGACTA
41820163 TATGAACGAGTGTTATGCAAATTGGATAATAGGGGTAAGTACAT-AAGTGGACACTATTACCATT
1 TATGAACGAGTGTTATGCAAATTGGATAATAGGGGTAAGTACATCAAGTGGACACTATTACCATT
*
41820227 TGCATCCGGCATGAGTACACCCCTTATAAGGTGCATAATGTAAGCTCGAATGACCTGCGTCACCT
66 TGCATCCGGCATGAGTACACCCCTTATAAGGTGCATAATGTAAGCTCGAATGACCTGCATCACCT
*
41820292 CCCATCCATTGGCAGTACTCGGCAAATACTCAGAATTGGCCTTTACCCATGAAAACCTCAAACTG
131 CCCATCCATTGGCAGTACTCGGCAAATACTCAGAATTGGCCTTTAGCCATGAAAACCTCAAACTG
*
41820357 ATAAATTTCCCCTCACTTGGCGAGCGTTCAAATAAGTCATAGCAAAGGGCAACCGGCCTAGAGGT
196 ATAAATTTCCCCTCACTTGGCGAGCGTTCAAATAAGTCATAGCAAAGGGCAGCCGGCCTAGAGGT
* *
41820422 CAAACTTATGCCCGTGACCGCATTCCCGTCGATGGGGAGCCCGAGCTGTAGTGCAACATCTTCTA
261 CAAACTTACGCCCGTGACCGCATTCCCGTCGATGGGGAGCCCGAGCTGTAGTGCAACATCCTCTA
*
41820487 GAGTGATGATGCACTCCCCGCATGACAAATGAAATGTGTGGGTCTCTGGACGCCATCGCTCGACT
326 GAGTGATGATGCACT-CCCGCACGACAAATGAAATGTGTGGGTCTCTGGACGCCATCGCTCGACT
*
41820552 AAAGCGGAAATCAAGTTGTATCGTAGATCAAAAGTTCGGATCAATGCCACTGATTTGAACCCGAC
390 AAAGCGGAAATCAAGTT-TATCGTAGATCAAAAGTTC-GATCAATGCCACTGATCTGAACCCGAC
41820617 GAACTCCAAG
Statistics
Matches: 822, Mismatches: 27, Indels: 65
0.90 0.03 0.07
Matches are distributed among these distances:
426 339 0.41
427 60 0.07
431 2 0.00
432 2 0.00
433 1 0.00
436 3 0.00
437 1 0.00
438 1 0.00
439 3 0.00
444 3 0.00
445 1 0.00
446 1 0.00
447 3 0.00
450 1 0.00
451 2 0.00
452 2 0.00
456 13 0.02
457 383 0.47
458 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (454 bp):
TATGAACGAGTGTTATGCAAATTGGATAATAGGGGTAAGTACATCAAGTGGACACTATTACCATT
TGCATCCGGCATGAGTACACCCCTTATAAGGTGCATAATGTAAGCTCGAATGACCTGCATCACCT
CCCATCCATTGGCAGTACTCGGCAAATACTCAGAATTGGCCTTTAGCCATGAAAACCTCAAACTG
ATAAATTTCCCCTCACTTGGCGAGCGTTCAAATAAGTCATAGCAAAGGGCAGCCGGCCTAGAGGT
CAAACTTACGCCCGTGACCGCATTCCCGTCGATGGGGAGCCCGAGCTGTAGTGCAACATCCTCTA
GAGTGATGATGCACTCCCGCACGACAAATGAAATGTGTGGGTCTCTGGACGCCATCGCTCGACTA
AAGCGGAAATCAAGTTTATCGTAGATCAAAAGTTCGATCAATGCCACTGATCTGAACCCGACTA
Found at i:41820502 original size:426 final size:431
Alignment explanation
Indices: 41819718--41820565 Score: 1519
Period size: 426 Copynumber: 2.0 Consensus size: 431
41819708 ATCAATGCCA
*
41819718 CTGATCTGAACCCGACTATATGAACGAGTGTTATGCAAATTGGATAATAGGGGTAAGTACATCAA
1 CTGATCTGAACCCGACTGTATGAACGAGTGTTATGCAAATTGGATAATAGGGGTAAGTACATCAA
*
41819783 GTGGACACTATTACCATTTGCATTCGGCATGAGTACACCCCTTATAAGGTGCATAATGTAAGCTC
66 GTGGACACTATTACCATTTGCATCCGGCATGAGTACACCCCTTATAAGGTGCATAATGTAAGCTC
41819848 GAATGACCTGCATCACCTCCCATCCATTGGCAGTACTCGGCAAATACTCAGAATTGGCCTTTAGC
131 GAATGACCTGCATCACCTCCCATCCATTGGCAGTACTCGGCAAATACTCAGAATTGGCCTTTAGC
*
41819913 CATGAAAACCTCAAACTGATAAATTTCTCCTCACTTGGCGAGCGTTCAAATAAGTCATAGCAAAG
196 CATGAAAACCTCAAACTGATAAATTTCCCCTCACTTGGCGAGCGTTCAAATAAGTCATAGCAAAG
* * *
41819978 GGCAGCCGGCCTAGAGGTCAAACTTACGCCCGTGACCGTATTCCCGTCGATGGGGAGTCTGAGCT
261 GGCAGCCGGCCTAGAGGTCAAACTTACGCCCGTGACCGCATTCCCGTCGATGGGGAGCCCGAGCT
41820043 GTAGTGCAACATCCTCTAGAGTGATGATGCACTCTCCGCACGACAAATGAAATGTGTGGGTCTCT
326 GTAGTGCAACATCCTCTAGAGTGATGATGCACTC-CCGCACGACAAATGAAATGTGTGGGTCTCT
41820108 GGACGCCATCGCTCGACTAAAGCGGAAATCAAT-G-C-C-AT
390 GGACGCCATCGCTCGACTAAAGCGGAAATCAATAGTCACAAT
*
41820146 -TGATCTGAACTCGACTGTATGAACGAGTGTTATGCAAATTGGATAATAGGGGTAAGTACAT-AA
1 CTGATCTGAACCCGACTGTATGAACGAGTGTTATGCAAATTGGATAATAGGGGTAAGTACATCAA
41820209 GTGGACACTATTACCATTTGCATCCGGCATGAGTACACCCCTTATAAGGTGCATAATGTAAGCTC
66 GTGGACACTATTACCATTTGCATCCGGCATGAGTACACCCCTTATAAGGTGCATAATGTAAGCTC
* *
41820274 GAATGACCTGCGTCACCTCCCATCCATTGGCAGTACTCGGCAAATACTCAGAATTGGCCTTTACC
131 GAATGACCTGCATCACCTCCCATCCATTGGCAGTACTCGGCAAATACTCAGAATTGGCCTTTAGC
41820339 CATGAAAACCTCAAACTGATAAATTTCCCCTCACTTGGCGAGCGTTCAAATAAGTCATAGCAAAG
196 CATGAAAACCTCAAACTGATAAATTTCCCCTCACTTGGCGAGCGTTCAAATAAGTCATAGCAAAG
* *
41820404 GGCAACCGGCCTAGAGGTCAAACTTATGCCCGTGACCGCATTCCCGTCGATGGGGAGCCCGAGCT
261 GGCAGCCGGCCTAGAGGTCAAACTTACGCCCGTGACCGCATTCCCGTCGATGGGGAGCCCGAGCT
* *
41820469 GTAGTGCAACATCTTCTAGAGTGATGATGCACTCCCCGCATGACAAATGAAATGTGTGGGTCTCT
326 GTAGTGCAACATCCTCTAGAGTGATGATGCACT-CCCGCACGACAAATGAAATGTGTGGGTCTCT
41820534 GGACGCCATCGCTCGACTAAAGCGGAAATCAA
390 GGACGCCATCGCTCGACTAAAGCGGAAATCAA
41820566 GTTGTATCGT
Statistics
Matches: 406, Mismatches: 13, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
426 346 0.85
427 60 0.15
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.24
Consensus pattern (431 bp):
CTGATCTGAACCCGACTGTATGAACGAGTGTTATGCAAATTGGATAATAGGGGTAAGTACATCAA
GTGGACACTATTACCATTTGCATCCGGCATGAGTACACCCCTTATAAGGTGCATAATGTAAGCTC
GAATGACCTGCATCACCTCCCATCCATTGGCAGTACTCGGCAAATACTCAGAATTGGCCTTTAGC
CATGAAAACCTCAAACTGATAAATTTCCCCTCACTTGGCGAGCGTTCAAATAAGTCATAGCAAAG
GGCAGCCGGCCTAGAGGTCAAACTTACGCCCGTGACCGCATTCCCGTCGATGGGGAGCCCGAGCT
GTAGTGCAACATCCTCTAGAGTGATGATGCACTCCCGCACGACAAATGAAATGTGTGGGTCTCTG
GACGCCATCGCTCGACTAAAGCGGAAATCAATAGTCACAAT
Found at i:41821166 original size:15 final size:16
Alignment explanation
Indices: 41821130--41821169 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
41821120 ACATTTCAAT
41821130 AAATAAATAAAAATGTTC
1 AAATAAATAAAAA--TTC
41821148 AAATAAATAAAAA-TC
1 AAATAAATAAAAATTC
41821163 AAATAAA
1 AAATAAA
41821170 ATTACATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.41
18 13 0.59
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.23
Consensus pattern (16 bp):
AAATAAATAAAAATTC
Found at i:41821178 original size:15 final size:16
Alignment explanation
Indices: 41821160--41821192 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
41821150 ATAAATAAAA
41821160 ATCAAAT-AAAATTAC
1 ATCAAATAAAAATTAC
*
41821175 ATCATATAAAAATTAC
1 ATCAAATAAAAATTAC
41821191 AT
1 AT
41821193 TAAAAAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (16 bp):
ATCAAATAAAAATTAC
Found at i:41821334 original size:103 final size:103
Alignment explanation
Indices: 41821193--41821471 Score: 370
Period size: 103 Copynumber: 2.7 Consensus size: 103
41821183 AAAATTACAT
*
41821193 TAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAAC
1 TAAAAAATCACAAAACACTAAA-TAAACACTAACAATTTATAAAACCTAATCATAAATTACTAAC
41821258 AAAATAACTAT-AAATT-TTTTTAAAAAAAATACATTAC
65 AAAATAACTATAAAATTATTTTTAAAAAAAATACATTAC
* *
41821295 TAAAAAAATCACTAAACACATAAATAAACACTAACAATTTATAAAACCTAATCATAAATTAATAA
1 T-AAAAAATCACAAAACAC-TAAATAAACACTAACAATTTATAAAACCTAATCATAAATTACTAA
* *
41821360 CAAAATAACTATAAAATTATTTTTAAAAAAATTATATTAC
64 CAAAATAACTATAAAATTATTTTTAAAAAAAATACATTAC
* * ** *
41821400 TAAAAAATCACAAAACTCTATACTAAACA-TCAACAA-TT-TGGAACCTAATCCCATAAATCACT
1 TAAAAAATCACAAAACACTA-AATAAACACT-AACAATTTATAAAACCTAAT--CATAAATTACT
41821462 AACAAAATAA
62 AACAAAATAA
41821472 ATAACTATAA
Statistics
Matches: 157, Mismatches: 12, Indels: 14
0.86 0.07 0.08
Matches are distributed among these distances:
102 10 0.06
103 72 0.46
104 55 0.35
105 20 0.13
ACGTcount: A:0.56, C:0.16, G:0.01, T:0.27
Consensus pattern (103 bp):
TAAAAAATCACAAAACACTAAATAAACACTAACAATTTATAAAACCTAATCATAAATTACTAACA
AAATAACTATAAAATTATTTTTAAAAAAAATACATTAC
Found at i:41821789 original size:60 final size:60
Alignment explanation
Indices: 41821669--41821785 Score: 209
Period size: 60 Copynumber: 2.0 Consensus size: 60
41821659 ATACTAAACT
* *
41821669 AAACACAACAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
41821729 AAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAA-AATT
1 AAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATT
41821786 TACATTCATA
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
59 4 0.07
60 51 0.93
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.32
Consensus pattern (60 bp):
AAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
Found at i:41822350 original size:24 final size:25
Alignment explanation
Indices: 41822285--41822350 Score: 64
Period size: 24 Copynumber: 2.7 Consensus size: 25
41822275 ATATATATTT
*
41822285 AAATATTTTGAATAAAAATAAAATAA
1 AAATATTTT-AATATAAATAAAATAA
* * *
41822311 AAACATTTT-ATTTAAATTAAA-AA
1 AAATATTTTAATATAAATAAAATAA
*
41822334 ATATATTTTAATATAAA
1 AAATATTTTAATATAAA
41822351 AAAGTGTTTG
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
23 9 0.28
24 15 0.47
26 8 0.25
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (25 bp):
AAATATTTTAATATAAATAAAATAA
Found at i:41823333 original size:30 final size:30
Alignment explanation
Indices: 41823276--41823335 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
41823266 ATTTAACCAG
* *
41823276 TTTTATGAATTTTTAATACATATTTTAATT
1 TTTTATGAAATTTTAATAAATATTTTAATT
*
41823306 TTTTATGAAATTTTAA-AAATTTATTTAATT
1 TTTTATGAAATTTTAATAAATAT-TTTAATT
41823336 ATTGTTAGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (30 bp):
TTTTATGAAATTTTAATAAATATTTTAATT
Found at i:41834058 original size:20 final size:20
Alignment explanation
Indices: 41834033--41834072 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
41834023 CGTAAAATGA
*
41834033 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
41834053 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
41834073 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:41834062 original size:34 final size:35
Alignment explanation
Indices: 41834018--41834084 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
41834008 CAGTAAAATA
*
41834018 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
41834052 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
41834085 CTAGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:41837129 original size:64 final size:64
Alignment explanation
Indices: 41837050--41837181 Score: 246
Period size: 64 Copynumber: 2.1 Consensus size: 64
41837040 CAAAATAGAT
*
41837050 AGTTTTGAACATCTCGAGATGGACTTCAAGCCTACATGAGAGAACATAAAACAGATTATGGTCA
1 AGTTTTGAACATCTCGAGATGGACTTCAAACCTACATGAGAGAACATAAAACAGATTATGGTCA
*
41837114 AGTTTTGAACATCTCGAGATGGACTTCAAACCTGCATGAGAGAACATAAAACAGATTATGGTCA
1 AGTTTTGAACATCTCGAGATGGACTTCAAACCTACATGAGAGAACATAAAACAGATTATGGTCA
41837178 AGTT
1 AGTT
41837182 AAAACCTTCG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (64 bp):
AGTTTTGAACATCTCGAGATGGACTTCAAACCTACATGAGAGAACATAAAACAGATTATGGTCA
Found at i:41858304 original size:15 final size:15
Alignment explanation
Indices: 41858284--41858317 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
41858274 TTAAATAAGA
41858284 TTAAAATAGTATAAC
1 TTAAAATAGTATAAC
*
41858299 TTAAAATAGTATAAT
1 TTAAAATAGTATAAC
41858314 TTAA
1 TTAA
41858318 CAATCAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (15 bp):
TTAAAATAGTATAAC
Found at i:41858360 original size:3 final size:3
Alignment explanation
Indices: 41858352--41858403 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
41858342 ATAGTAGCAA
41858352 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
41858400 AAT A
1 AAT A
41858404 GCAAAAAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:41863275 original size:19 final size:18
Alignment explanation
Indices: 41863242--41863277 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
41863232 GTTCACAAGC
41863242 TGTTAATATCAGTTAGTT
1 TGTTAATATCAGTTAGTT
*
41863260 TGTTAGTATGCAGTTAGT
1 TGTTAATAT-CAGTTAGT
41863278 AGCTGTTAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.25, C:0.06, G:0.22, T:0.47
Consensus pattern (18 bp):
TGTTAATATCAGTTAGTT
Found at i:41864642 original size:29 final size:28
Alignment explanation
Indices: 41864610--41864670 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
41864600 TAAAAGCCGT
*
41864610 TTTTTTTAAAATTTACCGAAATGGGCCAA
1 TTTTTTGAAAATTTACCGAAATGGGCC-A
** * *
41864639 TTTTTTGATTATTTACCGGAATGGTCCA
1 TTTTTTGAAAATTTACCGAAATGGGCCA
41864667 TTTT
1 TTTT
41864671 CCGGGAAATC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (28 bp):
TTTTTTGAAAATTTACCGAAATGGGCCA
Found at i:41864901 original size:12 final size:12
Alignment explanation
Indices: 41864884--41864913 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
41864874 TAATCCTCTC
41864884 AATTTCCTTCCA
1 AATTTCCTTCCA
41864896 AATTTCCTTCCA
1 AATTTCCTTCCA
41864908 AATTTC
1 AATTTC
41864914 TCTCAAACCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (12 bp):
AATTTCCTTCCA
Found at i:41864956 original size:51 final size:51
Alignment explanation
Indices: 41864896--41865003 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 51
41864886 TTTCCTTCCA
* *
41864896 AATTTCCTTCCAAATTTCTCTCAAACCCATATTTAATTTAAATTTCCTCTC
1 AATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTAAATTTCCCCTC
* *
41864947 AATTTCCTTCCAAAATTCTCTCAAATCCATATTTAATTTCAATTTCCCCTC
1 AATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTAAATTTCCCCTC
41864998 AATTTC
1 AATTTC
41865004 ATTTTTTAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.43
Consensus pattern (51 bp):
AATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTAAATTTCCCCTC
Found at i:41866131 original size:7 final size:7
Alignment explanation
Indices: 41866119--41866143 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
41866109 AGTCGAATGA
41866119 TATTTAG
1 TATTTAG
41866126 TATTTAG
1 TATTTAG
41866133 TATTTAG
1 TATTTAG
41866140 TATT
1 TATT
41866144 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:41866819 original size:18 final size:18
Alignment explanation
Indices: 41866793--41866827 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
41866783 AAGTGTGTTT
* *
41866793 CCTAGCCCTTATATGTAC
1 CCTAACCCTTACATGTAC
41866811 CCTAACCCTTACATGTA
1 CCTAACCCTTACATGTA
41866828 TCCTTTTCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.34, G:0.09, T:0.31
Consensus pattern (18 bp):
CCTAACCCTTACATGTAC
Found at i:41867320 original size:35 final size:35
Alignment explanation
Indices: 41867209--41867321 Score: 88
Period size: 35 Copynumber: 3.2 Consensus size: 35
41867199 GGCATAGACA
*
41867209 TTGATATTATTTGATGTAATAAAATAGAAGTTTAT
1 TTGATATTATTTGATGTAATAAAATAAAAGTTTAT
* * ** * ***
41867244 TTGATGTAATACGCA--TAAAAAAATTTTCGAG-TTATT
1 TTGATATTATTTG-ATGTAATAAAA--TAAAAGTTTA-T
41867280 TTGATATTATTTGATGTAATAAAATAAAAGTTTAT
1 TTGATATTATTTGATGTAATAAAATAAAAGTTTAT
41867315 TTGATAT
1 TTGATAT
41867322 AATAGGCATA
Statistics
Matches: 55, Mismatches: 16, Indels: 14
0.65 0.19 0.16
Matches are distributed among these distances:
34 7 0.13
35 24 0.44
36 17 0.31
37 7 0.13
ACGTcount: A:0.40, C:0.03, G:0.13, T:0.44
Consensus pattern (35 bp):
TTGATATTATTTGATGTAATAAAATAAAAGTTTAT
Found at i:41867325 original size:71 final size:71
Alignment explanation
Indices: 41867209--41867391 Score: 294
Period size: 71 Copynumber: 2.6 Consensus size: 71
41867199 GGCATAGACA
*
41867209 TTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATACGCATAAAAAAATTTTCGA
1 TTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATATAATACGCATAAAAAAATTTTCGA
41867274 GTTATT
66 GTTATT
* * * **
41867280 TTGATATTATTTGATGTAATAAAATAAAAGTTTATTTGATATAATAGGCATAGAAATTTTTTCGA
1 TTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATATAATACGCATAAAAAAATTTTCGA
41867345 GTTATT
66 GTTATT
*
41867351 TTGATATTATTTGATATAATAAAATAGAAGTTTTATTTGAT
1 TTGATATTATTTGATGTAATAAAATAGAAG-TTTATTTGAT
41867392 GTAAAAACCC
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
71 93 0.90
72 10 0.10
ACGTcount: A:0.39, C:0.03, G:0.14, T:0.45
Consensus pattern (71 bp):
TTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATATAATACGCATAAAAAAATTTTCGA
GTTATT
Found at i:41867416 original size:18 final size:18
Alignment explanation
Indices: 41867393--41867445 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 18
41867383 TTATTTGATG
41867393 TAAAAACCCTAATTTAAT
1 TAAAAACCCTAATTTAAT
41867411 TAAAAACCCTAACCTAATTTAAT
1 TAAAAA--C---CCTAATTTAAT
41867434 TAAAAACCCTAA
1 TAAAAACCCTAA
41867446 CCCTAACCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
18 11 0.37
20 1 0.03
21 1 0.03
23 17 0.57
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAAAACCCTAATTTAAT
Found at i:41867426 original size:23 final size:23
Alignment explanation
Indices: 41867400--41867476 Score: 100
Period size: 23 Copynumber: 3.1 Consensus size: 23
41867390 ATGTAAAAAC
41867400 CCTAATTTAATTAAAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAA
41867423 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATT--AAA----AACCCTAA
41867452 CCTAATTTAATTAAAAACCCTAA
1 CCTAATTTAATTAAAAACCCTAA
41867475 CC
1 CC
41867477 CTAACCTAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
23 22 0.46
25 3 0.06
27 3 0.06
29 20 0.42
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (23 bp):
CCTAATTTAATTAAAAACCCTAA
Found at i:41867448 original size:29 final size:29
Alignment explanation
Indices: 41867415--41867500 Score: 172
Period size: 29 Copynumber: 3.0 Consensus size: 29
41867405 TTTAATTAAA
41867415 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
41867444 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
41867473 AACCCTAACCTAATTTAATTAAAAACCC
1 AACCCTAACCTAATTTAATTAAAAACCC
41867501 ATTGCCATAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 57 1.00
ACGTcount: A:0.45, C:0.28, G:0.00, T:0.27
Consensus pattern (29 bp):
AACCCTAACCTAATTTAATTAAAAACCCT
Found at i:41869387 original size:123 final size:123
Alignment explanation
Indices: 41869168--41869392 Score: 387
Period size: 123 Copynumber: 1.8 Consensus size: 123
41869158 CCCAAGCTTG
**
41869168 CTACTGTAGCAAAATCGCGTCCATGAGGGCACGATTTCACAATTTTTTCTCAAATAACATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACAAGGGCACGATTTCACAATTTTTTCTCAAATAACATCCTGG
*
41869233 TAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTACATGAC
** *
41869291 CTACTGTAGCAAAATCGCGTCCACAAGGGTGCGATTTCACAATTTTTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACAAGGGCACGATTTCACAATTTTTTCTCAAATAACATCCTGG
*
41869356 TAGAAGCGATTTTATACTATTTGCTTAGAAACGTCAA
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
41869393 CTCGAAATAA
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
123 95 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (123 bp):
CTACTGTAGCAAAATCGCGTCCACAAGGGCACGATTTCACAATTTTTTCTCAAATAACATCCTGG
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTACATGAC
Found at i:41870884 original size:24 final size:23
Alignment explanation
Indices: 41870831--41870886 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
41870821 TACTTTGGGT
*
41870831 AAATTTTGGTAAAAATCAGTTGA
1 AAATTTTGGTAAAAATCACTTGA
* *
41870854 AAATTTTGTTAAAAATCCCTTGCA
1 AAATTTTGGTAAAAATCACTTG-A
*
41870878 AAGTTTTGG
1 AAATTTTGG
41870887 ATCCTTTTCA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 19 0.70
24 8 0.30
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (23 bp):
AAATTTTGGTAAAAATCACTTGA
Done.