Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 149 of 150
Found at i:45241862 original size:14 final size:13
Alignment explanation
Indices: 45241843--45241889 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
45241833 GACTTTAATT
45241843 TATTTTTAATATAA
1 TATTTTT-ATATAA
45241857 TATTTTTATA-AA
1 TATTTTTATATAA
*
45241869 TATATATTATATAA
1 TAT-TTTTATATAA
45241883 TATTTTT
1 TATTTTT
45241890 TATCCATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 5 0.17
13 12 0.41
14 12 0.41
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTTTTATATAA
Found at i:45247172 original size:11 final size:11
Alignment explanation
Indices: 45247128--45247172 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
45247118 TTAATTTTAA
*
45247128 TTTTAAAATAC
1 TTTTAAAATAT
45247139 TTTTAAAATAT
1 TTTTAAAATAT
*
45247150 TTTT---TTAT
1 TTTTAAAATAT
45247158 TTTTAAAATAT
1 TTTTAAAATAT
45247169 TTTT
1 TTTT
45247173 TTTGTGTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
8 7 0.25
11 21 0.75
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:45248887 original size:28 final size:28
Alignment explanation
Indices: 45248853--45248951 Score: 82
Period size: 26 Copynumber: 3.7 Consensus size: 28
45248843 AAAATATAAC
*
45248853 AAATATATATATGTATATATAAATTATA
1 AAATATATATAAGTATATATAAATTATA
* *
45248881 AAATATATGTACA-TATATGT--ATTATA
1 AAATATATATA-AGTATATATAAATTATA
* ** * *
45248907 AAATGTATATAAGTATACGTATATTTTA
1 AAATATATATAAGTATATATAAATTATA
45248935 AAAT-TATA-AAGTATATA
1 AAATATATATAAGTATATA
45248952 CAAAAAAAGA
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
25 1 0.02
26 28 0.48
27 4 0.07
28 25 0.43
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.41
Consensus pattern (28 bp):
AAATATATATAAGTATATATAAATTATA
Found at i:45248923 original size:26 final size:25
Alignment explanation
Indices: 45248853--45248951 Score: 76
Period size: 28 Copynumber: 3.7 Consensus size: 25
45248843 AAAATATAAC
*
45248853 AAATATATATATGTATATATAAATTATA
1 AAAT-TATATAAGTATATAT--ATTATA
* *
45248881 AAATATATGTACA-TATATGTATTATA
1 AAAT-TATATA-AGTATATATATTATA
*
45248907 AAATGTATATAAGTATACGTATATTTTA
1 AAAT-TATATAAGTATA--TATATTATA
45248935 AAATTATA-AAGTATATA
1 AAATTATATAAGTATATA
45248952 CAAAAAAAGA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
24 2 0.03
25 1 0.02
26 26 0.43
27 4 0.07
28 27 0.45
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.41
Consensus pattern (25 bp):
AAATTATATAAGTATATATATTATA
Found at i:45249029 original size:62 final size:63
Alignment explanation
Indices: 45248962--45249080 Score: 170
Period size: 62 Copynumber: 1.9 Consensus size: 63
45248952 CAAAAAAAGA
* * *
45248962 ATATATGTATGTATATA-AATAGGAGTTATAGAATATAAAACACATATATAT-TATAAGAATGC
1 ATATATATATATATATATAATA-AAGTTATAGAATATAAAACACATATATATGTATAAGAATGC
* *
45249024 ATATATATATATATATATATTAAAGTTATAGAATATAAAACACATATGTATGTATAA
1 ATATATATATATATATATAATAAAGTTATAGAATATAAAACACATATATATGTATAA
45249081 ATATATAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
62 42 0.84
63 8 0.16
ACGTcount: A:0.50, C:0.04, G:0.10, T:0.36
Consensus pattern (63 bp):
ATATATATATATATATATAATAAAGTTATAGAATATAAAACACATATATATGTATAAGAATGC
Found at i:45249216 original size:20 final size:22
Alignment explanation
Indices: 45249165--45249216 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
45249155 AATTTTGAAT
*
45249165 AATAATACATGGTAAATTTATAC
1 AATAATA-ATGATAAATTTATAC
* *
45249188 AATATTAATGATAGATTTA-A-
1 AATAATAATGATAAATTTATAC
45249208 AATAATAAT
1 AATAATAAT
45249217 AGATTATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 8 0.32
21 1 0.04
22 10 0.40
23 6 0.24
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.37
Consensus pattern (22 bp):
AATAATAATGATAAATTTATAC
Found at i:45250053 original size:21 final size:21
Alignment explanation
Indices: 45250021--45250069 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
45250011 TTTTGCGATG
*
45250021 TTTTATTGATTTCT-CAATTC
1 TTTTTTTGATTTCTCCAATTC
* *
45250041 TTTTTTTGTATTTTTCCAATTG
1 TTTTTTTG-ATTTCTCCAATTC
45250063 TTTTTTT
1 TTTTTTT
45250070 ACTGTCTGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 7 0.29
21 5 0.21
22 12 0.50
ACGTcount: A:0.14, C:0.10, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTTTTGATTTCTCCAATTC
Found at i:45250138 original size:6 final size:6
Alignment explanation
Indices: 45250122--45250164 Score: 68
Period size: 6 Copynumber: 6.8 Consensus size: 6
45250112 AGCCAAAGAG
45250122 AAAAAT AAAAAAT AAAAAT AAAAAT AAAAAT AAAAAT ATAAAA
1 AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A-AAAA
45250165 AAGCTACTGC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 25 0.71
7 10 0.29
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:45250693 original size:23 final size:24
Alignment explanation
Indices: 45250650--45250694 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
45250640 GAAAAAGGTT
*
45250650 TTCTTTTTTCCTTTTTAGATTGGG
1 TTCTTTTTTCCTTTTCAGATTGGG
*
45250674 TTCTTTTTT-CTTTTCCGATTG
1 TTCTTTTTTCCTTTTCAGATTG
45250695 CTCTTCTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.07, C:0.16, G:0.13, T:0.64
Consensus pattern (24 bp):
TTCTTTTTTCCTTTTCAGATTGGG
Found at i:45265792 original size:21 final size:19
Alignment explanation
Indices: 45265766--45265805 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
45265756 GGCCCGGCCT
45265766 TTTTAATAAACACAAAAAATA
1 TTTTAA-AAACA-AAAAAATA
*
45265787 TTTTAAAAATAAAAAAATA
1 TTTTAAAAACAAAAAAATA
45265806 AAAATAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 4 0.22
21 6 0.33
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
TTTTAAAAACAAAAAAATA
Found at i:45265825 original size:31 final size:31
Alignment explanation
Indices: 45265787--45265847 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
45265777 ACAAAAAATA
45265787 TTTTAAAAATAAAAAAATAAAAATAAATTTT
1 TTTTAAAAATAAAAAAATAAAAATAAATTTT
*
45265818 TTTTAAAAATTAAAAAATAAAAATAAATTT
1 TTTTAAAAATAAAAAAATAAAAATAAATTT
45265848 ATATATTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (31 bp):
TTTTAAAAATAAAAAAATAAAAATAAATTTT
Found at i:45270534 original size:20 final size:20
Alignment explanation
Indices: 45270509--45270548 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
45270499 TACGAAAAAT
*
45270509 TAAAATTTTTAACTCTTAAC
1 TAAAATTTTTAACTATTAAC
45270529 TAAAATTTTTAACTATTAAC
1 TAAAATTTTTAACTATTAAC
45270549 AACACATAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAAATTTTTAACTATTAAC
Found at i:45271740 original size:32 final size:32
Alignment explanation
Indices: 45271704--45271822 Score: 109
Period size: 31 Copynumber: 3.8 Consensus size: 32
45271694 CAATAGTTCT
*
45271704 AAAATTTTAATTAAACCTTTCAAAATTTTTGA
1 AAAATTTTAATTAAACCTCTCAAAATTTTTGA
* * * ** *
45271736 AAAATTTCATTTTATTCTCTCAAAACTTTT-A
1 AAAATTTTAATTAAACCTCTCAAAATTTTTGA
* * *
45271767 AAACTTTTAATTAAACCCCTCACAATTTTTGA
1 AAAATTTTAATTAAACCTCTCAAAATTTTTGA
*
45271799 AAAA-TTTAAATAAACC-CTCCAAAA
1 AAAATTTTAATTAAACCTCT-CAAAA
45271823 CTCAATGTCA
Statistics
Matches: 66, Mismatches: 19, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
30 2 0.03
31 37 0.56
32 27 0.41
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.39
Consensus pattern (32 bp):
AAAATTTTAATTAAACCTCTCAAAATTTTTGA
Found at i:45272821 original size:2 final size:2
Alignment explanation
Indices: 45272814--45272862 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
45272804 ACTGTTTTCT
45272814 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45272856 TA TA TA T
1 TA TA TA T
45272863 TCTTTCCTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:45273478 original size:12 final size:12
Alignment explanation
Indices: 45273457--45273493 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
45273447 GTTATTTCCA
45273457 TTTCCACCGCCG
1 TTTCCACCGCCG
*
45273469 TTTGCACCGCCG
1 TTTCCACCGCCG
*
45273481 TTTCCACCACCG
1 TTTCCACCGCCG
45273493 T
1 T
45273494 CATCTTCTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.11, C:0.46, G:0.16, T:0.27
Consensus pattern (12 bp):
TTTCCACCGCCG
Found at i:45274821 original size:25 final size:26
Alignment explanation
Indices: 45274793--45274845 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
45274783 TACACATTGT
*
45274793 GTAATTTGAACT-TTTTTTTTATTTC
1 GTAATTTGAACTCTTGTTTTTATTTC
45274818 GTAATTTGAACTCTTGTTTTTATTTC
1 GTAATTTGAACTCTTGTTTTTATTTC
45274844 GT
1 GT
45274846 TTTTCTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.19, C:0.09, G:0.11, T:0.60
Consensus pattern (26 bp):
GTAATTTGAACTCTTGTTTTTATTTC
Found at i:45288876 original size:15 final size:14
Alignment explanation
Indices: 45288851--45288912 Score: 54
Period size: 14 Copynumber: 4.3 Consensus size: 14
45288841 TAAATATTTA
*
45288851 ATATATAAAAAATT
1 ATATAAAAAAAATT
*
45288865 ATATAAAGAAAAAAT
1 ATATAAA-AAAAATT
*
45288880 ATATCAAAAAAATT
1 ATATAAAAAAAATT
*
45288894 AGT-TAAAAATAAAAT
1 A-TATAAAAA-AAATT
45288909 ATAT
1 ATAT
45288913 TTAACATAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
14 19 0.50
15 19 0.50
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (14 bp):
ATATAAAAAAAATT
Found at i:45288880 original size:27 final size:28
Alignment explanation
Indices: 45288850--45288912 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 28
45288840 ATAAATATTT
45288850 AATATAT-AAAAAATTA-TATAAAGAA-AA
1 AATATATAAAAAAATTAGT-TAAA-AATAA
45288877 AATATATCAAAAAAATTAGTTAAAAATAA
1 AATATAT-AAAAAAATTAGTTAAAAATAA
45288906 AATATAT
1 AATATAT
45288913 TTAACATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
27 7 0.22
28 2 0.06
29 22 0.69
30 1 0.03
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.29
Consensus pattern (28 bp):
AATATATAAAAAAATTAGTTAAAAATAA
Found at i:45289016 original size:100 final size:94
Alignment explanation
Indices: 45288905--45289082 Score: 248
Period size: 95 Copynumber: 1.8 Consensus size: 94
45288895 GTTAAAAATA
45288905 AAATATATTTAACATAATGATAAATATAAAAAATATATAATTTCATTATATAATTACATATTTAT
1 AAATATATTTAACATAATGAT--ATAT--AAAATATAT-ATTTCATTATATAATTACATATTTAT
45288970 TAATTTATTTATATAAATAGAGGAGTTATTAATTG
61 TAATTTATTTATA-AAATAGAGGAGTTATTAATTG
* * * * * *
45289005 AAATATTTTTAACATCATGATATATATACTATATATTTTATTATATAATTACATATTTATTATTT
1 AAATATATTTAACATAATGATATATAAAATATATATTTCATTATATAATTACATATTTATTAATT
45289070 TATTTATAAAATA
66 TATTTATAAAATA
45289083 TTTCAAATAT
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
94 5 0.07
95 37 0.51
96 7 0.10
98 4 0.06
100 19 0.26
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (94 bp):
AAATATATTTAACATAATGATATATAAAATATATATTTCATTATATAATTACATATTTATTAATT
TATTTATAAAATAGAGGAGTTATTAATTG
Found at i:45293793 original size:17 final size:17
Alignment explanation
Indices: 45293771--45293810 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
45293761 ATTTTATCCA
*
45293771 AAAATTGATCCAAAATT
1 AAAATTGACCCAAAATT
* *
45293788 AAAATTGACCCGAACTT
1 AAAATTGACCCAAAATT
45293805 AAAATT
1 AAAATT
45293811 ACCTTAATCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.07, T:0.28
Consensus pattern (17 bp):
AAAATTGACCCAAAATT
Found at i:45295007 original size:23 final size:23
Alignment explanation
Indices: 45294977--45295026 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
45294967 TTTTTCCTAC
45294977 TTATAATTGTAATTGATTTTGAT
1 TTATAATTGTAATTGATTTTGAT
45295000 TTATAATTGTAATTGATTTTGAT
1 TTATAATTGTAATTGATTTTGAT
45295023 TTAT
1 TTAT
45295027 GAATGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (23 bp):
TTATAATTGTAATTGATTTTGAT
Found at i:45297379 original size:15 final size:16
Alignment explanation
Indices: 45297359--45297390 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
45297349 GTTATTATCG
45297359 TATTTAA-TATATATT
1 TATTTAATTATATATT
45297374 TATTTAATTATATATT
1 TATTTAATTATATATT
45297390 T
1 T
45297391 GTATGGCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTTAATTATATATT
Found at i:45299257 original size:22 final size:22
Alignment explanation
Indices: 45299207--45299257 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
45299197 AAACATACAT
*
45299207 ATTTAATTATTTATATTTATTA
1 ATTTAATTATATATATTTATTA
*
45299229 ATATAATTA-ATATGATTTATTA
1 ATTTAATTATATAT-ATTTATTA
*
45299251 TTTTAAT
1 ATTTAAT
45299258 AAGTTATTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
ATTTAATTATATATATTTATTA
Found at i:45299506 original size:2 final size:2
Alignment explanation
Indices: 45299499--45299534 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
45299489 TTTTGTAACA
*
45299499 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45299535 GTTGTGTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:45304617 original size:3 final size:3
Alignment explanation
Indices: 45304611--45304636 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
45304601 ACAGCAGACC
45304611 CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CA
45304637 AGTTAACCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:45305741 original size:16 final size:16
Alignment explanation
Indices: 45305720--45305757 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
45305710 CATTTGTTAC
*
45305720 TTGAATTTAAAATAAT
1 TTGAATCTAAAATAAT
45305736 TTGAATCTAAAATAAT
1 TTGAATCTAAAATAAT
*
45305752 TCGAAT
1 TTGAAT
45305758 GAATAACACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.39
Consensus pattern (16 bp):
TTGAATCTAAAATAAT
Found at i:45308274 original size:29 final size:29
Alignment explanation
Indices: 45308200--45308274 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
45308190 TTTTTCTTTT
* * *
45308200 TTGGTCACCCAACTATGAAAAGTTAGAAA
1 TTGGTCACTCAACTATTAAAAGTTACAAA
*
45308229 ATGGTCA-TCCAACTATTAAAAGTTACAAA
1 TTGGTCACT-CAACTATTAAAAGTTACAAA
45308258 TTGGTCACTCAACTATT
1 TTGGTCACTCAACTATT
45308275 CAATTTTGTC
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
29 38 0.97
30 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (29 bp):
TTGGTCACTCAACTATTAAAAGTTACAAA
Found at i:45314714 original size:2 final size:2
Alignment explanation
Indices: 45314703--45314740 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
45314693 TTCAGCACTT
45314703 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45314741 TTATGCTTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45319327 original size:148 final size:147
Alignment explanation
Indices: 45318790--45319476 Score: 552
Period size: 148 Copynumber: 4.6 Consensus size: 147
45318780 TAAATGTGTA
* ** *
45318790 TTTAATTGTTAACTTTATATAATCAAATCAATTCGACTTGATTTTAAACTCCAATTAGAATTAAC
1 TTTAATTGTTAACTTTATATAATCAAATCAATTCAACTCAATTTTAAATTCCAATTAGAATTAAC
* * * * * *
45318855 ATATATAGTTATCAGAAATTGAGAAAGTAGGTAGTAGGAAGTAATG-TTTCGGAACCCGAATTGG
66 AAATATAGTTATC----A---A-AAAGTAGGCAGCAAGAAGCAATGTTTTCGGAA-CC-AGTT-G
* ** *
45318919 GATTAGTTTGGATTCAAATTGAACAAGTT
120 GA-TAATTTAAATTTAAATTGAACAAGTT
** * * * * * *
45318948 TTTAATCATTAACTTTATAGAATCCAATCAGTTTAACCCAATTTTAACATTCCAATTAGAATCAA
1 TTTAATTGTTAACTTTATATAATCAAATCAATTCAACTCAATTTTAA-ATTCCAATTAGAATTAA
* * * * *
45319013 TAAATATAGTTATCAAAAAGTAGGCAGTAAAAAACAATGTTTTCGGAAACCCCGAGTTGGGATCG
65 CAAATATAGTTATCAAAAAGTAGGCAGCAAGAAGCAATGTTTTCGG-AA--CC-AGTT-GGAT-A
* * *
45319078 GTTTAAATTCAAATTGAACAAATT
124 ATTTAAATTTAAATTGAACAAGTT
* * * *
45319102 TTTAATTGTTAACTTTATATAATCAAATCAATTTATC-CAACTTTAAATTCCAATTATAATTAAC
1 TTTAATTGTTAACTTTATATAATCAAATCAATTCAACTCAATTTTAAATTCCAATTAGAATTAAC
* * *
45319166 -AA-AT--TTATCAAAAAGTAGGCAACATGAAGCAATGTTTTTGGAACTCAAGTTAGGATAATTT
66 AAATATAGTTATCAAAAAGTAGGCAGCAAGAAGCAATGTTTTCGGAAC-C-AGTT-GGATAATTT
45319227 AAATTTAAATTGAACAAGTT
128 AAATTTAAATTGAACAAGTT
* * **
45319247 TTTAA-T-TTAACTTTATATAATCAAATTAATTCAA-TCAGTTTTTAAATTTTAATTAGAATTAA
1 TTTAATTGTTAACTTTATATAATCAAATCAATTCAACTCA-ATTTTAAATTCCAATTAGAATTAA
* * * * * * * *
45319309 CAAATATAGTTATTAAAAAGGAGGCAGCAAGAAGCAATGTTTTCGAAACCCG--GGGTCAGTTGA
65 CAAATATAGTTATCAAAAAGTAGGCAGCAAGAAGCAATGTTTTCGGAACCAGTTGGATAATTTAA
* *
45319372 ATTTAAATTAAACACGTT
130 ATTTAAATTGAACAAGTT
* * * *
45319390 TTTAATTGTTAACTTTATATAATCAAATCAAATCAATTTAATTTTTAAATTTCAATTA-AAGTTA
1 TTTAATTGTTAACTTTATATAATCAAATCAATTCAACTCAA-TTTTAAATTCCAATTAGAA-TTA
* *
45319454 TCAAATATAGTTATCAAGAAGTA
64 ACAAATATAGTTATCAAAAAGTA
45319477 ACGTTTTCAA
Statistics
Matches: 436, Mismatches: 76, Indels: 46
0.78 0.14 0.08
Matches are distributed among these distances:
143 55 0.13
144 22 0.05
145 57 0.13
146 51 0.12
147 3 0.01
148 65 0.15
150 2 0.00
151 20 0.05
152 22 0.05
153 11 0.03
154 63 0.14
155 1 0.00
158 37 0.08
159 27 0.06
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (147 bp):
TTTAATTGTTAACTTTATATAATCAAATCAATTCAACTCAATTTTAAATTCCAATTAGAATTAAC
AAATATAGTTATCAAAAAGTAGGCAGCAAGAAGCAATGTTTTCGGAACCAGTTGGATAATTTAAA
TTTAAATTGAACAAGTT
Found at i:45323549 original size:2 final size:2
Alignment explanation
Indices: 45323542--45323567 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
45323532 AATTTTTATG
45323542 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
45323568 GGTATTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45331495 original size:24 final size:23
Alignment explanation
Indices: 45331447--45331492 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
45331437 ACTGCCCCAA
45331447 TTTTTTGACGTCTTATTGGTGGG
1 TTTTTTGACGTCTTATTGGTGGG
*
45331470 TTTTTTGATGTCTTATTGGTGGG
1 TTTTTTGACGTCTTATTGGTGGG
45331493 GTTATCATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.09, C:0.07, G:0.30, T:0.54
Consensus pattern (23 bp):
TTTTTTGACGTCTTATTGGTGGG
Found at i:45335304 original size:20 final size:20
Alignment explanation
Indices: 45335281--45335323 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
45335271 TATTTTACAA
45335281 TTAACTCT-AAATTCTAAATT
1 TTAACTCTAAAATT-TAAATT
* *
45335301 TTAATTTTAAAATTTAAATT
1 TTAACTCTAAAATTTAAATT
45335321 TTA
1 TTA
45335324 CATTTACCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (20 bp):
TTAACTCTAAAATTTAAATT
Found at i:45336034 original size:22 final size:23
Alignment explanation
Indices: 45335995--45336058 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 23
45335985 TTAAATATCA
**
45335995 AATATAATTATTTCTTTTGATAAA-
1 AATATAA-TATTAATTTTGA-AAAG
*
45336019 AATA-AATATTGATTTTGAAAAG
1 AATATAATATTAATTTTGAAAAG
45336041 AATATTAATATTAATTTT
1 AATA-TAATATTAATTTT
45336059 TAATCTTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
21 3 0.09
22 14 0.41
23 2 0.06
24 15 0.44
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (23 bp):
AATATAATATTAATTTTGAAAAG
Found at i:45338167 original size:2 final size:2
Alignment explanation
Indices: 45338162--45338245 Score: 61
Period size: 2 Copynumber: 43.0 Consensus size: 2
45338152 TTAATAAGTG
* * * *
45338162 TA TA TA TA TA TA TA TA TA TA TA TG TA TG T- TA GTA -A AA TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
*
45338203 -A TGA -A TCA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TT TA
1 TA T-A TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45338244 TA
1 TA
45338246 ATTAATATGC
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
1 5 0.08
2 56 0.85
3 5 0.08
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.48
Consensus pattern (2 bp):
TA
Found at i:45341162 original size:13 final size:14
Alignment explanation
Indices: 45341144--45341175 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
45341134 ACTTCCAAAG
45341144 CATATATATATA-A
1 CATATATATATACA
45341157 CATATATATATACA
1 CATATATATATACA
45341171 CATAT
1 CATAT
45341176 TTTTAGGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (14 bp):
CATATATATATACA
Found at i:45349462 original size:2 final size:2
Alignment explanation
Indices: 45349455--45349486 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
45349445 CAAGTTTTGT
45349455 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45349487 GTACTNNNNN
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45350934 original size:25 final size:23
Alignment explanation
Indices: 45350831--45350945 Score: 86
Period size: 23 Copynumber: 4.8 Consensus size: 23
45350821 GCGTCCCATT
* * *
45350831 ATATGGCTCTTCGTCAGCTTCCTG
1 ATATGGCTCTCCG-GAGCTTCCCG
*
45350855 ATTAATGGCTCTCCAGAGCTTCCCG
1 A-T-ATGGCTCTCCGGAGCTTCCCG
* ** *
45350880 ATATGGCTCGCTTGAACTTCCCG
1 ATATGGCTCTCCGGAGCTTCCCG
* *
45350903 ATATGGCTATCCGGAGCTTCCAG
1 ATATGGCTCTCCGGAGCTTCCCG
*
45350926 ATTAATGGCTCTTCGGAGCT
1 A-T-ATGGCTCTCCGGAGCT
45350946 ACCTATTATT
Statistics
Matches: 71, Mismatches: 16, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
23 35 0.49
24 3 0.04
25 24 0.34
26 9 0.13
ACGTcount: A:0.18, C:0.28, G:0.23, T:0.31
Consensus pattern (23 bp):
ATATGGCTCTCCGGAGCTTCCCG
Found at i:45351230 original size:20 final size:21
Alignment explanation
Indices: 45351191--45351231 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
45351181 CGGGTAAAGT
*
45351191 TTTGATATGAGATCATCTTAA
1 TTTGAGATGAGATCATCTTAA
*
45351212 TTTGAGATGA-ATTATCTTAA
1 TTTGAGATGAGATCATCTTAA
45351232 ATGTATAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (21 bp):
TTTGAGATGAGATCATCTTAA
Found at i:45359806 original size:12 final size:12
Alignment explanation
Indices: 45359789--45359813 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45359779 TATTTTATAA
45359789 TTTTTAACCTAT
1 TTTTTAACCTAT
45359801 TTTTTAACCTAT
1 TTTTTAACCTAT
45359813 T
1 T
45359814 CTCTAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTTAACCTAT
Found at i:45361101 original size:5 final size:5
Alignment explanation
Indices: 45361091--45361140 Score: 100
Period size: 5 Copynumber: 10.0 Consensus size: 5
45361081 CCCTACCATA
45361091 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
45361141 TATGAATAGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:45366537 original size:3 final size:3
Alignment explanation
Indices: 45366525--45366585 Score: 115
Period size: 3 Copynumber: 20.7 Consensus size: 3
45366515 ACATGGACTT
45366525 TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
45366572 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
45366586 TGCCTTTTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.04
3 55 0.96
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:45367648 original size:2 final size:2
Alignment explanation
Indices: 45367641--45367665 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
45367631 ATTTTAAATT
45367641 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
45367666 TCTTTTACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45376085 original size:27 final size:27
Alignment explanation
Indices: 45376053--45376104 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
45376043 AACTTTTAAA
*
45376053 GGATTAAA-TCACAATTTTATTATTTTG
1 GGATTAAAGT-ACAATTTTATCATTTTG
*
45376080 GGATTAAAGTATAATTTTATCATTT
1 GGATTAAAGTACAATTTTATCATTT
45376105 ACTAAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.48
Consensus pattern (27 bp):
GGATTAAAGTACAATTTTATCATTTTG
Found at i:45379703 original size:146 final size:145
Alignment explanation
Indices: 45379433--45379704 Score: 395
Period size: 146 Copynumber: 1.9 Consensus size: 145
45379423 GCTTTTGCTC
* * * *
45379433 AAATAATAAAATTGAGAGAGTAAACTTTAAGGTTTATTAGGTATAAATCCATATGTTTTTTTTTA
1 AAATAATAAAATTGAAAGAGTAAACTTTAAGGTTTACTAGATATAAATCCATATGTTTTTTTCTA
*
45379498 GATTTATTAAAATATAAAAAGACATAAATATCCTCAAAATAATATTTATTGATTTATAAAATGAA
66 GATTTATCAAAATATAAAAAGACATAAATATCCTCAAAATAATATTTATTGATTTATAAAATGAA
45379563 ACGAGACTTTTATTA
131 ACGAGACTTTTATTA
* *
45379578 AAATAATAAAATTGAAAGAGTAAACTTTAAGGTTTCCTAGAT-TCGAATCCATATGCTTTTTTTC
1 AAATAATAAAATTGAAAGAGTAAACTTTAAGGTTTACTAGATAT-AAATCCATATG-TTTTTTTC
* * * * *
45379642 TCGATTTATCGAAATATAGAAAGGCATAAATA-CTCTCAAAATAATATTTATTGGTTTATAAAA
64 TAGATTTATCAAAATATAAAAAGACATAAATATC-CTCAAAATAATATTTATTGATTTATAAAA
45379705 CGAATGTGTT
Statistics
Matches: 112, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
144 1 0.01
145 49 0.44
146 62 0.55
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (145 bp):
AAATAATAAAATTGAAAGAGTAAACTTTAAGGTTTACTAGATATAAATCCATATGTTTTTTTCTA
GATTTATCAAAATATAAAAAGACATAAATATCCTCAAAATAATATTTATTGATTTATAAAATGAA
ACGAGACTTTTATTA
Found at i:45382840 original size:31 final size:31
Alignment explanation
Indices: 45382792--45382852 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
45382782 ACAATATGGT
* *
45382792 CATTGAATTATTTAAAAATTTTCATTTAAGC
1 CATTGAACTATTCAAAAATTTTCATTTAAGC
45382823 CATTGAACTATTCAAAAATTTTCATTTAAG
1 CATTGAACTATTCAAAAATTTTCATTTAAG
45382853 TCACCAGGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (31 bp):
CATTGAACTATTCAAAAATTTTCATTTAAGC
Found at i:45391094 original size:6 final size:6
Alignment explanation
Indices: 45391083--45391163 Score: 148
Period size: 6 Copynumber: 13.8 Consensus size: 6
45391073 AAATAAGAGG
45391083 ATACAC ATACAC ATACAC --ACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
45391129 ATACAC ATACAC ATACAC ATACAC ATACAC ATACA
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACA
45391164 TTATATAACT
Statistics
Matches: 73, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.05
6 69 0.95
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.16
Consensus pattern (6 bp):
ATACAC
Found at i:45391217 original size:67 final size:67
Alignment explanation
Indices: 45391135--45391341 Score: 275
Period size: 61 Copynumber: 3.2 Consensus size: 67
45391125 ACACATACAC
45391135 ATACACATACACATACACATACACATACATTATATAACTTAAGGCCAGTAGTTACACAAATAAGA
1 ATACACATACACATACACATACACATACATTATATAACTTAAGGCCAGTAGTTACACAAATAAGA
45391200 G-
66 GA
*
45391201 -----CATACACATACACATACACATACATTATATAACTTAAGGAACAGTAGTTACACAAATAAG
1 ATACACATACACATACACATACACATACATTATATAACTTAAGG-CCAGTAGTTACACAAATAAG
45391261 AGA
65 AGA
* * * * * * *
45391264 ATACACACACACATAGACATACATC-TCCATTATATAACTTACGGCTAGTAGTTATACAAATGAG
1 ATACACATACACATACACATACA-CATACATTATATAACTTAAGGCCAGTAGTTACACAAATAAG
45391328 AGA
65 AGA
45391331 ATACACATACA
1 ATACACATACA
45391342 TACGTATACA
Statistics
Matches: 123, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
61 39 0.32
62 21 0.17
67 29 0.24
68 33 0.27
69 1 0.01
ACGTcount: A:0.46, C:0.21, G:0.10, T:0.23
Consensus pattern (67 bp):
ATACACATACACATACACATACACATACATTATATAACTTAAGGCCAGTAGTTACACAAATAAGA
GA
Found at i:45393888 original size:6 final size:6
Alignment explanation
Indices: 45393879--45393918 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
45393869 TGTATATACT
*
45393879 TGTATA TGTATG TGTATG TGTATG TGTATG TGTATG TGTA
1 TGTATG TGTATG TGTATG TGTATG TGTATG TGTATG TGTA
45393919 CAAGTACGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (6 bp):
TGTATG
Found at i:45394172 original size:145 final size:145
Alignment explanation
Indices: 45393922--45394194 Score: 465
Period size: 145 Copynumber: 1.9 Consensus size: 145
45393912 ATGTGTACAA
**
45393922 GTACGTACATCGCAATGCAACATAATTCTAATTATGTCATGGACATGAAGGATATGAGGGATAGA
1 GTACGTACATCGCAATGCAACATAATTCTAACCATGTCATGGACATGAAGGATATGAGGGATAGA
* * * *
45393987 TGATTCTTTTCGTAAATGTGTTGTTGTTGGTGGTATGATTTGCAGCCAAGTGAATCCTATATGAA
66 TGATTCTTTTCCTAAATGTGCTATTGTTGATGGTATGATTTGCAGCCAAGTGAATCCTATATGAA
45394052 TCTGTATGTATATAT
131 TCTGTATGTATATAT
* *
45394067 GTACGTATATTGCAATGCAACATAATTCTAACCATGTCATGGACATGAAGGATATGAGGGATAGA
1 GTACGTACATCGCAATGCAACATAATTCTAACCATGTCATGGACATGAAGGATATGAGGGATAGA
*
45394132 TGATTCTTTTCCTAAATGTGCTATTGTTGATGGTATGATTTGCAGCCATGTGAATCCTATATG
66 TGATTCTTTTCCTAAATGTGCTATTGTTGATGGTATGATTTGCAGCCAAGTGAATCCTATATG
45394195 TATATGTGTA
Statistics
Matches: 119, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
145 119 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (145 bp):
GTACGTACATCGCAATGCAACATAATTCTAACCATGTCATGGACATGAAGGATATGAGGGATAGA
TGATTCTTTTCCTAAATGTGCTATTGTTGATGGTATGATTTGCAGCCAAGTGAATCCTATATGAA
TCTGTATGTATATAT
Found at i:45396772 original size:16 final size:17
Alignment explanation
Indices: 45396751--45396783 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
45396741 AATGTTTTGG
*
45396751 TTATTT-ATTTTCTTTT
1 TTATTTGATTTTATTTT
45396767 TTATTTGATTTTATTTT
1 TTATTTGATTTTATTTT
45396784 ATGTGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (17 bp):
TTATTTGATTTTATTTT
Found at i:45399092 original size:28 final size:28
Alignment explanation
Indices: 45399035--45399092 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
45399025 TCGTTCTTAT
* **
45399035 TTTGGTCATCCTAAATTTTTTTTGTTAA
1 TTTGGTCACCCTAAATTTTTTTTGCAAA
45399063 TTTGGTCACCCTAAATTTTTTTAT-CAAA
1 TTTGGTCACCCTAAATTTTTTT-TGCAAA
45399091 TT
1 TT
45399093 AATCACTCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 25 0.96
29 1 0.04
ACGTcount: A:0.24, C:0.14, G:0.09, T:0.53
Consensus pattern (28 bp):
TTTGGTCACCCTAAATTTTTTTTGCAAA
Found at i:45403968 original size:18 final size:18
Alignment explanation
Indices: 45403957--45403999 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
45403947 CACCTCCATG
45403957 TCCACCTGCACCACCAGC
1 TCCACCTGCACCACCAGC
*
45403975 TCCACCGGCACCACCAGC
1 TCCACCTGCACCACCAGC
45403993 TCCACCT
1 TCCACCT
45404000 CCTTCACCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.56, G:0.12, T:0.12
Consensus pattern (18 bp):
TCCACCTGCACCACCAGC
Found at i:45404048 original size:69 final size:69
Alignment explanation
Indices: 45403965--45404324 Score: 265
Period size: 69 Copynumber: 5.3 Consensus size: 69
45403955 TGTCCACCTG
** *
45403965 CACCACCAGCTCCACCGGCACCACCAGCTCCACCTCCTTCACCACCCCCACCGCCATATCCAGAA
1 CACCACCATATCCACCGGCACCACCAGCTCCACCTCCTTCACCACCACCACCGCCATATCCAGAA
45404030 GCTC
66 GCTC
* * * * * * * *
45404034 CACCACCATATCCACCTGCACTAGCTCCGCCGCCACC-AC-T-ACCGCCACCACCTCCATGTCC-
1 CACCACCATATCCACCGGCACCA-C-CAG-CTCCACCTCCTTCACCACCACCACCGCCATATCCA
* *
45404095 --ACCTG
63 GAAGCTC
** * *
45404100 CACCACCAGCTCCACCGGCACCACCAGCTCCACCTCCTTCGCCACCTCCACCGCCATATCCAGAA
1 CACCACCATATCCACCGGCACCACCAGCTCCACCTCCTTCACCACCACCACCGCCATATCCAGAA
45404165 GCTC
66 GCTC
* * * ** * * * * *
45404169 CACCACCATATCCACCTGCACTAGCTCCGCCACCACC-ACTACCACCACCACCTCCA-ATTCCAC
1 CACCACCATATCCACCGGCACCACCAGCTCCACCTCCTTC-ACCACCACCACCGCCATA-TCCAG
**
45404232 CCGCT-
64 AAGCTC
* * * * * *
45404237 --CCTCCATACCCGCCGGCACCACCAGCTCCGCCTCCTTCACCACCTCCACCACCATATCCAGAA
1 CACCACCATATCCACCGGCACCACCAGCTCCACCTCCTTCACCACCACCACCGCCATATCCAGAA
45404300 GCTC
66 GCTC
* *
45404304 CACCGCCATATCCACCTGCAC
1 CACCACCATATCCACCGGCAC
45404325 TAGCTCCACC
Statistics
Matches: 211, Mismatches: 64, Indels: 32
0.69 0.21 0.10
Matches are distributed among these distances:
63 6 0.03
64 3 0.01
65 2 0.01
66 83 0.39
67 2 0.01
68 2 0.01
69 102 0.48
70 2 0.01
71 3 0.01
72 6 0.03
ACGTcount: A:0.23, C:0.54, G:0.10, T:0.14
Consensus pattern (69 bp):
CACCACCATATCCACCGGCACCACCAGCTCCACCTCCTTCACCACCACCACCGCCATATCCAGAA
GCTC
Found at i:45404113 original size:18 final size:18
Alignment explanation
Indices: 45404092--45404134 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
45404082 CACCTCCATG
45404092 TCCACCTGCACCACCAGC
1 TCCACCTGCACCACCAGC
*
45404110 TCCACCGGCACCACCAGC
1 TCCACCTGCACCACCAGC
45404128 TCCACCT
1 TCCACCT
45404135 CCTTCGCCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.56, G:0.12, T:0.12
Consensus pattern (18 bp):
TCCACCTGCACCACCAGC
Found at i:45404349 original size:135 final size:135
Alignment explanation
Indices: 45403931--45404341 Score: 673
Period size: 135 Copynumber: 3.0 Consensus size: 135
45403921 NNNNNNNNNG
45403931 CCACCACTACCACCACCACCTCCATGTCCACCTGCACCACCAGCTCCACCGGCACCACCAGCTCC
1 CCACCACTACCACCACCACCTCCATGTCCACCTGCACCACCAGCTCCACCGGCACCACCAGCTCC
*
45403996 ACCTCCTTCACCACCCCCACCGCCATATCCAGAAGCTCCACCACCATATCCACCTGCACTAGCTC
66 ACCTCCTTCACCACCTCCACCGCCATATCCAGAAGCTCCACCACCATATCCACCTGCACTAGCTC
*
45404061 CGCCG
131 CGCCA
*
45404066 CCACCACTACCGCCACCACCTCCATGTCCACCTGCACCACCAGCTCCACCGGCACCACCAGCTCC
1 CCACCACTACCACCACCACCTCCATGTCCACCTGCACCACCAGCTCCACCGGCACCACCAGCTCC
*
45404131 ACCTCCTTCGCCACCTCCACCGCCATATCCAGAAGCTCCACCACCATATCCACCTGCACTAGCTC
66 ACCTCCTTCACCACCTCCACCGCCATATCCAGAAGCTCCACCACCATATCCACCTGCACTAGCTC
45404196 CGCCA
131 CGCCA
* * * * *
45404201 CCACCACTACCACCACCACCTCCAAT-TCCACCCGCTCCTCCATAC-CCGCCGGCACCACCAGCT
1 CCACCACTACCACCACCACCTCC-ATGTCCACCTGCACCACCA-GCTCCACCGGCACCACCAGCT
* * *
45404264 CCGCCTCCTTCACCACCTCCACCACCATATCCAGAAGCTCCACCGCCATATCCACCTGCACTAGC
64 CCACCTCCTTCACCACCTCCACCGCCATATCCAGAAGCTCCACCACCATATCCACCTGCACTAGC
*
45404329 TCCACCA
129 TCCGCCA
45404336 CCACCA
1 CCACCA
45404342 TTGCCACCTC
Statistics
Matches: 259, Mismatches: 15, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
135 256 0.99
136 3 0.01
ACGTcount: A:0.23, C:0.54, G:0.09, T:0.14
Consensus pattern (135 bp):
CCACCACTACCACCACCACCTCCATGTCCACCTGCACCACCAGCTCCACCGGCACCACCAGCTCC
ACCTCCTTCACCACCTCCACCGCCATATCCAGAAGCTCCACCACCATATCCACCTGCACTAGCTC
CGCCA
Found at i:45406302 original size:19 final size:20
Alignment explanation
Indices: 45406267--45406304 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
45406257 AAAATGAATT
45406267 AAATAAAAATTTCATATATA
1 AAATAAAAATTTCATATATA
*
45406287 AAATTAAAATTT-ATATAT
1 AAATAAAAATTTCATATAT
45406305 GACATTGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
AAATAAAAATTTCATATATA
Found at i:45411896 original size:26 final size:26
Alignment explanation
Indices: 45411864--45411918 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
45411854 TGACAATTGT
** *
45411864 TTACTTAATCAAATAATATAATATTA
1 TTACTTAAAAAAACAATATAATATTA
*
45411890 TTACTTAAAAAAACAATTTAATATTA
1 TTACTTAAAAAAACAATATAATATTA
45411916 TTA
1 TTA
45411919 TACATTTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (26 bp):
TTACTTAAAAAAACAATATAATATTA
Found at i:45412485 original size:24 final size:24
Alignment explanation
Indices: 45412458--45412532 Score: 82
Period size: 24 Copynumber: 3.1 Consensus size: 24
45412448 CCCTCATTTG
*
45412458 CACCTCCAGCACCATATGCACCAC
1 CACCTCCACCACCATATGCACCAC
* *
45412482 CACCTCCACCACCAGA-GCCGCCAC
1 CACCTCCACCACCATATG-CACCAC
*
45412506 CACCACCACCACCACT-TGCACCAC
1 CACCTCCACCACCA-TATGCACCAC
45412530 CAC
1 CAC
45412533 TAACACCTCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.02
24 40 0.95
25 1 0.02
ACGTcount: A:0.28, C:0.56, G:0.08, T:0.08
Consensus pattern (24 bp):
CACCTCCACCACCATATGCACCAC
Found at i:45412491 original size:12 final size:12
Alignment explanation
Indices: 45412476--45412532 Score: 51
Period size: 12 Copynumber: 4.8 Consensus size: 12
45412466 GCACCATATG
45412476 CACCACCACCTC
1 CACCACCACCTC
***
45412488 CACCACCAGAGC
1 CACCACCACCTC
* *
45412500 CGCCACCACCAC
1 CACCACCACCTC
* *
45412512 CACCACCACTTG
1 CACCACCACCTC
45412524 CACCACCAC
1 CACCACCAC
45412533 TAACACCTCC
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.28, C:0.60, G:0.07, T:0.05
Consensus pattern (12 bp):
CACCACCACCTC
Found at i:45412649 original size:18 final size:18
Alignment explanation
Indices: 45412628--45412702 Score: 53
Period size: 18 Copynumber: 4.2 Consensus size: 18
45412618 ACTCCCGCCA
*
45412628 CCACCACCACCTCCATGT
1 CCACCACCACCTCCATAT
* * *
45412646 CCACTAGCTCCTCCATAT
1 CCACCACCACCTCCATAT
* * *
45412664 CCAGCTCCACCTCCTTCA-
1 CCACCACCACCTCCAT-AT
* *
45412682 CCACCTCCACTTCCATAT
1 CCACCACCACCTCCATAT
45412700 CCA
1 CCA
45412703 GAAGCTCCAC
Statistics
Matches: 42, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
17 1 0.02
18 40 0.95
19 1 0.02
ACGTcount: A:0.21, C:0.52, G:0.04, T:0.23
Consensus pattern (18 bp):
CCACCACCACCTCCATAT
Found at i:45412711 original size:123 final size:122
Alignment explanation
Indices: 45412584--45413223 Score: 338
Period size: 123 Copynumber: 5.1 Consensus size: 122
45412574 GCATGTGCCC
* *
45412584 CTCCACCACCATATGCTCCTGCACCGCCTCCACCACTCCCGCCACCACCACCACCTCCATGTCCA
1 CTCCACCACCATATGC-CCTGCACCGCCTCCACCACTACCACCACCACCACCACCTCCATGTCCA
* *
45412649 CTAGCTCCTCCATATCCAGCTCCACCTCCTTCACCACCTCCACTTCCATATCCAGAAG
65 CCAGCTCCTCCATAACCAGCTCCACCTCCTTCACCACCTCCACTTCCATATCCAGAAG
* * * * *** *
45412707 CTCCACCACCATATCCACCTGCACTAG-CTCCTCCACCACCATTGCCACCACCACCTCCGTGTCC
1 CTCCACCACCATATGC-CCTGCAC-CGCCTCCACCACTACCACCACCACCACCACCTCCATGTCC
** * * * ** * * **
45412771 ATTAGCTCCTTCATAGCC-GCCACCA-CTACCAGCTCCACCTCC-GTTGCCACCTCCACTGCCAT
64 ACCAGCTCCTCCATAACCAG-CTCCACCT-CCTTCACCACCTCCACTT-CCATATCCA--G--A-
45412833 A-
121 AG
* ** * * * * *
45412834 C-CCAGAAGCACCACCTGCACTAGCTCCGCCTCCACCATTACCGCCACCAGCACCACCTCCATGT
1 CTCC---ACCACCATATGCCCT-GCACCGCCTCCACCACTACCACCACCACCACCACCTCCATGT
* *
45412898 CCACCAGCTCCTCCATAACCACCACCAGCTCCACCTCCTTCGCCACCTCCA-TTGCCATACCCAG
62 CCACCAGCTCCTCCAT----A--ACCAGCTCCACCTCCTTCACCACCTCCACTT-CCATATCCAG
45412962 AAG
120 AAG
* * * * * * *
45412965 ---CACCACC---TGCACTAGCTCCTCCTCTACCACTGCCACCACCAGCACCACCTCCTTGTCCA
1 CTCCACCACCATATGCCCT-GCACCGCCTCCACCACTACCACCACCACCACCACCTCCATGTCCA
* **
45413024 CCGGCTCCTCCATAACCACCACCAGCTCCACCTCCTTCACCACCTCCACCACCATATCCAGAAG
65 CCAGCTCCTCCAT----A--ACCAGCTCCACCTCCTTCACCACCTCCACTTCCATATCCAGAAG
* * * * *
45413088 CTCCACCACCATGTCCACCTGCACTACCTCCCCCACCACCACTACCACTACCACCACCACCTCCA
1 CTCCACCACCATATGC-CCTG--C-A---CCGCCTCCACCACTACCACCACCACCACCACCTCCA
* * * ** *
45413153 TGTCCACCGGCTTCTCCAT-ACCCGCTACCA-CTACCAGCACCACCTCCACTACCATATCCAGAA
59 TGTCCACCAGCTCCTCCATAACCAGCT-CCACCT-CCTTCACCACCTCCACTTCCATATCCAGAA
45413216 G
122 G
*
45413217 CACCACC
1 CTCCACC
45413224 TACACTAGCT
Statistics
Matches: 401, Mismatches: 76, Indels: 74
0.73 0.14 0.13
Matches are distributed among these distances:
122 5 0.01
123 192 0.48
124 1 0.00
125 1 0.00
126 14 0.03
127 2 0.00
128 12 0.03
129 91 0.23
130 3 0.01
131 2 0.00
133 2 0.00
135 73 0.18
136 3 0.01
ACGTcount: A:0.23, C:0.51, G:0.08, T:0.17
Consensus pattern (122 bp):
CTCCACCACCATATGCCCTGCACCGCCTCCACCACTACCACCACCACCACCACCTCCATGTCCAC
CAGCTCCTCCATAACCAGCTCCACCTCCTTCACCACCTCCACTTCCATATCCAGAAG
Found at i:45412923 original size:42 final size:41
Alignment explanation
Indices: 45412863--45413058 Score: 113
Period size: 42 Copynumber: 4.7 Consensus size: 41
45412853 CTAGCTCCGC
* *
45412863 CTCCACCATTACCGCCACCAGCACCACCTCCATGTCCACCAG
1 CTCCTCCA-TACCACCACCAGCACCACCTCCATGTCCACCAG
* * *
45412905 CTCCTCCATAACCACCACCAGCTCCACCTCC-T-T-CGCCAC
1 CTCCTCCAT-ACCACCACCAGCACCACCTCCATGTCCACCAG
** * *
45412944 CTCCATTGCCATA-C-CCAGAAGCACCACCTGCACTAGCTCC-TC--
1 CTCC--T-CCATACCACCACCAGCACCACCTCCA-T-G-TCCACCAG
* * *
45412986 CT-CTACCACTGCCACCACCAGCACCACCTCCTTGTCCACCGG
1 CTCCT-CCA-TACCACCACCAGCACCACCTCCATGTCCACCAG
*
45413028 CTCCTCCATAACCACCACCAGCTCCACCTCC
1 CTCCTCCAT-ACCACCACCAGCACCACCTCC
45413059 TTCACCACCT
Statistics
Matches: 117, Mismatches: 19, Indels: 36
0.68 0.11 0.21
Matches are distributed among these distances:
39 28 0.24
40 5 0.04
41 9 0.08
42 70 0.60
43 2 0.02
44 2 0.02
45 1 0.01
ACGTcount: A:0.22, C:0.53, G:0.09, T:0.17
Consensus pattern (41 bp):
CTCCTCCATACCACCACCAGCACCACCTCCATGTCCACCAG
Found at i:45413079 original size:42 final size:42
Alignment explanation
Indices: 45412997--45413079 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
45412987 TCTACCACTG
** * * *
45412997 CCACCACCAGCACCACCTCCTTGTCCACCGGCTCCTCCATAA
1 CCACCACCAGCACCACCTCCTTCACCACCGCCACCACCATAA
* *
45413039 CCACCACCAGCTCCACCTCCTTCACCACCTCCACCACCATA
1 CCACCACCAGCACCACCTCCTTCACCACCGCCACCACCATA
45413080 TCCAGAAGCT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.23, C:0.55, G:0.06, T:0.16
Consensus pattern (42 bp):
CCACCACCAGCACCACCTCCTTCACCACCGCCACCACCATAA
Found at i:45413130 original size:18 final size:18
Alignment explanation
Indices: 45413109--45413147 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
45413099 TGTCCACCTG
* *
45413109 CACTACCTCCCCCACCAC
1 CACTACCACCACCACCAC
*
45413127 CACTACCACTACCACCAC
1 CACTACCACCACCACCAC
45413145 CAC
1 CAC
45413148 CTCCATGTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.62, G:0.00, T:0.10
Consensus pattern (18 bp):
CACTACCACCACCACCAC
Found at i:45421397 original size:19 final size:19
Alignment explanation
Indices: 45421369--45421407 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
45421359 GATCTAAACA
*
45421369 ATTTCGTCTAAAAACTTAT
1 ATTTCCTCTAAAAACTTAT
45421388 ATTTCCTCTAAAAACTTAT
1 ATTTCCTCTAAAAACTTAT
45421407 A
1 A
45421408 ACATTAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (19 bp):
ATTTCCTCTAAAAACTTAT
Found at i:45427334 original size:5 final size:5
Alignment explanation
Indices: 45427324--45427351 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
45427314 ATTAGCTATT
45427324 GTGGA GTGGA GTGGA GTGGA GTGGA GTG
1 GTGGA GTGGA GTGGA GTGGA GTGGA GTG
45427352 ATAAGAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.61, T:0.21
Consensus pattern (5 bp):
GTGGA
Found at i:45437923 original size:19 final size:19
Alignment explanation
Indices: 45437882--45437923 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
45437872 AATTTTTTTT
*
45437882 TTTTAATCTTTCATCTACT
1 TTTTAATCTTTCATCTACA
*
45437901 TTTTAAT-TGTTCATCTCCA
1 TTTTAATCT-TTCATCTACA
45437920 TTTT
1 TTTT
45437924 TCCTTACTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.19, C:0.19, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTAATCTTTCATCTACA
Found at i:45442108 original size:19 final size:20
Alignment explanation
Indices: 45442084--45442125 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
45442074 TACTTTGATT
* *
45442084 ATATTATTTATT-TTTATTA
1 ATATTATTGATTCTTTAATA
45442103 ATATTATTGATTCTTTAATA
1 ATATTATTGATTCTTTAATA
45442123 ATA
1 ATA
45442126 AAAATTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
ATATTATTGATTCTTTAATA
Found at i:45442147 original size:16 final size:15
Alignment explanation
Indices: 45442116--45442156 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
45442106 TTATTGATTC
*
45442116 TTTAATAATA-AAAA
1 TTTAATTATATAAAA
45442130 TTTAATTCATATAAAA
1 TTTAATT-ATATAAAA
45442146 TTTAATTATAT
1 TTTAATTATAT
45442157 TATTTTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 6 0.25
15 7 0.29
16 11 0.46
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
TTTAATTATATAAAA
Found at i:45444196 original size:14 final size:14
Alignment explanation
Indices: 45444177--45444206 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
45444167 TAATGTTTTC
45444177 AATGTTGGAGTACA
1 AATGTTGGAGTACA
45444191 AATGTTGGAGTACA
1 AATGTTGGAGTACA
45444205 AA
1 AA
45444207 GAAAATCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.07, G:0.27, T:0.27
Consensus pattern (14 bp):
AATGTTGGAGTACA
Found at i:45455609 original size:27 final size:27
Alignment explanation
Indices: 45455540--45455612 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
45455530 GTCGGGTGGC
*
45455540 GCCTCATAGGGAGGCACCATTAAAAGT
1 GCCTCATAGGGAGGCGCCATTAAAAGT
* *
45455567 GTCTCATAAGGAGGCGCCATTAAAAGT
1 GCCTCATAGGGAGGCGCCATTAAAAGT
45455594 GCCTCATAGGGAGGCGCCA
1 GCCTCATAGGGAGGCGCCA
45455613 ATGGGTAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.18
Consensus pattern (27 bp):
GCCTCATAGGGAGGCGCCATTAAAAGT
Found at i:45455666 original size:19 final size:19
Alignment explanation
Indices: 45455617--45456007 Score: 196
Period size: 19 Copynumber: 19.3 Consensus size: 19
45455607 GCGCCAATGG
*
45455617 GTAATTTTGTATGTATATT
1 GTAATTTTGTATGAATATT
45455636 GTAACTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
45455657 ATAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
45455676 GTAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
* * *
45455699 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
*
45455719 GT-ATTTTGTATGAATAGT
1 GTAATTTTGTATGAATATT
45455737 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
45455758 GTAATTTTTTATGAATATT
1 GTAATTTTGTATGAATATT
*
45455777 GTAATTATT-T-T--ATAAT
1 GTAATT-TTGTATGAATATT
* *
45455793 -TAATTTTGTATTTATAGTTTTT
1 GTAATTTTGTA-TGA-A--TATT
45455815 GATTAGTATTTTGTATGAATATT
1 G--TA--ATTTTGTATGAATATT
* *
45455838 ATAATGTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
45455857 GTAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
* * *
45455880 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
45455900 GT-ATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
45455918 GTAATTTTGTATGGATATT
1 GTAATTTTGTATGAATATT
45455937 GTAATATTGTTTGTATGAATATT
1 GT-A-A-T-TTTGTATGAATATT
45455960 GTAATATTGTTTGTATGAATATT
1 GT-A-A-T-TTTGTATGAATATT
45455983 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
45456002 GTAATT
1 GTAATT
45456008 ATTTTATAAT
Statistics
Matches: 295, Mismatches: 33, Indels: 88
0.71 0.08 0.21
Matches are distributed among these distances:
14 2 0.01
15 6 0.02
16 4 0.01
17 11 0.04
18 8 0.03
19 108 0.37
20 31 0.11
21 43 0.15
22 12 0.04
23 49 0.17
24 6 0.02
25 5 0.02
26 2 0.01
27 8 0.03
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.55
Consensus pattern (19 bp):
GTAATTTTGTATGAATATT
Found at i:45455795 original size:101 final size:100
Alignment explanation
Indices: 45455620--45455869 Score: 403
Period size: 101 Copynumber: 2.5 Consensus size: 100
45455610 CCAATGGGTA
* * *
45455620 ATTTTGTATGTATATTGTAACTTTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTATT
1 ATTTTGTATGAATATTGTAA-TTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
45455685 TTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
65 TTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
*
45455721 ATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
1 ATTTTGTATGAATATTGTAA-TTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATT
*
45455786 TTATAATTAATTTTGTATTTATAGTTTTTGATTAGT
65 TTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
* *
45455822 ATTTTGTATGAATATTATAA-TGTTGTATGAATATTGTAATTATTTTAT
1 ATTTTGTATGAATATTGTAATTTTTGTATGAATATTGTAATT-TTTTAT
45455870 AATTAATTTT
Statistics
Matches: 139, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
99 20 0.14
100 6 0.04
101 113 0.81
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.56
Consensus pattern (100 bp):
ATTTTGTATGAATATTGTAATTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTT
TATAATTAATTTTGTATTTATAGTTTTGGATTAGT
Found at i:45455956 original size:42 final size:38
Alignment explanation
Indices: 45455617--45456007 Score: 196
Period size: 42 Copynumber: 9.7 Consensus size: 38
45455607 GCGCCAATGG
*
45455617 GTAATTTTGTATGTATATTGTAACTTTTTGTATGAATATT
1 GTAATTTTGTATGAATATTGTAA--TTTTGTATGAATATT
* *
45455657 ATAATTTTGTATGAATATTGTAATTATTTTAT-AATTAATTTT
1 GTAATTTTGTATGAATATTGTAATT-TTGTATGAA-T-A--TT
* * * *
45455699 GT-ATTTATAGTTTTGGAT-TAGT-ATTTTGTATGAATAGT
1 GTAATTT-T-G-TATGAATATTGTAATTTTGTATGAATATT
*
45455737 GTAATTTTTTGTATGAATATTGTAATTTTTTATGAATATT
1 GTAA--TTTTGTATGAATATTGTAATTTTGTATGAATATT
* * *
45455777 GTAATTATT-T-T--ATAAT-TAATTTTGTATTTATAGTTTTT
1 GTAATT-TTGTATGAATATTGTAATTTTGTA-TGA-A--TATT
* *
45455815 GATTAGTATTTTGTATGAATATTATAATGTTGTATGAATATT
1 G--TA--ATTTTGTATGAATATTGTAATTTTGTATGAATATT
* * * *
45455857 GTAATTATTTTAT-AATTAATTTTGT-ATTTATAGTTTTGGAT-TA
1 GTAATT-TTGTATGAA-T-A--TTGTAATTT-T-G-TATGAATATT
*
45455900 GT-ATTTTGTATGAATATTGTAATTTTGTATGGATATT
1 GTAATTTTGTATGAATATTGTAATTTTGTATGAATATT
45455937 GTAATATTGTTTGTATGAATATTGTAATATTGTTTGTATGAATATT
1 GT-A-A-T-TTTGTATGAATATTGT-A-A-T-TTTGTATGAATATT
45455983 GTAATTTTGTATGAATATTGTAATT
1 GTAATTTTGTATGAATATTGTAATT
45456008 ATTTTATAAT
Statistics
Matches: 271, Mismatches: 32, Indels: 98
0.68 0.08 0.24
Matches are distributed among these distances:
34 9 0.03
35 6 0.02
36 7 0.03
37 5 0.02
38 30 0.11
39 24 0.09
40 50 0.18
41 26 0.10
42 58 0.21
43 11 0.04
44 13 0.05
45 8 0.03
46 24 0.09
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.55
Consensus pattern (38 bp):
GTAATTTTGTATGAATATTGTAATTTTGTATGAATATT
Found at i:45455962 original size:80 final size:80
Alignment explanation
Indices: 45455743--45455941 Score: 353
Period size: 80 Copynumber: 2.5 Consensus size: 80
45455733 TAGTGTAATT
*
45455743 TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
*
45455808 AGTTTTTGATTAGTA
66 AGTTTTGGATTAGTA
* *
45455823 TTTTGTATGAATATTATAATGTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
45455888 AGTTTTGGATTAGTA
66 AGTTTTGGATTAGTA
*
45455903 TTTTGTATGAATATTGTAATTTTGTATGGATATTGTAAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAAT
45455942 ATTGTTTGTA
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 112 1.00
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (80 bp):
TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
AGTTTTGGATTAGTA
Found at i:45456081 original size:60 final size:60
Alignment explanation
Indices: 45456000--45456121 Score: 183
Period size: 60 Copynumber: 2.0 Consensus size: 60
45455990 TGTATGAATA
* * * * *
45456000 TTGTAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGT
1 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
45456060 TTGTAATTA-TTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
1 TTGTAATTATTTTAAAA-TTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
45456120 TT
1 TT
45456122 AGTTTAGTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 6 0.11
60 50 0.89
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.54
Consensus pattern (60 bp):
TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
Found at i:45456275 original size:15 final size:16
Alignment explanation
Indices: 45456239--45456280 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
45456229 CTCATTTAAT
*
45456239 TTTTATATAATGTAAC
1 TTTTATATTATGTAAC
45456255 TTTTATATTATGTAA-
1 TTTTATATTATGTAAC
*
45456270 TTTTATTTTAT
1 TTTTATATTAT
45456281 TTTGTATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (16 bp):
TTTTATATTATGTAAC
Found at i:45457686 original size:25 final size:26
Alignment explanation
Indices: 45457658--45457707 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
45457648 AAAATGTTCT
* *
45457658 AAAATTCTG-AAAAGAAAATGAAAAA
1 AAAAATCTGAAAAAAAAAATGAAAAA
45457683 AAAAATCTGAAAAAAAAAATGAAAA
1 AAAAATCTGAAAAAAAAAATGAAAA
45457708 TGACATCGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.72, C:0.04, G:0.10, T:0.14
Consensus pattern (26 bp):
AAAAATCTGAAAAAAAAAATGAAAAA
Found at i:45457687 original size:12 final size:12
Alignment explanation
Indices: 45457667--45457707 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
45457657 TAAAATTCTG
*
45457667 AAAAGAAAATGA
1 AAAAAAAAATGA
45457679 AAAAAAAAATCTGA
1 AAAAAAAAA--TGA
45457693 AAAAAAAAATGA
1 AAAAAAAAATGA
45457705 AAA
1 AAA
45457708 TGACATCGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 14 0.54
14 12 0.46
ACGTcount: A:0.78, C:0.02, G:0.10, T:0.10
Consensus pattern (12 bp):
AAAAAAAAATGA
Found at i:45465611 original size:81 final size:81
Alignment explanation
Indices: 45465476--45465637 Score: 202
Period size: 81 Copynumber: 2.0 Consensus size: 81
45465466 ATTCTGAAGT
* * * * * * *
45465476 CAACAGCCAAGATACACAAGCATGTGATAAACATCTGCAAAATTTTCCCACTGAAAATTTATTAC
1 CAACAGCCAAGATACACAAGCAAGTGACAAAAATATGCAAAATATTCCCACTGAAAATCTATCAC
*
45465541 AAATTAAAAAATGTAC
66 AAATTAAAAAAGGTAC
*
45465557 CAACAGCCAAGATACACAAGTAAGTGACAAAGAATAT-CAATAA-ATTCCCACTGAAAATCTATC
1 CAACAGCCAAGATACACAAGCAAGTGACAAA-AATATGCAA-AATATTCCCACTGAAAATCTATC
*
45465620 ACAAATTCAAAAAGGTAC
64 ACAAATTAAAAAAGGTAC
45465638 ATTAAGCAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
81 64 0.93
82 5 0.07
ACGTcount: A:0.48, C:0.20, G:0.10, T:0.22
Consensus pattern (81 bp):
CAACAGCCAAGATACACAAGCAAGTGACAAAAATATGCAAAATATTCCCACTGAAAATCTATCAC
AAATTAAAAAAGGTAC
Found at i:45470217 original size:5 final size:5
Alignment explanation
Indices: 45470209--45470234 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
45470199 GAGATGGAAT
45470209 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
45470235 ATATTTGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:45470234 original size:26 final size:26
Alignment explanation
Indices: 45470183--45470234 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
45470173 TGAAGTTTTC
* * *
45470183 TCGAATCGAGTCGAGTGAGATGGAAT
1 TCGAATCGAATCGAATGAGATCGAAT
45470209 TCGAATCGAATCGAATCGA-ATCGAAT
1 TCGAATCGAATCGAAT-GAGATCGAAT
45470235 ATATTTGTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (26 bp):
TCGAATCGAATCGAATGAGATCGAAT
Found at i:45470939 original size:31 final size:30
Alignment explanation
Indices: 45470904--45470963 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
45470894 AGAGGTGGGA
*
45470904 TGGGAAGAGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGAGAATAAAAATTTTAGGGGAAAAG
* * *
45470935 TGGGAGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGAGAATAAAAATTTTAGGGGAAAA
45470964 TAAAAAGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
TGGGAGAGAATAAAAATTTTAGGGGAAAAG
Found at i:45471193 original size:9 final size:9
Alignment explanation
Indices: 45471176--45471212 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
45471166 TATAGTTTGA
45471176 TATTCGAAT
1 TATTCGAAT
*
45471185 TATTTGAAT
1 TATTCGAAT
*
45471194 TATTCGAGT
1 TATTCGAAT
45471203 TATTCGAAT
1 TATTCGAAT
45471212 T
1 T
45471213 CAAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:45474971 original size:15 final size:16
Alignment explanation
Indices: 45474944--45474973 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45474934 ATACAAATTT
45474944 TAAAAAAGTATAAAAC
1 TAAAAAAGTATAAAAC
45474960 TAAAAAAG-ATAAAA
1 TAAAAAAGTATAAAA
45474974 TTACAGTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.73, C:0.03, G:0.07, T:0.17
Consensus pattern (16 bp):
TAAAAAAGTATAAAAC
Found at i:45481663 original size:16 final size:17
Alignment explanation
Indices: 45481630--45481664 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
45481620 AAGACAAAAT
45481630 TAAATAGTTTGAGTGAC
1 TAAATAGTTTGAGTGAC
*
45481647 TAAATAG-TTGGGTGAC
1 TAAATAGTTTGAGTGAC
45481663 TA
1 TA
45481665 CTAGTATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (17 bp):
TAAATAGTTTGAGTGAC
Found at i:45488045 original size:30 final size:31
Alignment explanation
Indices: 45488011--45488078 Score: 79
Period size: 30 Copynumber: 2.2 Consensus size: 31
45488001 TGAACCGCAA
*
45488011 TAAAGTTT-TATATGTATAATTGCACTA-AAT-
1 TAAAGTTTATATAT-TA-AATTGCACAACAATC
*
45488041 TAAAGTTTATGTATTAAATTGCACAACAATC
1 TAAAGTTTATATATTAAATTGCACAACAATC
45488072 TAAAGTT
1 TAAAGTT
45488079 CATGTGTAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 9 0.27
30 13 0.39
31 11 0.33
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (31 bp):
TAAAGTTTATATATTAAATTGCACAACAATC
Found at i:45488060 original size:29 final size:33
Alignment explanation
Indices: 45488011--45488083 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 33
45488001 TGAACCGCAA
* *
45488011 TAAAGTTT-TATATGTATAATTGCACTA-AAT-
1 TAAAGTTTATGTATGTATAATTGCACAACAATC
45488041 TAAAGTTTATGTAT-TA-AATTGCACAACAATC
1 TAAAGTTTATGTATGTATAATTGCACAACAATC
*
45488072 TAAAGTTCATGT
1 TAAAGTTTATGT
45488084 GTAGTTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 9 0.24
30 13 0.35
31 15 0.41
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.40
Consensus pattern (33 bp):
TAAAGTTTATGTATGTATAATTGCACAACAATC
Found at i:45490207 original size:7 final size:8
Alignment explanation
Indices: 45490191--45490216 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
45490181 CCAACCCTTT
45490191 AAAATAAA
1 AAAATAAA
45490199 AAAATAAA
1 AAAATAAA
45490207 AAAATAAA
1 AAAATAAA
45490215 AA
1 AA
45490217 CTATGGGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAATAAA
Found at i:45494197 original size:6 final size:6
Alignment explanation
Indices: 45494186--45494251 Score: 132
Period size: 6 Copynumber: 11.0 Consensus size: 6
45494176 ACAACATCAC
45494186 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
45494234 TATATG TATATG TATATG
1 TATATG TATATG TATATG
45494252 AATGGTGGGA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:45506154 original size:31 final size:32
Alignment explanation
Indices: 45506120--45506181 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
45506110 TTTAAAAAGA
45506120 AAAAAATCTT-AATAGCCAAA-TAACTTAAAT
1 AAAAAATCTTGAATAGCCAAAGTAACTTAAAT
* **
45506150 AAAAAATTTTGAATAGTTAAAGTAACTTAAAT
1 AAAAAATCTTGAATAGCCAAAGTAACTTAAAT
45506182 GAATACTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 9 0.33
31 8 0.30
32 10 0.37
ACGTcount: A:0.55, C:0.08, G:0.06, T:0.31
Consensus pattern (32 bp):
AAAAAATCTTGAATAGCCAAAGTAACTTAAAT
Found at i:45506681 original size:16 final size:16
Alignment explanation
Indices: 45506644--45506681 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
45506634 AGTTTATAAT
45506644 ATTT-TATATTATGTA
1 ATTTATATATTATGTA
45506659 ATTTTTATATATTATGTA
1 A--TTTATATATTATGTA
45506677 ATTTA
1 ATTTA
45506682 GAACGCATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
15 1 0.05
16 4 0.20
17 3 0.15
18 12 0.60
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (16 bp):
ATTTATATATTATGTA
Found at i:45520702 original size:17 final size:17
Alignment explanation
Indices: 45520680--45520722 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
45520670 ATATATATTT
*
45520680 AATATAAGTAATTAAAA
1 AATATAAGTAATAAAAA
*
45520697 AATATATATTAATAAAAA
1 AATATA-AGTAATAAAAA
45520715 AATCATAA
1 AAT-ATAA
45520723 AATGGAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 6 0.27
18 13 0.59
19 3 0.14
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (17 bp):
AATATAAGTAATAAAAA
Found at i:45520724 original size:26 final size:28
Alignment explanation
Indices: 45520666--45520725 Score: 70
Period size: 26 Copynumber: 2.2 Consensus size: 28
45520656 TTAACTTTTT
** *
45520666 AAAAATATATATTTAATATAAGTAATTA
1 AAAAATATATATTTAATATAAAAAATCA
45520694 AAAAATATATA-TTAATA-AAAAAATCA
1 AAAAATATATATTTAATATAAAAAATCA
*
45520720 TAAAAT
1 AAAAAT
45520726 GGAATAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 11 0.39
27 6 0.21
28 11 0.39
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (28 bp):
AAAAATATATATTTAATATAAAAAATCA
Found at i:45520724 original size:28 final size:28
Alignment explanation
Indices: 45520666--45520717 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
45520656 TTAACTTTTT
**
45520666 AAAAATATATATTTAATATAAGTAATTA
1 AAAAATATATATTTAATATAAAAAATTA
45520694 AAAAATATATA-TTAATA-AAAAAAT
1 AAAAATATATATTTAATATAAAAAAT
45520718 CATAAAATGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 6 0.27
28 11 0.50
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (28 bp):
AAAAATATATATTTAATATAAAAAATTA
Found at i:45521229 original size:23 final size:22
Alignment explanation
Indices: 45521199--45521252 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
45521189 CGGATTTTAT
45521199 AATGAATA-TGTTTAACTAAAAAA
1 AATGAATATTGTTT-A-TAAAAAA
45521222 AATGAATATTTGTTTATAAAAAA
1 AATGAATA-TTGTTTATAAAAAA
*
45521245 AATAAATA
1 AATGAATA
45521253 ATAATTTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 22 0.79
24 1 0.04
25 5 0.18
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (22 bp):
AATGAATATTGTTTATAAAAAA
Found at i:45529510 original size:95 final size:94
Alignment explanation
Indices: 45529400--45529667 Score: 423
Period size: 95 Copynumber: 2.8 Consensus size: 94
45529390 GTTTTTTTTA
* *
45529400 TTTTCTTCTTTAATCGGCTGTGTTTTCCATTGAATTTGAATATGTATATATAACTTCGAATCGAT
1 TTTTCTTCTTTAATCGGCTGTATTTTCCATTGAATTTGAATATGTATATATAACTTTGAATCGAT
*
45529465 TTTTTAGCTTCATTGGGATTTTTGGGTTCT
66 TTTTCAGCTTCATTGGGATTTTTGGGTT-T
**
45529495 TTTTCTTCTTTAATCGGCTGTATTTTCCATTGAATTTGAATATGTATATATAACTTTGAATCGCC
1 TTTTCTTCTTTAATCGGCTGTATTTTCCATTGAATTTGAATATGTATATATAACTTTGAATCGAT
45529560 TTTTCAGCTTCATTGGGATTTTTGGGTTT
66 TTTTCAGCTTCATTGGGATTTTTGGGTTT
* *
45529589 TTTCCCCTTCTTTAACCGGCTGTATTTTCCATTGAATTTG-A-ATGTATATATAACTTTGAATCG
1 TTT--TCTTCTTTAATCGGCTGTATTTTCCATTGAATTTGAATATGTATATATAACTTTGAATCG
*
45529652 ATGTTTCAGCTTCATT
64 ATTTTTCAGCTTCATT
45529668 TGCATGCGGG
Statistics
Matches: 161, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
94 39 0.24
95 89 0.55
96 33 0.20
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.49
Consensus pattern (94 bp):
TTTTCTTCTTTAATCGGCTGTATTTTCCATTGAATTTGAATATGTATATATAACTTTGAATCGAT
TTTTCAGCTTCATTGGGATTTTTGGGTTT
Found at i:45539114 original size:30 final size:30
Alignment explanation
Indices: 45539078--45539140 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
45539068 ACTTATTTTA
*
45539078 TTGTTAATTTTATTATTATTTTAAAGACAT
1 TTGTTAAATTTATTATTATTTTAAAGACAT
* * *
45539108 TTGTTAAATTTGTTATTATTTTAGAGGCAT
1 TTGTTAAATTTATTATTATTTTAAAGACAT
45539138 TTG
1 TTG
45539141 CTAGTTAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.29, C:0.03, G:0.13, T:0.56
Consensus pattern (30 bp):
TTGTTAAATTTATTATTATTTTAAAGACAT
Found at i:45539469 original size:6 final size:6
Alignment explanation
Indices: 45539458--45539489 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
45539448 AGTGATCTCT
45539458 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TT
45539490 CACTGCTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTC
Found at i:45540362 original size:10 final size:10
Alignment explanation
Indices: 45540349--45540377 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
45540339 AAATATTTTT
45540349 TAATTTTTAA
1 TAATTTTTAA
45540359 TAA-TTTTAA
1 TAATTTTTAA
45540368 TAATTTTTAA
1 TAATTTTTAA
45540378 ATTTCAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:45540684 original size:12 final size:12
Alignment explanation
Indices: 45540667--45540712 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
45540657 CCTAACTTCA
45540667 AAATTTTTTTTT
1 AAATTTTTTTTT
45540679 AAATTTTTTTATT
1 AAATTTTTTT-TT
***
45540692 AAATTTTACGTT
1 AAATTTTTTTTT
45540704 AAATTTTTT
1 AAATTTTTT
45540713 ATTTTTTTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (12 bp):
AAATTTTTTTTT
Found at i:45540688 original size:13 final size:13
Alignment explanation
Indices: 45540667--45540698 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
45540657 CCTAACTTCA
45540667 AAATTTTTTT-TT
1 AAATTTTTTTATT
45540679 AAATTTTTTTATT
1 AAATTTTTTTATT
45540692 AAATTTT
1 AAATTTT
45540699 ACGTTAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
AAATTTTTTTATT
Found at i:45541384 original size:31 final size:31
Alignment explanation
Indices: 45541348--45541406 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
45541338 CTTTAATTTG
45541348 ATCAATTTTAGTCATTGTACTTTTTGAACCA
1 ATCAATTTTAGTCATTGTACTTTTTGAACCA
*
45541379 ATCAATTTTAGTCATTTTACTTTTTGAA
1 ATCAATTTTAGTCATTGTACTTTTTGAA
45541407 TTTTGAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.29, C:0.14, G:0.08, T:0.49
Consensus pattern (31 bp):
ATCAATTTTAGTCATTGTACTTTTTGAACCA
Found at i:45545345 original size:2 final size:2
Alignment explanation
Indices: 45545338--45545366 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
45545328 TGTAAGGTGT
45545338 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45545367 TCATATTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45549829 original size:30 final size:31
Alignment explanation
Indices: 45549795--45549853 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
45549785 AAGTAACCCC
45549795 TTAAAAA-TAGTAAAAATAT-GATTTAATCAT
1 TTAAAAATTA-TAAAAATATAGATTTAATCAT
45549825 TTAAAAATTATAAAAATATAAGATTTAAT
1 TTAAAAATTATAAAAATAT-AGATTTAAT
45549854 TTCGAACCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 16 0.62
31 2 0.08
32 8 0.31
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (31 bp):
TTAAAAATTATAAAAATATAGATTTAATCAT
Found at i:45550227 original size:2 final size:2
Alignment explanation
Indices: 45550220--45550259 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
45550210 TGTTCCTATC
45550220 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45550260 GTCAAATTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:45553888 original size:80 final size:80
Alignment explanation
Indices: 45553738--45553888 Score: 257
Period size: 80 Copynumber: 1.9 Consensus size: 80
45553728 CTCAAATTTT
* * *
45553738 AAAATATTCTGTAACATAATTTGAAATTAAAATTTTAAAGAAAAGTAAAATGTTCCCACATAACT
1 AAAATATTATGTAACATAATTTGAAATTAAAATTTTAAAGAAAAGTAAAATATTCCCACATAAAT
45553803 ATTAAATAATACGTA
66 ATTAAATAATACGTA
*
45553818 AAAATATTATGTAACATAATTTGAAATTAATATTTTAAAGAAAAGTAAAATATTCCCACATAAAT
1 AAAATATTATGTAACATAATTTGAAATTAAAATTTTAAAGAAAAGTAAAATATTCCCACATAAAT
*
45553883 TTTAAA
66 ATTAAA
45553889 ATTAAAAATT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.51, C:0.09, G:0.07, T:0.34
Consensus pattern (80 bp):
AAAATATTATGTAACATAATTTGAAATTAAAATTTTAAAGAAAAGTAAAATATTCCCACATAAAT
ATTAAATAATACGTA
Found at i:45559011 original size:2 final size:2
Alignment explanation
Indices: 45559006--45559039 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
45558996 CTCCCCCTCC
45559006 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
45559040 TGCTTCTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:45575377 original size:13 final size:13
Alignment explanation
Indices: 45575359--45575383 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45575349 TTTCCATGTG
45575359 CAAGTTTTAGATA
1 CAAGTTTTAGATA
45575372 CAAGTTTTAGAT
1 CAAGTTTTAGAT
45575384 GTTTCGTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (13 bp):
CAAGTTTTAGATA
Found at i:45577138 original size:23 final size:23
Alignment explanation
Indices: 45577112--45577158 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
45577102 GTAATTATAA
45577112 ATAAATGTGTAATAAATATATGT
1 ATAAATGTGTAATAAATATATGT
* *
45577135 ATAAATTTGTAATTAATATATGT
1 ATAAATGTGTAATAAATATATGT
45577158 A
1 A
45577159 CATACTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.43
Consensus pattern (23 bp):
ATAAATGTGTAATAAATATATGT
Found at i:45578201 original size:25 final size:25
Alignment explanation
Indices: 45578173--45578307 Score: 131
Period size: 25 Copynumber: 5.6 Consensus size: 25
45578163 ACTTTAGCGC
* *
45578173 GCTCTGTGATTATTAGCACATCAGT
1 GCTCTCTGATTATTAGCACGTCAGT
*
45578198 GCTCTCTGATTATTAGCACGTTAGT
1 GCTCTCTGATTATTAGCACGTCAGT
*
45578223 GCTCTCTGATTACTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACGTCAGT
* **
45578248 GCTCTCTG--T-TTAGCACATTTGT
1 GCTCTCTGATTATTAGCACGTCAGT
* *
45578270 GCTCTCTG--TA-TAGCACTTTAGT
1 GCTCTCTGATTATTAGCACGTCAGT
45578292 GCTCTCTG-TTCATTAG
1 GCTCTCTGATT-ATTAG
45578308 TGCATGATAA
Statistics
Matches: 95, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
22 36 0.38
23 2 0.02
24 1 0.01
25 56 0.59
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACGTCAGT
Found at i:45578248 original size:50 final size:48
Alignment explanation
Indices: 45578173--45578307 Score: 152
Period size: 50 Copynumber: 2.8 Consensus size: 48
45578163 ACTTTAGCGC
* *
45578173 GCTCTGTGATTATTAGCACATCAGTGCTCTCTGATTATTAGCACGTTAGT
1 GCTCTCTGATTA-TAGCACATCAGTGCTCTCTG-TTATTAGCACATTAGT
* *
45578223 GCTCTCTGATTACTAGCACGTCAGTGCTCTCTG-T-TTAGCACATTTGT
1 GCTCTCTGATTA-TAGCACATCAGTGCTCTCTGTTATTAGCACATTAGT
* *
45578270 GCTCTCTG--TATAGCACTTTAGTGCTCTCTGTTCATTAG
1 GCTCTCTGATTATAGCACATCAGTGCTCTCTGTT-ATTAG
45578308 TGCATGATAA
Statistics
Matches: 75, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
44 18 0.24
45 3 0.04
47 23 0.31
48 1 0.01
50 30 0.40
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (48 bp):
GCTCTCTGATTATAGCACATCAGTGCTCTCTGTTATTAGCACATTAGT
Found at i:45579560 original size:42 final size:42
Alignment explanation
Indices: 45579483--45579565 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
45579473 GTGCTAACAG
* * * * *
45579483 AAACCCATAAGGGTTGAACGGAAGCTCATAGGAGCTGAACGA
1 AAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACGA
45579525 AAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
1 AAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
45579566 GAAAGTAAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.13
Consensus pattern (42 bp):
AAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACGA
Found at i:45582505 original size:6 final size:7
Alignment explanation
Indices: 45582488--45582513 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
45582478 AAAATCCTCA
45582488 AAAAAAG
1 AAAAAAG
45582495 AAAAAAG
1 AAAAAAG
45582502 AAAAAAG
1 AAAAAAG
45582509 AAAAA
1 AAAAA
45582514 CCCAACTACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:45589217 original size:24 final size:25
Alignment explanation
Indices: 45589171--45589222 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
45589161 AGGATTGAAG
*
45589171 TTTGACGTAGAAATTAAATTATATAT
1 TTTGACGTAGAAATTAAAATATA-AT
45589197 TTTGACGT-G-AATTAAAATATAAT
1 TTTGACGTAGAAATTAAAATATAAT
45589220 TTT
1 TTT
45589223 ATTAATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 5 0.20
24 11 0.44
25 1 0.04
26 8 0.32
ACGTcount: A:0.40, C:0.04, G:0.12, T:0.44
Consensus pattern (25 bp):
TTTGACGTAGAAATTAAAATATAAT
Found at i:45592221 original size:28 final size:29
Alignment explanation
Indices: 45592202--45592256 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
45592192 TTATTTTTTT
*
45592202 AATA-TAAATATAATTTTTTTATATTTAA
1 AATAGTAAAAATAATTTTTTTATATTTAA
* *
45592230 AATAGTAAAAATAATTTTATAATATTT
1 AATAGTAAAAATAATTTTTTTATATTT
45592257 TATAATTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (29 bp):
AATAGTAAAAATAATTTTTTTATATTTAA
Found at i:45596491 original size:19 final size:19
Alignment explanation
Indices: 45596467--45596504 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
45596457 ATTTAAAGGA
45596467 TAGTTATTTGATACATAGG
1 TAGTTATTTGATACATAGG
45596486 TAGTTATTTGATACATAGG
1 TAGTTATTTGATACATAGG
45596505 CGGTAAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.42
Consensus pattern (19 bp):
TAGTTATTTGATACATAGG
Found at i:45596919 original size:2 final size:2
Alignment explanation
Indices: 45596912--45596944 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
45596902 CATCTGTCTT
45596912 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45596945 TCTACTATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45600358 original size:23 final size:24
Alignment explanation
Indices: 45600306--45600358 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
45600296 CTAATTTTTT
45600306 TAAT-TTTTGAAAAATATAAAGAA
1 TAATATTTTGAAAAATATAAAGAA
*
45600329 TAA-ATTTTGATAAAATA-AAA-AC
1 TAATATTTTGA-AAAATATAAAGAA
45600351 TAATATTT
1 TAATATTT
45600359 CCATTTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 4 0.15
23 16 0.62
24 6 0.23
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.38
Consensus pattern (24 bp):
TAATATTTTGAAAAATATAAAGAA
Found at i:45609357 original size:12 final size:12
Alignment explanation
Indices: 45609340--45609366 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45609330 GAACCCAATC
45609340 CATTAACACAAA
1 CATTAACACAAA
45609352 CATTAACACAAA
1 CATTAACACAAA
45609364 CAT
1 CAT
45609367 CTCTAGCGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.26, G:0.00, T:0.19
Consensus pattern (12 bp):
CATTAACACAAA
Done.