Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 33 of 150
Found at i:8717160 original size:7 final size:7
Alignment explanation
Indices: 8717141--8717175 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
8717131 CAACTCCATA
8717141 AATATTT
1 AATATTT
8717148 -ATATTT
1 AATATTT
8717154 AATATTT
1 AATATTT
8717161 AATATTT
1 AATATTT
8717168 AATATTT
1 AATATTT
8717175 A
1 A
8717176 TAGACTCGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AATATTT
Found at i:8728736 original size:70 final size:70
Alignment explanation
Indices: 8728655--8728794 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
8728645 GATCTACCTT
8728655 GTAAAATAAAAATTATGAATTGGAGGGTAATAGCTATTTGCCTACCAAATATAATCTATACCAAA
1 GTAAAATAAAAATTATGAATTGGAGGGTAATAGCTATTTGCCTACCAAATATAATCTATACCAAA
8728720 AGAGG
66 AGAGG
8728725 GTAAAATAAAAATTATGAATTGGAGGGTAATAGCTATTTGCCTACCAAATATAATCTATACCAAA
1 GTAAAATAAAAATTATGAATTGGAGGGTAATAGCTATTTGCCTACCAAATATAATCTATACCAAA
8728790 AGAGG
66 AGAGG
8728795 TTAGTAGGAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.27
Consensus pattern (70 bp):
GTAAAATAAAAATTATGAATTGGAGGGTAATAGCTATTTGCCTACCAAATATAATCTATACCAAA
AGAGG
Found at i:8737490 original size:8 final size:8
Alignment explanation
Indices: 8737477--8737504 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
8737467 GTTACAATGA
8737477 AGTAGGTG
1 AGTAGGTG
8737485 AGTAGGTG
1 AGTAGGTG
8737493 AGTAGGTG
1 AGTAGGTG
8737501 AGTA
1 AGTA
8737505 ATCCAAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.46, T:0.25
Consensus pattern (8 bp):
AGTAGGTG
Found at i:8738507 original size:51 final size:51
Alignment explanation
Indices: 8738423--8738528 Score: 142
Period size: 51 Copynumber: 2.1 Consensus size: 51
8738413 ATAGGACCGA
*
8738423 TGTCGTGACATCGGAGGCAATATTGTCACACTCAAGGTAGCTTCAGGGGTG
1 TGTCGTGACATCAGAGGCAATATTGTCACACTCAAGGTAGCTTCAGGGGTG
* ** * *
8738474 TGTCGTGACATTAGAGGCAATA-TGCTCGTACTCAATGTAGCTTTAGGGGTG
1 TGTCGTGACATCAGAGGCAATATTG-TCACACTCAAGGTAGCTTCAGGGGTG
8738525 TGTC
1 TGTC
8738529 ACAACATCCT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
50 2 0.04
51 46 0.96
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (51 bp):
TGTCGTGACATCAGAGGCAATATTGTCACACTCAAGGTAGCTTCAGGGGTG
Found at i:8740446 original size:18 final size:18
Alignment explanation
Indices: 8740423--8740457 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8740413 CAATTTTTAT
8740423 ACTCAAGCTCGAACTTGA
1 ACTCAAGCTCGAACTTGA
*
8740441 ACTCAAGCTCGAGCTTG
1 ACTCAAGCTCGAACTTG
8740458 GCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (18 bp):
ACTCAAGCTCGAACTTGA
Found at i:8740756 original size:19 final size:19
Alignment explanation
Indices: 8740718--8740758 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8740708 TAAAAGTCCT
*
8740718 AAAAATTTTAAAAATGTAA
1 AAAAATTTAAAAAATGTAA
8740737 AAAAATTATAAAAAAT-TAA
1 AAAAATT-TAAAAAATGTAA
8740756 AAA
1 AAA
8740759 TGTAAATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAATTTAAAAAATGTAA
Found at i:8744593 original size:18 final size:18
Alignment explanation
Indices: 8744570--8744604 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8744560 CAAGAATAGT
8744570 AAGCATCAAAATAGTTTC
1 AAGCATCAAAATAGTTTC
*
8744588 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
8744605 GGCACATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:8745507 original size:19 final size:19
Alignment explanation
Indices: 8745485--8745525 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
8745475 AGAAAAGCAT
8745485 AAAAAGTTAAAACAAATTG
1 AAAAAGTTAAAACAAATTG
8745504 AAAAAGTTAAAACAAATTG
1 AAAAAGTTAAAACAAATTG
8745523 AAA
1 AAA
8745526 TAAATTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.66, C:0.05, G:0.10, T:0.20
Consensus pattern (19 bp):
AAAAAGTTAAAACAAATTG
Found at i:8754065 original size:29 final size:29
Alignment explanation
Indices: 8754028--8754083 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
8754018 TTCCACACGG
* *
8754028 CCTAGCCACACAGCCGTGTGGCGCACAGA
1 CCTAACCACACAGCCATGTGGCGCACAGA
*
8754057 CCTAACCACACAGCCATGTGGCTCACA
1 CCTAACCACACAGCCATGTGGCGCACA
8754084 TGGCCTAGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.27, C:0.39, G:0.21, T:0.12
Consensus pattern (29 bp):
CCTAACCACACAGCCATGTGGCGCACAGA
Found at i:8754095 original size:29 final size:28
Alignment explanation
Indices: 8754021--8754102 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 28
8754011 TTGGTGATTC
*
8754021 CACACGGCCTAGCCACACAGCCGTGTGGCG
1 CACA-GGCCTAG-CACACAGCCATGTGGCG
* * *
8754051 CACAGACCTAACCACACAGCCATGTGGCT
1 CACAGGCCT-AGCACACAGCCATGTGGCG
*
8754080 CACATGGCCTAGCACATAGCCAT
1 CACA-GGCCTAGCACACAGCCAT
8754103 ATATTTTTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
29 34 0.79
30 9 0.21
ACGTcount: A:0.27, C:0.38, G:0.22, T:0.13
Consensus pattern (28 bp):
CACAGGCCTAGCACACAGCCATGTGGCG
Found at i:8754195 original size:6 final size:6
Alignment explanation
Indices: 8754186--8754215 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
8754176 GTTTTATATT
8754186 TTTTTG TTTTTG TTTTTG TTTTTGG TTTTT
1 TTTTTG TTTTTG TTTTTG TTTTT-G TTTTT
8754216 TTATTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (6 bp):
TTTTTG
Found at i:8757218 original size:6 final size:6
Alignment explanation
Indices: 8757204--8757237 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
8757194 TTCTACATTG
* *
8757204 GTTGTT GTTGCT GTTGCT GTTGCT GTTGTT GTTG
1 GTTGCT GTTGCT GTTGCT GTTGCT GTTGCT GTTG
8757238 ATGGTTCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.09, G:0.35, T:0.56
Consensus pattern (6 bp):
GTTGCT
Found at i:8757224 original size:12 final size:12
Alignment explanation
Indices: 8757204--8757237 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
8757194 TTCTACATTG
8757204 GTTGTTGTTGCT
1 GTTGTTGTTGCT
*
8757216 GTTGCTGTTGCT
1 GTTGTTGTTGCT
8757228 GTTGTTGTTG
1 GTTGTTGTTG
8757238 ATGGTTCCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.09, G:0.35, T:0.56
Consensus pattern (12 bp):
GTTGTTGTTGCT
Found at i:8767873 original size:27 final size:27
Alignment explanation
Indices: 8767083--8767872 Score: 904
Period size: 27 Copynumber: 29.4 Consensus size: 27
8767073 CCCTAAAAAA
* *
8767083 GGTAAAATGACCAAAATA-CCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
**
8767109 GGTAAAATGACCGAAATACCTGCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* **
8767136 GATAAAATGACCGAAATACCGTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
8767163 GGTAAAATGACCG-AATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
8767189 GGTAAAATGACCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
8767216 GGTAAAATGACTGAAATACCCCAATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*** *
8767243 GGTAAAATGACC-AAATTACCTGAATAA
1 GGTAAAATGACCGAAA-TACCCCCATAG
* *
8767270 GGTAGAATGACCGAAATACCGCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* ** *
8767297 GGTAAAATCACCGAAATA-CCCGGTAC
1 GGTAAAATGACCGAAATACCCCCATAG
*
8767323 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
8767350 GGTAGAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
8767377 GGTAGAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
8767404 GGTAACATGACCGAAATACTCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
8767431 GGTAAAATGACTGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
8767458 GGTAAAATGACTGAAATACCCCTATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
8767485 GATAAAATAACTGAAATACCCCCATGG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * * *
8767512 GGTAGAATGATCGAAATAACCCTATAA
1 GGTAAAATGACCGAAATACCCCCATAG
*
8767539 GGTAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
8767566 GGTAAAATGACCAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
8767593 GGTAAAATGACCAAAATACCCCTATAC
1 GGTAAAATGACCGAAATACCCCCATAG
8767620 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
8767647 GATAGAATGGCCGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
8767674 GGTAGAATGACCGGAATACTCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
8767701 GATAAAATGACCGAAATGCCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* ** *
8767728 GATAAAATGACTAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
8767755 GGTATAATAACCGAAATACACCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
8767782 GATAAAATGACCGAAATACCTCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
8767809 GGTAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
8767836 GGTAAAATGATCGAAATATCCTCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
8767863 GGTAAAATGA
1 GGTAAAATGA
8767873 TTATTATACC
Statistics
Matches: 647, Mismatches: 112, Indels: 9
0.84 0.15 0.01
Matches are distributed among these distances:
26 64 0.10
27 580 0.90
28 3 0.00
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAG
Found at i:8771037 original size:70 final size:70
Alignment explanation
Indices: 8770924--8771063 Score: 208
Period size: 70 Copynumber: 2.0 Consensus size: 70
8770914 CTAATACAAA
* ** * **
8770924 GTTTACAATAACAAGTGAGTTTAAATAAGCTAATAGTAATAATAAAATAATTACAACCTGGCTTA
1 GTTTACAAGAACAAGTGAGCATAAATAAGCTAAAAACAATAATAAAATAATTACAACCTGGCTTA
8770989 ATCTT
66 ATCTT
* *
8770994 GTTTACAAGAACAAGTTAGCATAAATAAGCTAAAAACAATAATAAAATAATTACAACTTGGCTTA
1 GTTTACAAGAACAAGTGAGCATAAATAAGCTAAAAACAATAATAAAATAATTACAACCTGGCTTA
8771059 ATCTT
66 ATCTT
8771064 ACAACTTGAT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.31
Consensus pattern (70 bp):
GTTTACAAGAACAAGTGAGCATAAATAAGCTAAAAACAATAATAAAATAATTACAACCTGGCTTA
ATCTT
Found at i:8771276 original size:17 final size:17
Alignment explanation
Indices: 8771254--8771290 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
8771244 CGTCACAAGT
*
8771254 TTGGTGAGCTTGCAGTC
1 TTGGTGAGCTCGCAGTC
*
8771271 TTGGTGAGCTCGTAGTC
1 TTGGTGAGCTCGCAGTC
8771288 TTG
1 TTG
8771291 ATGAACTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.16, G:0.35, T:0.38
Consensus pattern (17 bp):
TTGGTGAGCTCGCAGTC
Found at i:8775684 original size:17 final size:17
Alignment explanation
Indices: 8775639--8775688 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
8775629 AGTGCGTCAC
*
8775639 AGATTTGGTGAACTCGT
1 AGATTTGGTGAGCTCGT
**
8775656 AG-TCTTCATGAGCTCGT
1 AGAT-TTGGTGAGCTCGT
8775673 AGATTTGGTGAGCTCG
1 AGATTTGGTGAGCTCG
8775689 CAGACTTGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
16 1 0.04
17 24 0.92
18 1 0.04
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (17 bp):
AGATTTGGTGAGCTCGT
Found at i:8776973 original size:26 final size:26
Alignment explanation
Indices: 8776931--8776989 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 26
8776921 ACTTATGAAC
8776931 TTTTTAATATTTGTTTAATTTTAAAA
1 TTTTTAATATTTGTTTAATTTTAAAA
*
8776957 TTTTTGAATATTT-TTTAATTTTCAAA
1 TTTTT-AATATTTGTTTAATTTTAAAA
8776983 TTATTTA
1 TT-TTTA
8776990 CTGACGTTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (26 bp):
TTTTTAATATTTGTTTAATTTTAAAA
Found at i:8777185 original size:2 final size:2
Alignment explanation
Indices: 8777178--8777206 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8777168 TATCAAATTA
8777178 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8777207 AACATTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8777263 original size:23 final size:22
Alignment explanation
Indices: 8777237--8777294 Score: 75
Period size: 23 Copynumber: 2.7 Consensus size: 22
8777227 CCATTATACC
8777237 AAAACAATAATAATGAGAAAAGA
1 AAAACAATAATAATGA-AAAAGA
*
8777260 AAAACAATAATAA-CAAAAAGA
1 AAAACAATAATAATGAAAAAGA
*
8777281 AAAA-AAAAATAATG
1 AAAACAATAATAATG
8777295 GGAGGATCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 7 0.23
21 10 0.32
22 1 0.03
23 13 0.42
ACGTcount: A:0.74, C:0.05, G:0.09, T:0.12
Consensus pattern (22 bp):
AAAACAATAATAATGAAAAAGA
Found at i:8777879 original size:13 final size:13
Alignment explanation
Indices: 8777861--8777887 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8777851 TTTTCATTTT
8777861 TATTATTAAATTA
1 TATTATTAAATTA
8777874 TATTATTAAATTA
1 TATTATTAAATTA
8777887 T
1 T
8777888 GTAATTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTATTAAATTA
Found at i:8782158 original size:21 final size:21
Alignment explanation
Indices: 8782072--8782184 Score: 131
Period size: 21 Copynumber: 5.4 Consensus size: 21
8782062 ACACGCCAAA
*
8782072 AGAAGCTCGTAAGAGCTAAAC
1 AGAAGCTCGTAAGAGCTGAAC
*
8782093 AGGAA-CTTGTAAGAGCTGAAC
1 A-GAAGCTCGTAAGAGCTGAAC
* * *
8782114 AGGAGCTTGTAAGAGTTGAAC
1 AGAAGCTCGTAAGAGCTGAAC
*
8782135 AGAAGCTCGTAAGAGCTTAAC
1 AGAAGCTCGTAAGAGCTGAAC
*
8782156 AGAAGCTC-AATAGAGCTGAAC
1 AGAAGCTCGTA-AGAGCTGAAC
8782177 AGAAGCTC
1 AGAAGCTC
8782185 AAAAGAGTTG
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
20 3 0.04
21 73 0.92
22 3 0.04
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.18
Consensus pattern (21 bp):
AGAAGCTCGTAAGAGCTGAAC
Found at i:8782185 original size:21 final size:21
Alignment explanation
Indices: 8782125--8782191 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
8782115 GGAGCTTGTA
* *
8782125 AGAGTTGAACAGAAGCTC-GT
1 AGAGCTGAACAGAAGCTCAAT
*
8782145 AAGAGCTTAACAGAAGCTCAAT
1 -AGAGCTGAACAGAAGCTCAAT
*
8782167 AGAGCTGAACAGAAGCTCAAA
1 AGAGCTGAACAGAAGCTCAAT
8782188 AGAG
1 AGAG
8782192 TTGATCCACC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 39 0.98
22 1 0.03
ACGTcount: A:0.43, C:0.16, G:0.25, T:0.15
Consensus pattern (21 bp):
AGAGCTGAACAGAAGCTCAAT
Found at i:8782191 original size:63 final size:63
Alignment explanation
Indices: 8782072--8782195 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
8782062 ACACGCCAAA
** * ***
8782072 AGAAGCTCGTAAGAGCTAAACAGGAACTTGTAAGAGCTGAACAGGAGCTTGTAAGAGTTGAAC
1 AGAAGCTCGTAAGAGCTAAACAGGAACTAATAAGAGCTGAACAGAAGCTCAAAAGAGTTGAAC
*
8782135 AGAAGCTCGTAAGAGCTTAACA-GAAGCTCAAT-AGAGCTGAACAGAAGCTCAAAAGAGTTGA
1 AGAAGCTCGTAAGAGCTAAACAGGAA-CT-AATAAGAGCTGAACAGAAGCTCAAAAGAGTTGA
8782196 TCCACCCGAA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 3 0.06
63 48 0.92
64 1 0.02
ACGTcount: A:0.40, C:0.15, G:0.27, T:0.18
Consensus pattern (63 bp):
AGAAGCTCGTAAGAGCTAAACAGGAACTAATAAGAGCTGAACAGAAGCTCAAAAGAGTTGAAC
Found at i:8789923 original size:31 final size:31
Alignment explanation
Indices: 8789886--8789946 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
8789876 TTGGTCATTG
*
8789886 AACTATTCAAAAGTTTTCT-TTTAAGTCACTA
1 AACTATTCAAAAGTTTT-TATTTAAGCCACTA
8789917 AACTATTCAAAAGTTTTTATTTAAGCCACT
1 AACTATTCAAAAGTTTTTATTTAAGCCACT
8789947 GGGTTGTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 1 0.04
31 27 0.96
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.41
Consensus pattern (31 bp):
AACTATTCAAAAGTTTTTATTTAAGCCACTA
Found at i:8810697 original size:50 final size:50
Alignment explanation
Indices: 8810643--8810796 Score: 155
Period size: 50 Copynumber: 3.1 Consensus size: 50
8810633 GTGATGTCGA
* * * *
8810643 GGAAGCAAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTACACCGCCTG
1 GGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCAACGCCTG
* * * ** * * *
8810693 GGAAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAACTGCAATGTCGG
1 GGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCAACGCCTG
* * * *
8810743 GGAAGCAAGATTCACTGATGTGGCTTTAATCTGTTCCACTGCATCGCCTAG
1 GGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCAACGCCT-G
8810794 GGA
1 GGA
8810797 GTAAGAATTG
Statistics
Matches: 79, Mismatches: 24, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
50 75 0.95
51 4 0.05
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (50 bp):
GGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCAACGCCTG
Found at i:8810740 original size:100 final size:100
Alignment explanation
Indices: 8810610--8810811 Score: 273
Period size: 100 Copynumber: 2.0 Consensus size: 100
8810600 GATTTGTAAC
** ** *
8810610 TTGTAGCTTTAATCTGTTTAACTGTGATGTCGAGGAAGCAAGATTCGTTGTTGTAGCTTCAATCT
1 TTGTAGCTTTAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCACTGATGTAGCTTCAATCT
8810675 GTTCCACTACACCGCCT-GGGAAGTAAG-ATTCGCTA
66 GTTCCACTACACCGCCTAGGG-AGTAAGAATT-GCTA
* * * *
8810710 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACTGATGTGGCTTTAATCT
1 TTGTAGCTTTAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCACTGATGTAGCTTCAATCT
* *
8810775 GTTCCACTGCATCGCCTAGGGAGTAAGAATTGCTA
66 GTTCCACTACACCGCCTAGGGAGTAAGAATTGCTA
8810810 TT
1 TT
8810812 CTCAGTCTAC
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
100 83 0.93
101 6 0.07
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (100 bp):
TTGTAGCTTTAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCACTGATGTAGCTTCAATCT
GTTCCACTACACCGCCTAGGGAGTAAGAATTGCTA
Found at i:8811008 original size:132 final size:132
Alignment explanation
Indices: 8810857--8811377 Score: 812
Period size: 132 Copynumber: 3.9 Consensus size: 132
8810847 ACTTGTAATT
* * * *
8810857 TTCAACCTACTACACTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATA
1 TTCAACTTACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
* *
8810922 TTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTACAA
66 TTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
8810987 TC
131 TC
* ** *
8810989 TTCAACTTACTCTGCTGCTGCTCAAAGAGACAAGGTTCGATGGCTTAAATCTGCTTCCCACTATC
1 TTCAACTTACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
* *
8811054 TTGGAAAGATAATATTTGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
66 TTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
8811119 TC
131 TC
* * * *
8811121 TTCAACCTACTCCACCGCTACTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
1 TTCAACTTACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
8811186 TTGGAAAGAT-AGTATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACA
66 TTGGAAAGATAAG-ATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACA
8811250 ATC
130 ATC
* * *
8811253 TTCTAA-TCAACTCCGCTGCTGCTCAGGGAGACAAGATTCGGTGGTTTAAATCTGCTTCCCACTA
1 TTC-AACT-TACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTA
* *
8811317 TCTTGGAAAGATAAGATTTGCCGTCTTTGATTTGCTCCACTACTTCTTAGGGAGATAAGAT
64 TCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
8811378 TTGCTATCTT
Statistics
Matches: 354, Mismatches: 31, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
131 1 0.00
132 243 0.69
133 108 0.31
134 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
TTCAACTTACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
TTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
TC
Found at i:8828648 original size:29 final size:30
Alignment explanation
Indices: 8828602--8828663 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
8828592 ACTTGTTTTA
*
8828602 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTAATTTAGAGGCAT
8828632 TTGTTAA-TTTGTTATTAATTTAGAGGCAT
1 TTGTTAATTTTGTTATTAATTTAGAGGCAT
8828661 TTG
1 TTG
8828664 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 24 0.77
30 7 0.23
ACGTcount: A:0.24, C:0.03, G:0.18, T:0.55
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTAATTTAGAGGCAT
Found at i:8829871 original size:19 final size:18
Alignment explanation
Indices: 8829848--8829887 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8829838 CATCTCTCTT
*
8829848 CTTTAAATACATCTTTTC
1 CTTTTAATACATCTTTTC
* *
8829866 CTTTTAGTACCTCTTTTC
1 CTTTTAATACATCTTTTC
8829884 CTTT
1 CTTT
8829888 CATAAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.25, G:0.03, T:0.55
Consensus pattern (18 bp):
CTTTTAATACATCTTTTC
Found at i:8832107 original size:5 final size:5
Alignment explanation
Indices: 8832092--8832155 Score: 56
Period size: 5 Copynumber: 12.8 Consensus size: 5
8832082 CATACCAGAA
* * * * * * *
8832092 CATAT CTTAT CATAT CACAA CGTAT CATAT TATAT CATAC CATAT CAGAT
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT
*
8832142 CAGAT CATAT CATA
1 CATAT CATAT CATA
8832156 ACATGTCCTA
Statistics
Matches: 45, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.34
Consensus pattern (5 bp):
CATAT
Found at i:8835687 original size:33 final size:34
Alignment explanation
Indices: 8835629--8835717 Score: 90
Period size: 34 Copynumber: 2.6 Consensus size: 34
8835619 TTTTGATATG
*
8835629 ATATGACATTTTGATATGATATATG-TTCTGGAA
1 ATATGACATTCTGATATGATATATGTTTCTGGAA
* * * *
8835662 ATATGATATTCTGATTTGATGTATGTTTCTGGTA
1 ATATGACATTCTGATATGATATATGTTTCTGGAA
* * * *
8835696 TTGTGTCATTCTGATCTGATAT
1 ATATGACATTCTGATATGATAT
8835718 TTGTATGTAT
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
33 21 0.48
34 23 0.52
ACGTcount: A:0.26, C:0.08, G:0.19, T:0.47
Consensus pattern (34 bp):
ATATGACATTCTGATATGATATATGTTTCTGGAA
Found at i:8839902 original size:11 final size:11
Alignment explanation
Indices: 8839886--8839910 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8839876 GCGATTATTG
8839886 TATTTATTGTA
1 TATTTATTGTA
8839897 TATTTATTGTA
1 TATTTATTGTA
8839908 TAT
1 TAT
8839911 AAATGGACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (11 bp):
TATTTATTGTA
Found at i:8843358 original size:23 final size:19
Alignment explanation
Indices: 8843311--8843369 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
8843301 ATATCTATGC
8843311 ATTAATAATACTCTATATA
1 ATTAATAATACTCTATATA
8843330 ATTAATAATACTCTATATA
1 ATTAATAATACTCTATATA
* *
8843349 GATAAATAATAATCTATATA
1 -ATTAATAATACTCTATATA
8843369 A
1 A
8843370 CATAATCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 20 0.54
20 17 0.46
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (19 bp):
ATTAATAATACTCTATATA
Found at i:8843376 original size:14 final size:14
Alignment explanation
Indices: 8843357--8843385 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8843347 TAGATAAATA
8843357 ATAATCTATATAAC
1 ATAATCTATATAAC
8843371 ATAATCTATATAAC
1 ATAATCTATATAAC
8843385 A
1 A
8843386 AAGTAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:8845038 original size:18 final size:18
Alignment explanation
Indices: 8845017--8845051 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8845007 TTATTTATAA
*
8845017 TATTCGTGATATTATTAG
1 TATTCGTAATATTATTAG
*
8845035 TATTTGTAATATTATTA
1 TATTCGTAATATTATTA
8845052 TTAATGATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.03, G:0.11, T:0.54
Consensus pattern (18 bp):
TATTCGTAATATTATTAG
Found at i:8851024 original size:18 final size:19
Alignment explanation
Indices: 8850992--8851031 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
8850982 TTCATGCTAG
* *
8850992 AAATCCCAAATTAAAATCC
1 AAATCCCAAAATAAAACCC
8851011 AAAT-CCAAAATAAAACCC
1 AAATCCCAAAATAAAACCC
8851029 AAA
1 AAA
8851032 AGTTCAGAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.60, C:0.25, G:0.00, T:0.15
Consensus pattern (19 bp):
AAATCCCAAAATAAAACCC
Found at i:8860776 original size:35 final size:35
Alignment explanation
Indices: 8860737--8860808 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
8860727 CTAGCAGTAG
8860737 AAAAGTTTTACACTCATACGAAGGGTGTGTTTGAT
1 AAAAGTTTTACACTCATACGAAGGGTGTGTTTGAT
8860772 AAAAGTTTTACACTCATACGAAGGGTGTGTTTGAT
1 AAAAGTTTTACACTCATACGAAGGGTGTGTTTGAT
8860807 AA
1 AA
8860809 TGCTTAATGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (35 bp):
AAAAGTTTTACACTCATACGAAGGGTGTGTTTGAT
Found at i:8864399 original size:31 final size:31
Alignment explanation
Indices: 8864358--8864490 Score: 109
Period size: 31 Copynumber: 4.4 Consensus size: 31
8864348 TTAATATAAT
*
8864358 ATTTGATACTTGAAA-TTGACATTTTTTCCTA
1 ATTTGGTACTT-AAACTTGACATTTTTTCCTA
8864389 ATTTGGTACTTAAACTT----TTTTTGTCC-A
1 ATTTGGTACTTAAACTTGACATTTTT-TCCTA
* * *
8864416 ATTTCGTA-TCCAAACTTGACACTTTTTCCTA
1 ATTTGGTACT-TAAACTTGACATTTTTTCCTA
* * *
8864447 ATTTGGTACCTAACCTTGACATTTTTTCTTA
1 ATTTGGTACTTAAACTTGACATTTTTTCCTA
* *
8864478 AGTTGATACTTAA
1 ATTTGGTACTTAA
8864491 TCTTTTTTGG
Statistics
Matches: 80, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
26 1 0.01
27 19 0.24
28 3 0.04
30 6 0.08
31 51 0.64
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (31 bp):
ATTTGGTACTTAAACTTGACATTTTTTCCTA
Found at i:8864517 original size:60 final size:60
Alignment explanation
Indices: 8864446--8864558 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 60
8864436 ACTTTTTCCT
* * *
8864446 AATTTGGTACCT-AACCTTGACAT-TTTTTCTTAAGTTGATACTTAATCTTTTTTGGGGTCC
1 AATTTGATACCTGAA-CTTGAC-TCTTTTTCTTAAGTTGACACGTAATCTTTTTTGGGGTCC
* *
8864506 AATTTGATACCTGAACTTGACTCTTTTTCTTAATTTGGCACGTAATCTTTTTT
1 AATTTGATACCTGAACTTGACTCTTTTTCTTAAGTTGACACGTAATCTTTTTT
8864559 TGTTCGGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 1 0.02
60 43 0.93
61 2 0.04
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (60 bp):
AATTTGATACCTGAACTTGACTCTTTTTCTTAAGTTGACACGTAATCTTTTTTGGGGTCC
Found at i:8864540 original size:91 final size:89
Alignment explanation
Indices: 8864373--8864543 Score: 220
Period size: 89 Copynumber: 1.9 Consensus size: 89
8864363 ATACTTGAAA
* * *
8864373 TTGACATTTTTTCCTAATTTGGTACTTAAACTTTTTTTGTCCAATTTCGTATCCAAACTTGACAC
1 TTGACATTTTTTCCTAAGTTGATACTTAAACTTTTTTGGTCCAATTTCGTATCCAAACTTGACAC
8864438 TTTTTCCTAATTTGGTACCTAACC
66 TTTTTCCTAATTTGGTACCTAACC
* * *
8864462 TTGACATTTTTTCTTAAGTTGATACTTAATCTTTTTTGGGGTCCAATTT-G-ATACCTGAACTTG
1 TTGACATTTTTTCCTAAGTTGATACTTAAACTTTTTT--GGTCCAATTTCGTAT-CC-AAACTTG
* *
8864525 ACTCTTTTTCTTAATTTGG
62 ACACTTTTTCCTAATTTGG
8864544 CACGTAATCT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
89 35 0.50
90 3 0.04
91 32 0.46
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.48
Consensus pattern (89 bp):
TTGACATTTTTTCCTAAGTTGATACTTAAACTTTTTTGGTCCAATTTCGTATCCAAACTTGACAC
TTTTTCCTAATTTGGTACCTAACC
Found at i:8866062 original size:29 final size:29
Alignment explanation
Indices: 8866018--8866082 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
8866008 AGACCGTGTG
** *
8866018 GGCACACAGTTGTGTGGCTCATATGGTCT
1 GGCACACAGTCATGTGGCTCATACGGTCT
8866047 GGCACACAGTCATGTGGCTCATACGGTCT
1 GGCACACAGTCATGTGGCTCATACGGTCT
8866076 GGCACAC
1 GGCACAC
8866083 GACTGTCTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (29 bp):
GGCACACAGTCATGTGGCTCATACGGTCT
Found at i:8874224 original size:103 final size:102
Alignment explanation
Indices: 8874037--8874344 Score: 517
Period size: 103 Copynumber: 3.0 Consensus size: 102
8874027 ATTGAATATG
*
8874037 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
* *
8874102 TTTAAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TTTAAATGTGAA-GGGGTTGCTAAGTGCTGATTCCCCC
8874140 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
*
8874205 TTTAAATGTGAAGGTGGTTGCTAAGTGCTGACTCCCCC
66 TTTAAATGTGAAGG-GGTTGCTAAGTGCTGATTCCCCC
* * *
8874243 AAGGGGTTGCTAAGTGCTAATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACCATATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
*
8874308 TTTGAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
66 TTTAAATGTG-AAGGGGTTGCTAAGTGCTGATTCCCC
8874345 GAATCACTGG
Statistics
Matches: 194, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
102 2 0.01
103 188 0.97
104 4 0.02
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (102 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
TTTAAATGTGAAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:8874267 original size:27 final size:28
Alignment explanation
Indices: 8874215--8874268 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
8874205 TTTAAATGTG
*
8874215 AAGGTGGTTGCTAAGTGCTGACTCCCCC
1 AAGGTGGTTGCTAAGTGCTAACTCCCCC
*
8874243 AAGG-GGTTGCTAAGTGCTAATTCCCC
1 AAGGTGGTTGCTAAGTGCTAACTCCCC
8874269 TATTCATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (28 bp):
AAGGTGGTTGCTAAGTGCTAACTCCCCC
Found at i:8875635 original size:25 final size:25
Alignment explanation
Indices: 8875607--8875657 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
8875597 ATCACTTTAA
* *
8875607 TATTAAATTAATATAATATTTATCT
1 TATTAAAATAATAGAATATTTATCT
*
8875632 TATTAAAATAATAGATTATTTATCT
1 TATTAAAATAATAGAATATTTATCT
8875657 T
1 T
8875658 TATATTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (25 bp):
TATTAAAATAATAGAATATTTATCT
Found at i:8875654 original size:20 final size:20
Alignment explanation
Indices: 8875613--8875654 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
8875603 TTAATATTAA
* *
8875613 ATTAATATAATATTTATCTT
1 ATTAAAATAATAATTATCTT
8875633 ATTAAAATAATAGATTAT-TT
1 ATTAAAATAATA-ATTATCTT
8875653 AT
1 AT
8875655 CTTTATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (20 bp):
ATTAAAATAATAATTATCTT
Found at i:8875750 original size:31 final size:29
Alignment explanation
Indices: 8875697--8875795 Score: 81
Period size: 29 Copynumber: 3.1 Consensus size: 29
8875687 ATTTATCTAC
8875697 AAGATAAACATTAAATTTAATTTAATATT
1 AAGATAAACATTAAATTTAATTTAATATT
* *
8875726 AAGATAATCACTTTAATATTAATTTAATAAAATACTATT
1 AAGATAAACA-TTAAAT-TTAA-TT--T---A-A-TATT
*
8875765 AAGATAAATATTAAATTTAATTTAATATT
1 AAGATAAACATTAAATTTAATTTAATATT
8875794 AA
1 AA
8875796 ACTATTAACA
Statistics
Matches: 55, Mismatches: 5, Indels: 20
0.69 0.06 0.25
Matches are distributed among these distances:
29 15 0.27
30 6 0.11
31 5 0.09
32 2 0.04
34 2 0.04
36 2 0.04
37 5 0.09
38 6 0.11
39 12 0.22
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (29 bp):
AAGATAAACATTAAATTTAATTTAATATT
Found at i:8875791 original size:37 final size:37
Alignment explanation
Indices: 8875722--8875813 Score: 107
Period size: 37 Copynumber: 2.4 Consensus size: 37
8875712 TTTAATTTAA
*
8875722 TATTAAGATAATCACTTTAATATTAATTTAATA-AAATAC
1 TATTAAGATAAT-A-TTAAATATTAATTTAATATAAA-AC
*
8875761 TATTAAGATAAATATTAAAT-TTAATTTAATATTAAAC
1 TATTAAGAT-AATATTAAATATTAATTTAATATAAAAC
*
8875798 TATTAACATAATATTA
1 TATTAAGATAATATTA
8875814 TTTTTGGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
36 7 0.15
37 21 0.44
38 7 0.15
39 10 0.21
40 3 0.06
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42
Consensus pattern (37 bp):
TATTAAGATAATATTAAATATTAATTTAATATAAAAC
Found at i:8877438 original size:15 final size:15
Alignment explanation
Indices: 8877414--8877445 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8877404 TATGCATACA
*
8877414 AAATATAAAAGACAT
1 AAATACAAAAGACAT
8877429 AAATACAAAAGACAT
1 AAATACAAAAGACAT
8877444 AA
1 AA
8877446 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:8883747 original size:23 final size:22
Alignment explanation
Indices: 8883705--8883748 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
8883695 AATATTAAAA
8883705 ATATTTTTTATTAACTATTTTAT
1 ATATTTTTTATTAAC-ATTTTAT
8883728 ATATTTTTATAATTAA-ATTTT
1 ATATTTTT-T-ATTAACATTTT
8883749 TAAAATCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 13 0.68
24 1 0.05
25 5 0.26
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
ATATTTTTTATTAACATTTTAT
Found at i:8888836 original size:9 final size:9
Alignment explanation
Indices: 8888822--8888881 Score: 59
Period size: 9 Copynumber: 6.4 Consensus size: 9
8888812 ATTGTTTTAG
8888822 AAAATTTTT
1 AAAATTTTT
8888831 AAAA-TTTT
1 AAAATTTTT
*
8888839 AAATTTTTT
1 AAAATTTTT
*
8888848 ATATATTTTTT
1 A-A-AATTTTT
*
8888859 AGAATTTTT
1 AAAATTTTT
8888868 ATAAATTTTT
1 A-AAATTTTT
8888878 AAAA
1 AAAA
8888882 AATATAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
8 7 0.16
9 19 0.44
10 9 0.21
11 8 0.19
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (9 bp):
AAAATTTTT
Found at i:8888878 original size:10 final size:10
Alignment explanation
Indices: 8888823--8888878 Score: 57
Period size: 10 Copynumber: 5.9 Consensus size: 10
8888813 TTGTTTTAGA
8888823 AAATTTTTA-
1 AAATTTTTAT
8888832 AAA-TTTTA-
1 AAATTTTTAT
*
8888840 AATTTTTTAT
1 AAATTTTTAT
*
8888850 ATATTTTT-T
1 AAATTTTTAT
8888859 AGAATTTTTAT
1 A-AATTTTTAT
8888870 AAATTTTTA
1 AAATTTTTA
8888879 AAAAATATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
8 7 0.18
9 10 0.26
10 20 0.51
11 2 0.05
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (10 bp):
AAATTTTTAT
Found at i:8888884 original size:11 final size:10
Alignment explanation
Indices: 8888816--8888882 Score: 50
Period size: 10 Copynumber: 6.9 Consensus size: 10
8888806 AAAATTATTG
8888816 TTTTAGAAAAT
1 TTTTA-AAAAT
8888827 TTTT-AAAA-
1 TTTTAAAAAT
*
8888835 TTTT-AAATT
1 TTTTAAAAAT
* *
8888844 TTTTATATAT
1 TTTTAAAAAT
* *
8888854 TTTTTAGAAT
1 TTTTAAAAAT
*
8888864 TTTTATAAAT
1 TTTTAAAAAT
8888874 TTTTAAAAA
1 TTTTAAAAA
8888883 ATATAAAATT
Statistics
Matches: 42, Mismatches: 12, Indels: 5
0.71 0.20 0.08
Matches are distributed among these distances:
8 7 0.17
9 8 0.19
10 23 0.55
11 4 0.10
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (10 bp):
TTTTAAAAAT
Found at i:8888920 original size:18 final size:19
Alignment explanation
Indices: 8888899--8888937 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8888889 AATTTGAAAC
* *
8888899 TTTTATAAA-TATTTTGAA
1 TTTTAAAAATTATTTTAAA
8888917 TTTTAAAAATTATTTTAAA
1 TTTTAAAAATTATTTTAAA
8888936 TT
1 TT
8888938 ATTTTTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (19 bp):
TTTTAAAAATTATTTTAAA
Found at i:8891215 original size:19 final size:18
Alignment explanation
Indices: 8891191--8891242 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
8891181 TTCATGCCAT
8891191 TTTTTAAATTTTTATGAAA
1 TTTTTAAATTTTTATG-AA
8891210 TTTTTATATATTTTT-TGAA
1 TTTTTA-A-ATTTTTATGAA
*
8891229 TTTTAAAATTTTTA
1 TTTTTAAATTTTTA
8891243 ATACCTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
17 6 0.21
18 1 0.03
19 13 0.45
20 3 0.10
21 6 0.21
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (18 bp):
TTTTTAAATTTTTATGAA
Found at i:8891222 original size:10 final size:10
Alignment explanation
Indices: 8891189--8891242 Score: 53
Period size: 9 Copynumber: 5.7 Consensus size: 10
8891179 ACTTCATGCC
8891189 ATTTTT-TAA
1 ATTTTTATAA
8891198 ATTTTTATGAA
1 ATTTTTAT-AA
*
8891209 ATTTTTATAT
1 ATTTTTATAA
*
8891219 ATTTTT-TGA
1 ATTTTTATAA
8891228 A-TTTTA-AA
1 ATTTTTATAA
8891236 ATTTTTA
1 ATTTTTA
8891243 ATACCTTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 6 0.16
9 13 0.35
10 8 0.22
11 10 0.27
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (10 bp):
ATTTTTATAA
Found at i:8892819 original size:91 final size:90
Alignment explanation
Indices: 8892644--8892808 Score: 221
Period size: 91 Copynumber: 1.8 Consensus size: 90
8892634 CAGTTATTTA
*
8892644 CAAACACTAGTGGTTTATCTACAAACTTACTGGCAACTTTTATTTGCAAACCTGTGTGCATTCAC
1 CAAACACTAGTGGTTTATCTACAAACTTACTGGCAACTTTTATTTGCAAACCCGTGTGCATTCAC
8892709 AACCTACTGACAACATATTAGCCTG
66 AACCTACTGACAACATATTAGCCTG
* * *
8892734 CAAACACTGGTGGTTTAT-T-CACAACTTTTACTTGCAACTTTTATCTT-CAAACCCGTTGTGTA
1 CAAACACTAGTGGTTTATCTACA-AAC--TTACTGGCAACTTTTAT-TTGCAAACCCG-TGTGCA
8892796 TTCACAA-CTACTG
61 TTCACAACCTACTG
8892809 GCAGCGTATT
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
88 2 0.03
89 4 0.06
90 17 0.26
91 29 0.44
92 14 0.21
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (90 bp):
CAAACACTAGTGGTTTATCTACAAACTTACTGGCAACTTTTATTTGCAAACCCGTGTGCATTCAC
AACCTACTGACAACATATTAGCCTG
Found at i:8895184 original size:43 final size:43
Alignment explanation
Indices: 8895056--8895185 Score: 149
Period size: 43 Copynumber: 3.0 Consensus size: 43
8895046 CATAGGATTC
8895056 CGTTATGTG-TTATCATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTTATGTGATTA-CATGTAAGACCACGTCTAGGACGTTGGCAT
* * * * **
8895099 CGACT-TGTGACTTACGTGTAAGACC-CTGTTTGGGACAATGGCAT
1 CG-TTATGTGA-TTACATGTAAGACCAC-GTCTAGGACGTTGGCAT
8895143 CGTTATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTTATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
8895186 TGTACGAAAT
Statistics
Matches: 69, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
43 34 0.49
44 32 0.46
45 3 0.04
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTTATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
Found at i:8895599 original size:22 final size:21
Alignment explanation
Indices: 8895557--8895599 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
8895547 CTTATTTCGG
* *
8895557 TTTGAATAGATTAATTTTTTT
1 TTTGAATAGATTAAATGTTTT
*
8895578 TTTGTATATGATTAAATGTTTT
1 TTTGAATA-GATTAAATGTTTT
8895600 CGTTGCTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (21 bp):
TTTGAATAGATTAAATGTTTT
Found at i:8899044 original size:3 final size:3
Alignment explanation
Indices: 8899036--8899097 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
8899026 TAAACTAAAT
8899036 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
8899084 AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AA
8899098 TAATAATTGT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:8901247 original size:3 final size:3
Alignment explanation
Indices: 8901239--8901274 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
8901229 AATTTTGGGG
8901239 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8901275 GGTATTTGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8901870 original size:13 final size:14
Alignment explanation
Indices: 8901848--8901885 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
8901838 AAATTCAACC
*
8901848 CTTAATTTTTTAATA
1 CTTAA-TTTTTAACA
8901863 CTT-ATTTTTAACA
1 CTTAATTTTTAACA
8901876 CTTAATTTTT
1 CTTAATTTTT
8901886 CAATTTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 11 0.52
14 7 0.33
15 3 0.14
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (14 bp):
CTTAATTTTTAACA
Found at i:8902117 original size:16 final size:16
Alignment explanation
Indices: 8902096--8902126 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8902086 ATGATCCCAA
8902096 AATATATTTTGAAAAG
1 AATATATTTTGAAAAG
*
8902112 AATATATTTTTAAAA
1 AATATATTTTGAAAA
8902127 ATTAATTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (16 bp):
AATATATTTTGAAAAG
Found at i:8904053 original size:43 final size:43
Alignment explanation
Indices: 8903990--8904172 Score: 305
Period size: 43 Copynumber: 4.3 Consensus size: 43
8903980 CTAACGTTAT
* *
8903990 AAACGCCGCTAAATGTCATGTTCTTTAGCGGCGCTTTTCCCTA-
1 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCC-AC
* *
8904033 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCCTTTCCTAC
1 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
8904076 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
*
8904119 AAACGCCGCTAAAGGCCATGTTCTTTAGCTGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
8904162 AAACGCCGCTA
1 AAACGCCGCTA
8904173 TTGTTTGGTG
Statistics
Matches: 132, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
42 1 0.01
43 131 0.99
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCAC
Found at i:8904737 original size:25 final size:26
Alignment explanation
Indices: 8904681--8904742 Score: 90
Period size: 25 Copynumber: 2.4 Consensus size: 26
8904671 TTTTACAATG
* *
8904681 ATTAAGTTATGTAAATAGTATGAGTT
1 ATTAAGTTATGCAAATAGTATAAGTT
*
8904707 ATTAAGTTATGCATATA-TATAAGTT
1 ATTAAGTTATGCAAATAGTATAAGTT
8904732 ATTAAGTTATG
1 ATTAAGTTATG
8904743 TAAGTTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 18 0.55
26 15 0.45
ACGTcount: A:0.39, C:0.02, G:0.16, T:0.44
Consensus pattern (26 bp):
ATTAAGTTATGCAAATAGTATAAGTT
Found at i:8904867 original size:17 final size:17
Alignment explanation
Indices: 8904845--8904904 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
8904835 ACATATTTTA
8904845 AAATTATTAAGTTATGT
1 AAATTATTAAGTTATGT
* *
8904862 AAATTATGTGAGTTGT-T
1 AAATTAT-TAAGTTATGT
*
8904879 AAGTTATTAAGTTATGT
1 AAATTATTAAGTTATGT
*
8904896 AAGTTATTA
1 AAATTATTA
8904905 TGTGAATTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
16 6 0.17
17 24 0.67
18 6 0.17
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47
Consensus pattern (17 bp):
AAATTATTAAGTTATGT
Found at i:8904890 original size:34 final size:36
Alignment explanation
Indices: 8904848--8904931 Score: 118
Period size: 34 Copynumber: 2.3 Consensus size: 36
8904838 TATTTTAAAA
* *
8904848 TTATTAAGTTATGTAA-ATTATGTGAGTTGT-TAAG
1 TTATTAAGTTATGTAATATTATGTGAATTATATAAG
8904882 TTATTAAGTTATGTAAGTTATTATGTGAATTATATAAG
1 TTATTAAGTTATGTAA--TATTATGTGAATTATATAAG
8904920 TTATTAAGTTAT
1 TTATTAAGTTAT
8904932 ATGGTATGAC
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
34 16 0.36
37 12 0.27
38 16 0.36
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.49
Consensus pattern (36 bp):
TTATTAAGTTATGTAATATTATGTGAATTATATAAG
Found at i:8904900 original size:9 final size:8
Alignment explanation
Indices: 8904848--8904904 Score: 60
Period size: 9 Copynumber: 6.8 Consensus size: 8
8904838 TATTTTAAAA
8904848 TTATTAAG
1 TTATTAAG
*
8904856 TTATGTAAA
1 TTAT-TAAG
*
8904865 TTATGTGAG
1 TTAT-TAAG
*
8904874 TTGTTAAG
1 TTATTAAG
8904882 TTATTAAG
1 TTATTAAG
8904890 TTATGTAAG
1 TTAT-TAAG
8904899 TTATTA
1 TTATTA
8904905 TGTGAATTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 20 0.49
9 21 0.51
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (8 bp):
TTATTAAG
Found at i:8904933 original size:17 final size:17
Alignment explanation
Indices: 8904848--8904933 Score: 66
Period size: 17 Copynumber: 4.8 Consensus size: 17
8904838 TATTTTAAAA
* *
8904848 TTATTAAGTTATGTAAA
1 TTATTAAGTTATATAAG
* *
8904865 TTATGTGAGTTGT-TAAG
1 TTAT-TAAGTTATATAAG
*
8904882 TTATTAAGTTATGTAAG
1 TTATTAAGTTATATAAG
*
8904899 TTATTATGTGAATTATATAAG
1 TTATTA----AGTTATATAAG
8904920 TTATTAAGTTATAT
1 TTATTAAGTTATAT
8904934 GGTATGACAT
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
16 6 0.11
17 28 0.51
18 6 0.11
21 15 0.27
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (17 bp):
TTATTAAGTTATATAAG
Found at i:8906095 original size:8 final size:8
Alignment explanation
Indices: 8906079--8906109 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
8906069 ATTCGGGCCT
*
8906079 ACAATGCA
1 ACAAGGCA
8906087 ACAAGGCA
1 ACAAGGCA
8906095 ACAAGGCA
1 ACAAGGCA
8906103 ACAAGGC
1 ACAAGGC
8906110 CTTCATGAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
ACAAGGCA
Found at i:8906861 original size:785 final size:786
Alignment explanation
Indices: 8905000--8907160 Score: 4065
Period size: 785 Copynumber: 2.7 Consensus size: 786
8904990 AAGTTATTAT
* *
8905000 GTGAATTATATGAGTTATTAAGTTGGAAATTTTTTTTAAGAAAACTAATTAGGGAAACATAGGAA
1 GTGAATTATATAAGTTATTAAGTTGGACA-TTTTTTTAAGAAAACTAATTAGGGAAACATAGGAA
* *
8905065 TAAATACTTTATATTTCCTCAATTTCGAAGCAAATCCTAGAAAAAAAAGACAGAAGTACATTACT
65 TAAATACCTTATATTTCCTCAATTTCGAAGCAAATCCTGGAAAAAAAAGACAGAAGTACATTACT
*
8905130 ACCGAAAAAACAGAAGTAAGAATAACAAAACAGAAGGCAACAGAAGTAAATTTGGCTAATAAACA
130 ACTGAAAAAACAGAAGTAAGAATAACAAAACAGAAGGCAACAGAAGTAAATTTGGCTAATAAACA
8905195 GAAGACAAAAGTGAAGAGCAACTACAGCCTAAATGCGAAAGCAGTATGCGCAAACAAGTTCATAT
195 GAAGACAAAAGTGAAGAGCAACTACAGCCTAAATGCGAAAGCAGTATGCGCAAACAAGTTCATAT
* *
8905260 GAACAAATATTAGAGCCATAGTCATTCGGGCCTACAATGCAACAAGACAACAAGGAAACAAGGCC
260 GAACAAATATTAGAGCCATAGTCATTCGGGCCTACAATGCAACAAGGCAACAAGGCAACAAGGCC
8905325 TTCATGAGGGTGCCACTATTTCAGCTAAGAATCTCAAAGCAACAAGGCAACACAGGAACTACTGC
325 TTCATGAGGGTGCCACTATTTCAGCTAAGAATCTCAAAGCAACAAGGCAACACAGGAACTACTGC
8905390 AGCCTAAATGCAAAATTTAGGAACAAGTAAATAAGGAATTCTTATATTTTAAATAAAAATTTATA
390 AGCCTAAATGCAAAATTTAGGAACAAGTAAATAAGGAATTCTTATATTTTAAATAAAAATTTATA
*
8905455 AATAGTGAGATTTTAACTTAAAAATATATTTAAACCAAAACCATAATTTTAATAATGATTTCCCA
455 AATAGTGAGATTTTAACTTAAAAATATATTTAAACCAAAACCATAATTTTAATAATGATTTCTCA
8905520 AAATTTTAACTTAAAAATATCTTTAAACCATAATTTTATTAGTTGTGATAACATATATACTCAAA
520 AAATTTTAACTTAAAAATATCTTTAAACCATAATTTTATTAGTTGTGATAACATATATACTCAAA
8905585 GAACCATATTCAAACTAGAAGAGCTCCCTTGGGGGGGCGAGGCCGGTTTTACAAGTAACAGTACT
585 GAACCATATTCAAACTAGAAGAGCTCCCTTGGGGGGGCGAGGCCGGTTTTACAAGTAACAGTACT
8905650 GCTACCTTTTTTCCATTCAAGATAGAAGACCTCTAGCTAACTAAAGAAATACCTAATCAAGCCTT
650 GCTACCTTTTTTCCATTCAAGATAGAAGACCTCTAGCTAACTAAAGAAATACCTAATCAAGCCTT
8905715 TTTATAAGAATTCATAGCCATAGAAAAGCAAAGAACCACATTTAATTGCAGTCGTCTAAGTATAA
715 TTTATAAGAATTCATAGCCATAGAAAAGCAAAGAACCACATTTAATTGCAGTCGTCTAAGTATAA
8905780 TATTAAG
780 TATTAAG
*
8905787 GTGAATTATATAAGTTATTAAGTTGGACATTTTTTTAAAGAAAACTAATTCGGGAAACATAGGAA
1 GTGAATTATATAAGTTATTAAGTTGGACATTTTTTT-AAGAAAACTAATTAGGGAAACATAGGAA
8905852 TAAATACCTTATATTTCCTCAATTTCGAAGCAAATCCTGG-AAAAAAAGACAGAAGTACATTACT
65 TAAATACCTTATATTTCCTCAATTTCGAAGCAAATCCTGGAAAAAAAAGACAGAAGTACATTACT
* *
8905916 ACTGAAAAAACAGAAGTAAGAATAACAAAACAGAAGGCAAAAGAAGTAAATTTGACTAATAAACA
130 ACTGAAAAAACAGAAGTAAGAATAACAAAACAGAAGGCAACAGAAGTAAATTTGGCTAATAAACA
* *
8905981 GAAGACAAAAGTGAACAGCAACTACAGCCGAAATGCGAAAGCAGTATGCGCAAACAAGTTCATAT
195 GAAGACAAAAGTGAAGAGCAACTACAGCCTAAATGCGAAAGCAGTATGCGCAAACAAGTTCATAT
8906046 GAACAAATATTAGAGCCATAGTCATTCGGGCCTACAATGCAACAAGGCAACAAGGCAACAAGGCC
260 GAACAAATATTAGAGCCATAGTCATTCGGGCCTACAATGCAACAAGGCAACAAGGCAACAAGGCC
*
8906111 TTCATGAGGGTGCCACTATTTCAGCTAAGAATCTCAAAGCAACAAGGCAACACAGGAACTACTGT
325 TTCATGAGGGTGCCACTATTTCAGCTAAGAATCTCAAAGCAACAAGGCAACACAGGAACTACTGC
*
8906176 AGCCTAAATGCAAAATTTAGGAACAAGTAAATATGGAATTCTTATATTTTAAATAAAAATTTATA
390 AGCCTAAATGCAAAATTTAGGAACAAGTAAATAAGGAATTCTTATATTTTAAATAAAAATTTATA
* *
8906241 AATAGTGATATTTTAACTTAAAAATATATTTAAACCAAAACCATAATTTTAATAATGATTTCTAA
455 AATAGTGAGATTTTAACTTAAAAATATATTTAAACCAAAACCATAATTTTAATAATGATTTCTCA
8906306 AAATTTTAACTTAAAAATATCTTTAAACCATAATTTTATTAGTTGTGATAACATATATACTCAAA
520 AAATTTTAACTTAAAAATATCTTTAAACCATAATTTTATTAGTTGTGATAACATATATACTCAAA
8906371 GAACCATATTCAAACTAGAAGAGCTCCCTT-GGGGGGCGAGGCCGGTTTTACAAGTAACAGTACT
585 GAACCATATTCAAACTAGAAGAGCTCCCTTGGGGGGGCGAGGCCGGTTTTACAAGTAACAGTACT
*
8906435 GCTACCTTTTTTCCATTCAAGATAGAAGACCTCTAGCTAACTAAAGAAATACCTAATCAAGCTTT
650 GCTACCTTTTTTCCATTCAAGATAGAAGACCTCTAGCTAACTAAAGAAATACCTAATCAAGCCTT
8906500 TTTATAAGAATTCATAGCCATAGAAAAGCAAAGAACCACATTTAATTGCAGTCGTCTAAGTATAA
715 TTTATAAGAATTCATAGCCATAGAAAAGCAAAGAACCACATTTAATTGCAGTCGTCTAAGTATAA
8906565 TATTAAG
780 TATTAAG
8906572 GTGAATTATATAAGTTATTAAGTTGGACATTTTTTTAAGAAAACTAATTAGGGAAACATAGGAAT
1 GTGAATTATATAAGTTATTAAGTTGGACATTTTTTTAAGAAAACTAATTAGGGAAACATAGGAAT
8906637 AAATACCTTATATTTCCTCAATTTCGAAGCAAATCCTGGAAAAAAAAGACAGAAGTACATTACTA
66 AAATACCTTATATTTCCTCAATTTCGAAGCAAATCCTGGAAAAAAAAGACAGAAGTACATTACTA
8906702 CTGAAAAAACAGAAGTAAGAATAACAAAACAGAAGGCAACAGAAGTAAATTTGGCTAATAAACAG
131 CTGAAAAAACAGAAGTAAGAATAACAAAACAGAAGGCAACAGAAGTAAATTTGGCTAATAAACAG
8906767 AAGACAAAAGTGAAGAGCAACTACAGCCTAAATGCGAAAGCAGTATGCGCAAACAAGTTCATATG
196 AAGACAAAAGTGAAGAGCAACTACAGCCTAAATGCGAAAGCAGTATGCGCAAACAAGTTCATATG
8906832 AACAAATATTAGAGCCATAGTCATTCGGGCCTACAATGCAACAAGGCAACAAGGCAACAAGGCCT
261 AACAAATATTAGAGCCATAGTCATTCGGGCCTACAATGCAACAAGGCAACAAGGCAACAAGGCCT
* *
8906897 TCATGAGGGTGCCACTGTTTCAGCTAAGAATCTCAAAGCAACAAGGCAACACAGAAACTACTGCA
326 TCATGAGGGTGCCACTATTTCAGCTAAGAATCTCAAAGCAACAAGGCAACACAGGAACTACTGCA
* *
8906962 GACTAAATGCAAAATTTAGGAACAAGTAAATAAGGAATTCTTATATTTTAAATAAGAATTTATAA
391 GCCTAAATGCAAAATTTAGGAACAAGTAAATAAGGAATTCTTATATTTTAAATAAAAATTTATAA
*
8907027 ATAGTGAGATTTTTACTTAAAAATATATTTAAACCAAAACCATAATTTTAATAATGATTTCTCAA
456 ATAGTGAGATTTTAACTTAAAAATATATTTAAACCAAAACCATAATTTTAATAATGATTTCTCAA
*
8907092 AATTTTAACTTAAAAATATCTTTAAACCATAATTTTATTAAGTTGTGATACCATATATACTCAAA
521 AATTTTAACTTAAAAATATCTTTAAACCATAATTTTATT-AGTTGTGATAACATATATACTCAAA
8907157 GAAC
585 GAAC
8907161 NNNNNNNNNN
Statistics
Matches: 1338, Mismatches: 33, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
784 67 0.05
785 647 0.48
786 532 0.40
787 92 0.07
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (786 bp):
GTGAATTATATAAGTTATTAAGTTGGACATTTTTTTAAGAAAACTAATTAGGGAAACATAGGAAT
AAATACCTTATATTTCCTCAATTTCGAAGCAAATCCTGGAAAAAAAAGACAGAAGTACATTACTA
CTGAAAAAACAGAAGTAAGAATAACAAAACAGAAGGCAACAGAAGTAAATTTGGCTAATAAACAG
AAGACAAAAGTGAAGAGCAACTACAGCCTAAATGCGAAAGCAGTATGCGCAAACAAGTTCATATG
AACAAATATTAGAGCCATAGTCATTCGGGCCTACAATGCAACAAGGCAACAAGGCAACAAGGCCT
TCATGAGGGTGCCACTATTTCAGCTAAGAATCTCAAAGCAACAAGGCAACACAGGAACTACTGCA
GCCTAAATGCAAAATTTAGGAACAAGTAAATAAGGAATTCTTATATTTTAAATAAAAATTTATAA
ATAGTGAGATTTTAACTTAAAAATATATTTAAACCAAAACCATAATTTTAATAATGATTTCTCAA
AATTTTAACTTAAAAATATCTTTAAACCATAATTTTATTAGTTGTGATAACATATATACTCAAAG
AACCATATTCAAACTAGAAGAGCTCCCTTGGGGGGGCGAGGCCGGTTTTACAAGTAACAGTACTG
CTACCTTTTTTCCATTCAAGATAGAAGACCTCTAGCTAACTAAAGAAATACCTAATCAAGCCTTT
TTATAAGAATTCATAGCCATAGAAAAGCAAAGAACCACATTTAATTGCAGTCGTCTAAGTATAAT
ATTAAG
Found at i:8906880 original size:8 final size:8
Alignment explanation
Indices: 8906864--8906894 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
8906854 ATTCGGGCCT
*
8906864 ACAATGCA
1 ACAAGGCA
8906872 ACAAGGCA
1 ACAAGGCA
8906880 ACAAGGCA
1 ACAAGGCA
8906888 ACAAGGC
1 ACAAGGC
8906895 CTTCATGAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
ACAAGGCA
Found at i:8907905 original size:21 final size:21
Alignment explanation
Indices: 8907881--8907927 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8907871 TTAACTATTT
* *
8907881 AAATTAGTTAATGATATTGTA
1 AAATTAGATAATGAAATTGTA
* *
8907902 AAATTAGATGATTAAATTGTA
1 AAATTAGATAATGAAATTGTA
8907923 AAATT
1 AAATT
8907928 TCAAATTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (21 bp):
AAATTAGATAATGAAATTGTA
Found at i:8909273 original size:47 final size:48
Alignment explanation
Indices: 8909210--8909308 Score: 146
Period size: 47 Copynumber: 2.1 Consensus size: 48
8909200 CATAGTTTTG
* * **
8909210 TTTAGGTAATATTTATAAAAATTAGATAAAATTATCAATTTTAGT-TT
1 TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAATTTTAGTGTT
*
8909257 TTTAAGTAATATTTATAAAAATTAGGTAAAAATAAAAATTTTAGTGTT
1 TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAATTTTAGTGTT
8909305 TTTA
1 TTTA
8909309 TTTCTTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
47 40 0.87
48 6 0.13
ACGTcount: A:0.44, C:0.01, G:0.09, T:0.45
Consensus pattern (48 bp):
TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAATTTTAGTGTT
Found at i:8909346 original size:9 final size:9
Alignment explanation
Indices: 8909332--8909380 Score: 73
Period size: 9 Copynumber: 5.4 Consensus size: 9
8909322 TTTCTTTTAT
*
8909332 TTTTTATAA
1 TTTTTACAA
8909341 TTTTTACAA
1 TTTTTACAA
8909350 TTTTTTACAA
1 -TTTTTACAA
8909360 -TTTTACAA
1 TTTTTACAA
8909368 TTTTTACAA
1 TTTTTACAA
8909377 TTTT
1 TTTT
8909381 AAATTATTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
8 8 0.22
9 20 0.54
10 9 0.24
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTTTACAA
Found at i:8909352 original size:19 final size:18
Alignment explanation
Indices: 8909330--8909385 Score: 80
Period size: 17 Copynumber: 3.2 Consensus size: 18
8909320 TTTTTCTTTT
*
8909330 ATTTTTTATAATTTTTACA
1 ATTTTTTACAA-TTTTACA
8909349 ATTTTTTACAATTTTACA
1 ATTTTTTACAATTTTACA
8909367 A-TTTTTACAATTTTA-A
1 ATTTTTTACAATTTTACA
8909383 ATT
1 ATT
8909386 ATTATATTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
16 2 0.06
17 15 0.43
18 8 0.23
19 10 0.29
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTTTACAATTTTACA
Found at i:8909353 original size:8 final size:8
Alignment explanation
Indices: 8909342--8909385 Score: 54
Period size: 8 Copynumber: 5.2 Consensus size: 8
8909332 TTTTTATAAT
8909342 TTTTACAA
1 TTTTACAA
8909350 TTTTTTACAA
1 --TTTTACAA
8909360 TTTTACAA
1 TTTTACAA
8909368 TTTTTACAA
1 -TTTTACAA
8909377 TTTTA-AA
1 TTTTACAA
8909384 TT
1 TT
8909386 ATTATATTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
7 4 0.12
8 13 0.39
9 8 0.24
10 8 0.24
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (8 bp):
TTTTACAA
Found at i:8909399 original size:21 final size:20
Alignment explanation
Indices: 8909374--8909428 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 20
8909364 ACAATTTTTA
8909374 CAATTTTAAATTATT-ATATT
1 CAATTTTAAATTATTCATA-T
*
8909394 CAAATTATTATA-TATTGCATAT
1 C-AATT-TTAAATTATT-CATAT
8909416 CAATTTTAAATTA
1 CAATTTTAAATTA
8909429 ATAATCTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
20 5 0.18
21 14 0.50
22 6 0.21
23 3 0.11
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.49
Consensus pattern (20 bp):
CAATTTTAAATTATTCATAT
Found at i:8909555 original size:7 final size:7
Alignment explanation
Indices: 8909543--8909583 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
8909533 GACCCCAAAT
8909543 CCCTAAC
1 CCCTAAC
8909550 CCCTAAC
1 CCCTAAC
*
8909557 CCCTAAA
1 CCCTAAC
*
8909564 CCCTAAA
1 CCCTAAC
*
8909571 CCATAAC
1 CCCTAAC
8909578 CCCTAA
1 CCCTAA
8909584 ACCTTATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.37, C:0.49, G:0.00, T:0.15
Consensus pattern (7 bp):
CCCTAAC
Found at i:8909560 original size:14 final size:14
Alignment explanation
Indices: 8909534--8909586 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
8909524 CCCTAACCCG
8909534 ACCCC-AAATCCCTA
1 ACCCCTAAA-CCCTA
*
8909548 ACCCCTAACCCCTA
1 ACCCCTAAACCCTA
* *
8909562 AACCCTAAACCATA
1 ACCCCTAAACCCTA
8909576 ACCCCTAAACC
1 ACCCCTAAACC
8909587 TTATTTAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
14 31 0.94
15 2 0.06
ACGTcount: A:0.38, C:0.49, G:0.00, T:0.13
Consensus pattern (14 bp):
ACCCCTAAACCCTA
Found at i:8909567 original size:21 final size:20
Alignment explanation
Indices: 8909521--8909586 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 20
8909511 TCTAAATTTC
*
8909521 AAACCCTAACCC-GACCCC-
1 AAACCCTAACCCTAACCCCT
8909539 AAATCCCTAACCCCTAACCCCT
1 AAA-CCCTAA-CCCTAACCCCT
*
8909561 AAACCCTAAACCATAACCCCT
1 AAACCCT-AACCCTAACCCCT
8909582 AAACC
1 AAACC
8909587 TTATTTAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
18 3 0.07
19 6 0.15
20 3 0.07
21 24 0.59
22 5 0.12
ACGTcount: A:0.38, C:0.48, G:0.02, T:0.12
Consensus pattern (20 bp):
AAACCCTAACCCTAACCCCT
Found at i:8909693 original size:7 final size:7
Alignment explanation
Indices: 8909683--8909722 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
8909673 CTCTTAACAT
8909683 CTAACCC
1 CTAACCC
8909690 CTAA--C
1 CTAACCC
8909695 CTAACCC
1 CTAACCC
8909702 CTAACCC
1 CTAACCC
8909709 CTAACCC
1 CTAACCC
8909716 CTAACCC
1 CTAACCC
8909723 ATAAACCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 5 0.16
7 26 0.84
ACGTcount: A:0.30, C:0.55, G:0.00, T:0.15
Consensus pattern (7 bp):
CTAACCC
Found at i:8909694 original size:14 final size:12
Alignment explanation
Indices: 8909683--8909721 Score: 60
Period size: 12 Copynumber: 3.1 Consensus size: 12
8909673 CTCTTAACAT
8909683 CTAACCCCTAAC
1 CTAACCCCTAAC
8909695 CTAACCCCTAACCC
1 CTAACCCCTAA--C
8909709 CTAACCCCTAAC
1 CTAACCCCTAAC
8909721 C
1 C
8909722 CATAAACCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 13 0.52
14 12 0.48
ACGTcount: A:0.31, C:0.54, G:0.00, T:0.15
Consensus pattern (12 bp):
CTAACCCCTAAC
Found at i:8909706 original size:26 final size:26
Alignment explanation
Indices: 8909668--8909721 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
8909658 ACCCTAAATC
* * *
8909668 CCTAACTCTTAACATCTAACCCCTAA
1 CCTAACCCCTAACACCTAACCCCTAA
*
8909694 CCTAACCCCTAACCCCTAACCCCTAA
1 CCTAACCCCTAACACCTAACCCCTAA
8909720 CC
1 CC
8909722 CATAAACCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.48, G:0.00, T:0.20
Consensus pattern (26 bp):
CCTAACCCCTAACACCTAACCCCTAA
Found at i:8910482 original size:80 final size:81
Alignment explanation
Indices: 8910347--8910510 Score: 249
Period size: 80 Copynumber: 2.0 Consensus size: 81
8910337 TTTTAAATCC
* * * *
8910347 TTGAGCATTAGCGGCGCATCCTTAAAAACGCCGCTAAATCCTCGAAAGCTAAGAAAACGACGTCG
1 TTGAGCATTAGCGGCGCATACTTAAAAACGCCACCAAATCCCCGAAAGCTAAGAAAACGACGTCG
8910412 TTGGGCTTAGGT-TTT
66 TTGGGCTTAGGTATTT
* * * *
8910427 TTGAGCATTATCGGTGCTTACTTAAAAACGCCACCAAATCCCCGAAAGCTCAGAAAACGACGTCG
1 TTGAGCATTAGCGGCGCATACTTAAAAACGCCACCAAATCCCCGAAAGCTAAGAAAACGACGTCG
8910492 TTGGGCTTAGGTATTT
66 TTGGGCTTAGGTATTT
8910508 TTG
1 TTG
8910511 CGGCACTTTC
Statistics
Matches: 75, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 69 0.92
81 6 0.08
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (81 bp):
TTGAGCATTAGCGGCGCATACTTAAAAACGCCACCAAATCCCCGAAAGCTAAGAAAACGACGTCG
TTGGGCTTAGGTATTT
Found at i:8910627 original size:114 final size:114
Alignment explanation
Indices: 8910428--8911305 Score: 1132
Period size: 114 Copynumber: 8.0 Consensus size: 114
8910418 TTAGGTTTTT
* * * *
8910428 TGAGCATTATCGGTGCTTACTTAAAAACGCCACCAAATCCCCGAAAGCTCAGAAAACGACGTCGT
1 TGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGT
* *
8910493 TGGGCTTAGGTATTTTTGCGGCACTTTCCCAAAAACGCCGCTAAAGCCT
66 TGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
* * * * *
8910542 TGAGCATTAGCGGCGCTTCCTTAAAAACGCCATTAAATCCTCGAAAGCTTAGAAAACGGCATCGT
1 TGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGT
* *
8910607 TGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAACACCGCT-AA----
66 TGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
*
8910651 --AGC---A----CGCTTACTTAAAAACGCCACTAAATCCCTGAAAGCTCAGAAAACGGCGTCGT
1 TGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGT
* *
8910707 TGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAATGCCGCTAAATCCC
66 TGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
* *
8910756 TGAGCATTAGCGGCGCTTACTTAAAAAAGCCACTAAATCCCCGAAAGCTTAGAAAACGGCGTCGT
1 TGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGT
*
8910821 TGGGCCTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCT-AA----
66 TGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
* **
8910865 --AGC--T-----CGCTTACTTAAAAACGCCACTAAATCCTCGAAAGCTCAGAAAACGGCGTTAT
1 TGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGT
* * *
8910921 TGGGCTTACGTGTTTTTGCGACGCTTTCCCAAAAACGCCGCTAAAGCCC
66 TGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
* * *
8910970 TGAGCATTAGCGGCGCTTACTTAAAAACGCCACAAAATCCCTGAAAGCTCAGAAAACGACGTCGT
1 TGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGT
8911035 TGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
66 TGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
*
8911084 TGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAATGGCGTCGT
1 TGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGT
* * * *
8911149 TGGGCTTAGGTTTTTTTGTGGCGCTTTCTCAAAAACGCTGCTAAAGCCC
66 TGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
* * * * * *
8911198 TGAGCATTAGCGGCGCTTTCTTAAAAATGCCGCTAAATCCCCGAAAGCTC-GAAAAACGACATTG
1 TGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAG-AAAACGGCGTCG
* * * ***
8911262 TTGGGCTTAGGTA-CTTTGCGACACTTTCTGGAAAACGCCGCTAA
65 TTGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAA
8911306 TGCTTATTTT
Statistics
Matches: 668, Mismatches: 67, Indels: 59
0.84 0.08 0.07
Matches are distributed among these distances:
100 170 0.25
101 4 0.01
104 1 0.00
105 1 0.00
107 12 0.02
109 1 0.00
110 1 0.00
113 29 0.04
114 449 0.67
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (114 bp):
TGAGCATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGT
TGGGCTTAGGTATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCC
Found at i:8910811 original size:214 final size:214
Alignment explanation
Indices: 8910442--8911305 Score: 1183
Period size: 214 Copynumber: 4.0 Consensus size: 214
8910432 CATTATCGGT
* *
8910442 GCTTACTTAAAAACGCCACCAAATCCCCGAAAGCTCAGAAAACGACGTCGTTGGGCTTAGGTATT
1 GCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATT
* * *
8910507 TTTGCGGCACTTTCCCAAAAACGCCGCTAAAGCCTTGAGCATTAGCGGCGCTTCCTTAAAAACGC
66 TTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACGC
* * * *
8910572 CATTAAATCCTCGAAAGCTTAGAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCC
131 CACTAAATCCCCGAAAGCTTAGAAAACGACATCGTTGGGCTTAGGTATTTTTGCGGCGCTTTCCC
*
8910637 AAAAACACCGCTAAAGCAC
196 AAAAACGCCGCTAAAGCAC
*
8910656 GCTTACTTAAAAACGCCACTAAATCCCTGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATT
1 GCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATT
* * *
8910721 TTTGCGGCGCTTTCCCAAAAATGCCGCTAAATCCCTGAGCATTAGCGGCGCTTACTTAAAAAAGC
66 TTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACGC
* * *
8910786 CACTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCCTAGGTATTTTTGCGGCGCTTTCCC
131 CACTAAATCCCCGAAAGCTTAGAAAACGACATCGTTGGGCTTAGGTATTTTTGCGGCGCTTTCCC
*
8910851 AAAAACGCCGCTAAAGCTC
196 AAAAACGCCGCTAAAGCAC
* ** * *
8910870 GCTTACTTAAAAACGCCACTAAATCCTCGAAAGCTCAGAAAACGGCGTTATTGGGCTTACGTGTT
1 GCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATT
*
8910935 TTTGCGACGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACGC
66 TTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACGC
* * * *
8911000 CACAAAATCCCTGAAAGCTCAGAAAACGACGTCGTTGGGCTTAGGTATTTTTGCGGCGCTTTCCC
131 CACTAAATCCCCGAAAGCTTAGAAAACGACATCGTTGGGCTTAGGTATTTTTGCGGCGCTTTCCC
8911065 AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGC
196 AAAAACGCCGCT-AA------AGC---A----C
* *
8911098 GCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAATGGCGTCGTTGGGCTTAGGTTTT
1 GCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATT
* * * * *
8911163 TTTGTGGCGCTTTCTCAAAAACGCTGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAATGC
66 TTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACGC
* * * * * * *
8911228 CGCTAAATCCCCGAAAGC-TCGAAAAACGACATTGTTGGGCTTAGGTA-CTTTGCGACACTTTCT
131 CACTAAATCCCCGAAAGCTTAG-AAAACGACATCGTTGGGCTTAGGTATTTTTGCGGCGCTTTCC
**
8911291 GGAAAACGCCGCTAA
195 CAAAAACGCCGCTAA
8911306 TGCTTATTTT
Statistics
Matches: 578, Mismatches: 57, Indels: 18
0.89 0.09 0.03
Matches are distributed among these distances:
214 390 0.67
215 2 0.00
221 3 0.01
226 2 0.00
227 24 0.04
228 157 0.27
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (214 bp):
GCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTATT
TTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTACTTAAAAACGC
CACTAAATCCCCGAAAGCTTAGAAAACGACATCGTTGGGCTTAGGTATTTTTGCGGCGCTTTCCC
AAAAACGCCGCTAAAGCAC
Found at i:8915829 original size:25 final size:25
Alignment explanation
Indices: 8915801--8915849 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8915791 GCAAACATGT
* * *
8915801 AAACATGAAGCTCTTTTGAGCCATA
1 AAACAGGAAGCTCATGTGAGCCATA
*
8915826 AAACGGGAAGCTCATGTGAGCCAT
1 AAACAGGAAGCTCATGTGAGCCAT
8915850 GTAACGAGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (25 bp):
AAACAGGAAGCTCATGTGAGCCATA
Found at i:8915855 original size:25 final size:24
Alignment explanation
Indices: 8915807--8915889 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 24
8915797 ATGTAAACAT
* * *
8915807 GAAGCTCTTTTGAGCCATAAAACGG
1 GAAGCTCATGTGAGCCAT-TAACGG
*
8915832 GAAGCTCATGTGAGCCATGTAACGA
1 GAAGCTCATGTGAGCCAT-TAACGG
**
8915857 GAAGCTC-TAGAAAGCCATTAACGG
1 GAAGCTCAT-GTGAGCCATTAACGG
8915881 GAAGCTCAT
1 GAAGCTCAT
8915890 ACTAGCTAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
24 13 0.27
25 35 0.73
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (24 bp):
GAAGCTCATGTGAGCCATTAACGG
Found at i:8920571 original size:78 final size:77
Alignment explanation
Indices: 8920394--8920572 Score: 223
Period size: 78 Copynumber: 2.3 Consensus size: 77
8920384 TAAATGGAAG
* * * * *
8920394 GAATAAAATCCTGAAGCATAATTATTCAATTGATTTCTATTTGAAACAAAAAATTGAACAAATCC
1 GAATAAAATCATGAAACAGAATTACTCAATTGATTTCTATTTGAAACAAAAAATCGAACAAATCC
*
8920459 TGTTAAACGACA
66 TATTAAACGACA
* * * * *
8920471 GAAATAAAATCTTAAAACAGAATTACTCAGTTGATTTTTGTTTGAAACAAAAAATCGAACAAATC
1 G-AATAAAATCATGAAACAGAATTACTCAATTGATTTCTATTTGAAACAAAAAATCGAACAAATC
*
8920536 CTATTAAATGACAA
65 CTATTAAACGAC-A
*
8920550 GAATAAAATCATGAAATAGAATT
1 GAATAAAATCATGAAACAGAATT
8920573 GTTTAGTTTT
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
77 1 0.01
78 83 0.97
79 2 0.02
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.29
Consensus pattern (77 bp):
GAATAAAATCATGAAACAGAATTACTCAATTGATTTCTATTTGAAACAAAAAATCGAACAAATCC
TATTAAACGACA
Found at i:8928714 original size:10 final size:10
Alignment explanation
Indices: 8928695--8928727 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
8928685 TGGGCCAAGT
8928695 GGGC-CACAC
1 GGGCACACAC
8928704 GGGCACACAC
1 GGGCACACAC
8928714 GGGCACACAC
1 GGGCACACAC
8928724 GGGC
1 GGGC
8928728 GAGTGAGCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.17
10 19 0.83
ACGTcount: A:0.24, C:0.39, G:0.36, T:0.00
Consensus pattern (10 bp):
GGGCACACAC
Found at i:8934329 original size:27 final size:27
Alignment explanation
Indices: 8934299--8934353 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
8934289 GCTAACCCCA
8934299 GTGTGCGAACCTATGTGTGAAACCCTT
1 GTGTGCGAACCTATGTGTGAAACCCTT
* * * *
8934326 GTGTGCGAGCTTGTGTGTGAACCCCTT
1 GTGTGCGAACCTATGTGTGAAACCCTT
8934353 G
1 G
8934354 CTTGTGAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.16, C:0.22, G:0.31, T:0.31
Consensus pattern (27 bp):
GTGTGCGAACCTATGTGTGAAACCCTT
Found at i:8938164 original size:17 final size:17
Alignment explanation
Indices: 8938142--8938174 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8938132 TAGAACTGGG
8938142 TTGAGAAAATTATTTAA
1 TTGAGAAAATTATTTAA
*
8938159 TTGAGAAATTTATTTA
1 TTGAGAAAATTATTTA
8938175 TTTAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (17 bp):
TTGAGAAAATTATTTAA
Found at i:8940979 original size:111 final size:110
Alignment explanation
Indices: 8940785--8941002 Score: 382
Period size: 111 Copynumber: 2.0 Consensus size: 110
8940775 TCTCTATCCG
* *
8940785 TGTGGACGAAAATAGTCCATTTTATAAGCCATTTTTTCACCCAGTTTGGCATGCACCTACAACCA
1 TGTGGACGAAAATAGGCCATTTTATAAGCCATTTTTTCACCCAATTTGGCATGCACCTACAACCA
*
8940850 AAATTTCACATATTTACAAGCTATAATAAGGCACCAAAATCCCCA
66 AAATTTCACATATATACAAGCTATAATAAGGCACCAAAATCCCCA
*
8940895 TGTGGATGAAAATAGGCCATTTTATAAGCCATTTTTCTCACCCAATTTGGCATGCACCTACAACC
1 TGTGGACGAAAATAGGCCATTTTATAAGCCATTTTT-TCACCCAATTTGGCATGCACCTACAACC
*
8940960 AAAATTTCACATATATACAAGCTATCATAAGGCACCAAAATCC
65 AAAATTTCACATATATACAAGCTATAATAAGGCACCAAAATCC
8941003 TGCATATTCT
Statistics
Matches: 102, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
110 34 0.33
111 68 0.67
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (110 bp):
TGTGGACGAAAATAGGCCATTTTATAAGCCATTTTTTCACCCAATTTGGCATGCACCTACAACCA
AAATTTCACATATATACAAGCTATAATAAGGCACCAAAATCCCCA
Found at i:8943591 original size:23 final size:23
Alignment explanation
Indices: 8943561--8943615 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
8943551 CCCTGCTAGG
8943561 CACAAAGCCCAAATAATTACCGA
1 CACAAAGCCCAAATAATTACCGA
*
8943584 CACAAAGCCCAAATAATTACCGG
1 CACAAAGCCCAAATAATTACCGA
*
8943607 CAAAAAGCC
1 CACAAAGCC
8943616 TGCTAGGCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.47, C:0.31, G:0.11, T:0.11
Consensus pattern (23 bp):
CACAAAGCCCAAATAATTACCGA
Found at i:8943653 original size:39 final size:39
Alignment explanation
Indices: 8943584--8943761 Score: 232
Period size: 39 Copynumber: 4.6 Consensus size: 39
8943574 TAATTACCGA
* * * * *
8943584 CACAAAGCCCAAATAATTACCGGCAAAAAGCCTGCTAGG
1 CACATAGCCCGAATAATCACCGACACAAAGCCTGCTAGG
8943623 CACATAGCCCGAATAATCACCGACACAAAGCCTGCTAGG
1 CACATAGCCCGAATAATCACCGACACAAAGCCTGCTAGG
* * *
8943662 CACTTAGCCTGAATAATCACC-AGCACAAAGCCTGCTAGA
1 CACATAGCCCGAATAATCACCGA-CACAAAGCCTGCTAGG
* * **
8943701 CACTTAGCCCGAATAATCATCGGTACAAAGCCTGCTAGG
1 CACATAGCCCGAATAATCACCGACACAAAGCCTGCTAGG
8943740 CACATAGCCCGAATAATCACCG
1 CACATAGCCCGAATAATCACCG
8943762 TATTTCTACT
Statistics
Matches: 122, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
38 1 0.01
39 121 0.99
ACGTcount: A:0.36, C:0.31, G:0.17, T:0.16
Consensus pattern (39 bp):
CACATAGCCCGAATAATCACCGACACAAAGCCTGCTAGG
Found at i:8944122 original size:17 final size:18
Alignment explanation
Indices: 8944092--8944133 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
8944082 TCGAAATTCA
*
8944092 TCAAATTAACTAATTT-TC
1 TCAAA-TAAATAATTTATC
8944110 TCAAATAAATAATTTATC
1 TCAAATAAATAATTTATC
8944128 -CAAATA
1 TCAAATA
8944134 TTATAAGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (18 bp):
TCAAATAAATAATTTATC
Found at i:8951267 original size:21 final size:22
Alignment explanation
Indices: 8951243--8951300 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 22
8951233 TTAGGGTCAT
8951243 AAATAATTAATTAAAGTAT-TA
1 AAATAATTAATTAAAGTATATA
*
8951264 AAATAATATAA-T-AATTATATA
1 AAATAAT-TAATTAAAGTATATA
8951285 AAATTATATTAATTAA
1 AAA-TA-ATTAATTAA
8951301 TCTAAAACGA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
20 5 0.17
21 13 0.43
22 8 0.27
23 3 0.10
24 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
AAATAATTAATTAAAGTATATA
Found at i:8962465 original size:20 final size:20
Alignment explanation
Indices: 8962432--8962479 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
8962422 TAGAGCACTA
* * *
8962432 AAGTGAAAATAGAGGCATCG
1 AAGTGCAAACAGAGGCACCG
*
8962452 AAGTGCAAACAGAGTCACCG
1 AAGTGCAAACAGAGGCACCG
8962472 AAGTGCAA
1 AAGTGCAA
8962480 CCCCATACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.44, C:0.17, G:0.27, T:0.12
Consensus pattern (20 bp):
AAGTGCAAACAGAGGCACCG
Found at i:8969968 original size:84 final size:84
Alignment explanation
Indices: 8969852--8970207 Score: 489
Period size: 84 Copynumber: 4.2 Consensus size: 84
8969842 GGCCGTGTGT
* * * * *
8969852 CCAAA-ACACATGCCCATGTAGGATCCCCAAATCACCAAGTTGGCCACATGGTCGTGTGGCATCA
1 CCAAACACACACGCCCGTGTGGGATCCCTAAATCACCAAGTTGGCCACACGGTCGTGTGGCATCA
*
8969916 AATCACATAACCCTAACTC
66 AATCACATAACCCTAATTC
* *
8969935 CCAAACACACACGCCCGTGTGGGATCCTTAAATCTCCAAGTTGGCCACACGGTCGTGTGGCATCA
1 CCAAACACACACGCCCGTGTGGGATCCCTAAATCACCAAGTTGGCCACACGGTCGTGTGGCATCA
*
8970000 AATCATATAACCCTAATTC
66 AATCACATAACCCTAATTC
* ** * * ** *
8970019 CCTAACACACATACCCCTGTGGGATCCCTAAATCACCAAGTTGGCCAAACGACCGTGTGGAATCA
1 CCAAACACACACGCCCGTGTGGGATCCCTAAATCACCAAGTTGGCCACACGGTCGTGTGGCATCA
8970084 AATCACATAACCCTAATTC
66 AATCACATAACCCTAATTC
* * * * * * *
8970103 CCGAACACACACACTCGTATAGGATCCCTAAATCCCCAAGTTGGCCACACGGTTGTGTGGCATCA
1 CCAAACACACACGCCCGTGTGGGATCCCTAAATCACCAAGTTGGCCACACGGTCGTGTGGCATCA
8970168 AATCACATAACCCTAATTC
66 AATCACATAACCCTAATTC
8970187 CCAAACACACACGCCCGTGTG
1 CCAAACACACACGCCCGTGTG
8970208 AGAAAGGGAC
Statistics
Matches: 235, Mismatches: 37, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
83 5 0.02
84 230 0.98
ACGTcount: A:0.31, C:0.33, G:0.16, T:0.20
Consensus pattern (84 bp):
CCAAACACACACGCCCGTGTGGGATCCCTAAATCACCAAGTTGGCCACACGGTCGTGTGGCATCA
AATCACATAACCCTAATTC
Found at i:8970899 original size:6 final size:6
Alignment explanation
Indices: 8970888--8970929 Score: 50
Period size: 6 Copynumber: 6.7 Consensus size: 6
8970878 TTTTCATATC
8970888 AAAAAT AAAAAT AAAAAT AAGAAA- AAATGAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AA-AAAT AAA--AAT AAAAAT AAAA
8970930 TCTAACCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
5 1 0.03
6 23 0.72
7 5 0.16
8 3 0.09
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:8974371 original size:17 final size:18
Alignment explanation
Indices: 8974327--8974372 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
8974317 AATAAATAAT
8974327 ATTAACTTTATTAAACATA
1 ATTAA-TTTATTAAACATA
**
8974346 ATTAA-TTATTAATTATA
1 ATTAATTTATTAAACATA
8974363 A-TAATTTATT
1 ATTAATTTATT
8974373 TTTCTTTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 3 0.12
17 16 0.67
19 5 0.21
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTAATTTATTAAACATA
Found at i:8983444 original size:17 final size:17
Alignment explanation
Indices: 8983422--8983460 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
8983412 TATTCTATTA
8983422 ATTTAATA-ATATTTAAT
1 ATTTAATATA-ATTTAAT
*
8983439 ATTTAATTTAATTTAAT
1 ATTTAATATAATTTAAT
8983456 ATTTA
1 ATTTA
8983461 TCTTGAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTAATATAATTTAAT
Found at i:8983452 original size:62 final size:59
Alignment explanation
Indices: 8983372--8983488 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
8983362 AGTGATTATC
* *
8983372 TTAATATTAAATTAAATTTAATGTTTATATTGTAGATAAATATTCTATTAATTTAATAATAT
1 TTAATATTAAATTAAATTTAATATTTATATTG-A-A-AAATATTATATTAATTTAATAATAT
* * *
8983434 TTAATATTTAATTTAATTTAATATTTATCTTGAAAAATATTATATTAATTTAATA
1 TTAATATTAAATTAAATTTAATATTTATATTGAAAAATATTATATTAATTTAATA
8983489 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 20 0.40
60 1 0.02
61 1 0.02
62 28 0.56
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (59 bp):
TTAATATTAAATTAAATTTAATATTTATATTGAAAAATATTATATTAATTTAATAATAT
Found at i:8983890 original size:34 final size:34
Alignment explanation
Indices: 8983780--8983893 Score: 129
Period size: 34 Copynumber: 3.4 Consensus size: 34
8983770 TCGAATAATG
** * * * *
8983780 ATAAGCATGTCTTTTGCTACTATATTGATTTGTT
1 ATAAGCATGTCAATTACTACCATATTGATCTATT
* * * *
8983814 ATAAGCATATCTATTCCTACCGTATTGATCTATT
1 ATAAGCATGTCAATTACTACCATATTGATCTATT
*
8983848 ATAAGCATGTCAATTACTACCATTTTGATCTATT
1 ATAAGCATGTCAATTACTACCATATTGATCTATT
8983882 ATAAGCATGTCA
1 ATAAGCATGTCA
8983894 TAATGCATTG
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 68 1.00
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (34 bp):
ATAAGCATGTCAATTACTACCATATTGATCTATT
Found at i:8988421 original size:45 final size:45
Alignment explanation
Indices: 8988365--8988498 Score: 128
Period size: 45 Copynumber: 3.0 Consensus size: 45
8988355 CTGTTTGTCT
* * * *
8988365 ACAACGTACTAGTAGCTTTTAT-TTTCACTGATGAGTGATTTATCC
1 ACAACATACTAGCAGCTTTTATATGT-ACTAATGAGTGATTTATCC
** * *
8988410 ACAATTTACTAGCAGATTTTATATGTACTAATGAGTGGTTTATCC
1 ACAACATACTAGCAGCTTTTATATGTACTAATGAGTGATTTATCC
* * * *
8988455 ACAACATACTAGCAACTTTTATCA-GCACCAATGAGTGGTTTATC
1 ACAACATACTAGCAGCTTTTAT-ATGTACTAATGAGTGATTTATC
8988499 AAAATCGTAC
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
45 71 0.96
46 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (45 bp):
ACAACATACTAGCAGCTTTTATATGTACTAATGAGTGATTTATCC
Found at i:8989074 original size:67 final size:67
Alignment explanation
Indices: 8988903--8989147 Score: 341
Period size: 66 Copynumber: 3.7 Consensus size: 67
8988893 AACATAAAGC
* *
8988903 GTCCTCCAAGACATTAAACATGGGGTATGATGTGTAAGACTATAGCTCGGTTATGGTAATATACA
1 GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACA
8988968 GA
66 GA
*
8988970 GT-CCCCAAGACATTGAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACA
1 GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACA
8989034 GA
66 GA
* * * * *
8989036 GTCCCCCAAGACATTGAACATGGGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATAGA
1 GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACA
8989101 GA
66 GA
* * * * * * *
8989103 GTTCACTAGGACATTAAACAT-GTGTATGATTTATAAGACCATAGC
1 GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGC
8989148 ACGACTATGA
Statistics
Matches: 162, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
66 84 0.52
67 78 0.48
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (67 bp):
GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACA
GA
Found at i:8989104 original size:133 final size:133
Alignment explanation
Indices: 8988903--8989147 Score: 348
Period size: 133 Copynumber: 1.8 Consensus size: 133
8988893 AACATAAAGC
* * * * *
8988903 GTCCTCCAAGACATTAAACATGGGGTATGATGTGTAAGACTATAGCTCGGTTATGGTAATATACA
1 GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATACA
* * *
8988968 GAG-TCCCCAAGACATTGAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATA
66 GAGTTCACCAAGACATTAAACAT-GGGTATGATGTATAAGACCATAGCTCGGTTATGGTAATATA
8989032 CAGA
130 CAGA
* *
8989036 GTCCCCCAAGACATTGAACATGGGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATAGA
1 GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATACA
* * * *
8989101 GAGTTCACTAGGACATTAAACATGTGTATGATTTATAAGACCATAGC
66 GAGTTCACCAAGACATTAAACATGGGTATGATGTATAAGACCATAGC
8989148 ACGACTATGA
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
133 82 0.85
134 15 0.15
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (133 bp):
GTCCCCCAAGACATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATACA
GAGTTCACCAAGACATTAAACATGGGTATGATGTATAAGACCATAGCTCGGTTATGGTAATATAC
AGA
Found at i:8989164 original size:66 final size:67
Alignment explanation
Indices: 8988858--8989290 Score: 223
Period size: 67 Copynumber: 6.5 Consensus size: 67
8988848 GGGCTATAAT
* * * *** * * * *
8988858 GGGTATGATGTGTAAAATCATAGCTTAACTATAGCAACATAAAGCGTCCT-CCAAGACATTAAAC
1 GGGTATGATGTATAAGACCATAGCACGACTATGGCAACATAAAGAG-CCTACTAGGACATTAAAC
8988922 ATG
65 ATG
* * * ** * * * * * *
8988925 GGGTATGATGTGTAAGACTATAGCTCGGTTATGGTAATATACAGAGTCC--CCAAGACATTGAAC
1 GGGTATGATGTATAAGACCATAGCACGACTATGGCAACATAAAGAG-CCTACTAGGACATTAAAC
8988988 ATG
65 ATG
* * ** * * * * * * *
8988991 GGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACAGAGTCC-CCCAAGACATTGAAC
1 GGGTATGATGTATAAGACCATAGCACGACTATGGCAACATAAAGAG-CCTACTAGGACATTAAAC
8989055 ATG
65 ATG
* * * * *
8989058 GGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATAGAGAG-TTCACTAGGACATTAAAC
1 GGGTATGATGTATAAGACCATAGCACGACTATGGCAACATAAAGAGCCT-ACTAGGACATTAAAC
8989122 AT-
65 ATG
* * * * *
8989124 GTGTATGATTTATAAGACCATAGCACGACTATGATC-ACATAAAGAGCCTACTAGGATATTAAAA
1 GGGTATGATGTATAAGACCATAGCACGACTATG-GCAACATAAAGAGCCTACTAGGACATTAAAC
*
8989188 ATA
65 ATG
* * * * ** * * * * ** *
8989191 GGGCATGATGTGTAAAAACATAGCTTGGCTATGGCCACATAGAGAGACTGTTAGGATATTAAACA
1 GGGTATGATGTATAAGACCATAGCACGACTATGGCAACATAAAGAGCCTACTAGGACATTAAACA
8989256 TG
66 TG
* * * * *
8989258 GGGAATTATGTGTAAGACCATAGCTCAACTATG
1 GGGTATGATGTATAAGACCATAGCACGACTATG
8989291 ACAGATCATA
Statistics
Matches: 303, Mismatches: 56, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
66 117 0.39
67 186 0.61
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (67 bp):
GGGTATGATGTATAAGACCATAGCACGACTATGGCAACATAAAGAGCCTACTAGGACATTAAACA
TG
Found at i:8989290 original size:67 final size:66
Alignment explanation
Indices: 8988915--8989290 Score: 270
Period size: 67 Copynumber: 5.7 Consensus size: 66
8988905 CCTCCAAGAC
* ** ** * * * * *
8988915 ATTAAACATGGGGTATGATGTGTAAGACTATAGCTCGGTTATGGTAATATACAGAG-TCCCCAAG
1 ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCCACATAGAGAGCT-ACTAGG
*
8988979 AC
65 AT
* ** ** * * ** * *
8988981 ATTGAACATGGGGTATGATGTGTAAGACCATAGCTCGGTTATGGTAATATACAGAGTCCCCCAAG
1 ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCCACATAGAGAG-CTACTAGG
*
8989046 AC
65 AT
* * * *
8989048 ATTGAACATGGGGTATGATGTGTAAGACCATAGCTCGATTATGGCAACATAGAGAGTTCACTAGG
1 ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCCACATAGAGAGCT-ACTAGG
*
8989113 AC
65 AT
* * * * ** *
8989115 ATTAAACAT-GTGTATGATTTATAAGACCATAGCACGACTATGATCACATAAAGAGCCTACTAGG
1 ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCCACATAGAGAG-CTACTAGG
8989179 AT
65 AT
* * * * * * * **
8989181 ATTAAAAATAGGGCATGATGTGTAAAAACATAGCTTGGCTATGGCCACATAGAGAGACTGTTAGG
1 ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCCACATAGAGAG-CTACTAGG
8989246 AT
65 AT
* * *
8989248 ATTAAACATGGGGAATTATGTGTAAGACCATAGCTCAACTATG
1 ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATG
8989291 ACAGATCATA
Statistics
Matches: 256, Mismatches: 49, Indels: 9
0.82 0.16 0.03
Matches are distributed among these distances:
66 106 0.41
67 150 0.59
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.26
Consensus pattern (66 bp):
ATTAAACATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCCACATAGAGAGCTACTAGGA
T
Found at i:8994005 original size:67 final size:67
Alignment explanation
Indices: 8993897--8994200 Score: 393
Period size: 67 Copynumber: 4.6 Consensus size: 67
8993887 AGGTTGTAAT
*
8993897 AGGTATAATGTGTAAGACCATAGCTCGACTAT-AGCAACATAGAAAGTCTGTCAGGACATTAAAC
1 AGGTATGATGTGTAAGACCATAGCTCGACTATGA-CAACATAGAAAGTCTGTCAGGACATTAAAC
8993961 ATG
65 ATG
* * * * **
8993964 AGGTATGATATGTAAGACCATAACTCAACTATGGCAACATAGGGAGTCTGTCAGGACATTAAACA
1 AGGTATGATGTGTAAGACCATAGCTCGACTATGACAACATAGAAAGTCTGTCAGGACATTAAACA
8994029 TG
66 TG
* *
8994031 GGGTATGATGTGTAAGACCATAGCTCGATTATGACAACATAGAGAA-TCTG-CTAGGACATTAAA
1 AGGTATGATGTGTAAGACCATAGCTCGACTATGACAACATAGA-AAGTCTGTC-AGGACATTAAA
8994094 CATG
64 CATG
* * * * * *
8994098 -GTGTATGATGTGTAAGACCATAGCTCG-GTATGACCACATAGAGAGTCTGTGAGAATATTAAAC
1 AG-GTATGATGTGTAAGACCATAGCTCGACTATGACAACATAGAAAGTCTGTCAGGACATTAAAC
8994161 ATG
65 ATG
*
8994164 GGGTATGATGTGTAAGACCATAGCTCGACTATGACAA
1 AGGTATGATGTGTAAGACCATAGCTCGACTATGACAA
8994201 ATACAGAGTT
Statistics
Matches: 206, Mismatches: 23, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
65 1 0.00
66 57 0.28
67 147 0.71
68 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (67 bp):
AGGTATGATGTGTAAGACCATAGCTCGACTATGACAACATAGAAAGTCTGTCAGGACATTAAACA
TG
Found at i:9011529 original size:6 final size:6
Alignment explanation
Indices: 9011512--9011555 Score: 70
Period size: 6 Copynumber: 7.2 Consensus size: 6
9011502 ACCCTTCTTC
*
9011512 TCCCCTT TCCCCT TCCCCT TCCCCT TCCCTT TCCCCT TCCCCT T
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT T
9011556 GGGTTGAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 30 0.86
7 5 0.14
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (6 bp):
TCCCCT
Found at i:9011643 original size:25 final size:25
Alignment explanation
Indices: 9011615--9011664 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
9011605 CAGGTAAGGC
*
9011615 TCCTTCTCCTTCTTCCATTCTTCAT
1 TCCTTCTCCTTCTTCCATTCATCAT
* * *
9011640 TCCTTTTTCTTCTTCCGTTCATCAT
1 TCCTTCTCCTTCTTCCATTCATCAT
9011665 CTTCTCTTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.08, C:0.36, G:0.02, T:0.54
Consensus pattern (25 bp):
TCCTTCTCCTTCTTCCATTCATCAT
Found at i:9015393 original size:22 final size:20
Alignment explanation
Indices: 9015350--9015388 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
9015340 AAAATTTAAA
9015350 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
*
9015370 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
9015389 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:9015450 original size:32 final size:34
Alignment explanation
Indices: 9015409--9015486 Score: 92
Period size: 33 Copynumber: 2.4 Consensus size: 34
9015399 AACTTTTTCG
*
9015409 GAAAATATTTTCA-AGAAA-TCTAT-CAAACAACA
1 GAAAATATTTTCATACAAATTC-ATCCAAACAACA
* *
9015441 GAAAATATTTT-ATACAGATTCATCCAAACACCA
1 GAAAATATTTTCATACAAATTCATCCAAACAACA
9015474 GAAAATATTTTCA
1 GAAAATATTTTCA
9015487 GTAAATCATT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
31 1 0.03
32 16 0.41
33 21 0.54
34 1 0.03
ACGTcount: A:0.49, C:0.17, G:0.06, T:0.28
Consensus pattern (34 bp):
GAAAATATTTTCATACAAATTCATCCAAACAACA
Found at i:9015526 original size:20 final size:20
Alignment explanation
Indices: 9015486--9015525 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
9015476 AAATATTTTC
9015486 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
9015506 AGTAAATCATTTTCC-GAAA
1 AGTAAATCATTTTCCAGAAA
9015525 A
1 A
9015526 ATATTTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
AGTAAATCATTTTCCAGAAA
Found at i:9015957 original size:21 final size:21
Alignment explanation
Indices: 9015933--9015974 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
9015923 ATCTCACTAT
*
9015933 TACAGTATCCAATCTCACCGC
1 TACAGTAACCAATCTCACCGC
*
9015954 TACAGTAACTAATCTCACCGC
1 TACAGTAACCAATCTCACCGC
9015975 CACCGTTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.36, G:0.10, T:0.24
Consensus pattern (21 bp):
TACAGTAACCAATCTCACCGC
Found at i:9030279 original size:20 final size:20
Alignment explanation
Indices: 9030254--9030319 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
9030244 TTTTTTTTAG
9030254 ATTATTTTTAATATGTTATT
1 ATTATTTTTAATATGTTATT
* *
9030274 ATTATTATTT-TTAT-CTATT
1 ATTATT-TTTAATATGTTATT
* * *
9030293 TTTAATTATTACTATGTTATT
1 ATT-ATTTTTAATATGTTATT
9030314 ATTATT
1 ATTATT
9030320 GTATTTGTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.23
20 18 0.51
21 9 0.26
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (20 bp):
ATTATTTTTAATATGTTATT
Found at i:9030812 original size:14 final size:14
Alignment explanation
Indices: 9030784--9030824 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
9030774 NNNNNNNNNN
9030784 TTTAC-TTTTTTTA
1 TTTACATTTTTTTA
*
9030797 TTTACATTTATTTA
1 TTTACATTTTTTTA
*
9030811 TTTCCATTTTTTTA
1 TTTACATTTTTTTA
9030825 GATACCTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 5 0.21
14 19 0.79
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTACATTTTTTTA
Found at i:9038073 original size:21 final size:21
Alignment explanation
Indices: 9038049--9038103 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
9038039 CTTTACTTTA
*
9038049 TGTTTAGCTCTTTCGAGCTTC
1 TGTTTAGCTCTTACGAGCTTC
9038070 TGTTTAGCTCTTACGAGCTTC
1 TGTTTAGCTCTTACGAGCTTC
*
9038091 TGTTTAACTCTTA
1 TGTTTAGCTCTTA
9038104 TCAGTTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.15, C:0.22, G:0.16, T:0.47
Consensus pattern (21 bp):
TGTTTAGCTCTTACGAGCTTC
Done.