Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 42 of 150
Found at i:11716257 original size:20 final size:21
Alignment explanation
Indices: 11716223--11716262 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
11716213 TATGTTCAAA
11716223 TATGATATTTTACAT-ACATG
1 TATGATATTTTACATGACATG
11716243 TATGAT-TTTTAACATGACAT
1 TATGATATTTT-ACATGACAT
11716263 ATTGCATGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (21 bp):
TATGATATTTTACATGACATG
Found at i:11716336 original size:26 final size:26
Alignment explanation
Indices: 11716298--11716378 Score: 74
Period size: 26 Copynumber: 3.1 Consensus size: 26
11716288 TGGAGGAAGT
* * *
11716298 ATACTATTTCTGGCAGCTTTGCTGCT
1 ATACTACTACTGGCAGCTTTGCTGCG
* * *
11716324 ATACTGA-TACTGGTAGCTCTGCTGGG
1 ATACT-ACTACTGGCAGCTTTGCTGCG
* *
11716350 ATGCTACTACTGACAGCTTTGCTGCG
1 ATACTACTACTGGCAGCTTTGCTGCG
11716376 ATA
1 ATA
11716379 TTGGTGTGTT
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
25 1 0.02
26 40 0.95
27 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (26 bp):
ATACTACTACTGGCAGCTTTGCTGCG
Found at i:11716580 original size:33 final size:28
Alignment explanation
Indices: 11716489--11716567 Score: 149
Period size: 28 Copynumber: 2.8 Consensus size: 28
11716479 ATATTGATAT
11716489 TGTATTGGGCTAAGGCCCACACTGTTAC
1 TGTATTGGGCTAAGGCCCACACTGTTAC
*
11716517 TGTATTCGGCTAAGGCCCACACTGTTAC
1 TGTATTGGGCTAAGGCCCACACTGTTAC
11716545 TGTATTGGGCTAAGGCCCACACT
1 TGTATTGGGCTAAGGCCCACACT
11716568 ATACTATTAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.28
Consensus pattern (28 bp):
TGTATTGGGCTAAGGCCCACACTGTTAC
Found at i:11716766 original size:13 final size:13
Alignment explanation
Indices: 11716748--11716772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11716738 ACAATTACTG
11716748 CTATTTACATTTT
1 CTATTTACATTTT
11716761 CTATTTACATTT
1 CTATTTACATTT
11716773 ACTTTTAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.60
Consensus pattern (13 bp):
CTATTTACATTTT
Found at i:11717475 original size:25 final size:25
Alignment explanation
Indices: 11717446--11717534 Score: 72
Period size: 25 Copynumber: 3.3 Consensus size: 25
11717436 TCGATATTCA
11717446 ATTCAATTCCACACCTATATTTCTT
1 ATTCAATTCCACACCTATATTTCTT
* * * *
11717471 ATTCAATTACACTTAATCAAGTCGATATTC-A
1 ATTCAATTCCAC---ACCTA-T--AT-TTCTT
11717502 ATTCAATTCCACACCTATATTTCTT
1 ATTCAATTCCACACCTATATTTCTT
11717527 ATTCAATT
1 ATTCAATT
11717535 ACACTTAGTC
Statistics
Matches: 48, Mismatches: 8, Indels: 16
0.67 0.11 0.22
Matches are distributed among these distances:
24 3 0.06
25 21 0.44
27 1 0.02
28 6 0.12
29 1 0.02
31 13 0.27
32 3 0.06
ACGTcount: A:0.33, C:0.24, G:0.02, T:0.42
Consensus pattern (25 bp):
ATTCAATTCCACACCTATATTTCTT
Found at i:11717494 original size:56 final size:56
Alignment explanation
Indices: 11717433--11717546 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
11717423 TTCCATTTCT
11717433 AAGTCGATATTCAATTCAATTCCACACCTATATTTCTTATTCAATTACACTTAATC
1 AAGTCGATATTCAATTCAATTCCACACCTATATTTCTTATTCAATTACACTTAATC
*
11717489 AAGTCGATATTCAATTCAATTCCACACCTATATTTCTTATTCAATTACACTTAGTC
1 AAGTCGATATTCAATTCAATTCCACACCTATATTTCTTATTCAATTACACTTAATC
11717545 AA
1 AA
11717547 TTTCCCGATG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.39
Consensus pattern (56 bp):
AAGTCGATATTCAATTCAATTCCACACCTATATTTCTTATTCAATTACACTTAATC
Found at i:11717740 original size:51 final size:51
Alignment explanation
Indices: 11717678--11717810 Score: 160
Period size: 51 Copynumber: 2.6 Consensus size: 51
11717668 ATGTTCGGTT
* * * *
11717678 CACATAGTAGCCTGCACATAGTACTACACATGTGA-CTATTACCATTCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGATCGA-AACCATCCGATA
** * * *
11717729 CATGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACCATCCGATA
*
11717780 CGCATAGTAGCCTGCACATAGTACTACACAC
1 CACATAGTAGCCTGCACATAGTACTACACAC
11717811 ATGACCATCA
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
51 66 0.97
52 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACCATCCGATA
Found at i:11737657 original size:41 final size:41
Alignment explanation
Indices: 11737606--11737701 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
11737596 TTTTACCCCG
* * *
11737606 AACCTAAAACCCTAAATATAGAATTCTAAATCCCGAACCCA
1 AACCTTAAACCCTAAATATAGAATTCTAAACCCCAAACCCA
*
11737647 AACTTTAAACCCTAAATATAGAATTCTAAACCCCAAACCCA
1 AACCTTAAACCCTAAATATAGAATTCTAAACCCCAAACCCA
*
11737688 AACCTTAAATCCTA
1 AACCTTAAACCCTA
11737702 GGTTTCAAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.46, C:0.29, G:0.03, T:0.22
Consensus pattern (41 bp):
AACCTTAAACCCTAAATATAGAATTCTAAACCCCAAACCCA
Found at i:11737788 original size:40 final size:39
Alignment explanation
Indices: 11737724--11737800 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 39
11737714 GGAGTTTAGA
*
11737724 GTTTGGGTTTGGATTCGAGTTTAAGGTTTATGGTTTATG
1 GTTTGGGTTTGGATTCGAGTTTAAGGTTTAAGGTTTATG
*
11737763 GTTTGAGGTTTGAGATTTGAG-TTAAGGTTTAAGGTTTA
1 GTTTG-GGTTTG-GATTCGAGTTTAAGGTTTAAGGTTTA
11737801 AGATTATGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
39 5 0.15
40 22 0.65
41 7 0.21
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.47
Consensus pattern (39 bp):
GTTTGGGTTTGGATTCGAGTTTAAGGTTTAAGGTTTATG
Found at i:11737794 original size:7 final size:7
Alignment explanation
Indices: 11737742--11737802 Score: 54
Period size: 7 Copynumber: 9.0 Consensus size: 7
11737732 TTGGATTCGA
11737742 GTTTAAG
1 GTTTAAG
*
11737749 GTTTATG
1 GTTTAAG
*
11737756 GTTTATG
1 GTTTAAG
*
11737763 GTTTGAG
1 GTTTAAG
*
11737770 GTTTGAG
1 GTTTAAG
* *
11737777 ATTTGA-
1 GTTTAAG
11737783 G-TTAAG
1 GTTTAAG
11737789 GTTTAAG
1 GTTTAAG
11737796 GTTTAAG
1 GTTTAAG
11737803 ATTATGGGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
5 3 0.07
6 1 0.02
7 42 0.91
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (7 bp):
GTTTAAG
Found at i:11738165 original size:2 final size:2
Alignment explanation
Indices: 11738158--11738192 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
11738148 TAAAACAATA
11738158 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11738193 CTTGTATCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:11740948 original size:14 final size:14
Alignment explanation
Indices: 11740929--11740959 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
11740919 GACATTTTTT
*
11740929 TAATGATATTATTC
1 TAATGATACTATTC
11740943 TAATGATACTATTC
1 TAATGATACTATTC
11740957 TAA
1 TAA
11740960 CATGTAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (14 bp):
TAATGATACTATTC
Found at i:11741628 original size:18 final size:18
Alignment explanation
Indices: 11741602--11741642 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
11741592 ATAGAGGCGA
*
11741602 AGCCAAAGCCCAAGCCTG
1 AGCCCAAGCCCAAGCCTG
**
11741620 AGCCCAAGCCTGAGCCTG
1 AGCCCAAGCCCAAGCCTG
11741638 AGCCC
1 AGCCC
11741643 GTCAGCCAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.41, G:0.24, T:0.07
Consensus pattern (18 bp):
AGCCCAAGCCCAAGCCTG
Found at i:11741641 original size:12 final size:12
Alignment explanation
Indices: 11741608--11741635 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
11741598 GCGAAGCCAA
11741608 AGCCCAAGCCTG
1 AGCCCAAGCCTG
11741620 AGCCCAAGCCTG
1 AGCCCAAGCCTG
11741632 AGCC
1 AGCC
11741636 TGAGCCCGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.43, G:0.25, T:0.07
Consensus pattern (12 bp):
AGCCCAAGCCTG
Found at i:11741814 original size:33 final size:33
Alignment explanation
Indices: 11741763--11741851 Score: 108
Period size: 33 Copynumber: 2.7 Consensus size: 33
11741753 TAGTACAGTA
* *
11741763 CCACCGCAGTACAACACTCCTCCT-AGCCTGTAT
1 CCACCGCAGTACAGCACTCCTCCTAAGCC-ATAT
* * *
11741796 CCACCGCATTACTGCACTCCTCCTAAGTCATAT
1 CCACCGCAGTACAGCACTCCTCCTAAGCCATAT
*
11741829 CCACCACAGTACAGCACTCCTCC
1 CCACCGCAGTACAGCACTCCTCC
11741852 CGGCTCAAGT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
33 44 0.94
34 3 0.06
ACGTcount: A:0.25, C:0.44, G:0.10, T:0.21
Consensus pattern (33 bp):
CCACCGCAGTACAGCACTCCTCCTAAGCCATAT
Found at i:11742192 original size:47 final size:47
Alignment explanation
Indices: 11742131--11742227 Score: 151
Period size: 47 Copynumber: 2.1 Consensus size: 47
11742121 TAATTGCAAC
11742131 ATTAAAACATTACAACATTAAAACATGGAACAAACTTTGTAAT-TAA
1 ATTAAAACATTACAACATTAAAACATGGAACAAACTTTGTAATATAA
* * *
11742177 ATTAAATACATTACAATATTAAAACTTGGAACTAACTTTGTAATATAA
1 ATTAAA-ACATTACAACATTAAAACATGGAACAAACTTTGTAATATAA
11742225 ATT
1 ATT
11742228 TTGTTATATA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 6 0.13
47 34 0.74
48 6 0.13
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.33
Consensus pattern (47 bp):
ATTAAAACATTACAACATTAAAACATGGAACAAACTTTGTAATATAA
Found at i:11742243 original size:62 final size:62
Alignment explanation
Indices: 11742166--11742306 Score: 239
Period size: 62 Copynumber: 2.3 Consensus size: 62
11742156 TGGAACAAAC
* * * *
11742166 TTTGTAAT-TAAATTAAATACATTACAATATTAAAACTTGGAACTAACTTTGTAATATAAAT
1 TTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAAT
11742227 TTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAAT
1 TTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAAT
11742289 TTTGTTATATAAATTAAA
1 TTTGTTATATAAATTAAA
11742307 AGCTCGAAAG
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
61 7 0.09
62 68 0.91
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.40
Consensus pattern (62 bp):
TTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAAT
Found at i:11745662 original size:211 final size:209
Alignment explanation
Indices: 11745308--11745718 Score: 630
Period size: 211 Copynumber: 1.9 Consensus size: 209
11745298 TGAGTTGGAT
11745308 GGGGGAGGGAATAACTTTAAAACAAAACATAAAAAAAACACAAAACAAACCATATAATACTAACA
1 GGGGGAGGGAATAACTTTAAAACAAAACATAAAAAAAACACAAAACAAACCATATAATACT----
*
11745373 AAATAAATTTTTCTTACAATAATATATTCTATTTGAAAATAACAATAAAAATAATAATACCTTTT
62 AAATAAATTTTTCTTACAATAATATATTCTATTTGAAAATAACAATAAAAATAATAATA-C--AT
* * * *
11745438 CTTTCTTTCTTCTCTTCTCTTCTCCCTCTCTTGTTCTGCTATTTTTT-TAACTGATACTTTAAAA
124 -ATTCTTTCTT-TCTTCTCTTCACCCTCTCTTGTTATGCTATTTTTTAAAACTGATACTTTAAAA
11745502 TTGAGCCGGATGGGGGAGCGGCC
187 TTGAGCCGGATGGGGGAGCGGCC
* *
11745525 GGGGG-GGGAATAACTTTAAAACAAAACATAAAAATAACACAAAACAAACTATATAATACT-AAT
1 GGGGGAGGGAATAACTTTAAAACAAAACATAAAAAAAACACAAAACAAACCATATAATACTAAAT
* *
11745588 AAATTTTTCTTATAATAATCTATTCTATTTGAAAATAACAATAAAAATAATAATACATATTCTTT
66 AAATTTTTCTTACAATAATATATTCTATTTGAAAATAACAATAAAAATAATAATACATATTCTTT
*
11745653 CTTTCTTCTCTTCACCCTCTCTTGTTATGCTATTTTTTAAAACTGATATTTTAAAATTGAGCCGG
131 CTTTCTTCTCTTCACCCTCTCTTGTTATGCTATTTTTTAAAACTGATACTTTAAAATTGAGCCGG
11745718 A
196 A
11745719 AAGGGGAGTG
Statistics
Matches: 183, Mismatches: 10, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
206 33 0.18
207 34 0.19
208 1 0.01
210 1 0.01
211 56 0.31
216 53 0.29
217 5 0.03
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (209 bp):
GGGGGAGGGAATAACTTTAAAACAAAACATAAAAAAAACACAAAACAAACCATATAATACTAAAT
AAATTTTTCTTACAATAATATATTCTATTTGAAAATAACAATAAAAATAATAATACATATTCTTT
CTTTCTTCTCTTCACCCTCTCTTGTTATGCTATTTTTTAAAACTGATACTTTAAAATTGAGCCGG
ATGGGGGAGCGGCC
Found at i:11758514 original size:60 final size:60
Alignment explanation
Indices: 11758406--11758529 Score: 178
Period size: 60 Copynumber: 2.1 Consensus size: 60
11758396 CTGGAATATT
* * *
11758406 TTCTTCCTCATTTGTTGAAGTTTTATCTTCATCTGAATTATAATTAGTGACTTTTAAGTC
1 TTCTTCCTCATCTGTTGAAGTTTTATCTTCATCAGAATTATAACTAGTGACTTTTAAGTC
* * *
11758466 TTCTTCCTGATCTGTTGAAGTTTTTTCTTCATCAG-ATTGATAACTAGTGACTTTTAAGTT
1 TTCTTCCTCATCTGTTGAAGTTTTATCTTCATCAGAATT-ATAACTAGTGACTTTTAAGTC
11758526 TTCT
1 TTCT
11758530 GTATTTTCAG
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
59 3 0.05
60 54 0.95
ACGTcount: A:0.22, C:0.15, G:0.13, T:0.50
Consensus pattern (60 bp):
TTCTTCCTCATCTGTTGAAGTTTTATCTTCATCAGAATTATAACTAGTGACTTTTAAGTC
Found at i:11758770 original size:9 final size:9
Alignment explanation
Indices: 11758734--11758789 Score: 60
Period size: 9 Copynumber: 6.0 Consensus size: 9
11758724 CTGGAAATCT
11758734 TTTTTTCATA
1 TTTTTT-ATA
11758744 TTTTTT-TA
1 TTTTTTATA
*
11758752 CGTTTTTTATG
1 --TTTTTTATA
11758763 TTTTTTATA
1 TTTTTTATA
*
11758772 ATTTTTATA
1 TTTTTTATA
11758781 TTTTTTATA
1 TTTTTTATA
11758790 CTAAAGGATT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
8 2 0.05
9 24 0.62
10 12 0.31
11 1 0.03
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.73
Consensus pattern (9 bp):
TTTTTTATA
Found at i:11760654 original size:17 final size:18
Alignment explanation
Indices: 11760632--11760673 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
11760622 TATATTTGTG
11760632 TATATATAATGTATG-AA
1 TATATATAATGTATGTAA
*
11760649 TATATAT-ATGTGTGTAA
1 TATATATAATGTATGTAA
11760666 TATATATA
1 TATATATA
11760674 TAAATTCTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 6 0.27
17 16 0.73
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (18 bp):
TATATATAATGTATGTAA
Found at i:11760674 original size:17 final size:17
Alignment explanation
Indices: 11760622--11760674 Score: 67
Period size: 15 Copynumber: 3.3 Consensus size: 17
11760612 GTTTGGATGT
*
11760622 TATATTTGTGT-ATATA
1 TATATGTGTGTAATATA
*
11760638 TA-ATGTATG-AATATA
1 TATATGTGTGTAATATA
11760653 TATATGTGTGTAATATA
1 TATATGTGTGTAATATA
11760670 TATAT
1 TATAT
11760675 AAATTCTTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 12 0.39
16 8 0.26
17 11 0.35
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (17 bp):
TATATGTGTGTAATATA
Found at i:11760784 original size:2 final size:2
Alignment explanation
Indices: 11760777--11760832 Score: 96
Period size: 2 Copynumber: 28.5 Consensus size: 2
11760767 TAATCAAAGG
11760777 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
11760818 TA TA TT TA TA TA TA T
1 TA TA TA TA TA TA TA T
11760833 GTGGATCGAA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 50 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11760993 original size:76 final size:76
Alignment explanation
Indices: 11760898--11761095 Score: 192
Period size: 76 Copynumber: 2.6 Consensus size: 76
11760888 GAAATTAGGG
* * *
11760898 ATGTATAT-ATTAGATTCGAATATGTATGAGTATACAAGTATAAGTTCATGTTTTGATTATAAG-
1 ATGTATATGA-TAGATTCGAATATGTATGAGTATACATGTATAAGTTCATGTATTGA-AATAAGA
11760961 TATGTA-ATTATAT
64 TATG-AGATTATAT
* * * * * *
11760974 ATGTATATGATAGACTCGAATATATAT-ATATATACATGTATAAATTCTTGTATTGAAATTAGAT
1 ATGTATATGATAGATTCGAATATGTATGA-GTATACATGTATAAGTTCATGTATTGAAATAAGAT
*
11761038 ATGAGTTTATAT
65 ATGAGATTATAT
* *
11761050 ATGTATATG-TGAGGTTCGAATGTGTATG-GTTATACATGTATAAGTT
1 ATGTATATGAT-AGATTCGAATATGTATGAG-TATACATGTATAAGTT
11761096 TTATATTGAA
Statistics
Matches: 99, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
75 7 0.07
76 91 0.92
77 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (76 bp):
ATGTATATGATAGATTCGAATATGTATGAGTATACATGTATAAGTTCATGTATTGAAATAAGATA
TGAGATTATAT
Found at i:11761536 original size:41 final size:41
Alignment explanation
Indices: 11761488--11761708 Score: 343
Period size: 41 Copynumber: 5.4 Consensus size: 41
11761478 CAGGCTTAGC
* * *
11761488 GCCTAGCAGGCTAAGTGTCGGTGATCTGAATTAGGCTATAA
1 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
* *
11761529 GCCTAGCAGGCTAAGTGCCGGTGAACTGAATTAGGTTATAA
1 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
* *
11761570 GCCTAGCAGGCTAAGTGCCGGTGATCGGAATCAGGCTATAA
1 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
*
11761611 GCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGTTATAA
1 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
* *
11761652 GCCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATCA
1 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
*
11761693 GCCTAGCAAGCTAAGT
1 GCCTAGCAGGCTAAGT
11761709 ACAGGTGAAT
Statistics
Matches: 166, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 166 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (41 bp):
GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
Found at i:11761940 original size:34 final size:37
Alignment explanation
Indices: 11761902--11761972 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 37
11761892 TATGTATGTA
11761902 TGCATTCGGCA-A-ATGTG-GATTATAAGTATATATG
1 TGCATTCGGCATATATGTGTGATTATAAGTATATATG
* *
11761936 TGCATTCGGCATATCTTTGTGATTATAAGTATATATG
1 TGCATTCGGCATATATGTGTGATTATAAGTATATATG
11761973 CTTTTGGCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
34 11 0.34
35 1 0.03
36 3 0.09
37 17 0.53
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (37 bp):
TGCATTCGGCATATATGTGTGATTATAAGTATATATG
Found at i:11769816 original size:82 final size:82
Alignment explanation
Indices: 11769595--11769823 Score: 323
Period size: 82 Copynumber: 2.8 Consensus size: 82
11769585 AGGCTTAGCA
**
11769595 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTACCGGTGAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGTCGGTGAA
* *
11769660 TTGAATCAGGTTATAAG
66 CTGAATCAGATTATAAG
* ** *
11769677 CCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGCTATAATTCTAGCAGGCTTAGTGTCGGTGAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGTCGGTGAA
*
11769742 CTGAATCATATTATAAG
66 CTGAATCAGATTATAAG
* * * * * *
11769759 CCTAGCAAGCTAAGTGTCGGTGATCTAAATCAAGTTATAAGCCTAGCAGGCTAAGTGTTGGTGAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGTCGGTGAA
11769824 TTTGTTTAAA
Statistics
Matches: 128, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
82 128 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (82 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGTCGGTGAA
CTGAATCAGATTATAAG
Found at i:11769822 original size:41 final size:41
Alignment explanation
Indices: 11769595--11769815 Score: 291
Period size: 41 Copynumber: 5.4 Consensus size: 41
11769585 AGGCTTAGCA
*
11769595 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAG
*
11769636 CCTAGCAGGCTAAGTACCGGTGAAT-TGAATCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTG-ATCTGAATCAGGTTATAAG
* * *
11769677 CCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGCTATAAT
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAG
* * * * **
11769718 TCTAGCAGGCTTAGTGTCGGTGAACTGAATCATATTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAG
* * * *
11769759 CCTAGCAAGCTAAGTGTCGGTGATCTAAATCAAGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAG
11769800 CCTAGCAGGCTAAGTG
1 CCTAGCAGGCTAAGTG
11769816 TTGGTGAATT
Statistics
Matches: 155, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
40 2 0.01
41 151 0.97
42 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAG
Found at i:11776351 original size:27 final size:27
Alignment explanation
Indices: 11776321--11776374 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
11776311 TTTATTTCTT
* * *
11776321 AGATTTTCTTAACGTTAGAATCAAATA
1 AGATTTTATTAACATAAGAATCAAATA
11776348 AGATTTTATTAACATAAGAATCAAATA
1 AGATTTTATTAACATAAGAATCAAATA
11776375 TTTACCAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.35
Consensus pattern (27 bp):
AGATTTTATTAACATAAGAATCAAATA
Found at i:11787698 original size:3 final size:3
Alignment explanation
Indices: 11787690--11787728 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
11787680 CCAATCATAA
11787690 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
11787729 TGTTGTAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:11798092 original size:21 final size:21
Alignment explanation
Indices: 11798068--11798111 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
11798058 TATTGATAAT
*
11798068 CAATACACAATCTCAAGATAC
1 CAATACACAATCGCAAGATAC
11798089 CAATACACAATCGCAAGATAC
1 CAATACACAATCGCAAGATAC
11798110 CA
1 CA
11798112 TCTTTCCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.48, C:0.30, G:0.07, T:0.16
Consensus pattern (21 bp):
CAATACACAATCGCAAGATAC
Found at i:11801221 original size:16 final size:16
Alignment explanation
Indices: 11801202--11801235 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
11801192 AGAAAGTGTG
*
11801202 AAAAGAAAGAAATTAA
1 AAAAAAAAGAAATTAA
11801218 AAAAAAAAGAAATTAA
1 AAAAAAAAGAAATTAA
11801234 AA
1 AA
11801236 CGTGAGGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.79, C:0.00, G:0.09, T:0.12
Consensus pattern (16 bp):
AAAAAAAAGAAATTAA
Found at i:11805311 original size:10 final size:10
Alignment explanation
Indices: 11805296--11805345 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
11805286 TTGCACTATG
11805296 TTCTTTCTTT
1 TTCTTTCTTT
11805306 TTCTTTCTTT
1 TTCTTTCTTT
*
11805316 TTCTTGT-TCT
1 TTCTT-TCTTT
11805326 TTC-TT-TTT
1 TTCTTTCTTT
11805334 TTCTTTACTTT
1 TTCTTT-CTTT
11805345 T
1 T
11805346 GATATTTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
8 6 0.18
9 3 0.09
10 20 0.59
11 5 0.15
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (10 bp):
TTCTTTCTTT
Found at i:11805320 original size:16 final size:16
Alignment explanation
Indices: 11805299--11805333 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
11805289 CACTATGTTC
*
11805299 TTTCTTTTTCTTTCTT
1 TTTCTTGTTCTTTCTT
11805315 TTTCTTGTTCTTTCTT
1 TTTCTTGTTCTTTCTT
11805331 TTT
1 TTT
11805334 TTCTTTACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (16 bp):
TTTCTTGTTCTTTCTT
Found at i:11822293 original size:18 final size:17
Alignment explanation
Indices: 11822260--11822298 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
11822250 TTTTATAAAT
11822260 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
11822278 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
11822295 TGTG
1 TGTG
11822299 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:11822551 original size:23 final size:23
Alignment explanation
Indices: 11822524--11822640 Score: 118
Period size: 23 Copynumber: 5.3 Consensus size: 23
11822514 AGTGTTATTG
11822524 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * * *
11822547 TTCA---GT-GCTACGACTATAT
1 ATCAGTGGTAGCTTCGGCTACAT
11822566 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * **
11822589 -TTAGTGGTAGCTACGGCTATGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
11822611 ATCAGTGGTAGCTTCAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
11822634 ATCAGTG
1 ATCAGTG
11822641 TGGCACTTAT
Statistics
Matches: 72, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
19 13 0.18
20 2 0.03
22 20 0.28
23 37 0.51
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:11822617 original size:45 final size:42
Alignment explanation
Indices: 11822524--11822640 Score: 155
Period size: 45 Copynumber: 2.7 Consensus size: 42
11822514 AGTGTTATTG
11822524 ATCAGTGGTAGCTTCGGCTACATTTCAGTGCTACGACTATAT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGCTACGACTATAT
* *
11822566 ATCAGTGGTAGCTTCGGCTACATTT-AGTGGTAGCTACGGCTATGT
1 ATCAGTGGTAGCTTCGGCTACATTTCA---GT-GCTACGACTATAT
* *
11822611 ATCAGTGGTAGCTTCAGCTACATATCAGTG
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTG
11822641 TGGCACTTAT
Statistics
Matches: 66, Mismatches: 4, Indels: 10
0.82 0.05 0.12
Matches are distributed among these distances:
41 1 0.02
42 26 0.39
43 2 0.03
44 2 0.03
45 34 0.52
46 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (42 bp):
ATCAGTGGTAGCTTCGGCTACATTTCAGTGCTACGACTATAT
Found at i:11825401 original size:54 final size:54
Alignment explanation
Indices: 11825284--11825401 Score: 157
Period size: 54 Copynumber: 2.2 Consensus size: 54
11825274 GTATCATACA
* *
11825284 GCCTAAGACACGACCGTGTGAATCAAGTCAGTGAGTTACACGGTCTAGCACACG
1 GCCTACGACACGACCGTGTGAATCAAGTCAGAGAGTTACACGGTCTAGCACACG
* * ** *
11825338 GCTTGCGACACGGTCGTGTGACA-CAAGTCAGAGAGTTACACGGTCTAGCACATG
1 GCCTACGACACGACCGTGTGA-ATCAAGTCAGAGAGTTACACGGTCTAGCACACG
11825392 GCCTACGACA
1 GCCTACGACA
11825402 TGGCCATGTC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 53 0.98
55 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.27, T:0.19
Consensus pattern (54 bp):
GCCTACGACACGACCGTGTGAATCAAGTCAGAGAGTTACACGGTCTAGCACACG
Found at i:11825419 original size:54 final size:54
Alignment explanation
Indices: 11825307--11825432 Score: 162
Period size: 54 Copynumber: 2.3 Consensus size: 54
11825297 CCGTGTGAAT
* * * * *
11825307 CAAGTCAGTGAGTTACACGGTCTAGCACACGGCTTGCGACACGGTCGTGTGACA
1 CAAGTCAGTGAGTTACACGGTCTAGCACACGGCCTACGACACGGCCATGTCACA
* * * *
11825361 CAAGTCAGAGAGTTACACGGTCTAGCACATGGCCTACGACATGGCCATGTCACC
1 CAAGTCAGTGAGTTACACGGTCTAGCACACGGCCTACGACACGGCCATGTCACA
*
11825415 CAAGTTAGTGAGTTACAC
1 CAAGTCAGTGAGTTACAC
11825433 AATTTAAGAC
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.21
Consensus pattern (54 bp):
CAAGTCAGTGAGTTACACGGTCTAGCACACGGCCTACGACACGGCCATGTCACA
Found at i:11837536 original size:25 final size:25
Alignment explanation
Indices: 11837499--11837550 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
11837489 CTATTTTTAC
11837499 ATAGAAAAATGTCACATCTTCACGG
1 ATAGAAAAATGTCACATCTTCACGG
*
11837524 ATAGAAAAGTGTCACATCTTCACGG
1 ATAGAAAAATGTCACATCTTCACGG
11837549 AT
1 AT
11837551 CACAAAAGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (25 bp):
ATAGAAAAATGTCACATCTTCACGG
Found at i:11839493 original size:22 final size:22
Alignment explanation
Indices: 11839446--11839495 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
11839436 TTGAGTTCTA
*
11839446 TTAGTTAAGTGGATTAAATAGTC
1 TTAG-TAAGTGGATTAAATAGAC
*
11839469 TTAGTAAGATGGATT-AATGGAC
1 TTAGTAAG-TGGATTAAATAGAC
11839491 TTAGT
1 TTAGT
11839496 GAGTAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.38
Consensus pattern (22 bp):
TTAGTAAGTGGATTAAATAGAC
Found at i:11841743 original size:54 final size:54
Alignment explanation
Indices: 11841632--11841745 Score: 122
Period size: 54 Copynumber: 2.1 Consensus size: 54
11841622 ATACACGATC
* * * ** ** * *
11841632 GTGTGAATCAAGTCAGTGAGTTACACGGTCTGGCACACGCCCTGGGACATGGTT
1 GTGTGAATCAAGTCAGAGAGTTACACGGCCTGACACACAACCTACGACACGGCT
*
11841686 GTGTG-ATACAAGTCAGAGAGTTACACGGCCTGACACACAACCTACGAGACGGCT
1 GTGTGAAT-CAAGTCAGAGAGTTACACGGCCTGACACACAACCTACGACACGGCT
11841740 GTGTGA
1 GTGTGA
11841746 CCCAAGTTAG
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
53 2 0.04
54 46 0.96
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (54 bp):
GTGTGAATCAAGTCAGAGAGTTACACGGCCTGACACACAACCTACGACACGGCT
Found at i:11843266 original size:390 final size:390
Alignment explanation
Indices: 11841999--11843557 Score: 2804
Period size: 390 Copynumber: 4.0 Consensus size: 390
11841989 AATCAATTTT
11841999 AGTTAATTAATATTAAATGACATTATTGTTTTGTTTTGAAGTTAATTGTTCTAATTTGTACAGTA
1 AGTTAATTAATATTAAATGACATTATTGTTTTGTTTTGAAGTTAATTGTTCTAATTTGTACAGTA
*
11842064 ATGCTCCGTAACTCTAATTCGGCAACGGAGATGAGTTAGGGGTGTTACAAGAAAATACCAGGATA
66 ATGCTCCGTAACTCTAATTCGGCAACGAAGATGAGTTAGGGGTGTTACAAGAAAATACCAGGATA
*
11842129 TCATAAAAAAATAGGAATGTCTTCCTTAGTATGTGCTTAAAAAATGGAGTTCATCAGTCTTTGGA
131 TCATAAAAAAATAGGAATGTCTTCCTTAGTATGTGCTTAAAAAATGGAGTTCATCAGTCCTTGGA
11842194 AGGTAGAGGGAGAATTGGTGAGGCCAAAAGGCATCACTAAAAACTCATAGTGACCTTCATGAGTT
196 AGGTAGAGGGAGAATTGGTGAGGCCAAAAGGCATCACTAAAAACTCATAGTGACCTTCATGAGTT
11842259 TTGAAGGTTTTTCATGGAATGTCAGGCTCAATTATTCTGATCTATTGGTATCCAACCATGATACG
261 TTGAAGGTTTTTCATGGAATGTCAGGCTCAATTATTCTGATCTATTGGTATCCAACCATGATACG
**
11842324 ATCCTGGCTTTGTCGAATGATCCGAGTCATTTATAAGTTCGATCGTCTAACAAGAAGTATCATTC
326 ATCCTGGCTCCGTCGAATGATCCGAGTCATTTATAAGTTCGATCGTCTAACAAGAAGTATCATTC
*
11842389 AGTTAATTAATATTAAATGACATTATTGTTTTGTTTTGAAGTTAATTATTCTAATTTGTACAGTA
1 AGTTAATTAATATTAAATGACATTATTGTTTTGTTTTGAAGTTAATTGTTCTAATTTGTACAGTA
11842454 ATGCTCCGTAACTCTAATTCGGCAACGGAA-ATGAGTTAGGGGTGTTACAAGAAAATACCAGGAT
66 ATGCTCCGTAACTCTAATTCGGCAAC-GAAGATGAGTTAGGGGTGTTACAAGAAAATACCAGGAT
11842518 ATCAT-AAAAAA-AGGAATGTCTTCCTTAGTATGTGCTTAAAAAATGGAGTTCATCAGTCCTTGG
130 ATCATAAAAAAATAGGAATGTCTTCCTTAGTATGTGCTTAAAAAATGGAGTTCATCAGTCCTTGG
*
11842581 GAGGTAGAGGGAGAATTGGTGAGGCCAAAAGGCATCACTAAAAACTCATAGTGACCTTCATGAGT
195 AAGGTAGAGGGAGAATTGGTGAGGCCAAAAGGCATCACTAAAAACTCATAGTGACCTTCATGAGT
* *
11842646 TTTGAAGGTTTTTCATGGAATGTTAGGCTCAATTATCCTGATCTATTGGTATCCAACCATGATAC
260 TTTGAAGGTTTTTCATGGAATGTCAGGCTCAATTATTCTGATCTATTGGTATCCAACCATGATAC
* * *
11842711 GATCCTGGCTTCGTCGAATGATCCGAGTCATTTATAAGTTCGATCATCTAACAAGAAGTATTATT
325 GATCCTGGCTCCGTCGAATGATCCGAGTCATTTATAAGTTCGATCGTCTAACAAGAAGTATCATT
11842776 C
390 C
11842777 AGTTAATTAATATTAAATGACATTATTGTTTTGTTTTGAAGTTAATTGTTCTAATTTGTACAGTA
1 AGTTAATTAATATTAAATGACATTATTGTTTTGTTTTGAAGTTAATTGTTCTAATTTGTACAGTA
* *
11842842 ATGCTCCGTAACTCTAATTCGGCAACGGAGATGAGTTAGGGTTGTTACAAGAAAATACCAGGATA
66 ATGCTCCGTAACTCTAATTCGGCAACGAAGATGAGTTAGGGGTGTTACAAGAAAATACCAGGATA
* * *
11842907 TCATAAAAAAA-AGGAATGTCTTCATTAGTTTTTGCTTAAAAAATGGAGTTCATCAGTCCTTGGA
131 TCATAAAAAAATAGGAATGTCTTCCTTAGTATGTGCTTAAAAAATGGAGTTCATCAGTCCTTGGA
*
11842971 AGGTAGAGGGAGAATTGGTGAGGCCAAAAGGCATCACAAAAAACTCATAGTGACCTTCATGAGTT
196 AGGTAGAGGGAGAATTGGTGAGGCCAAAAGGCATCACTAAAAACTCATAGTGACCTTCATGAGTT
***
11843036 TTGAAGGTTTTTCATGGAATGTCAGGCTCAATTATTCTGATCTATTGGTATCTTGGCCATGATAC
261 TTGAAGGTTTTTCATGGAATGTCAGGCTCAATTATTCTGATCTATTGGTATC-CAACCATGATAC
*
11843101 GATCCTGGCTCCGTTGAATGATCCGAGTCATTTATAAGTTCGATCGTCTAACAAGAAGTATCATT
325 GATCCTGGCTCCGTCGAATGATCCGAGTCATTTATAAGTTCGATCGTCTAACAAGAAGTATCATT
11843166 C
390 C
11843167 AGTTAATTAATATTAAATGACATTATTGTTTTGTTTTGAAGTTAATTGTTCTAATTTGTACAGTA
1 AGTTAATTAATATTAAATGACATTATTGTTTTGTTTTGAAGTTAATTGTTCTAATTTGTACAGTA
11843232 ATGCTCCGTAACTCTAATTCGGCAACGAAGATGAGTTAGGGGTGTTACAAGAAAATACCAGGATA
66 ATGCTCCGTAACTCTAATTCGGCAACGAAGATGAGTTAGGGGTGTTACAAGAAAATACCAGGATA
11843297 TCATAAAAAAATAGGAATGTCTTCCTTAGTATGTGCTTAAAAAATGGAGTTCATCAGTCCTTGGA
131 TCATAAAAAAATAGGAATGTCTTCCTTAGTATGTGCTTAAAAAATGGAGTTCATCAGTCCTTGGA
* * *
11843362 AGGTAGAGGGTGAATTGGTGAGGCCGAAAGGCATCACCAAAAACTCATAGTGACCTTCATGAGTT
196 AGGTAGAGGGAGAATTGGTGAGGCCAAAAGGCATCACTAAAAACTCATAGTGACCTTCATGAGTT
* *
11843427 TTGAAGGTTTTTCATGGAACGTCAGGCTCAATTATTCTGATCTATTGGTATCCTACCATGATACG
261 TTGAAGGTTTTTCATGGAATGTCAGGCTCAATTATTCTGATCTATTGGTATCCAACCATGATACG
* *
11843492 AT-CTCGGCTCTGTCGAATGATCGGAGTCATTTATAAGTTCGATCGTCTAACAAGAAGTATCATT
326 ATCCT-GGCTCCGTCGAATGATCCGAGTCATTTATAAGTTCGATCGTCTAACAAGAAGTATCATT
11843556 C
390 C
11843557 A
1 A
11843558 TTTACGTTGT
Statistics
Matches: 1122, Mismatches: 41, Indels: 12
0.95 0.03 0.01
Matches are distributed among these distances:
387 2 0.00
388 369 0.33
389 177 0.16
390 409 0.36
391 165 0.15
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (390 bp):
AGTTAATTAATATTAAATGACATTATTGTTTTGTTTTGAAGTTAATTGTTCTAATTTGTACAGTA
ATGCTCCGTAACTCTAATTCGGCAACGAAGATGAGTTAGGGGTGTTACAAGAAAATACCAGGATA
TCATAAAAAAATAGGAATGTCTTCCTTAGTATGTGCTTAAAAAATGGAGTTCATCAGTCCTTGGA
AGGTAGAGGGAGAATTGGTGAGGCCAAAAGGCATCACTAAAAACTCATAGTGACCTTCATGAGTT
TTGAAGGTTTTTCATGGAATGTCAGGCTCAATTATTCTGATCTATTGGTATCCAACCATGATACG
ATCCTGGCTCCGTCGAATGATCCGAGTCATTTATAAGTTCGATCGTCTAACAAGAAGTATCATTC
Found at i:11849015 original size:33 final size:33
Alignment explanation
Indices: 11848951--11849015 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
11848941 AAATTATAAG
* * * *
11848951 TATTATATGTACTCTAATACTTTATTTATTATT
1 TATTAGATGTAATCTAATACTTAATTAATTATT
11848984 TATTAGATGTAATCTAATGA-TTAATTAATTAT
1 TATTAGATGTAATCTAAT-ACTTAATTAATTAT
11849016 GATTATGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (33 bp):
TATTAGATGTAATCTAATACTTAATTAATTATT
Found at i:11849022 original size:6 final size:6
Alignment explanation
Indices: 11849011--11849039 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
11849001 TGATTAATTA
11849011 ATTATG ATTATG ATTATG ATTATG ATTAT
1 ATTATG ATTATG ATTATG ATTATG ATTAT
11849040 AAGAGAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (6 bp):
ATTATG
Found at i:11856457 original size:38 final size:39
Alignment explanation
Indices: 11856345--11856457 Score: 140
Period size: 40 Copynumber: 2.9 Consensus size: 39
11856335 GGCGTTTGTA
* *
11856345 TAAAAAAAGCCGCTAAAAATCAAGCATTA-CTGGCGCTTT
1 TAAAAAAAGCCGCTAAAAATCGAGTATTAGC-GGCGCTTT
* *
11856384 TAAAAAAACGCCACTAAAGATCGAGTATTAGCGGCGCTTT
1 TAAAAAAA-GCCGCTAAAAATCGAGTATTAGCGGCGCTTT
**
11856424 TTGAAAAAGCCGCTAAAAAT-GAGTATTAGCGGCG
1 TAAAAAAAGCCGCTAAAAATCGAGTATTAGCGGCG
11856458 TTTCCCAAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
38 14 0.22
39 18 0.28
40 31 0.48
41 1 0.02
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (39 bp):
TAAAAAAAGCCGCTAAAAATCGAGTATTAGCGGCGCTTT
Found at i:11856480 original size:38 final size:38
Alignment explanation
Indices: 11856348--11856470 Score: 106
Period size: 40 Copynumber: 3.2 Consensus size: 38
11856338 GTTTGTATAA
* * ***
11856348 AAAAAGCCGCTAAAAATCAAGCATTA-CTGGCGCTTTTAA
1 AAAAAGCCGCTAAAAAT-GAGTATTAGC-GGCGCTTTCCC
* * ***
11856387 AAAAACGCCACTAAAGATCGAGTATTAGCGGCGCTTTTTG
1 AAAAA-GCCGCTAAAAAT-GAGTATTAGCGGCGCTTTCCC
11856427 AAAAAGCCGCTAAAAATGAGTATTAGCGGCG-TTTCCC
1 AAAAAGCCGCTAAAAATGAGTATTAGCGGCGCTTTCCC
11856464 AAAAAGC
1 AAAAAGC
11856471 GTCGCAAAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
37 10 0.14
38 14 0.20
39 15 0.21
40 31 0.44
41 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (38 bp):
AAAAAGCCGCTAAAAATGAGTATTAGCGGCGCTTTCCC
Found at i:11856773 original size:41 final size:41
Alignment explanation
Indices: 11856505--11856773 Score: 322
Period size: 41 Copynumber: 6.6 Consensus size: 41
11856495 ATTTCGGGGA
* * * * * *
11856505 TTTAGCGACGTTTCTGAAGAAGTGCCGCTAATGCTCGGGGC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTGGTC
* * * * *
11856546 TTTAGCGGCGTTTCTCAAGAAGCGCCGCTAATGCTCGGGGC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTGGTC
* * **
11856587 TTTAGCGGTGTTTTTGGAAATTCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTGGTC
*
11856628 TTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTGGTC
* * * *
11856669 TTTAGCGACATTTTTGGAAAAGCGCCGCTAATGCTCTAGTC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTGGTC
* *
11856710 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCTAGTC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTGGTC
**
11856751 TTTAGCGGCACTTTTGAAAAAGC
1 TTTAGCGGCGTTTTTGAAAAAGC
11856774 TCTGCAAAAA
Statistics
Matches: 203, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 203 1.00
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.31
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTGGTC
Found at i:11857255 original size:14 final size:15
Alignment explanation
Indices: 11857236--11857269 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
11857226 TAGGTTTTAA
11857236 GGGTTTAAGGGTT-G
1 GGGTTTAAGGGTTAG
*
11857250 GGGTTTAAGGTTTAG
1 GGGTTTAAGGGTTAG
11857265 GGGTT
1 GGGTT
11857270 AGTAGTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.15, C:0.00, G:0.47, T:0.38
Consensus pattern (15 bp):
GGGTTTAAGGGTTAG
Found at i:11861239 original size:43 final size:43
Alignment explanation
Indices: 11861191--11861275 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
11861181 AATGATGTAC
* * * *
11861191 AAGATTTTCTTGATTAAGTAAATGTATTATATCTTTTATTACT
1 AAGATTTACTTAATTAAGAAAATGCATTATATCTTTTATTACT
* *
11861234 AAGATTTACTTAATTAAGAAAATGCATTGTATGTTTTATTAC
1 AAGATTTACTTAATTAAGAAAATGCATTATATCTTTTATTAC
11861276 CTTGCATATG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.35, C:0.07, G:0.11, T:0.47
Consensus pattern (43 bp):
AAGATTTACTTAATTAAGAAAATGCATTATATCTTTTATTACT
Found at i:11861650 original size:43 final size:43
Alignment explanation
Indices: 11861556--11861797 Score: 274
Period size: 43 Copynumber: 5.7 Consensus size: 43
11861546 TATGTTTTAC
* * *
11861556 CGGCGTTTGTGTGAAAAGCACCGCTAAAGGTC-T-ATTCTATAG
1 CGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGA-TCTATAG
* * *
11861598 TGGCGTTTGTGGGAAAAGCGTCGCTAAAAGTGATGATCTATAG
1 CGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAG
* *
11861641 CGGCGTTTGTGGGAAAAGCGACGCTAAAAGTCATGACCTATAG
1 CGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAG
*
11861684 CGGCGTTTGTGGGAAAAGTGCCGCTAAAAGTCATGATCCT-TAG
1 CGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGAT-CTATAG
* * * * * *
11861727 CGGCGATTGTTGGAAAAGCGCCACTAAAGGTCTTGTTCTATAG
1 CGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAG
* ** *
11861770 CAGCGTTTGTTTGAAAAGCGTCGCTAAA
1 CGGCGTTTGTGGGAAAAGCGCCGCTAAA
11861798 GGTCTTTGAT
Statistics
Matches: 171, Mismatches: 25, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
42 28 0.16
43 140 0.82
44 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (43 bp):
CGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAG
Found at i:11862638 original size:20 final size:20
Alignment explanation
Indices: 11862610--11862657 Score: 71
Period size: 19 Copynumber: 2.4 Consensus size: 20
11862600 TTTAAAAAGA
11862610 AAAAGAAAAAGCAAAAAGCGC
1 AAAA-AAAAAGCAAAAAGCGC
*
11862631 -AAAAAAAAGCAAAAAGCGT
1 AAAAAAAAAGCAAAAAGCGC
11862650 AAAAAAAA
1 AAAAAAAA
11862658 CCGCAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.73, C:0.10, G:0.15, T:0.02
Consensus pattern (20 bp):
AAAAAAAAAGCAAAAAGCGC
Found at i:11885118 original size:45 final size:45
Alignment explanation
Indices: 11885054--11885181 Score: 166
Period size: 45 Copynumber: 2.8 Consensus size: 45
11885044 TATACGCCTA
**
11885054 AAATGAGTAAGACTGTAGCTGAAAGATGCTATGACATCATGACAG
1 AAATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGACAG
***
11885099 AAATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGGTTG
1 AAATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGACAG
** * * *
11885144 TTAGGACTAAGACCATAGCTGAAAGATGCTATGGCATC
1 AAATGAGTAAGACCATAGCTGAAAGATGCTATGACATC
11885182 CTTTGATAGT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 73 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATGACAG
Found at i:11885350 original size:27 final size:27
Alignment explanation
Indices: 11885267--11885420 Score: 121
Period size: 27 Copynumber: 5.7 Consensus size: 27
11885257 TAGTCCATCA
* * *
11885267 GGACATCAAACACTGGATAGTTCGATG
1 GGACATTAAACACGGGATAGTCCGATG
** * * * *
11885294 GGATGTTAAGCATGAGATAGTCCAATG
1 GGACATTAAACACGGGATAGTCCGATG
**
11885321 GGACATTAAACACGGGATAGTCCGGCG
1 GGACATTAAACACGGGATAGTCCGATG
* * *
11885348 GGACGTTAAACATGGTATAG-CCTGATG
1 GGACATTAAACACGGGATAGTCC-GATG
* ** *
11885375 AGACGGTAAACACGAGATAGTCCGATG
1 GGACATTAAACACGGGATAGTCCGATG
*
11885402 GGACATTAAACATGGGATA
1 GGACATTAAACACGGGATA
11885421 CTCTATTAGG
Statistics
Matches: 93, Mismatches: 32, Indels: 4
0.72 0.25 0.03
Matches are distributed among these distances:
26 2 0.02
27 89 0.96
28 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (27 bp):
GGACATTAAACACGGGATAGTCCGATG
Found at i:11891891 original size:27 final size:27
Alignment explanation
Indices: 11891857--11892037 Score: 197
Period size: 27 Copynumber: 6.7 Consensus size: 27
11891847 ACACACCGGA
11891857 GAAATGGAAGCCTTTGTGGCAATATAT
1 GAAATGGAAGCCTTTGTGGCAATATAT
* *
11891884 GACATGGAAGCCTTTGTGGCAATCTAT
1 GAAATGGAAGCCTTTGTGGCAATATAT
* * *
11891911 GAAATGGAAGCCTTTAT-G-ATGTATCT
1 GAAATGGAAGCCTTTGTGGCA-ATATAT
* * * *
11891937 GAAATAGAAGCCTTTGTGAC-GTATCT
1 GAAATGGAAGCCTTTGTGGCAATATAT
*
11891963 GAAATGGAAGCCTTTGTGGCAATCTAT
1 GAAATGGAAGCCTTTGTGGCAATATAT
* * *
11891990 GAAACGGAAGCCTTTGTGGCGATCTAT
1 GAAATGGAAGCCTTTGTGGCAATATAT
*
11892017 GAAAAGGAAGGCCTTTGTGGC
1 GAAATGGAA-GCCTTTGTGGC
11892038 GTAGTCTAAA
Statistics
Matches: 131, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
25 1 0.01
26 43 0.33
27 76 0.58
28 11 0.08
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (27 bp):
GAAATGGAAGCCTTTGTGGCAATATAT
Found at i:11891946 original size:26 final size:26
Alignment explanation
Indices: 11891857--11891977 Score: 109
Period size: 26 Copynumber: 4.6 Consensus size: 26
11891847 ACACACCGGA
* * * *
11891857 GAAATGGAAGCCTTTGTGGCAATATAT
1 GAAATGGAAGCCTTTATGAC-GTATCT
* * * *
11891884 GACATGGAAGCCTTTGTGGC-AATCTAT
1 GAAATGGAAGCCTTTATGACGTATC--T
*
11891911 GAAATGGAAGCCTTTATGATGTATCT
1 GAAATGGAAGCCTTTATGACGTATCT
* *
11891937 GAAATAGAAGCCTTTGTGACGTATCT
1 GAAATGGAAGCCTTTATGACGTATCT
11891963 GAAATGGAAGCCTTT
1 GAAATGGAAGCCTTT
11891978 GTGGCAATCT
Statistics
Matches: 79, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
25 2 0.03
26 38 0.48
27 36 0.46
28 3 0.04
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
GAAATGGAAGCCTTTATGACGTATCT
Found at i:11891989 original size:79 final size:80
Alignment explanation
Indices: 11891857--11892004 Score: 235
Period size: 79 Copynumber: 1.9 Consensus size: 80
11891847 ACACACCGGA
* * * *
11891857 GAAATGGAAGCCTTTGTGGCAATATATGACATGGAAGCCTTTGTGGCAATCTATGAAATGGAAGC
1 GAAATAGAAGCCTTTGTGACAATATATGAAATGGAAGCCTTTGTGGCAATCTATGAAACGGAAGC
11891922 CTTTATGATGTATCT
66 CTTTATGATGTATCT
* *
11891937 GAAATAGAAGCCTTTGTGAC-GTATCTGAAATGGAAGCCTTTGTGGCAATCTATGAAACGGAAGC
1 GAAATAGAAGCCTTTGTGACAATATATGAAATGGAAGCCTTTGTGGCAATCTATGAAACGGAAGC
11892001 CTTT
66 CTTT
11892005 GTGGCGATCT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 44 0.71
80 18 0.29
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (80 bp):
GAAATAGAAGCCTTTGTGACAATATATGAAATGGAAGCCTTTGTGGCAATCTATGAAACGGAAGC
CTTTATGATGTATCT
Found at i:11892202 original size:27 final size:27
Alignment explanation
Indices: 11892172--11892391 Score: 142
Period size: 27 Copynumber: 8.2 Consensus size: 27
11892162 GACTGGATGG
* *
11892172 TATGGTAAATATTGAAGGAATAGTACA
1 TATGGAAAATACTGAAGGAATAGTACA
*
11892199 TATGGAAAATACTAAAGGAATAGTACA
1 TATGGAAAATACTGAAGGAATAGTACA
* * * *
11892226 TATGGTGAACT-CTGAAAGAATAGTACG
1 TATGG-AAAATACTGAAGGAATAGTACA
* * *
11892253 TATGGAAAACACTAAAGGAATGGTACA
1 TATGGAAAATACTGAAGGAATAGTACA
** * *
11892280 TATGGCGAACACTGAAGGAATAATACA
1 TATGGAAAATACTGAAGGAATAGTACA
* * * *
11892307 TATAGTG-AACT-CTAAATGAATAGTACG
1 TAT-G-GAAAATACTGAAGGAATAGTACA
* * * *
11892334 TATGCAAAA-ACTAAAAGAATGGTACA
1 TATGGAAAATACTGAAGGAATAGTACA
* ** * *
11892360 TCTGGCGAACACTGAAGGAATAGTACG
1 TATGGAAAATACTGAAGGAATAGTACA
11892387 TATGG
1 TATGG
11892392 TGAAAATTGA
Statistics
Matches: 145, Mismatches: 41, Indels: 14
0.73 0.20 0.07
Matches are distributed among these distances:
26 23 0.16
27 116 0.80
28 5 0.03
29 1 0.01
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.23
Consensus pattern (27 bp):
TATGGAAAATACTGAAGGAATAGTACA
Found at i:11892230 original size:54 final size:54
Alignment explanation
Indices: 11892172--11892392 Score: 185
Period size: 54 Copynumber: 4.1 Consensus size: 54
11892162 GACTGGATGG
* *
11892172 TATGGTAAATATTGAAGGAATAGTACATATGGAAAATACTAAAGGAATAGTACA
1 TATGGTAAATACTGAAGGAATAGTACATATGGAAAACACTAAAGGAATAGTACA
* * * *
11892226 TATGGTGAACT-CTGAAAGAATAGTACGTATGGAAAACACTAAAGGAATGGTACA
1 TATGGT-AAATACTGAAGGAATAGTACATATGGAAAACACTAAAGGAATAGTACA
** * * * ** * * *
11892280 TATGGCGAACACTGAAGGAATAATACATATAGTGAACTCTAAATGAATAGTACG
1 TATGGTAAATACTGAAGGAATAGTACATATGGAAAACACTAAAGGAATAGTACA
* * * * * * ** * *
11892334 TAT-GCAAAAACTAAAAGAATGGTACATCTGGCGAACACTGAAGGAATAGTACG
1 TATGGTAAATACTGAAGGAATAGTACATATGGAAAACACTAAAGGAATAGTACA
11892387 TATGGT
1 TATGGT
11892393 GAAAATTGAG
Statistics
Matches: 131, Mismatches: 33, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
53 42 0.32
54 86 0.66
55 3 0.02
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (54 bp):
TATGGTAAATACTGAAGGAATAGTACATATGGAAAACACTAAAGGAATAGTACA
Found at i:11892298 original size:81 final size:80
Alignment explanation
Indices: 11892186--11892395 Score: 296
Period size: 81 Copynumber: 2.6 Consensus size: 80
11892176 GTAAATATTG
* ** * *
11892186 AAGGAATAGTACATATGGAAAATACTAAAGGAATAGTACATATGGTGAACTCTGAAA-GAATAGT
1 AAGGAATGGTACATATGGCGAACACTGAAGGAATAGTACATATGGTGAACTCT-AAATGAATAGT
*
11892250 ACGTATGGAAAACACTA
65 ACGTATGCAAAA-ACTA
* *
11892267 AAGGAATGGTACATATGGCGAACACTGAAGGAATAATACATATAGTGAACTCTAAATGAATAGTA
1 AAGGAATGGTACATATGGCGAACACTGAAGGAATAGTACATATGGTGAACTCTAAATGAATAGTA
11892332 CGTATGCAAAAACTA
66 CGTATGCAAAAACTA
* * *
11892347 AAAGAATGGTACATCTGGCGAACACTGAAGGAATAGTACGTATGGTGAA
1 AAGGAATGGTACATATGGCGAACACTGAAGGAATAGTACATATGGTGAA
11892396 AATTGAGAGA
Statistics
Matches: 115, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
80 51 0.44
81 64 0.56
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (80 bp):
AAGGAATGGTACATATGGCGAACACTGAAGGAATAGTACATATGGTGAACTCTAAATGAATAGTA
CGTATGCAAAAACTA
Found at i:11896617 original size:15 final size:16
Alignment explanation
Indices: 11896589--11896618 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
11896579 TTACTTATCT
11896589 TTGTTCTCTTATTCTC
1 TTGTTCTCTTATTCTC
11896605 TTGTTCT-TTATTCT
1 TTGTTCTCTTATTCT
11896619 TTATTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.07, C:0.20, G:0.07, T:0.67
Consensus pattern (16 bp):
TTGTTCTCTTATTCTC
Found at i:11897366 original size:18 final size:18
Alignment explanation
Indices: 11897326--11897373 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
11897316 TTGTAATTAA
*
11897326 AATTTTTAAAATATAATT
1 AATTTTAAAAATATAATT
*
11897344 AATTTTAAAAATATTTATT
1 AATTTTAAAAATA-TAATT
11897363 -ATTTTAAAAAT
1 AATTTTAAAAAT
11897374 TATCTTTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 23 0.85
19 4 0.15
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTTTAAAAATATAATT
Found at i:11898787 original size:4 final size:4
Alignment explanation
Indices: 11898778--11898814 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
11898768 ATCTGTTTCA
11898778 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT T
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT T
11898815 TACCAACCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (4 bp):
TAAT
Found at i:11900330 original size:22 final size:20
Alignment explanation
Indices: 11900309--11900349 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
11900299 TTAATATAAT
11900309 TAATATTTTTTATTATTTTAA
1 TAAT-TTTTTTATTATTTTAA
11900330 TAATTTTTTAATATTATTTT
1 TAATTTTTT--TATTATTTT
11900350 TTATTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 4 0.22
22 9 0.50
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TAATTTTTTTATTATTTTAA
Found at i:11900331 original size:18 final size:19
Alignment explanation
Indices: 11900289--11900344 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
11900279 ATTAATCATA
* * *
11900289 TAATAAATTATTAATATAAT
1 TAATAATTTTTTAATAT-TT
*
11900309 TAAT-ATTTTTTATTATTT
1 TAATAATTTTTTAATATTT
11900327 TAATAATTTTTTAATATT
1 TAATAATTTTTTAATATT
11900345 ATTTTTTATT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 5 0.17
19 21 0.70
20 4 0.13
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TAATAATTTTTTAATATTT
Found at i:11900342 original size:29 final size:29
Alignment explanation
Indices: 11900308--11900375 Score: 95
Period size: 29 Copynumber: 2.3 Consensus size: 29
11900298 ATTAATATAA
*
11900308 TTAATATTTTTTATTATTTTAATAAT-TTT
1 TTAATATTTTTT-TTATTTTAATAATAATT
11900337 TTAATATTATTTTTTATTTTAATAATAATT
1 TTAATATT-TTTTTTATTTTAATAATAATT
11900367 TTAA-ATTTT
1 TTAATATTTT
11900376 AAAAAATATT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
28 2 0.06
29 24 0.67
30 10 0.28
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (29 bp):
TTAATATTTTTTTTATTTTAATAATAATT
Found at i:11901337 original size:24 final size:24
Alignment explanation
Indices: 11901305--11901352 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
11901295 TTGACCGAGA
11901305 TAAATTATGATTTACTCAGTAAAC
1 TAAATTATGATTTACTCAGTAAAC
11901329 TAAATTATGATTTACTCAGTAAAC
1 TAAATTATGATTTACTCAGTAAAC
11901353 CTATCTCTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (24 bp):
TAAATTATGATTTACTCAGTAAAC
Found at i:11911514 original size:45 final size:45
Alignment explanation
Indices: 11911435--11911521 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
11911425 ATGATGTTAG
* * * * *
11911435 GTATTTAATATATTGTTGAAAACTGGAATGTTGTTAAATTATTAT
1 GTATTTAACATATTGTTAAAAAATGAAATATTGTTAAATTATTAT
*
11911480 GTATTTAGCATATTGTTAAAAAATGAAATATTGTTAAATTAT
1 GTATTTAACATATTGTTAAAAAATGAAATATTGTTAAATTAT
11911522 GAATTGAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.45
Consensus pattern (45 bp):
GTATTTAACATATTGTTAAAAAATGAAATATTGTTAAATTATTAT
Found at i:11911729 original size:21 final size:21
Alignment explanation
Indices: 11911704--11911841 Score: 80
Period size: 21 Copynumber: 6.6 Consensus size: 21
11911694 TGAGCTTCTG
*
11911704 TTAACTCATATGAGTTTCAGT
1 TTAACTCTTATGAGTTTCAGT
* * *
11911725 TTAACCCTTATGGGTTTCCGT
1 TTAACTCTTATGAGTTTCAGT
* * * *
11911746 TCAGCTCTTTTGAGCTTCAGT
1 TTAACTCTTATGAGTTTCAGT
* *
11911767 TTAACCCTTATGGGTTTCCA-T
1 TTAACTCTTATGAGTTT-CAGT
* * **
11911788 TCAACTCTTACGAGTTTCCCT
1 TTAACTCTTATGAGTTTCAGT
* * * *
11911809 TCAACCCTTATGGGTTTCTGT
1 TTAACTCTTATGAGTTTCAGT
* *
11911830 TTAGCACTTATG
1 TTAACTCTTATG
11911842 TGCTTTTGTG
Statistics
Matches: 85, Mismatches: 30, Indels: 4
0.71 0.25 0.03
Matches are distributed among these distances:
20 1 0.01
21 82 0.96
22 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (21 bp):
TTAACTCTTATGAGTTTCAGT
Found at i:11911766 original size:42 final size:42
Alignment explanation
Indices: 11911706--11911826 Score: 161
Period size: 42 Copynumber: 2.9 Consensus size: 42
11911696 AGCTTCTGTT
* *
11911706 AACTCATATGAGTTTCAGTTTAACCCTTATGGGTTTCCGTTC
1 AACTCTTATGAGTTTCAGTTTAACCCTTATGGGTTTCCATTC
* * *
11911748 AGCTCTTTTGAGCTTCAGTTTAACCCTTATGGGTTTCCATTC
1 AACTCTTATGAGTTTCAGTTTAACCCTTATGGGTTTCCATTC
* ** *
11911790 AACTCTTACGAGTTTCCCTTCAACCCTTATGGGTTTC
1 AACTCTTATGAGTTTCAGTTTAACCCTTATGGGTTTC
11911827 TGTTTAGCAC
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (42 bp):
AACTCTTATGAGTTTCAGTTTAACCCTTATGGGTTTCCATTC
Found at i:11925202 original size:20 final size:20
Alignment explanation
Indices: 11925177--11925219 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
11925167 GGAAATAGAA
11925177 GATGATGCTTGACCGTATTG
1 GATGATGCTTGACCGTATTG
11925197 GATGATGCTTGACCGTATTG
1 GATGATGCTTGACCGTATTG
11925217 GAT
1 GAT
11925220 ATTTTTCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.14, G:0.30, T:0.35
Consensus pattern (20 bp):
GATGATGCTTGACCGTATTG
Found at i:11930693 original size:16 final size:16
Alignment explanation
Indices: 11930672--11930702 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11930662 AAATTAAAAT
*
11930672 TAATTAATTAAATTTC
1 TAATTAAATAAATTTC
11930688 TAATTAAATAAATTT
1 TAATTAAATAAATTT
11930703 TCTCAACCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
TAATTAAATAAATTTC
Found at i:11936609 original size:11 final size:11
Alignment explanation
Indices: 11936564--11936620 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
11936554 TCGACGGCAG
*
11936564 TATTAGGATAAA
1 TATTA-GATTAA
*
11936576 TATTACATTAA
1 TATTAGATTAA
11936587 TATTAGATATTAA
1 TATTAG--ATTAA
* *
11936600 TGTTAGATTAC
1 TATTAGATTAA
11936611 TATTAGATTA
1 TATTAGATTA
11936621 GGGTTTACTT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
11 22 0.59
12 5 0.14
13 10 0.27
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.44
Consensus pattern (11 bp):
TATTAGATTAA
Found at i:11939700 original size:36 final size:36
Alignment explanation
Indices: 11939648--11939716 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
11939638 TTTAGGAATT
* *
11939648 TGAGAATACCTAATATC-TTGTTTAGGAGCTTGGAAA
1 TGAGAAGACCTAATATCATT-TTCAGGAGCTTGGAAA
*
11939684 TGAGAAGACCTGATATCATTTTCAGGAGCTTGG
1 TGAGAAGACCTAATATCATTTTCAGGAGCTTGG
11939717 GAAGATCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
36 27 0.93
37 2 0.07
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (36 bp):
TGAGAAGACCTAATATCATTTTCAGGAGCTTGGAAA
Found at i:11952898 original size:23 final size:24
Alignment explanation
Indices: 11952851--11952896 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
11952841 GAAAAATATT
11952851 AAATATATATATTTTTTATTTTTA
1 AAATATATATATTTTTTATTTTTA
11952875 AAATATA-ATATTTTTTTATTTT
1 AAATATATATA-TTTTTTATTTT
11952897 AAGTTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (24 bp):
AAATATATATATTTTTTATTTTTA
Found at i:11953031 original size:59 final size:59
Alignment explanation
Indices: 11952963--11953132 Score: 304
Period size: 59 Copynumber: 2.9 Consensus size: 59
11952953 TCAAGTTTGT
*
11952963 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATAATTTGATAAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
*
11953022 TTTATTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
* *
11953081 TTTACTAATCAAATGTTAGATTTTATCACAACAATTAATACAATTAACAATT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATT
11953133 AATAATTTGA
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 106 1.00
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (59 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
Found at i:11953164 original size:16 final size:16
Alignment explanation
Indices: 11953143--11953182 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
11953133 AATAATTTGA
11953143 TAATTTTACTAACAAT
1 TAATTTTACTAACAAT
*
11953159 TAATTTTATTAACAAT
1 TAATTTTACTAACAAT
*
11953175 TAGTTTTA
1 TAATTTTA
11953183 ATTTTATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (16 bp):
TAATTTTACTAACAAT
Found at i:11953173 original size:59 final size:66
Alignment explanation
Indices: 11953052--11953176 Score: 165
Period size: 66 Copynumber: 2.0 Consensus size: 66
11953042 TTTTATTACA
11953052 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATCACAACAATT
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAA-GTTAGATTTTAT-ACAACAATT
11953117 AAT
64 AAT
* *
11953120 ACAATT-A-ACAATTAATAATTTGATAATTTTACTAA-C-AA-TTA-ATTTTAT-TAACAATTA
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAAGTTAGATTTTATACAACAATTA
11953177 GTTTTAATTT
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
59 8 0.15
61 7 0.13
62 3 0.05
64 2 0.04
65 1 0.02
66 27 0.49
67 1 0.02
68 6 0.11
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (66 bp):
ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAAGTTAGATTTTATACAACAATTAA
T
Found at i:11953204 original size:21 final size:21
Alignment explanation
Indices: 11953158--11953217 Score: 84
Period size: 22 Copynumber: 2.8 Consensus size: 21
11953148 TTACTAACAA
* *
11953158 TTAATTTTATTAACAATTAGTT
1 TTAATTTTATTAA-AAATAATT
11953180 TTAATTTTATTAAAAATAATT
1 TTAATTTTATTAAAAATAATT
11953201 TTAATTTTAATTAAAAA
1 TTAATTTT-ATTAAAAA
11953218 CGGGCCGGGC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.40
22 21 0.60
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (21 bp):
TTAATTTTATTAAAAATAATT
Found at i:11954474 original size:22 final size:22
Alignment explanation
Indices: 11954432--11954476 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
11954422 TGTAACAAGA
**
11954432 TTTTAATTTAACATGTTTAATT
1 TTTTAATTTAACATGAATAATT
*
11954454 TTTTAATTTAACTTGAATAATT
1 TTTTAATTTAACATGAATAATT
11954476 T
1 T
11954477 CACTAGATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.58
Consensus pattern (22 bp):
TTTTAATTTAACATGAATAATT
Found at i:11962312 original size:24 final size:22
Alignment explanation
Indices: 11962277--11962320 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
11962267 TAGGTTAATA
11962277 CTATGCACAAAGCACAACCTGG
1 CTATGCACAAAGCACAACCTGG
*
11962299 CTATGACACCAAAGTACAACCT
1 CTATG-CA-CAAAGCACAACCT
11962321 TTTCTCGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 2 0.11
24 12 0.63
ACGTcount: A:0.39, C:0.32, G:0.14, T:0.16
Consensus pattern (22 bp):
CTATGCACAAAGCACAACCTGG
Found at i:11976466 original size:85 final size:85
Alignment explanation
Indices: 11976353--11976508 Score: 217
Period size: 85 Copynumber: 1.8 Consensus size: 85
11976343 AACAGAATAG
* * **
11976353 GAAAGCCTTTTTGGTGAACCTTTAAAAGGAAAGCCTTTTTGGCGAACCTCT-AGAAGGAAAGCCT
1 GAAAGCCTTTTTGATGAACCTTTAAAAGGAAAGCCTTTATGGAAAACCTCTGA-AAGGAAAGCCT
11976417 TTGTGGCGAACTTCCAAAAAT
65 TTGTGGCGAACTTCCAAAAAT
* * *
11976438 GAAAG-CTTTTGTGATGAACCTTTGAAAGGAAAGCCTTTATGGAAAACTTCTGAAAGGAGAGCCT
1 GAAAGCCTTTT-TGATGAACCTTTAAAAGGAAAGCCTTTATGGAAAACCTCTGAAAGGAAAGCCT
11976502 TTGTGGC
65 TTGTGGC
11976509 AACCTTCGAA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
84 5 0.08
85 56 0.90
86 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (85 bp):
GAAAGCCTTTTTGATGAACCTTTAAAAGGAAAGCCTTTATGGAAAACCTCTGAAAGGAAAGCCTT
TGTGGCGAACTTCCAAAAAT
Found at i:11976515 original size:28 final size:28
Alignment explanation
Indices: 11976351--11976536 Score: 130
Period size: 28 Copynumber: 6.6 Consensus size: 28
11976341 CTAACAGAAT
* *
11976351 AGGAAAGCCTTTTTGGTGAACCTT-TAAA
1 AGGAAAGCCTTTGTGG-CAACCTTCTAAA
* *
11976379 AGGAAAGCCTTTTTGGCGAACC-TCTAGA
1 AGGAAAGCCTTTGTGGC-AACCTTCTAAA
*
11976407 AGGAAAGCCTTTGTGGCGAA-CTTCCAAAA
1 AGGAAAGCCTTTGTGGC-AACCTT-CTAAA
* * *
11976436 ATGAAAGCTTTTGTGATG-AACCTT-TGAA
1 AGGAAAGCCTTTGTG--GCAACCTTCTAAA
* * * *
11976464 AGGAAAGCCTTTATGGAAAACTTCTGAA
1 AGGAAAGCCTTTGTGGCAACCTTCTAAA
* * *
11976492 AGGAGAGCCTTTGTGGCAACCTTCGAAG
1 AGGAAAGCCTTTGTGGCAACCTTCTAAA
* *
11976520 ATGAAAGTCTTTGTGGC
1 AGGAAAGCCTTTGTGGC
11976537 GTATTAGGAA
Statistics
Matches: 126, Mismatches: 23, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
26 1 0.01
27 7 0.06
28 96 0.76
29 18 0.14
30 3 0.02
31 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (28 bp):
AGGAAAGCCTTTGTGGCAACCTTCTAAA
Found at i:11976628 original size:27 final size:27
Alignment explanation
Indices: 11976545--11976629 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
11976535 GCGTATTAGG
* **
11976545 AAAGAAAGCCCTTGTGGCAATCTCTAT
1 AAAGAAAGCCTTTGTGGCAATCTAAAT
* ** * **
11976572 AATGGGAGCCTTTGTGGCTAA-CCACGT
1 AAAGAAAGCCTTTGTGGC-AATCTAAAT
11976599 AAAGAAAGCCTTTGTGGCAATCTAAAT
1 AAAGAAAGCCTTTGTGGCAATCTAAAT
11976626 AAAG
1 AAAG
11976630 GAAGGTTTAT
Statistics
Matches: 42, Mismatches: 14, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
26 2 0.05
27 38 0.90
28 2 0.05
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
AAAGAAAGCCTTTGTGGCAATCTAAAT
Found at i:11983553 original size:14 final size:14
Alignment explanation
Indices: 11983536--11983562 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
11983526 ATTTTTATCT
11983536 TTTAATTTTCTTAG
1 TTTAATTTTCTTAG
11983550 TTTAATTTTCTTA
1 TTTAATTTTCTTA
11983563 CTTAAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.04, T:0.67
Consensus pattern (14 bp):
TTTAATTTTCTTAG
Found at i:11993027 original size:20 final size:20
Alignment explanation
Indices: 11993011--11993082 Score: 67
Period size: 20 Copynumber: 3.6 Consensus size: 20
11993001 ACCAAAATTT
11993011 TATTTTAAAAATTAAAAAAG
1 TATTTTAAAAATTAAAAAAG
*
11993031 TATTTTAAAAATACTTAAAAA-
1 TATTTTAAAAAT--TAAAAAAG
*** *
11993052 T-TAAAAAAAATTTAAAAAG
1 TATTTTAAAAATTAAAAAAG
11993071 TATTTTAAAAAT
1 TATTTTAAAAAT
11993083 ATTTTCAAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
18 7 0.17
19 1 0.02
20 26 0.63
21 1 0.02
22 6 0.15
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (20 bp):
TATTTTAAAAATTAAAAAAG
Found at i:11993063 original size:40 final size:40
Alignment explanation
Indices: 11993017--11993138 Score: 174
Period size: 40 Copynumber: 3.1 Consensus size: 40
11993007 ATTTTATTTT
* *
11993017 AAAAATTAAAAAAGTATTTTAAAAATACTTAAAAATTAAA
1 AAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTAAA
* *
11993057 AAAAATTTAAAAAGTATTTTAAAAATATTTTCAAATTAAA
1 AAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTAAA
* * *
11993097 AATAA-TAAAAAAATATTTTGAAAATATTTTAAAATTAAA
1 AAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTAAA
11993136 AAA
1 AAA
11993139 TAAATATATT
Statistics
Matches: 72, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 32 0.44
40 40 0.56
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (40 bp):
AAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTAAA
Found at i:11993075 original size:11 final size:10
Alignment explanation
Indices: 11993011--11993086 Score: 50
Period size: 9 Copynumber: 7.5 Consensus size: 10
11993001 ACCAAAATTT
*
11993011 TATTTTAAAA
1 TATTTAAAAA
*
11993021 -ATTAAAAAA
1 TATTTAAAAA
11993030 GTATTTTAAAAA
1 -TA-TTTAAAAA
*
11993042 TACTT-AAAA
1 TATTTAAAAA
*
11993051 -ATTAAAAAA
1 TATTTAAAAA
*
11993060 AATTTAAAAA
1 TATTTAAAAA
11993070 GTATTTTAAAAA
1 -TA-TTTAAAAA
11993082 TATTT
1 TATTT
11993087 TCAAATTAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
8 2 0.04
9 15 0.29
10 13 0.25
11 6 0.12
12 15 0.29
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (10 bp):
TATTTAAAAA
Found at i:11993087 original size:11 final size:11
Alignment explanation
Indices: 11993025--11993130 Score: 52
Period size: 11 Copynumber: 10.4 Consensus size: 11
11993015 TTAAAAATTA
11993025 AAAAAGTATTTT
1 AAAAA-TATTTT
*
11993037 AAAAATA-CTT
1 AAAAATATTTT
11993047 -AAAA-A--TT
1 AAAAATATTTT
* *
11993054 AAAAAAAATTT
1 AAAAATATTTT
11993065 AAAAAGTATTTT
1 AAAAA-TATTTT
11993077 AAAAATATTTT
1 AAAAATATTTT
*
11993088 --CAA-A--TT
1 AAAAATATTTT
* **
11993094 AAAAATAATAA
1 AAAAATATTTT
11993105 AAAAATATTTT
1 AAAAATATTTT
*
11993116 GAAAATATTTT
1 AAAAATATTTT
11993127 AAAA
1 AAAA
11993131 TTAAAAAATA
Statistics
Matches: 72, Mismatches: 12, Indels: 21
0.69 0.11 0.20
Matches are distributed among these distances:
6 2 0.03
7 2 0.03
8 8 0.11
9 8 0.11
10 2 0.03
11 36 0.50
12 14 0.19
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:11993098 original size:39 final size:39
Alignment explanation
Indices: 11993017--11993138 Score: 165
Period size: 39 Copynumber: 3.1 Consensus size: 39
11993007 ATTTTATTTT
* *
11993017 AAAAATTAAAAAAGTATTTTAAAAATACTTAAAAATTAAA
1 AAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATT-AA
* *
11993057 AAAAATTTAAAAAGTATTTTAAAAATATTTTCAAATTAA
1 AAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
* *
11993096 AAATAA-TAAAAAAATATTTTGAAAATATTTTAAAATTAA
1 AAA-AATTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
11993135 AAAA
1 AAAA
11993139 TAAATATATT
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 37 0.51
40 35 0.48
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (39 bp):
AAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
Found at i:11996793 original size:18 final size:17
Alignment explanation
Indices: 11996750--11996798 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
11996740 AAGCTTTATA
* *
11996750 TGTGTTTATTTTTTTTCT
1 TGTGTTTA-TTTTATTCG
*
11996768 TGTTTTTATGTTTATTCG
1 TGTGTTTAT-TTTATTCG
11996786 TGTGTTTATTTTA
1 TGTGTTTATTTTA
11996799 GTTTTTATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 5 0.19
18 21 0.81
ACGTcount: A:0.10, C:0.04, G:0.14, T:0.71
Consensus pattern (17 bp):
TGTGTTTATTTTATTCG
Found at i:11998938 original size:45 final size:44
Alignment explanation
Indices: 11998869--11999027 Score: 153
Period size: 45 Copynumber: 3.6 Consensus size: 44
11998859 TACACGGTGG
* * *
11998869 ATCAGCACACAAC-ACCACCCTTATAGACAATAGTACTCGGTGAA
1 ATCAGCACATAACAACCACCTTTATA-ACAATGGTACTCGGTGAA
* *
11998913 ATCAGCACATAGCAACCACCTTTATACTCAATGGTAC-CGGGTGAA
1 ATCAGCACATAACAACCACCTTTATA-ACAATGGTACTC-GGTGAA
* * *
11998958 ATCAGCACATAACAACCACCTATATAACCATTGGTA-TCCGATGAA
1 ATCAGCACATAACAACCACCTTTATAA-CAATGGTACT-CGGTGAA
* * *
11999003 ATTAGCACATAGCATCCACCTTTAT
1 ATCAGCACATAACAACCACCTTTAT
11999028 TTTCATTAAT
Statistics
Matches: 95, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
44 12 0.13
45 82 0.86
46 1 0.01
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (44 bp):
ATCAGCACATAACAACCACCTTTATAACAATGGTACTCGGTGAA
Found at i:12001783 original size:26 final size:27
Alignment explanation
Indices: 12001708--12001785 Score: 81
Period size: 26 Copynumber: 2.9 Consensus size: 27
12001698 CATAAGGGTC
12001708 TTTCACTTCATGA-TATGCCAC-AAGGCT
1 TTTC-CTTCAT-ATTATGCCACAAAGGCT
* * *
12001735 TTTCCTTCATGTTACGCTACAAAGGC-
1 TTTCCTTCATATTATGCCACAAAGGCT
*
12001761 TTTCGTTCATATTATGCCACAAAGG
1 TTTCCTTCATATTATGCCACAAAGG
12001786 TTGTCCATTC
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
26 33 0.79
27 9 0.21
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (27 bp):
TTTCCTTCATATTATGCCACAAAGGCT
Found at i:12001902 original size:54 final size:53
Alignment explanation
Indices: 12001771--12001903 Score: 153
Period size: 53 Copynumber: 2.5 Consensus size: 53
12001761 TTTCGTTCAT
* * *
12001771 ATTATGCCACAAAGG-TTGTCCATTCAAGAATCACCACAGAGGTTTTTTTTCCC
1 ATTATGCCACAAAGGCTT-TCCATTTAAGAACCACCACAGAGGTTTTCTTTCCC
* * * *
12001824 ATTATGCCACAAAGTCATTT-CATTTAAGAACCGCCATAGAGGCTTTTCTTTCTC
1 ATTATGCCACAAAGGC-TTTCCATTTAAGAACCACCACAGAGG-TTTTCTTTCCC
*
12001878 ATTATGCCATAAAGGCTTTCCATTTA
1 ATTATGCCACAAAGGCTTTCCATTTA
12001904 CTAGAGTGTT
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
53 35 0.52
54 30 0.45
55 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (53 bp):
ATTATGCCACAAAGGCTTTCCATTTAAGAACCACCACAGAGGTTTTCTTTCCC
Found at i:12016830 original size:30 final size:29
Alignment explanation
Indices: 12016796--12016855 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
12016786 ATAAAATATT
12016796 ATCATATTTCATTTACT-TTTTAAAACTTAG
1 ATCATATTTCATTT-CTATTTTAAAA-TTAG
* *
12016826 ATCATTTTTCATTTGTATTTTAAAATTAG
1 ATCATATTTCATTTCTATTTTAAAATTAG
12016855 A
1 A
12016856 AACTTGGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.52
Consensus pattern (29 bp):
ATCATATTTCATTTCTATTTTAAAATTAG
Found at i:12019400 original size:14 final size:15
Alignment explanation
Indices: 12019383--12019412 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
12019373 AATGTATGGT
12019383 TTGAAAT-TAAATAA
1 TTGAAATGTAAATAA
12019397 TTGAAATGTAAATAA
1 TTGAAATGTAAATAA
12019412 T
1 T
12019413 AAAGTGTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.37
Consensus pattern (15 bp):
TTGAAATGTAAATAA
Found at i:12025106 original size:125 final size:127
Alignment explanation
Indices: 12024790--12025310 Score: 660
Period size: 126 Copynumber: 4.1 Consensus size: 127
12024780 GGCCAAACAT
* * * * * * *
12024790 GAACTACTGTAGAAAAATAGCGTCGACATGGGAGCTTTTTTTCA-TCAATTTTGTTGACAGTTCA
1 GAACTACTGTAGAAAAAGAGCATCTACGTGGGAGCTTTTTTTAAGT-AATTTTGCTGACAGTGCA
* * * *
12024854 TCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAAATATTTTTTTAG
65 TCCTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTCAG
* * * *
12024917 GAACTACTATAGAAAAAGAGCAT-TCATGTGGGAG-TTTTTTTAAGTAATTTTGCTAATAGTGCA
1 GAACTACTGTAGAAAAAGAGCATCT-ACGTGGGAGCTTTTTTTAAGTAATTTTGCTGACAGTGCA
* * * * * * *
12024980 TCTTGCTTGAAGCGTTTTTAACATTATTTGCTCAGAAACATCTTTTC-AAATTATTTTTTCAA
65 TCCTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTCAG
* *
12025042 GAACTACTGTAGGAAAAGAGCATCTACGTGGGAGCTTTTTTT-AGTAATTTTGCCGACAGTGCAT
1 GAACTACTGTAGAAAAAGAGCATCTACGTGGGAGCTTTTTTTAAGTAATTTTGCTGACAGTGCAT
*
12025106 CCTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAATCATATTCTCAAAATTATTTTTTCAG
66 CCTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTCAG
* * * * *
12025168 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTTCAGTATTTTTACTGACAGTGCAT
1 GAACTACTGTAGAAAAAGAGCATCTACGTGGGAGCTTTTTTTAAGTAATTTTGCTGACAGTGCAT
* * *
12025232 CCTGGTTGAAGCGTTTTTCACATTATTTGTTCA-AAATCGTATTCTCAAAATTATTTTTTCAG
66 CCTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAA-CATATTCTCAAAATTATTTTTTCAG
*
12025294 GAATTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
12025311 AACAAAATCC
Statistics
Matches: 343, Mismatches: 44, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
125 107 0.31
126 208 0.61
127 28 0.08
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (127 bp):
GAACTACTGTAGAAAAAGAGCATCTACGTGGGAGCTTTTTTTAAGTAATTTTGCTGACAGTGCAT
CCTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTCAG
Found at i:12025243 original size:251 final size:253
Alignment explanation
Indices: 12024790--12025310 Score: 708
Period size: 251 Copynumber: 2.1 Consensus size: 253
12024780 GGCCAAACAT
* * ** *
12024790 GAACTACTGTAGAAAAATAGCGTCGACATGGGAGCTTTTTTTCATCAATTTTGTTGACAGTTCAT
1 GAACTACTGTAGAAAAAGAGCATCGACATGGGAGCTTTTTTTCATCAATTTTGCCGACAGTGCAT
* * *
12024855 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAAATATTTTTTTAGGAA
66 CCTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAACATATTCTCAAAAATATTTTTTCAGGAA
* * * * * *
12024920 CTACTATAGAAAAAGAGCATTCATGTGGGAGTTTTTTTAAGTAATTTTGCTAATAGTGCATCTTG
131 CTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTAAGTAATTTTACTAACAGTGCATCCTG
* *
12024985 CTTGAAGCGTTTTTAACATTATTTGCTCAGAAA-CATCTTTTC-AAATTATTTTTTCAA
196 CTTGAAGCGTTTTTAACATTATTTGCTCA-AAATCATATTCTCAAAATTATTTTTTCAA
* * *
12025042 GAACTACTGTAGGAAAAGAGCATCTACGTGGGAGCTTTTTTT-AGT-AATTTTGCCGACAGTGCA
1 GAACTACTGTAGAAAAAGAGCATCGACATGGGAGCTTTTTTTCA-TCAATTTTGCCGACAGTGCA
* *
12025105 TCCTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAATCATATTCTCAAAATTATTTTTTCAGGA
65 TCCTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAACATATTCTCAAAAATATTTTTTCAGGA
* * * * *
12025170 ACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTATTTTTACTGACAGTGCATCCT
130 ACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTAAGTAATTTTACTAACAGTGCATCCT
* * * * *
12025235 GGTTGAAGCGTTTTTCACATTATTTGTTCAAAATCGTATTCTCAAAATTATTTTTTCAG
195 GCTTGAAGCGTTTTTAACATTATTTGCTCAAAATCATATTCTCAAAATTATTTTTTCAA
*
12025294 GAATTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
12025311 AACAAAATCC
Statistics
Matches: 233, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
250 3 0.01
251 163 0.70
252 67 0.29
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (253 bp):
GAACTACTGTAGAAAAAGAGCATCGACATGGGAGCTTTTTTTCATCAATTTTGCCGACAGTGCAT
CCTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAACATATTCTCAAAAATATTTTTTCAGGAA
CTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTAAGTAATTTTACTAACAGTGCATCCTG
CTTGAAGCGTTTTTAACATTATTTGCTCAAAATCATATTCTCAAAATTATTTTTTCAA
Found at i:12025491 original size:7 final size:7
Alignment explanation
Indices: 12025481--12025512 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
12025471 TAAAATTCCT
12025481 AAAACCC
1 AAAACCC
12025488 AAAACCC
1 AAAACCC
12025495 AAAACCC
1 AAAACCC
12025502 AAAACCC
1 AAAACCC
12025509 AAAA
1 AAAA
12025513 TTATTTTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.62, C:0.38, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAACCC
Found at i:12026105 original size:115 final size:110
Alignment explanation
Indices: 12025870--12026116 Score: 334
Period size: 110 Copynumber: 2.2 Consensus size: 110
12025860 TAGTCGGTTC
* *
12025870 ACTTATTATTTATTTGATTTTGTGATTTTAGAAGGAGAGAAGGCAACAATAAATTTTATTTTAAA
1 ACTTATTATTTGTTTGATTTTGTGATTTTAGAAGGAGAGAAGGCAACAACAAATTTTATTTTAAA
* * *
12025935 GGTAATTTTTTGTAATTGTTATTTATTTGTTTAGGGTTTTGTGGT
66 GGTAATTTTTTATAATTATTATTTATTTGTTTAGGATTTTGTGGT
* * * *
12025980 ACTTATTATTTGTTTAATTTTGTGATTTTGGAAGGAGAGGAGGCAACAACAAATTTTGTTTTAAA
1 ACTTATTATTTGTTTGATTTTGTGATTTTAGAAGGAGAGAAGGCAACAACAAATTTTATTTTAAA
12026045 GGTAATTTTTTTATTTATAATTATTATTTATTTGTTTAGGATTTTG-GGTT
66 GGTAA----TTT-TTTATAATTATTATTTATTTGTTTAGGATTTTGTGG-T
**
12026095 TGTTATTATTTGTTTGATTTTG
1 ACTTATTATTTGTTTGATTTTG
12026117 ACTTTTTTAC
Statistics
Matches: 119, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
110 64 0.54
114 5 0.04
115 50 0.42
ACGTcount: A:0.27, C:0.03, G:0.19, T:0.52
Consensus pattern (110 bp):
ACTTATTATTTGTTTGATTTTGTGATTTTAGAAGGAGAGAAGGCAACAACAAATTTTATTTTAAA
GGTAATTTTTTATAATTATTATTTATTTGTTTAGGATTTTGTGGT
Found at i:12029909 original size:24 final size:25
Alignment explanation
Indices: 12029808--12029984 Score: 96
Period size: 25 Copynumber: 7.2 Consensus size: 25
12029798 AAAATCTTCC
* **
12029808 GAGCCATATAA-CGAGAAGCTCATGT
1 GAGCCA-ATAATCGGGAAGCTCATAA
*
12029833 GAGCCATGTAA-CGGGAAGCTCATAA
1 GAGCCA-ATAATCGGGAAGCTCATAA
* ** **
12029858 GAGCC-ATATTCGATAAGCTCATGC
1 GAGCCAATAATCGGGAAGCTCATAA
* *
12029882 GAGCCAAT-ATCGGGTAGCT-TTCAA
1 GAGCCAATAATCGGGAAGCTCAT-AA
*
12029906 GAGCCATTAATCGGGAAGCTCATAA
1 GAGCCAATAATCGGGAAGCTCATAA
* * * ***
12029931 GAGCCAATTATCAGAAAGCTCCGGA
1 GAGCCAATAATCGGGAAGCTCATAA
* *
12029956 GAACCAATTATCGGGACA-CTCATAA
1 GAGCCAATAATCGGGA-AGCTCATAA
12029981 GAGC
1 GAGC
12029985 TGTGGTGTAT
Statistics
Matches: 112, Mismatches: 34, Indels: 12
0.71 0.22 0.08
Matches are distributed among these distances:
23 3 0.03
24 29 0.26
25 78 0.70
26 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (25 bp):
GAGCCAATAATCGGGAAGCTCATAA
Found at i:12029932 original size:25 final size:25
Alignment explanation
Indices: 12029808--12029936 Score: 97
Period size: 25 Copynumber: 5.2 Consensus size: 25
12029798 AAAATCTTCC
* **
12029808 GAGCCATATAA-CGAGAAGCTCATGT
1 GAGCCAT-TAATCGGGAAGCTCATAA
12029833 GAGCCATGTAA-CGGGAAGCTCATAA
1 GAGCCAT-TAATCGGGAAGCTCATAA
* ** **
12029858 GAGCCA-TATTCGATAAGCTCATGC
1 GAGCCATTAATCGGGAAGCTCATAA
* * *
12029882 GAGCCAAT-ATCGGGTAGCT-TTCAA
1 GAGCCATTAATCGGGAAGCTCAT-AA
12029906 GAGCCATTAATCGGGAAGCTCATAA
1 GAGCCATTAATCGGGAAGCTCATAA
12029931 GAGCCA
1 GAGCCA
12029937 ATTATCAGAA
Statistics
Matches: 80, Mismatches: 19, Indels: 10
0.73 0.17 0.09
Matches are distributed among these distances:
23 3 0.04
24 30 0.38
25 46 0.57
26 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (25 bp):
GAGCCATTAATCGGGAAGCTCATAA
Found at i:12037530 original size:25 final size:25
Alignment explanation
Indices: 12037502--12037697 Score: 127
Period size: 25 Copynumber: 7.8 Consensus size: 25
12037492 AAGCTCTTCC
*
12037502 GAGCCATATAACGGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATGA
* ** *
12037527 GAGCCATGTAACTAGAAGCTCATGC
1 GAGCCATATAACGGGAAGCTCATGA
* * *
12037552 GAGCCATAT-TCGAGAAGCTCATGC
1 GAGCCATATAACGGGAAGCTCATGA
* *
12037576 GAGCCAT-TAATTGGGAAGCTCATAA
1 GAGCCATATAA-CGGGAAGCTCATGA
* *
12037601 AAGCCAT-TAATCGGGAAGCTCATAA
1 GAGCCATATAA-CGGGAAGCTCATGA
* *
12037626 GAGCCA-ATTATCGGGAAGCTC-CGAA
1 GAGCCATA-TAACGGGAAGCTCATG-A
* *
12037651 GAGCCA-ATTATCGGGAATGCTCATAA
1 GAGCCATA-TAACGGGAA-GCTCATGA
*
12037677 GAGCACATA-AACGGAAAGCTC
1 GAGC-CATATAACGGGAAGCTC
12037698 TTTCAAGCCA
Statistics
Matches: 140, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
23 1 0.01
24 20 0.14
25 99 0.71
26 17 0.12
27 2 0.01
28 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATGA
Found at i:12037572 original size:24 final size:25
Alignment explanation
Indices: 12037492--12037582 Score: 112
Period size: 25 Copynumber: 3.7 Consensus size: 25
12037482 CATAAACGGA
* * *
12037492 AAGCTCTTCCGAGCCATATAACGGG
1 AAGCTCATGCGAGCCATATAACGAG
* * *
12037517 AAGCTCATGTGAGCCATGTAACTAG
1 AAGCTCATGCGAGCCATATAACGAG
*
12037542 AAGCTCATGCGAGCCATAT-TCGAG
1 AAGCTCATGCGAGCCATATAACGAG
12037566 AAGCTCATGCGAGCCAT
1 AAGCTCATGCGAGCCAT
12037583 TAATTGGGAA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
24 20 0.36
25 36 0.64
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (25 bp):
AAGCTCATGCGAGCCATATAACGAG
Found at i:12037631 original size:50 final size:50
Alignment explanation
Indices: 12037502--12037680 Score: 152
Period size: 50 Copynumber: 3.6 Consensus size: 50
12037492 AAGCTCTTCC
** * * **
12037502 GAGCCATATAA-CGGGAAGCTCATGTGAGCCATGTAACT-AGAAGCTCATGC
1 GAGCCAT-TAATCGGGAAGCTCATAAGAGCCAT-TAATTGGGAAGCTCATAA
* * **
12037552 GAGCCA-TATTCGAGAAGCTCATGCGAGCCATTAATTGGGAAGCTCATAA
1 GAGCCATTAATCGGGAAGCTCATAAGAGCCATTAATTGGGAAGCTCATAA
* * **
12037601 AAGCCATTAATCGGGAAGCTCATAAGAGCCAATT-ATCGGGAAGCTCCGAA
1 GAGCCATTAATCGGGAAGCTCATAAGAGCC-ATTAATTGGGAAGCTCATAA
12037651 GAGCCAATT-ATCGGGAATGCTCATAAGAGC
1 GAGCC-ATTAATCGGGAA-GCTCATAAGAGC
12037681 ACATAAACGG
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
48 6 0.06
49 33 0.31
50 50 0.47
51 18 0.17
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (50 bp):
GAGCCATTAATCGGGAAGCTCATAAGAGCCATTAATTGGGAAGCTCATAA
Found at i:12037696 original size:51 final size:50
Alignment explanation
Indices: 12037602--12037697 Score: 124
Period size: 51 Copynumber: 1.9 Consensus size: 50
12037592 AGCTCATAAA
* * *
12037602 AGCCATTAATCGGGAAGCTCATAAGAGCCAATTATCGGGAAGCTCCGAAG
1 AGCCATTAATCGGGAAGCTCATAAGAGCCAATAAACGGAAAGCTCCGAAG
12037652 AGCCAATT-ATCGGGAATGCTCATAAGAG-CACATAAACGGAAAGCTC
1 AGCC-ATTAATCGGGAA-GCTCATAAGAGCCA-ATAAACGGAAAGCTC
12037698 TTTCAAGCCA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
50 14 0.35
51 26 0.65
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (50 bp):
AGCCATTAATCGGGAAGCTCATAAGAGCCAATAAACGGAAAGCTCCGAAG
Found at i:12037833 original size:25 final size:24
Alignment explanation
Indices: 12037805--12037977 Score: 120
Period size: 25 Copynumber: 7.0 Consensus size: 24
12037795 CTCTTCCAAC
**
12037805 CCATATAACGGGAAGCTCATGTGAG
1 CCATAT-ACGGGAAGCTCATAAGAG
12037830 CCATGCA-ACGGGAAGCTCATAAGAG
1 CCAT--ATACGGGAAGCTCATAAGAG
*
12037855 CCATATTCGGGAAGCTCATAAGAG
1 CCATATACGGGAAGCTCATAAGAG
* **
12037879 CCATATTCGGGAAGCTCATGCGAG
1 CCATATACGGGAAGCTCATAAGAG
* ** ***
12037903 CTA-ATATCGGGTGGCTCCGGAGAG
1 CCATATA-CGGGAAGCTCATAAGAG
*
12037927 CCAT-TAATCGAGAAGCTCATAAGAG
1 CCATAT-A-CGGGAAGCTCATAAGAG
*
12037952 CCA-ATTATCGGGACGCTCATAAGAG
1 CCATA-TA-CGGGAAGCTCATAAGAG
12037977 C
1 C
12037978 TGTGGTGTAT
Statistics
Matches: 119, Mismatches: 21, Indels: 16
0.76 0.13 0.10
Matches are distributed among these distances:
23 3 0.03
24 56 0.47
25 58 0.49
26 1 0.01
27 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.19
Consensus pattern (24 bp):
CCATATACGGGAAGCTCATAAGAG
Found at i:12037870 original size:24 final size:24
Alignment explanation
Indices: 12037838--12037977 Score: 131
Period size: 24 Copynumber: 5.8 Consensus size: 24
12037828 AGCCATGCAA
12037838 CGGGAAGCTCATAAGAGCCATATT
1 CGGGAAGCTCATAAGAGCCATATT
12037862 CGGGAAGCTCATAAGAGCCATATT
1 CGGGAAGCTCATAAGAGCCATATT
** *
12037886 CGGGAAGCTCATGCGAGCTA-ATAT
1 CGGGAAGCTCATAAGAGCCATAT-T
** *** *
12037910 CGGGTGGCTCCGGAGAGCCATTAAT
1 CGGGAAGCTCATAAGAGCCA-TATT
*
12037935 CGAGAAGCTCATAAGAGCCA-ATTAT
1 CGGGAAGCTCATAAGAGCCATA-T-T
*
12037960 CGGGACGCTCATAAGAGC
1 CGGGAAGCTCATAAGAGC
12037978 TGTGGTGTAT
Statistics
Matches: 92, Mismatches: 19, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
23 3 0.03
24 56 0.61
25 32 0.35
26 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (24 bp):
CGGGAAGCTCATAAGAGCCATATT
Found at i:12037913 original size:48 final size:48
Alignment explanation
Indices: 12037813--12037977 Score: 145
Period size: 49 Copynumber: 3.4 Consensus size: 48
12037803 ACCCATATAA
** * *
12037813 CGGGAAGCTCATGTGAGCCATGCAA-CGGGAAGCTCATAAGAGCCATATT
1 CGGGAAGCTCATAAGAGCCAT-TAATCGGGAAGCTCATAAGAGCAATA-T
* **
12037862 CGGGAAGCTCATAAGAGCCA-TATTCGGGAAGCTCATGCGAGCTAATAT
1 CGGGAAGCTCATAAGAGCCATTAATCGGGAAGCTCATAAGAGC-AATAT
** *** *
12037910 CGGGTGGCTCCGGAGAGCCATTAATCGAGAAGCTCATAAGAGCCAATTAT
1 CGGGAAGCTCATAAGAGCCATTAATCGGGAAGCTCATAAGAG-CAA-TAT
*
12037960 CGGGACGCTCATAAGAGC
1 CGGGAAGCTCATAAGAGC
12037978 TGTGGTGTAT
Statistics
Matches: 90, Mismatches: 21, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
47 1 0.01
48 32 0.36
49 40 0.44
50 17 0.19
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.19
Consensus pattern (48 bp):
CGGGAAGCTCATAAGAGCCATTAATCGGGAAGCTCATAAGAGCAATAT
Found at i:12038155 original size:24 final size:24
Alignment explanation
Indices: 12038017--12038157 Score: 99
Period size: 24 Copynumber: 5.8 Consensus size: 24
12038007 ACAACAAAAT
*
12038017 CGGGATGCTCATT-AGAGCTAGTAA
1 CGGGATGCTC-TTGAGAGCTAATAA
* * * * *
12038041 TGGGAAGCTCGTGAGAGCCATATAT
1 CGGGATGCTCTTGAGAGCTA-ATAA
* ** * *
12038066 CGAG-TAGCTCAAGAGAGCAAATAT
1 CGGGAT-GCTCTTGAGAGCTAATAA
* *
12038090 CGAGATGCTCATGAGAGCTAATAA
1 CGGGATGCTCTTGAGAGCTAATAA
12038114 CGGGATGCT-TATGAGAGCTAATAA
1 CGGGATGCTCT-TGAGAGCTAATAA
*
12038138 CGGGATGCTCTTGCGAGCTA
1 CGGGATGCTCTTGAGAGCTA
12038158 TGGTGTGTTT
Statistics
Matches: 93, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
23 1 0.01
24 75 0.81
25 17 0.18
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (24 bp):
CGGGATGCTCTTGAGAGCTAATAA
Found at i:12039424 original size:16 final size:17
Alignment explanation
Indices: 12039403--12039435 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
12039393 AAACACGATG
*
12039403 GAAAAATATCA-AAGAA
1 GAAAAAAATCAGAAGAA
12039419 GAAAAAAATCAGAAGAA
1 GAAAAAAATCAGAAGAA
12039436 AATTGTAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.70, C:0.06, G:0.15, T:0.09
Consensus pattern (17 bp):
GAAAAAAATCAGAAGAA
Found at i:12045898 original size:16 final size:15
Alignment explanation
Indices: 12045876--12045917 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
12045866 AGGGAGAGAA
12045876 TAGAAGAAAAAAATG
1 TAGAAGAAAAAAATG
*
12045891 T--AAGAAGAAAATTG
1 TAGAAGAA-AAAAATG
12045905 TAGAAGAAAAAAA
1 TAGAAGAAAAAAA
12045918 GAACATGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
13 5 0.23
14 7 0.32
15 5 0.23
16 5 0.23
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (15 bp):
TAGAAGAAAAAAATG
Found at i:12047795 original size:26 final size:26
Alignment explanation
Indices: 12047736--12047795 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
12047726 TTTTCTTTTC
** *
12047736 TTTTTCTTTTCATTTTTAGTTTAGGT
1 TTTTTCTTTTCATTTTTAGAGTAGAT
*
12047762 TTTCTCTTTTC-TTTTTAGAGTAGAT
1 TTTTTCTTTTCATTTTTAGAGTAGAT
12047787 TTTATTCTT
1 TTT-TTCTT
12047796 GTAGTTTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.13, C:0.10, G:0.10, T:0.67
Consensus pattern (26 bp):
TTTTTCTTTTCATTTTTAGAGTAGAT
Found at i:12048233 original size:42 final size:42
Alignment explanation
Indices: 12048165--12048267 Score: 154
Period size: 42 Copynumber: 2.5 Consensus size: 42
12048155 GTATATATGC
* *
12048165 CTAGG-TGAGACGGAGAGGTAACCTTAGGTGGTATCTTTTAGT
1 CTAGGATGAGACTGAGAGGT-ATCTTAGGTGGTATCTTTTAGT
* *
12048207 CTAGGATGAGGCTGGGAGGTATCTTAGGTGGTATCTTTTAGT
1 CTAGGATGAGACTGAGAGGTATCTTAGGTGGTATCTTTTAGT
12048249 CTAGGATGAGACTGAGAGG
1 CTAGGATGAGACTGAGAGG
12048268 AGGTTCCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 43 0.80
43 11 0.20
ACGTcount: A:0.23, C:0.11, G:0.36, T:0.30
Consensus pattern (42 bp):
CTAGGATGAGACTGAGAGGTATCTTAGGTGGTATCTTTTAGT
Found at i:12079847 original size:31 final size:31
Alignment explanation
Indices: 12079809--12079867 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
12079799 GTTACTGAAC
12079809 TATTCGAAAGTGTTCATTTAAGTCACTAAAT
1 TATTCGAAAGTGTTCATTTAAGTCACTAAAT
* * *
12079840 TATTCGAAAGTTTTTATTTAAGTTACTA
1 TATTCGAAAGTGTTCATTTAAGTCACTA
12079868 GGCTGTTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (31 bp):
TATTCGAAAGTGTTCATTTAAGTCACTAAAT
Found at i:12080102 original size:6 final size:6
Alignment explanation
Indices: 12080091--12080116 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
12080081 ATGAATTGTA
12080091 AAAGAG AAAGAG AAAGAG AAAGAG AA
1 AAAGAG AAAGAG AAAGAG AAAGAG AA
12080117 CTTTCGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (6 bp):
AAAGAG
Found at i:12081858 original size:39 final size:39
Alignment explanation
Indices: 12081775--12081866 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 39
12081765 AGCAGCATTT
*
12081775 TTAGCGGCGTTTGGATAAAAAATGCCGCTAAAGATCGATCA
1 TTAGCGGCGTTT-GATAAAAAATGCCGCTAAAGATAGA-CA
12081816 TTAGCGGCGCTTT-ATAAAAAATGCCGCTGAAA-ATAAGA-A
1 TTAGCGGCG-TTTGATAAAAAATGCCGCT-AAAGAT-AGACA
12081855 TTAGCGGCGTTT
1 TTAGCGGCGTTT
12081867 TCCAAAAAGC
Statistics
Matches: 47, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
38 3 0.06
39 10 0.21
40 17 0.36
41 14 0.30
42 3 0.06
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (39 bp):
TTAGCGGCGTTTGATAAAAAATGCCGCTAAAGATAGACA
Found at i:12082058 original size:114 final size:113
Alignment explanation
Indices: 12081855--12082182 Score: 435
Period size: 114 Copynumber: 2.9 Consensus size: 113
12081845 AAAATAAGAA
*** * * *
12081855 TTAGCGGCGTTTTCCAAAAAGCGCCGC-AAAAAACTAAGCCCAATGGCGCCGTGTTCCAAGCTTT
1 TTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACTAAGCCCAACGGCGCCGTTTTCTAAGCTTT
* * *
12081919 CGGGGATTTAGTGGCGTTTTGAAGAAAGCGCCGCTAATGCTCAGGGCT
66 CGGGGATTTAGAGGCGTTTTTAAGAAAGCGCCGCTAATGCCCAGGGCT
* * *
12081967 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCGTTTTCTAAGATT
1 TTAGCGGCGTTTTTGGAAAAGCGCCGC-AAAAAAACTAAGCCCAACGGCGCCGTTTTCTAAGCTT
* *
12082032 TCAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCCCAGGGCT
65 TCGGGGATTTAGAGGCGTTTTTAAGAAAGCGCCGCTAATGCCCAGGGCT
* * * *
12082081 TTAGTGGCGTTTTTGGAAAAGCGCCGCAAAAAAACTATGCCCAACGGCGCTG-TTTCTTGAGCTT
1 TTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACTAAGCCCAACGGCGCCGTTTTC-TAAGCTT
** *
12082145 TCGGGGATTTAGAGGCGTTTTTGGGAAAGCTCCGCTAA
65 TCGGGGATTTAGAGGCGTTTTTAAGAAAGCGCCGCTAA
12082183 AAAAAAACTA
Statistics
Matches: 188, Mismatches: 25, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
112 27 0.14
113 60 0.32
114 101 0.54
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (113 bp):
TTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACTAAGCCCAACGGCGCCGTTTTCTAAGCTTT
CGGGGATTTAGAGGCGTTTTTAAGAAAGCGCCGCTAATGCCCAGGGCT
Found at i:12082549 original size:73 final size:71
Alignment explanation
Indices: 12082412--12082555 Score: 225
Period size: 73 Copynumber: 2.0 Consensus size: 71
12082402 NNNNNNNNNA
* * **
12082412 AAAAAAAACTAAGCCCAACGGCGCCGTTTCTGAGCTTTGGGGATTTAGCGGTGTTTTTGGGAAAG
1 AAAAAAAACTAAGCCCAACGGCGCCGTTTCTGAACTTTGGGGATTTAGCGGCGTTTTTAAGAAAG
12082477 CGCCGC
66 CGCCGC
12082483 AAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAACTTTCGGGGATTTAGCGGCGTTTTTAAGAA
1 AAAAAAAACTAAGCCCAACGGCGCCG-TTTCTGAACTTT-GGGGATTTAGCGGCGTTTTTAAGAA
*
12082548 AGTGCCGC
64 AGCGCCGC
12082556 TAATGCTCAG
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
71 26 0.39
72 11 0.17
73 29 0.44
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (71 bp):
AAAAAAAACTAAGCCCAACGGCGCCGTTTCTGAACTTTGGGGATTTAGCGGCGTTTTTAAGAAAG
CGCCGC
Found at i:12082659 original size:113 final size:114
Alignment explanation
Indices: 12082451--12082685 Score: 382
Period size: 113 Copynumber: 2.1 Consensus size: 114
12082441 CTGAGCTTTG
* *
12082451 GGGATTTAGCGGTGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTG
1 GGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACAAAGCCCAACGGCGCCGTTTTCTG
* **
12082516 AACTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGTGCCGCTAATGCTCA
66 AACTTTCGGGGATTTAGCGGCGTTTGTAAGAAAGCCCCGCTAATGCTCA
* *
12082565 GGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAA-AAAGCCCAACGGCGCTGTTTTCTG
1 GGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACAAAGCCCAACGGCGCCGTTTTCTG
* *
12082629 AGCTTTCGGGGATTTATCGGCGTTTGTAAGAAAGCCCCGCTAATGCTCA
66 AACTTTCGGGGATTTAGCGGCGTTTGTAAGAAAGCCCCGCTAATGCTCA
12082678 GGGATTTA
1 GGGATTTA
12082686 AAATAATTTA
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
113 73 0.66
114 38 0.34
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (114 bp):
GGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACAAAGCCCAACGGCGCCGTTTTCTG
AACTTTCGGGGATTTAGCGGCGTTTGTAAGAAAGCCCCGCTAATGCTCA
Done.