Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 48 of 150
Found at i:13728606 original size:15 final size:15
Alignment explanation
Indices: 13728588--13728644 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
13728578 ATTCAATATT
13728588 AATATTTTAATAATA
1 AATATTTTAATAATA
*
13728603 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
13728622 AATATATTAATAATA
1 AATATTTTAATAATA
*
13728637 AATGTTTT
1 AATATTTT
13728645 GTAGTAGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:13731123 original size:26 final size:26
Alignment explanation
Indices: 13731087--13731148 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
13731077 CCTGTAAGTG
*
13731087 TTCTAAAACTGATACATGCTATGATA
1 TTCTGAAACTGATACATGCTATGATA
* **
13731113 TTCTGAAACTGATATATTTTATGATA
1 TTCTGAAACTGATACATGCTATGATA
13731139 TTCTGAAACT
1 TTCTGAAACT
13731149 ACTGTAGATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.40
Consensus pattern (26 bp):
TTCTGAAACTGATACATGCTATGATA
Found at i:13741430 original size:15 final size:15
Alignment explanation
Indices: 13741410--13741441 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
13741400 CCCAATTTCG
13741410 GCACAAGTAGATGCT
1 GCACAAGTAGATGCT
13741425 GCACAAGTAGATGCT
1 GCACAAGTAGATGCT
13741440 GC
1 GC
13741442 CCAAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (15 bp):
GCACAAGTAGATGCT
Found at i:13742877 original size:7 final size:7
Alignment explanation
Indices: 13742865--13742904 Score: 64
Period size: 7 Copynumber: 5.9 Consensus size: 7
13742855 ACATTACTAA
13742865 TTTATTC
1 TTTATTC
13742872 TTTATTC
1 TTTATTC
*
13742879 TTTATTT
1 TTTATTC
13742886 TTTATT-
1 TTTATTC
13742892 TTTATTC
1 TTTATTC
13742899 TTTATT
1 TTTATT
13742905 TGTGATTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 6 0.19
7 25 0.81
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTATTC
Found at i:13742897 original size:20 final size:21
Alignment explanation
Indices: 13742865--13742905 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
13742855 ACATTACTAA
13742865 TTTATTCTTTATTCTTTATTT
1 TTTATTCTTTATTCTTTATTT
13742886 TTTATT-TTTATTCTTTATTT
1 TTTATTCTTTATTCTTTATTT
13742906 GTGATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTATTCTTTATTCTTTATTT
Found at i:13742912 original size:20 final size:20
Alignment explanation
Indices: 13742872--13742912 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
13742862 TAATTTATTC
* *
13742872 TTTATTCTTTATTTTTTATT
1 TTTATTCTTTATTTGTGATT
13742892 TTTATTCTTTATTTGTGATT
1 TTTATTCTTTATTTGTGATT
13742912 T
1 T
13742913 ATTTATCAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.76
Consensus pattern (20 bp):
TTTATTCTTTATTTGTGATT
Found at i:13742912 original size:27 final size:28
Alignment explanation
Indices: 13742865--13742918 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
13742855 ACATTACTAA
*
13742865 TTTATTCTTTATTCTTTATTT-TTTATT
1 TTTATTCTTTATTCTTGATTTATTTATT
13742892 TTTATTCTTTATT-TGTGATTTATTTAT
1 TTTATTCTTTATTCT-TGATTTATTTAT
13742919 CAGGTGTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 1 0.04
27 18 0.75
28 5 0.21
ACGTcount: A:0.17, C:0.06, G:0.04, T:0.74
Consensus pattern (28 bp):
TTTATTCTTTATTCTTGATTTATTTATT
Found at i:13744567 original size:25 final size:25
Alignment explanation
Indices: 13744516--13744567 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
13744506 ACTAGTAAAA
*
13744516 TTATCTCCTCAAAAAACTTGTAGAT
1 TTATCTCCTCAAAAAACTTGTACAT
* *
13744541 TTATCTCCTCAAAAAAGTTGTCCAT
1 TTATCTCCTCAAAAAACTTGTACAT
13744566 TT
1 TT
13744568 CAACCTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (25 bp):
TTATCTCCTCAAAAAACTTGTACAT
Found at i:13745424 original size:46 final size:45
Alignment explanation
Indices: 13745354--13745448 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 45
13745344 TATTAAATTT
13745354 TTGAAAAATAGCCATAAAACATGTCGAAAAACACGATACTATGAA
1 TTGAAAAATAGCCATAAAACATGTCGAAAAACACGATACTATGAA
13745399 TTGAGAAAATAGCCATAAAACATGTCGAAAAACACGATACTATGAA
1 TTGA-AAAATAGCCATAAAACATGTCGAAAAACACGATACTATGAA
13745445 TTGA
1 TTGA
13745449 TTATTTTATT
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 4 0.08
46 45 0.92
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.21
Consensus pattern (45 bp):
TTGAAAAATAGCCATAAAACATGTCGAAAAACACGATACTATGAA
Found at i:13749575 original size:5 final size:5
Alignment explanation
Indices: 13749561--13749591 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
13749551 GCATTGGAAC
13749561 TTTTA TTTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA
13749592 CTTGGTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:13750443 original size:15 final size:16
Alignment explanation
Indices: 13750425--13750455 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13750415 ATAAAATGGT
13750425 TACC-AAAAAAAGGTG
1 TACCAAAAAAAAGGTG
13750440 TACCAAAAAAAAGGTG
1 TACCAAAAAAAAGGTG
13750456 GAATCACGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.55, C:0.13, G:0.19, T:0.13
Consensus pattern (16 bp):
TACCAAAAAAAAGGTG
Found at i:13752642 original size:101 final size:102
Alignment explanation
Indices: 13752522--13752706 Score: 313
Period size: 101 Copynumber: 1.8 Consensus size: 102
13752512 AAAGTGATGG
*
13752522 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-CTAGA-A-TGATAGGTCGCATGTGTAG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-AGATAGTGAT-GGTCACATGTGTAG
13752584 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
64 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
*
13752623 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGTGATGGTCACATGTGTAGTA
13752688 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
13752707 TGAACCGGTA
Statistics
Matches: 79, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
101 39 0.49
102 36 0.46
103 4 0.05
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGTGATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:13752652 original size:51 final size:49
Alignment explanation
Indices: 13752519--13752714 Score: 223
Period size: 51 Copynumber: 3.9 Consensus size: 49
13752509 GTGAAAGTGA
* **
13752519 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTAGA-ATGAT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-G-T
* * * *
13752569 AGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-T
* * *
13752619 TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGT
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT
* *
13752669 GATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCGG
1 --TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
13752715 TATCATTAAT
Statistics
Matches: 122, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
50 41 0.34
51 80 0.66
52 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT
Found at i:13752708 original size:26 final size:26
Alignment explanation
Indices: 13752628--13752708 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
13752618 TTCGATCACG
13752628 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
13752654 CGTGTA-T-CGGATAGTG-ATGG-TCAC-A
1 TGTGTAGTAC-TAT-GTGCA-GGCT-ACTA
13752679 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
13752705 TGTG
1 TGTG
13752709 AACCGGTATC
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:13752801 original size:46 final size:43
Alignment explanation
Indices: 13752710--13752794 Score: 116
Period size: 46 Copynumber: 1.9 Consensus size: 43
13752700 TACTATGTGA
*
13752710 ACCGGTATCATTAATTATAAGGTGGTTGTTATGTGCTGATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGTTATGTGCTGATCCC
* *
13752753 ACCGGATATCATTGATTACAAAGGGTGGTTGTTGTGTGCTGA
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGTTATGTGCTGA
13752795 ATCCACCATG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 5 0.14
44 11 0.31
45 2 0.06
46 18 0.50
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGTTATGTGCTGATCCC
Found at i:13752953 original size:16 final size:16
Alignment explanation
Indices: 13752932--13752963 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13752922 TGATTGAAAG
*
13752932 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
13752948 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
13752964 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:13756495 original size:19 final size:18
Alignment explanation
Indices: 13756448--13756494 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
13756438 ATTTTAAAAT
13756448 TTTTATTTTTAACT-TTAA
1 TTTTATTTTTAA-TGTTAA
13756466 TTTCTATTTTTAATGTTAA
1 TTT-TATTTTTAATGTTAA
13756485 TTTTATTTTT
1 TTTTATTTTT
13756495 TTATGTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTTATTTTTAATGTTAA
Found at i:13756504 original size:20 final size:20
Alignment explanation
Indices: 13756445--13756505 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 20
13756435 TTAATTTTAA
* *
13756445 AATTTTTATTTTTAA-CTTT
1 AATTTCTATTTTTAATGTTT
13756464 AATTTCTATTTTTAATG-TT
1 AATTTCTATTTTTAATGTTT
*
13756483 AATTT-TATTTTTTTATGTTT
1 AATTTCTA-TTTTTAATGTTT
13756503 AAT
1 AAT
13756506 AAGGGGGTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
18 2 0.06
19 29 0.81
20 5 0.14
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.67
Consensus pattern (20 bp):
AATTTCTATTTTTAATGTTT
Found at i:13759289 original size:22 final size:23
Alignment explanation
Indices: 13759249--13759299 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
13759239 AAAAGAAGAA
**
13759249 TCAAAGAACAAAGCTAAGTTT-C
1 TCAAAGAACAAAGAAAAGTTTGC
13759271 TTCAAAG-ACAAAGAAAAGTTTGC
1 -TCAAAGAACAAAGAAAAGTTTGC
13759294 TCAAAG
1 TCAAAG
13759300 TCTAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.22
Consensus pattern (23 bp):
TCAAAGAACAAAGAAAAGTTTGC
Found at i:13763068 original size:5 final size:5
Alignment explanation
Indices: 13763060--13763088 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
13763050 GATGGTATGG
13763060 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
13763089 TTAAATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:13766833 original size:19 final size:19
Alignment explanation
Indices: 13766798--13766842 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
13766788 CCCAATCTCC
*
13766798 AAAATAATTAAACAGCCTA
1 AAAATAATTAAACAGCCCA
*
13766817 AAAATGAATTACA-AGCCCA
1 AAAAT-AATTAAACAGCCCA
13766836 AAAATAA
1 AAAATAA
13766843 GAAAAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 15 0.65
20 6 0.26
ACGTcount: A:0.60, C:0.16, G:0.07, T:0.18
Consensus pattern (19 bp):
AAAATAATTAAACAGCCCA
Found at i:13769401 original size:16 final size:16
Alignment explanation
Indices: 13769380--13769412 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
13769370 TTCGCTGTAT
*
13769380 TGGAATAGGGGCGTAA
1 TGGAATAGAGGCGTAA
13769396 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
13769412 T
1 T
13769413 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.06, G:0.39, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:13769487 original size:44 final size:45
Alignment explanation
Indices: 13769394--13769488 Score: 131
Period size: 44 Copynumber: 2.1 Consensus size: 45
13769384 ATAGGGGCGT
*
13769394 AATGGAATAGAGGCGTAATAGCAAATCAATTGTTTGGTTGAATGT
1 AATGGAATAGAGGCGTAATAGCAAATCAATTGTTTGGTTGAATGG
* * *
13769439 AATGGAATAGAGGCGTAATAG-TATTC-TTGTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGCAAATCAAT-TGTTTGGTTGAATGG
13769483 AATGGA
1 AATGGA
13769489 GGTGTAATAG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.51
45 21 0.47
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (45 bp):
AATGGAATAGAGGCGTAATAGCAAATCAATTGTTTGGTTGAATGG
Found at i:13771370 original size:25 final size:26
Alignment explanation
Indices: 13771338--13771420 Score: 75
Period size: 25 Copynumber: 3.3 Consensus size: 26
13771328 ATTATATATT
* *
13771338 TATAAAAACATTAAAGTATTTAAATA
1 TATAAAATCATTAAAGTATATAAATA
13771364 TATAAAAGTCCA-T-AA-TATATAAATA
1 TATAAAA-T-CATTAAAGTATATAAATA
* * *
13771389 TATAAAATC-CTATAGTATGTAAATA
1 TATAAAATCATTAAAGTATATAAATA
13771414 TATAAAA
1 TATAAAA
13771421 GCTTTATAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
23 2 0.04
24 2 0.04
25 32 0.67
26 9 0.19
27 1 0.02
28 2 0.04
ACGTcount: A:0.55, C:0.06, G:0.05, T:0.34
Consensus pattern (26 bp):
TATAAAATCATTAAAGTATATAAATA
Found at i:13771457 original size:15 final size:15
Alignment explanation
Indices: 13771439--13771483 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
13771429 AATTTATTAG
13771439 TATATATTTTATAAA
1 TATATATTTTATAAA
13771454 TATATATTTCTAT-AA
1 TATATATTT-TATAAA
13771469 TATATA-TTTATAAA
1 TATATATTTTATAAA
13771483 T
1 T
13771484 TTTTATAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 3 0.11
14 5 0.18
15 17 0.61
16 3 0.11
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATATTTTATAAA
Found at i:13771457 original size:29 final size:29
Alignment explanation
Indices: 13771425--13771483 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
13771415 ATAAAAGCTT
*
13771425 TATAAATTTAT-TAGTATATATTTTATAAA
1 TATAAATTTATATAATATATA-TTTATAAA
* *
13771454 TATATATTTCTATAATATATATTTATAAA
1 TATAAATTTATATAATATATATTTATAAA
13771483 T
1 T
13771484 TTTTATAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (29 bp):
TATAAATTTATATAATATATATTTATAAA
Found at i:13771458 original size:13 final size:14
Alignment explanation
Indices: 13771425--13771483 Score: 64
Period size: 15 Copynumber: 4.1 Consensus size: 14
13771415 ATAAAAGCTT
* * *
13771425 TATAAATTTATTAG
1 TATATATTTATAAA
13771439 TATATATTTTATAAA
1 TATATA-TTTATAAA
*
13771454 TATATATTTCTATAA
1 TATATATTTATA-AA
13771469 TATATATTTATAAA
1 TATATATTTATAAA
13771483 T
1 T
13771484 TTTTATAATG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
14 13 0.34
15 25 0.66
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (14 bp):
TATATATTTATAAA
Found at i:13771474 original size:23 final size:23
Alignment explanation
Indices: 13771448--13771497 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
13771438 GTATATATTT
*
13771448 TATAAATATATATTTCTATAATA
1 TATAAATATAAATTTCTATAATA
** * *
13771471 TATATTTATAAATTTTTATAATG
1 TATAAATATAAATTTCTATAATA
13771494 TATA
1 TATA
13771498 TTAAAATTAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TATAAATATAAATTTCTATAATA
Found at i:13771498 original size:23 final size:23
Alignment explanation
Indices: 13771454--13771499 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
13771444 ATTTTATAAA
*
13771454 TATATATTTCTATAATATATATT
1 TATAAATTTCTATAATATATATT
* *
13771477 TATAAATTTTTATAATGTATATT
1 TATAAATTTCTATAATATATATT
13771500 AAAATTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
TATAAATTTCTATAATATATATT
Found at i:13782211 original size:9 final size:10
Alignment explanation
Indices: 13782193--13782221 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
13782183 CTAGATAACA
13782193 AATCATATAT
1 AATCATATAT
13782203 AAT-ATATAT
1 AATCATATAT
13782212 AATCATATAT
1 AATCATATAT
13782222 TATAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
AATCATATAT
Found at i:13782324 original size:27 final size:28
Alignment explanation
Indices: 13782267--13782325 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
13782257 AAATTCAAAA
* *
13782267 TTTTAAATATTTATCGGGTTAGGTCGTT
1 TTTTAAATATTTATCGGATTAGGTCGAT
* *
13782295 TTTTAAATATTTGT-GGATTAGGTTGAT
1 TTTTAAATATTTATCGGATTAGGTCGAT
13782322 TTTT
1 TTTT
13782326 GAAAATGCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 14 0.52
28 13 0.48
ACGTcount: A:0.22, C:0.03, G:0.20, T:0.54
Consensus pattern (28 bp):
TTTTAAATATTTATCGGATTAGGTCGAT
Found at i:13788313 original size:50 final size:50
Alignment explanation
Indices: 13788246--13788391 Score: 175
Period size: 50 Copynumber: 2.9 Consensus size: 50
13788236 TTTTCTGTAC
* * **
13788246 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATAACAA
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAACAA
* ** ** **
13788296 TGCCCATGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAACAA
* *
13788346 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATA
13788392 GTCTCAATGA
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 79 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAACAA
Found at i:13794672 original size:50 final size:50
Alignment explanation
Indices: 13794579--13794776 Score: 162
Period size: 50 Copynumber: 3.8 Consensus size: 50
13794569 TTTTCTGTAT
* * * ** * ** *
13794579 TGCCAATGTCATATCCCAGATATGGAATTACATGGGAGTTCTCATAACAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCAG
* * * * *
13794629 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGGCCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCAG
* * *
13794679 TGTCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAGTCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATA---TC-A-G
* * *
13794734 ATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
13794777 TTACCCAAAT
Statistics
Matches: 116, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
50 75 0.65
53 2 0.02
55 1 0.01
56 38 0.33
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCAG
Found at i:13797942 original size:18 final size:19
Alignment explanation
Indices: 13797916--13797952 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
13797906 AATTTTGGAA
13797916 TGGAAAGAAGAGA-GAAAG
1 TGGAAAGAAGAGAGGAAAG
*
13797934 TGGAGAGAAGAGAGGAAAG
1 TGGAAAGAAGAGAGGAAAG
13797953 ATGTGAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.43, T:0.05
Consensus pattern (19 bp):
TGGAAAGAAGAGAGGAAAG
Found at i:13804591 original size:30 final size:30
Alignment explanation
Indices: 13804539--13804595 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
13804529 TTGAAAATGT
* *
13804539 TTACAAAAAGAGGCATCTAATTTTTAATAA
1 TTACAAAAAGAGGCACCAAATTTTTAATAA
13804569 TTACAAAAAGA-GCAACCAAATTTTTAA
1 TTACAAAAAGAGGC-ACCAAATTTTTAA
13804596 AAATAATTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.30
Consensus pattern (30 bp):
TTACAAAAAGAGGCACCAAATTTTTAATAA
Found at i:13811413 original size:18 final size:19
Alignment explanation
Indices: 13811387--13811423 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
13811377 AATTTTGGAA
13811387 TGGAAAGAAGAGA-GAAAG
1 TGGAAAGAAGAGAGGAAAG
*
13811405 TGGAGAGAAGAGAGGAAAG
1 TGGAAAGAAGAGAGGAAAG
13811424 ATGTGAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.43, T:0.05
Consensus pattern (19 bp):
TGGAAAGAAGAGAGGAAAG
Found at i:13815456 original size:21 final size:21
Alignment explanation
Indices: 13815430--13815472 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
13815420 TGAATTTGAG
*
13815430 ATTTTTTTGAAGTTTGAT-GGT
1 ATTTTTAT-AAGTTTGATAGGT
13815451 ATTTTTATAAGTTTGATAGGT
1 ATTTTTATAAGTTTGATAGGT
13815472 A
1 A
13815473 AATAAGACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.53
Consensus pattern (21 bp):
ATTTTTATAAGTTTGATAGGT
Found at i:13816333 original size:25 final size:25
Alignment explanation
Indices: 13816271--13816334 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
13816261 GGCCCATTTC
* *
13816271 ACAGCTTGTGTGAGCATTTACAATT
1 ACAGCTTGTGTGAGAAATTACAATT
* * *
13816296 ACAACTCGTGTGAGAAATTACAGTT
1 ACAGCTTGTGTGAGAAATTACAATT
*
13816321 ACAGCTTGGGTGAG
1 ACAGCTTGTGTGAG
13816335 CATTATTCCC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (25 bp):
ACAGCTTGTGTGAGAAATTACAATT
Found at i:13825576 original size:14 final size:14
Alignment explanation
Indices: 13825553--13825593 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
13825543 CAATTGGTGG
13825553 CTAG-TTCGGTTCA
1 CTAGATTCGGTTCA
13825566 CTAGATTCGGTTCAA
1 CTAGATTCGGTTC-A
*
13825581 CTA-ATGCGGTTCA
1 CTAGATTCGGTTCA
13825594 ACAGAGCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 5 0.20
14 16 0.64
15 4 0.16
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (14 bp):
CTAGATTCGGTTCA
Found at i:13825594 original size:14 final size:15
Alignment explanation
Indices: 13825559--13825595 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
13825549 GTGGCTAGTT
*
13825559 CGGTTC-ACTAGATT
1 CGGTTCAACTAGATG
13825573 CGGTTCAACTA-ATG
1 CGGTTCAACTAGATG
13825587 CGGTTCAAC
1 CGGTTCAAC
13825596 AGAGCAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (15 bp):
CGGTTCAACTAGATG
Found at i:13838933 original size:181 final size:181
Alignment explanation
Indices: 13838701--13839060 Score: 648
Period size: 181 Copynumber: 2.0 Consensus size: 181
13838691 GACTATAGAT
* *
13838701 AGCTCAACAAAGTCAGAATCAAGAAAAAATATCCCTTGCCATGTATTGATGATTTGTTTGATCAG
1 AGCTCAACAAAGTCACAATCAAGAAAAAATATCCCTTGCCACGTATTGATGATTTGTTTGATCAG
*
13838766 TTGAAAGGTGTGACAGTATTTTCAAAGATTCATCTCTGTTGTAGATATTATCAACTACGGGTTAA
66 CTGAAAGGTGTGACAGTATTTTCAAAGATTCATCTCTGTTGTAGATATTATCAACTACGGGTTAA
* *
13838831 ATATTTGGACGTGTCGAAAACTACTTTTAGAACTAGGTACGGACACTATAC
131 AGATTTGGACGTGTCAAAAACTACTTTTAGAACTAGGTACGGACACTATAC
*
13838882 AGCTCAACAAAGTCACAATCAATAAAAAATATCCCTTGCCACGTATTGATGATTTGTTTGATCAG
1 AGCTCAACAAAGTCACAATCAAGAAAAAATATCCCTTGCCACGTATTGATGATTTGTTTGATCAG
* *
13838947 CTGAAAGGTGTGACAGTGTTTTCAAAGATTCATCTCTGTTGTGGATATTATCAACTACGGGTTAA
66 CTGAAAGGTGTGACAGTATTTTCAAAGATTCATCTCTGTTGTAGATATTATCAACTACGGGTTAA
13839012 AGATTTGGACGTGTCAAAAACTACTTTTAGAACTAGGTACGGACACTAT
131 AGATTTGGACGTGTCAAAAACTACTTTTAGAACTAGGTACGGACACTAT
13839061 GAATTTCCAT
Statistics
Matches: 171, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
181 171 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (181 bp):
AGCTCAACAAAGTCACAATCAAGAAAAAATATCCCTTGCCACGTATTGATGATTTGTTTGATCAG
CTGAAAGGTGTGACAGTATTTTCAAAGATTCATCTCTGTTGTAGATATTATCAACTACGGGTTAA
AGATTTGGACGTGTCAAAAACTACTTTTAGAACTAGGTACGGACACTATAC
Found at i:13841675 original size:29 final size:29
Alignment explanation
Indices: 13841613--13841684 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
13841603 GCTATAGATT
* *
13841613 ATGAAAAAGGATGGTGACAACCATTAACA
1 ATGAAAAGGGATGGTGACAACCATGAACA
*
13841642 ATGAAAAGGGATGGTGACGACCATCGAAC-
1 ATGAAAAGGGATGGTGACAACCAT-GAACA
* *
13841671 TTGAAAAGCGATGG
1 ATGAAAAGGGATGG
13841685 CTTCAGCTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 34 0.92
30 3 0.08
ACGTcount: A:0.42, C:0.14, G:0.28, T:0.17
Consensus pattern (29 bp):
ATGAAAAGGGATGGTGACAACCATGAACA
Found at i:13841825 original size:118 final size:117
Alignment explanation
Indices: 13841586--13841830 Score: 280
Period size: 118 Copynumber: 2.1 Consensus size: 117
13841576 ATTGACAAAT
* * * * * *
13841586 AAAAACGGATAGCTTCGGCTATAGATTATGAAAAAGGATGGTGACAACCATTAACAATGAAAAGG
1 AAAAA-GGATAGCTTCAGCAATAAATTATGAAAAAGGAGGGTGACAACCATCAACAACGAAAAGG
* *
13841651 GATGGTGACGACCATCGAACTTGAAAAGCGATGGCTTCAGCTATCAAGCCATG
65 GATGGTGACGACCATCAAACTTGAAAAGCGATAGCTTCAGCTATCAAGCCATG
* * **
13841704 AAAAGGGATAGCTTCAGCAATAAAATTATGAAAAGGGAGGGTGATGACCATCAACAACG-AAAGG
1 AAAAAGGATAGCTTCAGCAAT-AAATTATGAAAAAGGAGGGTGACAACCATCAACAACGAAAAGG
* * * *
13841768 GATGGTGACGACCATCAAATTATGGAAAAG-GATAGCTTCGGCTGTCGAA-CTATG
65 GATGGTGACGACCATCAAACT-T-GAAAAGCGATAGCTTCAGCTATC-AAGCCATG
13841822 AAAAAGGAT
1 AAAAAGGAT
13841831 GACTTTGGTT
Statistics
Matches: 106, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
117 38 0.36
118 60 0.57
119 8 0.08
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.20
Consensus pattern (117 bp):
AAAAAGGATAGCTTCAGCAATAAATTATGAAAAAGGAGGGTGACAACCATCAACAACGAAAAGGG
ATGGTGACGACCATCAAACTTGAAAAGCGATAGCTTCAGCTATCAAGCCATG
Found at i:13845541 original size:18 final size:19
Alignment explanation
Indices: 13845518--13845553 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
13845508 TCATATGCCA
13845518 AAGTGAAAAA-TGATTTTT
1 AAGTGAAAAAGTGATTTTT
13845536 AAGTGAAAAAGTGATTTT
1 AAGTGAAAAAGTGATTTT
13845554 GGTCATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.36
Consensus pattern (19 bp):
AAGTGAAAAAGTGATTTTT
Found at i:13849839 original size:488 final size:489
Alignment explanation
Indices: 13848922--13849890 Score: 1562
Period size: 488 Copynumber: 2.0 Consensus size: 489
13848912 ATTTCTTCGG
* *
13848922 AAATGTCTCTAGGAAAAAATCCCAAGTTAATTTGTTCACAACATTTCCCTGCTTCACAGTGTTCC
1 AAATGTCTCCAGGAAAAAATCCCAAGTTAATTTGTTCACAACAGTTCCCTGCTTCACAGTGTTCC
** * * *
13848987 ATTAGCGATAAGCTTCGCCAGTGAGTAGTGACATAGTGCATCCCACTTTTTTCTTCCTCGGTACA
66 ACCAGCGATAAGCTTCCCCAGTGAGTACTGACATAGTGCATCCCACTTTTTTCTTCCTCGATACA
* *
13849052 GGCCATTTGCTCAAGGATTTTCTCAACTCCCTCGACCTAATACTTAGCCTTGGTAGGATCAGTTC
131 GGCCATTTGCTCAAGGATTTTCTCAACTCCCTCGACCCAATACTCAGCCTTGGTAGGATCAGTTC
* * * *
13849117 CTCTAACTCCACTATTGGTAGACGCTCTAATGGCAATCCTCAATTGGCAGGGACATGGTTCGCAC
196 CTCTAACCCCACTATTGGAAGACGCTCTAATGGCAATCCTCAACTGGCAGGGACATGGGTCGCAC
* *
13849182 CAGCATATCGTTGAAATGCTCCTAGCAGAGCTTGTACCAGTGGTTCGAAATTCTCATCCAAAGCA
261 CAGCATATCATTGAAATGCTCCTAGCAGAGCTTGTACCAGTGGTTCGAAACTCTCATCCAAAGCA
* *
13849247 CTAGCCCTGCAAGATCGCACTAGTGATGTCAAAGTCCTATCACCTTCTAAAAGGTCCACGGCTCT
326 CTAGCCCTGCAAGATCGCACTAGTGATGTCAAAATCCTATCACCTTCTAAAAGGTCCACGGCTCC
* *
13849312 ATTAACACAACTTGTATTCACACTTTTGGGAGGCATTTTACTTACTCTAGATGTGCATAAGACAT
391 ATTAACACAACTTGGATTCACACTTTTGGGAGGCATTTTACTTACTCTAGATGTGCATAAGACAC
*
13849377 AAGCTTAAGCACATAAAATGATACATATCCTCTT
456 AAGCTGAAGCACATAAAATGATACATATCCTCTT
* *
13849411 AAATGTCTCCAGGAAGAAATCCCAAGTTAATTTGTTCACAATAGTTCCCTGCTTCACAGTGTTCC
1 AAATGTCTCCAGGAAAAAATCCCAAGTTAATTTGTTCACAACAGTTCCCTGCTTCACAGTGTTCC
* ** *
13849476 ACCAGCGATGAGCTTCCCCAGTGAGTACTGGTATAGTGCATCCCAC-TTTTTCTTCCTTGATACA
66 ACCAGCGATAAGCTTCCCCAGTGAGTACTGACATAGTGCATCCCACTTTTTTCTTCCTCGATACA
13849540 GGCCATTTGCTCAAGGATTTTCTCAACTCCCTCGACCCAATACTCAGCCTTGGTAGGATCAGTTC
131 GGCCATTTGCTCAAGGATTTTCTCAACTCCCTCGACCCAATACTCAGCCTTGGTAGGATCAGTTC
* * *
13849605 CTTTAACCCCGCTGTTGGAAGACGCTCTAATGGCAATCCTCAACTGGCAGGGACATGGGTCGCAC
196 CTCTAACCCCACTATTGGAAGACGCTCTAATGGCAATCCTCAACTGGCAGGGACATGGGTCGCAC
* *
13849670 CAGCATATCATTGAAATGCTCCTAGCATAGCTTGTACCAGTGGTTCGACACTCTCATCCAAAGCA
261 CAGCATATCATTGAAATGCTCCTAGCAGAGCTTGTACCAGTGGTTCGAAACTCTCATCCAAAGCA
* * *** *
13849735 CTAGCCCTGCAAGGTCGCATTAGTGATGTCAAAATCCTATCACCTTCTAAAAGGTCTGTGGTTCC
326 CTAGCCCTGCAAGATCGCACTAGTGATGTCAAAATCCTATCACCTTCTAAAAGGTCCACGGCTCC
** *
13849800 ATTAACACATGTTGGATTCACACTTTTGGGAGGCATTTTACTTATTCTAGATGTGCATAAGACAC
391 ATTAACACAACTTGGATTCACACTTTTGGGAGGCATTTTACTTACTCTAGATGTGCATAAGACAC
*
13849865 AAGCTGAAGCACATAAAATTATACAT
456 AAGCTGAAGCACATAAAATGATACAT
13849891 TCTAAGATTA
Statistics
Matches: 439, Mismatches: 41, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
488 339 0.77
489 100 0.23
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (489 bp):
AAATGTCTCCAGGAAAAAATCCCAAGTTAATTTGTTCACAACAGTTCCCTGCTTCACAGTGTTCC
ACCAGCGATAAGCTTCCCCAGTGAGTACTGACATAGTGCATCCCACTTTTTTCTTCCTCGATACA
GGCCATTTGCTCAAGGATTTTCTCAACTCCCTCGACCCAATACTCAGCCTTGGTAGGATCAGTTC
CTCTAACCCCACTATTGGAAGACGCTCTAATGGCAATCCTCAACTGGCAGGGACATGGGTCGCAC
CAGCATATCATTGAAATGCTCCTAGCAGAGCTTGTACCAGTGGTTCGAAACTCTCATCCAAAGCA
CTAGCCCTGCAAGATCGCACTAGTGATGTCAAAATCCTATCACCTTCTAAAAGGTCCACGGCTCC
ATTAACACAACTTGGATTCACACTTTTGGGAGGCATTTTACTTACTCTAGATGTGCATAAGACAC
AAGCTGAAGCACATAAAATGATACATATCCTCTT
Found at i:13854795 original size:17 final size:17
Alignment explanation
Indices: 13854756--13854797 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
13854746 TAGGACTTAG
*
13854756 TTTTATGTTTTTCTTTA
1 TTTTATGTTTCTCTTTA
13854773 TGTTTATGTTTCT-TTTA
1 T-TTTATGTTTCTCTTTA
13854790 CTTTTATG
1 -TTTTATG
13854798 AACCGATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.12, C:0.07, G:0.10, T:0.71
Consensus pattern (17 bp):
TTTTATGTTTCTCTTTA
Found at i:13868372 original size:50 final size:50
Alignment explanation
Indices: 13868261--13868607 Score: 306
Period size: 50 Copynumber: 6.8 Consensus size: 50
13868251 ATTTGGGTAA
* * * *
13868261 AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGCCATCATTGAGATTATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-A--ATG
13868317 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAAATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAAATG
* * * * * *
13868367 AGAGGTCGCAAGTAAGACCATGTCTAGGACATGGCGTTGGCTCCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAAATG
* *
13868417 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACC-AAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAA-ATG
* * * * * *
13868467 AGTGGTCCCCTGTAAGACCATGTTTGGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAAATG
** * * * * *
13868517 AGAACTCTCATGTAAGAACATATCCGGGATATGGCATTGGCA--GTACAA-G
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-A-AATG
* ** * * *
13868566 AAACATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
13868608 TGTTATATTC
Statistics
Matches: 241, Mismatches: 46, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
49 34 0.14
50 162 0.67
51 1 0.00
52 1 0.00
53 2 0.01
55 1 0.00
56 40 0.17
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAAATG
Found at i:13868551 original size:150 final size:152
Alignment explanation
Indices: 13868261--13868557 Score: 346
Period size: 150 Copynumber: 1.9 Consensus size: 152
13868251 ATTTGGGTAA
*
13868261 AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGCCATCATTGAGATTATAAGAGGTCCC
1 AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGCCACCA-T-AG--TATAAGAGGTCCC
* ** * *
13868326 ATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAAATGAGAGGTCGCAAGTAAGACCATGTC
62 ATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAAATGAGAACTCGCAAGTAAGAACATATC
* *
13868391 TAGGACATGGCGTTGGCTCCGAGATG
127 CAGGACATGGCATTGGCTCCGAGATG
* * * * * * *
13868417 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCA-AG-ATGAGTGGTCCCCTGT
1 AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGCCACCATAGTATAAGAGGTCCCATGT
* * * * * *
13868480 AAGACCATGTTTGGGACATGGCATGGGCACCTATATGAGAACTCTCATGTAAGAACATATCCGGG
66 AAGACCATGTCTGGGACATGGCATGGGCACCGAAATGAGAACTCGCAAGTAAGAACATATCCAGG
*
13868545 ATATGGCATTGGC
131 ACATGGCATTGGC
13868558 AGTACAAGAA
Statistics
Matches: 119, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
150 77 0.65
153 2 0.02
156 40 0.34
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (152 bp):
AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGCCACCATAGTATAAGAGGTCCCATGT
AAGACCATGTCTGGGACATGGCATGGGCACCGAAATGAGAACTCGCAAGTAAGAACATATCCAGG
ACATGGCATTGGCTCCGAGATG
Found at i:13872397 original size:21 final size:21
Alignment explanation
Indices: 13872366--13872419 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
13872356 ACTGTTCTTG
**
13872366 AGAAGGAAGTTGTTGCTGCAGA
1 AGAA-GAAGTTGTTGCTAAAGA
*
13872388 AGAAGAAGTTATTGCTAAAGA
1 AGAAGAAGTTGTTGCTAAAGA
13872409 AGAAGAAGTTG
1 AGAAGAAGTTG
13872420 CTAAAGATGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.41, C:0.06, G:0.31, T:0.22
Consensus pattern (21 bp):
AGAAGAAGTTGTTGCTAAAGA
Found at i:13872408 original size:18 final size:18
Alignment explanation
Indices: 13872385--13872426 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 18
13872375 TTGTTGCTGC
13872385 AGAAGAAGAAGTTATTGCTAA
1 AGAAGAAGAAG---TTGCTAA
13872406 AGAAGAAGAAGTTGCTAA
1 AGAAGAAGAAGTTGCTAA
13872424 AGA
1 AGA
13872427 TGAAAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 10 0.48
21 11 0.52
ACGTcount: A:0.50, C:0.05, G:0.26, T:0.19
Consensus pattern (18 bp):
AGAAGAAGAAGTTGCTAA
Found at i:13876511 original size:23 final size:23
Alignment explanation
Indices: 13876485--13876584 Score: 119
Period size: 23 Copynumber: 4.3 Consensus size: 23
13876475 CATCATGGTG
*
13876485 TATTCTATGATGTCTTTATGGCA
1 TATTCTATGATGTCTTTGTGGCA
* *
13876508 TATTCTGTGAAGTCTTTGTGGCA
1 TATTCTATGATGTCTTTGTGGCA
13876531 TATTCTATGATGTCTTTGTGGCA
1 TATTCTATGATGTCTTTGTGGCA
* * * * * *
13876554 AACTCTGTGAAGCCTTTGTGGCT
1 TATTCTATGATGTCTTTGTGGCA
13876577 TATTCTAT
1 TATTCTAT
13876585 AACGCCCTTA
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 63 1.00
ACGTcount: A:0.19, C:0.15, G:0.21, T:0.45
Consensus pattern (23 bp):
TATTCTATGATGTCTTTGTGGCA
Found at i:13876535 original size:46 final size:46
Alignment explanation
Indices: 13876485--13876584 Score: 155
Period size: 46 Copynumber: 2.2 Consensus size: 46
13876475 CATCATGGTG
* * *
13876485 TATTCTATGATGTCTTTATGGCATATTCTGTGAAGTCTTTGTGGCA
1 TATTCTATGATGTCTTTATGGCAAACTCTGTGAAGCCTTTGTGGCA
* *
13876531 TATTCTATGATGTCTTTGTGGCAAACTCTGTGAAGCCTTTGTGGCT
1 TATTCTATGATGTCTTTATGGCAAACTCTGTGAAGCCTTTGTGGCA
13876577 TATTCTAT
1 TATTCTAT
13876585 AACGCCCTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.19, C:0.15, G:0.21, T:0.45
Consensus pattern (46 bp):
TATTCTATGATGTCTTTATGGCAAACTCTGTGAAGCCTTTGTGGCA
Found at i:13876600 original size:46 final size:46
Alignment explanation
Indices: 13876511--13876601 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
13876501 TATGGCATAT
* * * * * **
13876511 TCTGTGAAGTCTTTGTGGCATATTCTATGATGTCTTTGTGGCAAAC
1 TCTGTGAAGCCTTTGTGGCATATTCTATAACGCCCTTAAGGCAAAC
*
13876557 TCTGTGAAGCCTTTGTGGCTTATTCTATAACGCCCTTAAGGCAAA
1 TCTGTGAAGCCTTTGTGGCATATTCTATAACGCCCTTAAGGCAAA
13876602 AACTGGTTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (46 bp):
TCTGTGAAGCCTTTGTGGCATATTCTATAACGCCCTTAAGGCAAAC
Found at i:13887890 original size:12 final size:12
Alignment explanation
Indices: 13887873--13887925 Score: 83
Period size: 11 Copynumber: 4.6 Consensus size: 12
13887863 AACTAATCCT
13887873 CTCTCAAATTTC
1 CTCTCAAATTTC
*
13887885 CTCTCAAATTTT
1 CTCTCAAATTTC
13887897 CTCTC-AATTTC
1 CTCTCAAATTTC
13887908 CTCT-AAATTTC
1 CTCTCAAATTTC
13887919 CTCTCAA
1 CTCTCAA
13887926 TTTTGGTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
11 19 0.51
12 18 0.49
ACGTcount: A:0.25, C:0.32, G:0.00, T:0.43
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:13888030 original size:26 final size:25
Alignment explanation
Indices: 13888001--13888051 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
13887991 AGACTAAAGC
*
13888001 AAATTGACGATAAAGTTAAAAAAAAT
1 AAATTGA-GAGAAAGTTAAAAAAAAT
* *
13888027 AAATTGAGAGAAATTTTAAAAAAAT
1 AAATTGAGAGAAAGTTAAAAAAAAT
13888052 TAGAGTCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.61, C:0.02, G:0.12, T:0.25
Consensus pattern (25 bp):
AAATTGAGAGAAAGTTAAAAAAAAT
Found at i:13888594 original size:21 final size:22
Alignment explanation
Indices: 13888557--13888608 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
13888547 GTTTTGGTGC
*
13888557 TGTTATTTTTATGCTATTTTTTT
1 TGTTA-TTTTATGCTATTGTTTT
13888580 TGTTATTTT-TGCTATTGTTTT
1 TGTTATTTTATGCTATTGTTTT
*
13888601 TGTAATTT
1 TGTTATTT
13888609 GTACTGGCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 18 0.67
22 4 0.15
23 5 0.19
ACGTcount: A:0.13, C:0.04, G:0.12, T:0.71
Consensus pattern (22 bp):
TGTTATTTTATGCTATTGTTTT
Found at i:13891344 original size:151 final size:150
Alignment explanation
Indices: 13890630--13892015 Score: 1888
Period size: 151 Copynumber: 9.2 Consensus size: 150
13890620 AAAACCCATT
* *
13890630 AAAAATACGAACAAA-GGCCGAAATGAGGGTTTTTTTTAAATTTATTTAAAAAACACATTAAATT
1 AAAAATACGAACAAAGGGCCGAAAT-AAGG-TTTTTTT-AATTTATTTAAAAAACACAGTAAATT
13890694 AATACATTTCAAACATAATGT-CTAAAATAATGTAAAAT-ATAAAATTAGAAAATAATATATTTT
63 AATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTT
* *
13890757 TTAAAAGTAATAAACTCTGGGGA
128 TTAAAAGTAATAAAATCTCGGGA
* * * *
13890780 AAAAATACAAACAAAGTGTCAAAATAAGGTTTTTTTTAATTTATTT-AAAAACACAGTAAATTAA
1 AAAAATACGAACAAAGGGCCGAAATAAGG-TTTTTTTAATTTATTTAAAAAACACAGTAAATTAA
*
13890844 TACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA-TACAAAAATAATATATTTTT
65 TACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTA-GAAAATAATATA--TTT
* * *
13890908 ATTTGAGAGTAATAAAATCCCGGGA
127 -TTTAAAAGTAATAAAATCTCGGGA
* *
13890933 AAAAATACGAACAAAGGGCCGAAATAAGGGGTTTTTTAATTTATTTAAAAAACACACTAAATTAA
1 AAAAATACGAACAAAGGGCCGAAATAA-GGTTTTTTTAATTTATTTAAAAAACACAGTAAATTAA
* *
13890998 TACATTTCAAACATAATGTACTAAAATAATGTAAAATAAAAAAATTAGAAAATAGTATATTTTTT
65 TACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTT
13891063 AAAAGTAATAAAATC-CAGGG-
130 AAAAGTAATAAAATCTC-GGGA
* *
13891083 AAAAATACGAACAAAGGGCCGAAATAATGGTTTTTTTTAAATTTATTTAAAAAACACACTAAATG
1 AAAAATACGAACAAAGGGCCGAAATAA-GG-TTTTTTT-AATTTATTTAAAAAACACAGTAAATT
* * ** ** *
13891148 AATACATTTCAAATATAATGTACTAAAATAATGTCATTTCCTAAAATTAGAAAATAGTATAGTTT
63 AATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATA-TTT
* *
13891213 TTT-AAAGTAATAAACTCTGGGGGA
127 TTTAAAAGTAATAAAATCT-CGGGA
*
13891237 AAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTTAATTTATTTAAAAAATACAGTAAATTAAT
1 AAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTTAATTTATTTAAAAAACACAGTAAATTAAT
*
13891302 ACATTTCGAACATAATGTACTAAAATAATGTAAAATAATAAAA-TACGAAAATAATATATTTTTA
66 ACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTA-GAAAATAATATA-TTTT-
* *
13891366 TTGAGAGTAATAAAAT-TCGGGA
128 TTAAAAGTAATAAAATCTCGGGA
* *
13891388 AAAAATACGAACAAAGGGCCAAAATAATGG-TTTTTTAATTTATTTAAAAAA-ACACTAAATTAA
1 AAAAATACGAACAAAGGGCCGAAATAA-GGTTTTTTTAATTTATTTAAAAAACACAGTAAATTAA
13891451 TACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTT
65 TACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTT
** *
13891516 TGAAGTAATAAAAT-TTGGAGAA
130 AAAAGTAATAAAATCTCGG-G-A
* * * *
13891538 AAAAATACAAACAAAGTGTCAAAATAAGGTTTTTTTATATTTATTTAAAAAACACAGTAAATTAA
1 AAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTTA-ATTTATTTAAAAAACACAGTAAATTAA
*
13891603 TACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTT
65 TACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTT
* *
13891668 -AAAGTAATAAACTCTGGGGA
130 AAAAGTAATAAAATCTCGGGA
*
13891688 AAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTTAATTTATTTATAAAACACAGTAAATTAAT
1 AAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTTAATTTATTTAAAAAACACAGTAAATTAAT
*
13891753 ACATTTCAAACATTATGTACTAAAATAATGTAAAATAATAAAA-TACGAAAATAATATATTTTTA
66 ACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTA-GAAAATAATATA-TTTT-
* *
13891817 TTGAAAGTAATAAAAT-TCAGGA
128 TTAAAAGTAATAAAATCTCGGGA
* * *
13891839 AAAAATATGAACAAAAGGCCGAAATAAGGATTTTTTTAATTTATTTAAAAAAACACAATAAATTA
1 AAAAATACGAACAAAGGGCCGAAATAAGG-TTTTTTTAATTTATTT-AAAAAACACAGTAAATTA
* * * *
13891904 ATACATTTCAAATATAATGTACTAAAATAATGTAAAATAAAAAAATTAAAAAATAGTATATTTTT
64 ATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTT
**
13891969 TAAAAGTAATAAAATC-CGAAA
129 TAAAAGTAATAAAATCTCGGGA
* *
13891990 AAAAATACGAACAAATGGCCAAAATA
1 AAAAATACGAACAAAGGGCCGAAATA
13892016 CGAATAATTG
Statistics
Matches: 1109, Mismatches: 91, Indels: 71
0.87 0.07 0.06
Matches are distributed among these distances:
148 54 0.05
149 115 0.10
150 210 0.19
151 260 0.23
152 220 0.20
153 147 0.13
154 101 0.09
155 2 0.00
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (150 bp):
AAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTTAATTTATTTAAAAAACACAGTAAATTAAT
ACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTTA
AAAGTAATAAAATCTCGGGA
Found at i:13893578 original size:25 final size:25
Alignment explanation
Indices: 13893540--13893592 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
13893530 GATATTTATA
**
13893540 ACAATAAATTTTAGAACGAATTCAC
1 ACAATAAACCTTAGAACGAATTCAC
13893565 ACAATAAACCTTAGAACGAATTCAC
1 ACAATAAACCTTAGAACGAATTCAC
13893590 ACA
1 ACA
13893593 TGTTTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.21, G:0.08, T:0.23
Consensus pattern (25 bp):
ACAATAAACCTTAGAACGAATTCAC
Found at i:13910093 original size:47 final size:47
Alignment explanation
Indices: 13909995--13910093 Score: 110
Period size: 47 Copynumber: 2.1 Consensus size: 47
13909985 CAAATCAATG
* ****
13909995 GTGGCTTGTCCACAAAGTGTTTCAGTGGCAGTATATCTACATATTTG
1 GTGGTTTGTCCACAAAGTGTTTCAGTGGCAGTATATCTACATAACAA
* * *
13910042 GTGGTTTGTCCACAAAGTGTTATCAGTGTCAGTTTATCTGCA-AACAA
1 GTGGTTTGTCCACAAAGTGTT-TCAGTGGCAGTATATCTACATAACAA
13910089 GTGGT
1 GTGGT
13910094 GGCTTGTCCA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
47 26 0.60
48 17 0.40
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.35
Consensus pattern (47 bp):
GTGGTTTGTCCACAAAGTGTTTCAGTGGCAGTATATCTACATAACAA
Found at i:13913474 original size:8 final size:8
Alignment explanation
Indices: 13913461--13913489 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
13913451 CACTAGAGAT
13913461 CAGTGTTA
1 CAGTGTTA
13913469 CAGTGTTA
1 CAGTGTTA
13913477 CAGTGTTA
1 CAGTGTTA
13913485 CAGTG
1 CAGTG
13913490 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:13913602 original size:23 final size:23
Alignment explanation
Indices: 13913576--13913628 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
13913566 AGTGTTATTG
*
13913576 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCAGCTACAT
13913599 ATCAGTGGTAGCTTCAGCTACAT
1 ATCAGTGGTAGCTTCAGCTACAT
13913622 ATCAGTG
1 ATCAGTG
13913629 TGACACTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCAGCTACAT
Found at i:13918400 original size:101 final size:102
Alignment explanation
Indices: 13918285--13918469 Score: 311
Period size: 101 Copynumber: 1.8 Consensus size: 102
13918275 AAAGTGATGG
*
13918285 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAGATAGTGAT-GGTCACATGTGTAGT
13918348 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * *
13918386 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
13918451 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
13918470 TGAACCGGTA
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
101 39 0.50
102 35 0.45
103 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:13918407 original size:51 final size:49
Alignment explanation
Indices: 13918282--13918477 Score: 223
Period size: 51 Copynumber: 3.9 Consensus size: 49
13918272 GTGAAAGTGA
* * *
13918282 TGGTCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAGA-ATGAT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-G-T
* * * *
13918332 AGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-T
* * *
13918382 TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGT
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT
* *
13918432 GATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCGG
1 --TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
13918478 TATCATTAAT
Statistics
Matches: 122, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
50 41 0.34
51 80 0.66
52 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT
Found at i:13918471 original size:26 final size:26
Alignment explanation
Indices: 13918391--13918471 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
13918381 TTCGATCACG
13918391 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
13918417 CGTGTA-T-CGGATAGTG-ATGG-TCAC-A
1 TGTGTAGTAC-TAT-GTGCA-GGCT-ACTA
13918442 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
13918468 TGTG
1 TGTG
13918472 AACCGGTATC
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:13924357 original size:20 final size:20
Alignment explanation
Indices: 13924332--13924375 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
13924322 TGGATAGGAC
13924332 AACAATAATGCATTAAGACT
1 AACAATAATGCATTAAGACT
13924352 AACAATAATGCATTAAGACT
1 AACAATAATGCATTAAGACT
13924372 AACA
1 AACA
13924376 TGTAGTTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.52, C:0.16, G:0.09, T:0.23
Consensus pattern (20 bp):
AACAATAATGCATTAAGACT
Found at i:13930577 original size:29 final size:29
Alignment explanation
Indices: 13929963--13930566 Score: 816
Period size: 29 Copynumber: 20.8 Consensus size: 29
13929953 ATATCTATGC
* *
13929963 CCATCGAATATGAAAAGGGACGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGACGA
*
13929992 CCATCAAATATTG-AAAGGGATGGTGACGA
1 CCATCGAATA-TGAAAAGGGATGGTGACGA
** *
13930021 CCATCGAATATGAAAAGGGATGGTTTCCA
1 CCATCGAATATGAAAAGGGATGGTGACGA
**
13930050 CCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
* *
13930079 CCATCAAATATGAAAAGGGATGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGACGA
*
13930108 CCATCGAATATGAAAAGGGATGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGACGA
*
13930137 CCATCGAATATGAAAAGGGATGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGACGA
*
13930166 CCATCGAATATGAAAAGGGATGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGACGA
* * *
13930195 CCATCAAATATGAAAAGGGAGGGTGATGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
* ** *
13930224 CCATTGAATATGAAAAGGGATAATTTA-GA
1 CCATCGAATATGAAAAGGGAT-GGTGACGA
* * ** *
13930253 CCATCGAACATGAAAAGGAATGGTTTCAA
1 CCATCGAATATGAAAAGGGATGGTGACGA
*
13930282 CCATCGAATATGAAAAAGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
*
13930311 CCATCGAATATGGAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
* *
13930340 CCATCGAATATGAGAAGGGATGGTGATGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
* *
13930369 CCATTGAATATGAAAAGGGATAGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
**
13930398 CCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
*
13930427 CCATCGAATATGAAAAGGGATGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGACGA
* *
13930456 CCATCGAATATGGAAAGGGATGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGACGA
* **
13930485 CCATCGAATATGAGAAGGGATGGTGATAA
1 CCATCGAATATGAAAAGGGATGGTGACGA
*
13930514 CCATCGAATATGAAAAGGGATAGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
13930543 CCATCGAATATGAAAAGGGATGGT
1 CCATCGAATATGAAAAGGGATGGT
13930567 TTTGACCATC
Statistics
Matches: 510, Mismatches: 61, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
28 4 0.01
29 502 0.98
30 4 0.01
ACGTcount: A:0.39, C:0.13, G:0.28, T:0.20
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTGACGA
Found at i:13932284 original size:51 final size:52
Alignment explanation
Indices: 13932193--13932308 Score: 134
Period size: 51 Copynumber: 2.3 Consensus size: 52
13932183 CATTTTTAGG
*
13932193 TCATTT-T-CATTTTCATTTTAGAGAAAACAACATTCATTTCCAACT-TATT-
1 TCATTTCTCCATTTTCATTTTAGAGAAAACAACATTCATTTCCAAATGT-TTC
* * *
13932242 TCATTTCTCCATTTTCATTTTGGAGAAAACCATATT-ATTTTCCAAATGTTTC
1 TCATTTCTCCATTTTCATTTTAGAGAAAACAACATTCA-TTTCCAAATGTTTC
*
13932294 CCATTTCTCCATTTT
1 TCATTTCTCCATTTT
13932309 TACCATTTCT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
49 6 0.11
50 2 0.04
51 34 0.60
52 15 0.26
ACGTcount: A:0.28, C:0.21, G:0.05, T:0.47
Consensus pattern (52 bp):
TCATTTCTCCATTTTCATTTTAGAGAAAACAACATTCATTTCCAAATGTTTC
Found at i:13932314 original size:17 final size:18
Alignment explanation
Indices: 13932294--13932328 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
13932284 CAAATGTTTC
13932294 CCATTTC-TCCATTTTTA
1 CCATTTCTTCCATTTTTA
13932311 CCATTTCTTTCCATTTTT
1 CCATTTC-TTCCATTTTT
13932329 GTTCATTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
19 9 0.56
ACGTcount: A:0.14, C:0.29, G:0.00, T:0.57
Consensus pattern (18 bp):
CCATTTCTTCCATTTTTA
Found at i:13947082 original size:26 final size:27
Alignment explanation
Indices: 13947053--13947103 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
13947043 GATCGTAATG
13947053 CCCCTAGGGGGTAAATGACT-ATTTTT
1 CCCCTAGGGGGTAAATGACTGATTTTT
* *
13947079 CCCCTCGTGGGTAAATGACTGATTT
1 CCCCTAGGGGGTAAATGACTGATTT
13947104 GTGCTATGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.33
Consensus pattern (27 bp):
CCCCTAGGGGGTAAATGACTGATTTTT
Found at i:13947177 original size:16 final size:16
Alignment explanation
Indices: 13947153--13947183 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13947143 TAATTCTGAG
*
13947153 CATGGCATACTGCATA
1 CATGACATACTGCATA
13947169 CATGACATACTGCAT
1 CATGACATACTGCAT
13947184 GGGGTTGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (16 bp):
CATGACATACTGCATA
Found at i:13955887 original size:26 final size:26
Alignment explanation
Indices: 13955858--13955908 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
13955848 ATTGTTACTT
13955858 TGCTCGAAAACAATGATAGTTTATTA
1 TGCTCGAAAACAATGATAGTTTATTA
13955884 TGCTCGAAAACAATGATAGTTTATT
1 TGCTCGAAAACAATGATAGTTTATT
13955909 CTCTTAGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (26 bp):
TGCTCGAAAACAATGATAGTTTATTA
Found at i:13960592 original size:37 final size:37
Alignment explanation
Indices: 13960499--13960599 Score: 96
Period size: 37 Copynumber: 2.7 Consensus size: 37
13960489 GAATTTGATC
* * *
13960499 AATTAAACATCATTCAGTATATCAGTAAAACTTGCTT
1 AATTAAGCTTCATTCAGTATAACAGTAAAACTTGCTT
* * * * *
13960536 AGTTAAGCTCCAATT-AGTATAACGGTACAATTTGCTT
1 AATTAAGCTTC-ATTCAGTATAACAGTAAAACTTGCTT
* *
13960573 AATTGAGCTTCATTCAGTATAATAGTA
1 AATTAAGCTTCATTCAGTATAACAGTA
13960600 GGATTTGGCT
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
36 3 0.06
37 43 0.88
38 3 0.06
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.36
Consensus pattern (37 bp):
AATTAAGCTTCATTCAGTATAACAGTAAAACTTGCTT
Found at i:13961861 original size:15 final size:15
Alignment explanation
Indices: 13961841--13961872 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13961831 CTAAGGAAGG
*
13961841 GAATGATCCTGGTCT
1 GAATGATCATGGTCT
13961856 GAATGATCATGGTCT
1 GAATGATCATGGTCT
13961871 GA
1 GA
13961873 TTCTCCTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (15 bp):
GAATGATCATGGTCT
Found at i:13962535 original size:13 final size:13
Alignment explanation
Indices: 13962517--13962543 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13962507 AGATTTTGGA
13962517 AATGATTATCAAT
1 AATGATTATCAAT
13962530 AATGATTATCAAT
1 AATGATTATCAAT
13962543 A
1 A
13962544 TCCTACCACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.37
Consensus pattern (13 bp):
AATGATTATCAAT
Found at i:13966070 original size:14 final size:13
Alignment explanation
Indices: 13966030--13966063 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
13966020 TTTATTTTTC
13966030 CTTTTTTTCATTT
1 CTTTTTTTCATTT
*
13966043 CTTTACTTTCATTT
1 CTTT-TTTTCATTT
13966057 CTTTTTT
1 CTTTTTT
13966064 ATTATTTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.74
Consensus pattern (13 bp):
CTTTTTTTCATTT
Found at i:13966078 original size:24 final size:22
Alignment explanation
Indices: 13966049--13966117 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 22
13966039 ATTTCTTTAC
13966049 TTTCATTTCTTTTTTATTATTTG
1 TTTCATTTCTTTTTTA-TATTTG
** *
13966072 TTATCATTAATTATTTA-ATGTTG
1 TT-TCATTTCTTTTTTATAT-TTG
13966095 TTTCATTTCTATTTTTATATTTG
1 TTTCATTTCT-TTTTTATATTTG
13966118 GTTAATGAGC
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
22 8 0.22
23 15 0.42
24 13 0.36
ACGTcount: A:0.20, C:0.07, G:0.06, T:0.67
Consensus pattern (22 bp):
TTTCATTTCTTTTTTATATTTG
Found at i:13972534 original size:482 final size:478
Alignment explanation
Indices: 13971522--13975928 Score: 4681
Period size: 481 Copynumber: 9.2 Consensus size: 478
13971512 ATAGTATTCT
* ** * *
13971522 ACTATCTCCTTTCTCTTAGAAAAATGAAGACAATTCTCAAAGGAATAACTCTACAAAGCTCACTT
1 ACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTT
* * * * * *
13971587 CCTATGGATTTTCCTTCTAAATCAACAGTTAATATTTTTTTCCCAGAATAATTGTGCATAGATAC
66 CCTACGGATTTTCTTTC-AAGTCAACACTTAATA-TTTTTTCCCAGAAGAGTTGTGCATAGATAC
** * * * *
13971652 TATTCATGGGTAGACAATTACTATTTGAATTCACATTCAACGGATTCCCATAATGAATTTGATAT
129 TATTCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTTGATAC
* * *
13971717 TA-CTAGTCTACCGATCAAATCATCTCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAACGA
194 TACCT-GTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAACAA
* *
13971781 ACTATCTAGATCATTTAGAAGAATTCCACAAATCTATATTACAAAACACAAAAATACCCAAGATA
258 ACTATCCAGATCATTTAGAAGAATTCCACAAATCTATGTTACAAAACACAAAAATA-CCAAGATA
* * * * *
13971846 TCAAACAAATCAAATCCCAAAAAATTCTAGAATGAGATATGATACTATTCAAATATGGTGGATAC
322 TCAAACAACTCAAATACCATACAATTCTAGAATGAGATATGATACTATTCAGATATGGTGGATAC
* * * *
13971911 CAGATAACTCAAATTTCAACACTACATAGCACAGGC-AAGCACAAACTGATGAACTATTATATCT
387 CAGATAACTCAGATTTCAAC-CTACAT-TCACAGGCAAAG-ACAAACTGACGAACTCTTATATCT
*
13971975 TTCATAAGTATTAATACTCCCAAATTCTAA
449 TTCATAACTATTAATACTCCCAAATTCTAA
* * * * * *
13972005 ACTACCTCTTGTCTCTTGGAAAAATAAAGACACTTCTCAATGGAATAACTCTATAGAGCTCACTT
1 ACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTT
* * * * * * *
13972070 -CTAACGGATTTTATTTTCGAGTCAAAAATTGATATTTTTTCCCAGAATTA-TTGTCCATAGATA
66 CCT-ACGGATTTT-CTTTCAAGTCAACACTTAATATTTTTTCCCAGAA-GAGTTGTGCATAGATA
* * ** *
13972133 CAATTCATGGGCGGACAATTACTATCT-AAGATCACATTCGACAAATTCCCATACTGAATTTTAT
128 CTATTCATGGGCGGACAATTACTATCTGAA-TTCACATTCGACGGATTCCCATACTGAATTTGAT
* *
13972197 ACTACCTGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCTTAAAACTGATAACA
192 ACTACCTGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAACA
* * *
13972262 AACTATCGAGATCATTTAGAAGAATTCCACACATCTATGTTACAAAACACAAAAATACTAGAGAT
257 AACTATCCAGATCATTTAGAAGAATTCCACAAATCTATGTTACAAAACACAAAAATACCA-AGAT
* *
13972327 ATCCAACAACTCAAACACCATACAATTCTAGAATGAGATATGATACTATTCAGATATGGTGGATA
321 ATCAAACAACTCAAATACCATACAATTCTAGAATGAGATATGATACTATTCAGATATGGTGGATA
*
13972392 CCAGATAACTCAGATTTCAACCTTACATTCAATAGGCAAAGACAAACTGACGAACTCTTATATCT
386 CCAGATAACTCAGATTTCAACC-TACATTC-ACAGGCAAAGACAAACTGACGAACTCTTATATCT
* * *
13972457 TCCATAACTATTAATACACCCAAATCCTAA
449 TTCATAACTATTAATACTCCCAAATTCTAA
* * *
13972487 ACTATCTCTTTTCTCTTATAAAAACAAAGACACTTCTCAAAGGAATAACTCTAAACAGCTCACTT
1 ACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTT
* * * * * *
13972552 GCAACGGATTTTCTTTCCAGGTCAACACTTAATATTTTCTCCCAGAAGAGTTGTCCGTAGATACT
66 CCTACGGATTTTCTTT-CAAGTCAACACTTAATATTTTTTCCCAGAAGAGTTGTGCATAGATACT
* * *
13972617 ATTCATGGGCGGACAATTACTATCTGATTTCATATTCGACGGATTCCTC-TACTGAATTTTATAC
130 ATTCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCC-CATACTGAATTTGATAC
* * *
13972681 TACCTGTCTACCAATTAAATCATATCCCAGTTTCAAACCCAACCTACCCTCACATTGATAACAAA
194 TACCTGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAACAAA
* * * * * * *
13972746 CTGTCCAGATCTTTTAGAAAAACTCCACACATCTACGTTACAAGACACAAAAATACCCAAGATAT
259 CTATCCAGATCATTTAGAAGAATTCCACAAATCTATGTTACAAAACACAAAAATA-CCAAGATAT
*
13972811 CAAACACCTCAAATACCATACAATTCTAGAATGAGATATGATACTATTCAGATATGGTGGATACC
323 CAAACAACTCAAATACCATACAATTCTAGAATGAGATATGATACTATTCAGATATGGTGGATACC
* * * *
13972876 AAATAACTCAGATTTCAACCCTAC-TTGCATAGGCAACAG--AAACTCTA-GAACTTTTATATCT
388 AGATAACTCAGATTTCAA-CCTACATT-CACAGGCAA-AGACAAACT-GACGAACTCTTATATCT
13972937 TTCATAACTATTAATAGC-CCCAAATTCTAA
449 TTCATAACTATTAATA-CTCCCAAATTCTAA
* *
13972967 ACTATCTCTTTTCTCTTATAAAAACAAAGACACTTCTCAAAGGAATAACTTTACAGAGCTCACTT
1 ACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTT
* * * * * * *
13973032 CCTACGGATTTTCTTTCCAATTCAACACTTAATATATTCTCCAAGAAGAGTTGTGCACAAACACT
66 CCTACGGATTTTCTTT-CAAGTCAACACTTAATATTTTTTCCCAGAAGAGTTGTGCATAGATACT
* * * * *
13973097 ATTCATGGGAGGAGAATTACTATCTGAATTCACATTCGACGGATTCCCATACTAAATTTAAAAAC
130 ATTCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTT-GATAC
* * ** ** * **
13973162 -ACCAGTTTACCAATCAAATCATATCAAAGTTTCAAACCTTACCTACCCTCAAACTAATAATGAA
194 TACCTGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAACAAA
* * * * *
13973226 CTATTCATATCATTTAGAAGAATTCCACAAATCTATGCTACAAAACATAAAAAATACACAAGACA
259 CTATCCAGATCATTTAGAAGAATTCCACAAATCTATGTTACAAAACA-CAAAAATAC-CAAGATA
* * * * *
13973291 TCGAACAACTCAAATACAATATAATTCTAGAACGAGATATGATACTATTCAGATATGGTGGATAG
322 TCAAACAACTCAAATACCATACAATTCTAGAATGAGATATGATACTATTCAGATATGGTGGATAC
* * * *
13973356 CAGATAACTCAAATTTCAACCCTACATTGTACAGGCGAACG-CAAACTGACGAACTCTTATTTCT
387 CAGATAACTCAGATTTCAA-CCTACATT-CACAGGC-AAAGACAAACTGACGAACTCTTATATCT
* *
13973420 TTCATAACTATTAATACTCTCGAATTCTAA
449 TTCATAACTATTAATACTCCCAAATTCTAA
* * ** * ** * * * *
13973450 ACTATTTGTTTTCTCTTTTAAAATCGTAGATACTCCTCAAAGGAATAACTCCACAAAGCTCACTT
1 ACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTT
* * * * * *
13973515 CCTACAGATTTTCCTTCCAAGTGAACACTTAATATTTTTTTCCTAGAATAGTTGTGCATTGATAC
66 CCTACGGATTTT-CTTTCAAGTCAACACTTAATA-TTTTTTCCCAGAAGAGTTGTGCATAGATAC
* * * *
13973580 AATTCATGGGCCGACAATTACTATCTGAAGTCACATTCGAAGGATTCCCATACTGAATTTGATAC
129 TATTCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTTGATAC
** * * * * * *
13973645 TAATTGTTTACCAATAAAATCATTTCCCAGTTTCAAACCCAACTTATCCTCAAACTGATAATAAA
194 TACCTGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAACAAA
** * **
13973710 CTATCCAGATCATTTAGAAGAATTAAAAAAAAAT-TGTTACAAAACACAAAAATACCAAAGATAT
259 CTATCCAGATCATTTAGAAGAATTCCACAAATCTATGTTACAAAACACAAAAATACC-AAGATAT
* * * * * *
13973774 CAAACAACTCAAATACCATATAATTCTAGAACGAGATATGATATTATTCAAATATAGTGGATACA
323 CAAACAACTCAAATACCATACAATTCTAGAATGAGATATGATACTATTCAGATATGGTGGATACC
* * * * * *
13973839 AGGTAACTCAGATTTCAACACCACATAACACAGGC-GAGCACAAACTGACGAACTCCTAGATCTT
388 AGATAACTCAGATTTCAAC-CTACAT-TCACAGGCAAAG-ACAAACTGACGAACTCTTATATCTT
*
13973903 TCATAAATATTAATACTCCCAAATTCTAA
450 TCATAACTATTAATACTCCCAAATTCTAA
* * * * *
13973932 ACTATCTATTTTCTCTTAGAAAAACAAAGATACTTCTCAATGGAATAAATCTATAGAGCTCACTT
1 ACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTT
* * *
13973997 CCTGCGGATTTTATTTCCATGTC-A-AC---A-A-----T----G--GA-------ATAGATACT
66 CCTACGGATTTTCTTT-CAAGTCAACACTTAATATTTTTTCCCAGAAGAGTTGTGCATAGATACT
* ** * * * * **** * *
13974038 ATTCACGATCGAACAATTACTATCTGATTTCATATTCGACGGA-TTCCTCTAC-TGAAT---TTT
130 ATTCATGGGCGGACAATTACTATCTGAATTCACA-T--TC-GACGGATTC-CCAT-ACTGAATTT
* * * * *
13974098 -ATACTACCTGTCTACCAATTAAATCATATCCCAGTTTCAAACCCGACCTACCATCACACTAATA
189 GATACTACCTGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATA
* * * * * *
13974162 ACAAACTGTCCAGAT-ATTCTAGAAGAACTCCATACATCTACGTTACAAGACACAAAAATACCCA
254 ACAAACTATCCAGATCATT-TAGAAGAATTCCACAAATCTATGTTACAAAACACAAAAATA-CCA
* * *
13974226 AGATATCAAACAACTCAAATATCATATAATTCTAGAATGAGATATGATACTATTCAGATATTGTG
317 AGATATCAAACAACTCAAATACCATACAATTCTAGAATGAGATATGATACTATTCAGATATGGTG
* * * * * *
13974291 GATACCAGATAACTTAGATTTCAACCCTAC-TTGCACAGGCGAACAGAAACTCTA-GAACTTTTA
382 GATACCAGATAACTCAGATTTCAA-CCTACATT-CACAGGCAAAGACAAACT-GACGAACTCTTA
*
13974354 TATCTTTCATCACTATTAATAC-CCCTAAATTCTAA
444 TATCTTTCATAACTATTAATACTCCC-AAATTCTAA
* * *
13974389 ACTATCTCTTTTCTCTTATAAAAACGAAGACACTTCTCAAAGGAATAACTCTATAGAGCTCACTT
1 ACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTT
* * * * * *
13974454 CCTACGGATTTTCTTTCCAAGTCAACACTTAATATATTCTCCAATAGGAGTTGTGCACAGATACT
66 CCTACGGATTTTCTTT-CAAGTCAACACTTAATATTTTTTCCCAGAAGAGTTGTGCATAGATACT
* * * * *
13974519 ATTCATGGGCGGAGAATTACTATCTAAATTCACATTCGATGGATTCCCATACTAAATTTGATACC
130 ATTCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTTGATACT
* ** * * * * *
13974584 ACCAGTAGACAAATCAAATCATATCCAAGTTTCGAAA-CCTACCTAACCTCAAACTGATAATAAA
195 ACCTGTCTACCAATCAAATCATATCCCAGTTTC-AAACCCAACCTACCCTCAAACTGATAACAAA
* * * *
13974648 CTATCTAGATCATTTAGAAAAATTCCACAAATCTATGCTACAAAACACAAAAATAAACAAGATAT
259 CTATCCAGATCATTTAGAAGAATTCCACAAATCTATGTTACAAAACACAAAAAT-ACCAAGATAT
* * * * *
13974713 CAAACAACTCAAATACAATATAATTCTAG-ATCGTGATATGATACAATTCAGATACGGTGGATAC
323 CAAACAACTCAAATACCATACAATTCTAGAAT-GAGATATGATACTATTCAGATATGGTGGATAC
* * * ** * * *
13974777 CAGATAACTAAAATTTTAACCTTACATTGCACAGGTGAACA-AAACTGACAAACTCTTATATATT
387 CAGATAACTCAGATTTCAACC-TACATT-CACAGGCAAAGACAAACTGACGAACTCTTATATCTT
*
13974841 TCATAACTATTAATACTCTCAAATTCTAA
450 TCATAACTATTAATACTCCCAAATTCTAA
* ** * * * *
13974870 ACTATCTCTTTCCTCTTTTAAAATCATAGACACTTCTCAAAGGAATAACTCCACAAAGCTCACTT
1 ACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTT
* * * * * * *
13974935 CTTACGAATTTTCTTTCCAAGTGAACACTTAATATTTATTCCTAGAATAGTTGTGCATAGATACA
66 CCTACGGATTTTCTTT-CAAGTCAACACTTAATATTTTTTCCCAGAAGAGTTGTGCATAGATACT
* * * * *
13975000 ATTCATGGGCGGACAATTAGTATGTGAAGTCACATTCAAAGGATTCCCATACTGAATTCT-ATAC
130 ATTCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATT-TGATAC
* * *
13975064 TA-CTAGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACTTATCCTCAAACTGATAATAA
194 TACCT-GTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAACAA
* *
13975128 ACTATCCAGATCATTTAGAAGAATTCCACAAATCTTTGTTACAAAACACAAAAATGCCTAAGATA
258 ACTATCCAGATCATTTAGAAGAATTCCACAAATCTATGTTACAAAACACAAAAATACC-AAGATA
* * *
13975193 TCAAACAACTCAAATACCATATAATT-TAGGACT-AGATATGATACTATTTAGATATGGTGGATA
322 TCAAACAACTCAAATACCATACAATTCTA-GAATGAGATATGATACTATTCAGATATGGTGGATA
* * * * * * *
13975256 CCAGATAACTTAGATTTCAATCCTACATGGCACAGGCGAACACAAATTGATGAACTATTATATCT
386 CCAGATAACTCAGATTTCAA-CCTACAT-TCACAGGCAAAGACAAACTGACGAACTCTTATATCT
* *
13975321 TTCATAACTATTAATACACTCAAATTCTAA
449 TTCATAACTATTAATACTCCCAAATTCTAA
** * ** * * *
13975351 ACTATCTCTTTTCTCTTTTAAAATCGTAGACACTTCTCAAAGGAATAACTCCACAAAGTTCACTT
1 ACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTT
* *
13975416 CCTACGGATTTTTTTTCCAAGTCAACACTTAATATTTTTT-CCAGGAATAGTTGTGCATAGATAC
66 CCTACGGATTTTCTTT-CAAGTCAACACTTAATATTTTTTCCCA-GAAGAGTTGTGCATAGATAC
* * * * * *
13975480 AATTCATGGGCAGG-CAATTACTATTTGAAATCACATTTGAAGGATTCCCATACTGAATTTGACA
129 TATTCATGGGC-GGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTTGATA
** * * * * * *
13975544 CTA-CTAGTCTAAGAATCAAACCATATCCTAGTTTCAAACCCAACTTATCCTCAAACTGAAAATA
193 CTACCT-GTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAACA
* * *
13975608 AGCTATCCAGATCATTTAGACGAATTCCACAAATCCT-TGTTACAAAACACAAAAATGCCTAAGA
257 AACTATCCAGATCATTTAGAAGAATTCCACAAAT-CTATGTTACAAAACACAAAAATACC-AAGA
** *
13975672 TATCAAACAACTCAAATACCATGTAATTCTAGAATGAGAT-TGATGA-TATTCAGATATGGTTGA
320 TATCAAACAACTCAAATACCATACAATTCTAGAATGAGATATGAT-ACTATTCAGATATGGTGGA
* * ** * **
13975735 CACTAGATAACTCAGATTTCAACCCTACATTGCACAGGTGAACACAAACTGACGAACTCGGATAT
384 TACCAGATAACTCAGATTTCAA-CCTACATT-CACAGGCAAAGACAAACTGACGAACTCTTATAT
* *
13975800 CTTTCATAATTATTAATACTCTCAAATTCTAA
447 CTTTCATAACTATTAATACTCCCAAATTCTAA
** * * * *
13975832 ACTATCTCTTTTCTCTTTTAAAATCATAGACACTTCTCAAATGGAATAACCCTACAAAGCTCACT
1 ACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAA-GGAATAACTCTACAGAGCTCACT
* *
13975897 TCCTACGAATTTTCTTTCCAAGTCAATACTTA
65 TCCTACGGATTTTCTTT-CAAGTCAACACTTA
13975929 CACCATGTTT
Statistics
Matches: 3332, Mismatches: 484, Indels: 217
0.83 0.12 0.05
Matches are distributed among these distances:
456 6 0.00
457 240 0.07
458 110 0.03
459 5 0.00
460 4 0.00
461 5 0.00
462 1 0.00
463 1 0.00
464 1 0.00
466 1 0.00
468 1 0.00
470 1 0.00
474 2 0.00
476 1 0.00
477 6 0.00
478 4 0.00
479 1 0.00
480 383 0.11
481 1179 0.35
482 993 0.30
483 228 0.07
484 159 0.05
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (478 bp):
ACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTT
CCTACGGATTTTCTTTCAAGTCAACACTTAATATTTTTTCCCAGAAGAGTTGTGCATAGATACTA
TTCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTTGATACTA
CCTGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAACAAACT
ATCCAGATCATTTAGAAGAATTCCACAAATCTATGTTACAAAACACAAAAATACCAAGATATCAA
ACAACTCAAATACCATACAATTCTAGAATGAGATATGATACTATTCAGATATGGTGGATACCAGA
TAACTCAGATTTCAACCTACATTCACAGGCAAAGACAAACTGACGAACTCTTATATCTTTCATAA
CTATTAATACTCCCAAATTCTAA
Found at i:13978960 original size:120 final size:120
Alignment explanation
Indices: 13978803--13979557 Score: 1289
Period size: 120 Copynumber: 6.3 Consensus size: 120
13978793 TATGTTTAGA
* * *
13978803 AAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 AAAA-TATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGT
* * * *
13978868 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATT
65 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
* * * * *
13978924 AAATTGTATTTAATAATAATTATGTTAAAATATATTTTATACTATTATATATTATAATTTTAGTA
1 AAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGTA
* *
13978989 AATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATCATATATTTTAATT
66 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
13979044 AAAATATATTTAATAATAATTAT-TTCAAATTATATTTTATAGTATCATATATTATAATTTTAGT
1 AAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTATCATATATTATAATTTTAGT
13979108 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
65 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
13979164 AAAATATATTTAATAATAATTAT-TTCAAATTATATTTTATAGTATCATATATTATAATTTTAGT
1 AAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTATCATATATTATAATTTTAGT
13979228 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
65 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
*
13979284 AAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGTT
1 AAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGTA
*
13979349 AATTCATATAAGAAAATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
66 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
* * *
13979404 AAAATATATTTAATAATATTTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTA
1 AAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGTA
*
13979469 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATT
66 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
13979524 AAAATATATTTAATAATAATTATGTTAAATTATA
1 AAAATATATTTAATAATAATTATGTTAAATTATA
13979558 ATTAAATTAT
Statistics
Matches: 608, Mismatches: 24, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
119 2 0.00
120 601 0.99
121 5 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
AAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGTA
AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
Found at i:13979526 original size:18 final size:17
Alignment explanation
Indices: 13979498--13979532 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13979488 ATTATTAAGA
*
13979498 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13979515 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13979533 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13979790 original size:16 final size:16
Alignment explanation
Indices: 13979765--13979802 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
13979755 TTGATTTGCT
13979765 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
13979781 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
13979797 AATACA
1 ATTACA
13979803 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.29, C:0.34, G:0.03, T:0.34
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:13981042 original size:483 final size:483
Alignment explanation
Indices: 13979827--13981244 Score: 1732
Period size: 482 Copynumber: 2.9 Consensus size: 483
13979817 CCCTTAATGT
* * * * * * *
13979827 TTTTTTCCCAAAATAATTGTGCATAGATATTATTCACGGGCGTACAATTACTATCTAAATTCACA
1 TTTTTTCCCAGAATAGTTGTGCATAGATACTATTCATGGGAGGACAATTACTATCTGAATTCACA
* * * * *
13979892 TTCGACGGATTCACATACAGAATTTTATACTACCT-GTCCACCAATCAAATTATATCCCAATTTC
66 TTCGACGGATTCACATACTGAATTTGATACTA-CTAGTCTACCAATCAAATCATATCCCAGTTTC
* * * *
13979956 AAACCCAACCTACCCTCAAACTGATAACGAACTGTCCAA-ATCGTTTAGAAGAATTACACAAATC
130 AAACCCAACCTACCCTCAAACTAATAATGAACTGT-CAAGATCATTTAGAAGAATTCCACAAATC
* * *
13980020 TTTGTTACAAAACACAAAAATGACTAAGATATCAAACAACTCAAATACCATATAATTCTAGAACG
194 TTTGTTACAAAACATAAAAATGCCTAAGATATCAAACAACTCAACTACCATATAATTCTAGAACG
* * *
13980085 AGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAAATTTCAACCCTACATTGCGCAG
259 AGATATGATACTATTCAGATATGGTGGATACAAGATAACTCAGATTTCAACCCTACATTGCACAG
* * *
13980150 GCAAACACCAACTAAC-GAACTCTTATATCTTTCATAACTATGAATACTCCCAAATTCTAAACTA
324 GCGAACACAAACTAACTGAACTCTTATATCTTTCATAACTATTAATACTCCCAAATTCTAAACTA
* * * * * * * *
13980214 TCTCTTTTCTTTTCAAAAAACAAAGACACATATCAAAGGATTAACTCTACGGACCTCACTTCTTA
389 TCACTTCTCTTTTCAAAAAACAAACACACATATCAAACGAATAACTCTACAGACCACACTTCCTA
* *
13980279 CAGATTTTCTTTCCTAGTTAACACTTAATA
454 CAGATTTTCTTTCCAAGTCAACACTTAATA
* * * *
13980309 TTGTTTCCCAGAATAGTTCTGCATAGATACTATTCATGGGCTGG-CAAGTACTATCTGAATTCAC
1 TTTTTTCCCAGAATAGTTGTGCATAGATACTATTCATGGG-AGGACAATTACTATCTGAATTCAC
* * * *
13980373 ATTCGACGGATTCTCATACTAAATTTGGTACTACTAGTCTACCAATCAAATCATATCCAAGTTTC
65 ATTCGACGGATTCACATACTGAATTTGATACTACTAGTCTACCAATCAAATCATATCCCAGTTTC
* *
13980438 AAACCCTACCTACCCTCAAAC-AGATAATGAACTGTCCAGATCATTTAGAAGAATTCCACAAATC
130 AAACCCAACCTACCCTCAAACTA-ATAATGAACTGTCAAGATCATTTAGAAGAATTCCACAAATC
** ** * * * * * * *
13980502 AATGTTACAGTACATAAAAATACCCACGATATCAAATAACTGAACTTCAATATAATTCTA-ACAC
194 TTTGTTACAAAACATAAAAATGCCTAAGATATCAAACAACTCAACTACCATATAATTCTAGA-AC
* * * **
13980566 GAGATATGAGACTATTCAGATATGGTGGATACTAGATAATTCAGATTTCAACCCTACAAAGCACA
258 GAGATATGATACTATTCAGATATGGTGGATACAAGATAACTCAGATTTCAACCCTACATTGCACA
* *
13980631 GGCGACCACAAACT-ACTAAACTCTTATATCTTTCATAACTATTAATACTCCCAAATTCTAAACT
323 GGCGAACACAAACTAACTGAACTCTTATATCTTTCATAACTATTAATACTCCCAAATTCTAAACT
** * * * *
13980695 ATCACTTCTCTTTT-ACAAAAATGAACACACTTCTCAAACGAATAACTCTATAGAGCACACTTCC
388 ATCACTTCTCTTTTCA-AAAAACAAACACACATATCAAACGAATAACTCTACAGACCACACTTCC
* *
13980759 TACGGATTTTCTTTCCAAGTCGACACTTAATA
452 TACAGATTTTCTTTCCAAGTCAACACTTAATA
* ** *
13980791 TTATTTTCCTAGAATAGTTGTGCATAGATAGAATTCATGGGAGGACAATTACTATCTGAAGTCAC
1 TT-TTTTCCCAGAATAGTTGTGCATAGATACTATTCATGGGAGGACAATTACTATCTGAATTCAC
* * * * *
13980856 ATTCGAAGGATTCCCATGCTGAATTTGATACTAGTAGTCTACGAATCAAATCATATCCCAGTTTC
65 ATTCGACGGATTCACATACTGAATTTGATACTACTAGTCTACCAATCAAATCATATCCCAGTTTC
* * *
13980921 AAACCCAACTTACCCTCAAACTAATAATAAACTCTCAAGATCATTTAGAAGAATTCCACAAATCT
130 AAACCCAACCTACCCTCAAACTAATAATGAACTGTCAAGATCATTTAGAAGAATTCCACAAATCT
* * *
13980986 TTGTTACAAAACATATAAATGCCTAAGATATAAAACAACTTAACTACCATATAATTCTAGAACGA
195 TTGTTACAAAACATAAAAATGCCTAAGATATCAAACAACTCAACTACCATATAATTCTAGAACGA
* * *
13981051 GATATGATACAATTCAGATATGGTGGATACAAGAAAACTCAGATTTCAACCTTACATTGCACAGG
260 GATATGATACTATTCAGATATGGTGGATACAAGATAACTCAGATTTCAACCCTACATTGCACAGG
* * * * * *
13981116 CGAACACAAACTGA-TGAACACTTATATCTTCCAAAACTCTTAATACTCCCAAATTCTAAAATAT
325 CGAACACAAACTAACTGAACTCTTATATCTTTCATAACTATTAATACTCCCAAATTCTAAACTAT
* * *
13981180 CTCTT-T-TTCTT-AGAAAAGC-AACAACACATTTCAAA-GCAATAACTCTACAGAGCC-CACTT
390 CACTTCTCTT-TTCA-AAAAACAAAC-ACACATATCAAACG-AATAACTCTACAGA-CCACACTT
*
13981239 TCTACA
450 CCTACA
13981245 AACCCAACTT
Statistics
Matches: 792, Mismatches: 128, Indels: 32
0.83 0.13 0.03
Matches are distributed among these distances:
481 14 0.02
482 441 0.56
483 334 0.42
484 3 0.00
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.29
Consensus pattern (483 bp):
TTTTTTCCCAGAATAGTTGTGCATAGATACTATTCATGGGAGGACAATTACTATCTGAATTCACA
TTCGACGGATTCACATACTGAATTTGATACTACTAGTCTACCAATCAAATCATATCCCAGTTTCA
AACCCAACCTACCCTCAAACTAATAATGAACTGTCAAGATCATTTAGAAGAATTCCACAAATCTT
TGTTACAAAACATAAAAATGCCTAAGATATCAAACAACTCAACTACCATATAATTCTAGAACGAG
ATATGATACTATTCAGATATGGTGGATACAAGATAACTCAGATTTCAACCCTACATTGCACAGGC
GAACACAAACTAACTGAACTCTTATATCTTTCATAACTATTAATACTCCCAAATTCTAAACTATC
ACTTCTCTTTTCAAAAAACAAACACACATATCAAACGAATAACTCTACAGACCACACTTCCTACA
GATTTTCTTTCCAAGTCAACACTTAATA
Found at i:13982238 original size:483 final size:480
Alignment explanation
Indices: 13981257--13985693 Score: 4871
Period size: 482 Copynumber: 9.3 Consensus size: 480
13981247 CCCAACTTTT
* * * *
13981257 TATGTTACAAAACATAAGACA-GCCCAAGATATCAAATAACTCAAATACCATATAATTCTAGAAC
1 TATGTTACAAAACACAA-AAATACCCAAGATATCAAACAACTCAAATACCATATAATTCTAGAAC
* * * *
13981321 GAGATATGATACTATTTAGATATGGTGGATACCAGATAAATGAGATTTCAACCCTACAATGCACA
65 GAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACA
* *
13981386 GGCGAACA-AAACCTGACGAACTCTTATATCTTTCATAACTCTTAACACTCCCAAATTCTAAACT
130 GGCGAACACAAA-CTGACGAACTCTTATATCTTTCATAAC-ATTAATACTCCCAAATTCTAAACT
* * * * * *
13981450 ATCTCTTTTTTCTTAGAAATACGAAGACACTT-TCCAATGGAAGAACCCTACAGAGCTCACTTCC
193 ATCTCTTTTCTCTTAGAAAAACAAAGACACTTCT-CAAAGGAATAACTCTACAGAGCTCACTTCC
* *
13981514 TACGGATTTTCTTTCCTAGTTAACCCTTAATATTTTTTCCCAGAATAATTGTGCATATATACTAT
257 TACGGATTTTCTTTCC-AGTTAACACTTAATATTTTTTCCCAGAATAATTGTGCATAGATACTAT
* * * *
13981579 TCTTGGGCCGACAATTACTATTTGAATTCACATTCGACGGATTCCCAAACTGAATTTGATACTAC
321 TCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTTGATACTAC
* * * * *
13981644 TAGTCTACCAATCAATTCATATCCCAATTTCAAA-CGAAACTGACCCTCAAACTGACAATAAACT
386 TAGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCT-ACCCTCAAACTGATAATAAACT
*
13981708 AACCAGATCATTTAGAAGAATTCCACAAATC
450 ATCCAGATCATTTAGAAGAATTCCACAAATC
* * * ** * *
13981739 TTTGTTACAAAACAC-AACATGCGTAATATATCAAACAACTCAAAAAACCATATAATTCTAGAAC
1 TATGTTACAAAACACAAAAATACCCAAGATATCAAACAACTC-AAATACCATATAATTCTAGAAC
*
13981803 GAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTACACA
65 GAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACA
* *
13981868 GGCGAACACACATTGACGAACTCTTATATCTTTCATAACACTTAATACTCCCAAATTCTAAACTA
130 GGCGAACACAAACTGACGAACTCTTATATCTTTCATAACA-TTAATACTCCCAAATTCTAAACTA
* ** * * *
13981933 TCTCTTTTTTCTTAGAAATGCAAAGACAATTTTCAAAGGAATAACTCTACAGAGCTCACTTCCCA
194 TCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCTA
* *
13981998 CGAATTTTCTTTCCTAGTTAACACTTAATATTTTTTTCCCAGAATAATTGTGCATATATACTATT
259 CGGATTTTCTTTCC-AGTTAACACTTAATA-TTTTTTCCCAGAATAATTGTGCATAGATACTATT
* * * * *
13982063 CTTGAGTGGACAATTACTATTTGAATTCACATTCGACGGATTCCCAAACTGAATTTGATACTACT
322 CATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTTGATACTACT
* ** * *
13982128 AGTCTACCAATCAATTCATATCCCAGTTTCAAACAAAACTTACCCTCAAACTGATAATAAACTAA
387 AGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAATAAACTAT
13982193 CCAGATCATTTAGAAGAATTCCACAAATC
452 CCAGATCATTTAGAAGAATTCCACAAATC
* * * * * *
13982222 TTTGTTACAAAACAC-AACATGCCTAATATATCAAGCAACTCAAA-AGCCATATAATTCTAGAAC
1 TATGTTACAAAACACAAAAATACCCAAGATATCAAACAACTCAAATA-CCATATAATTCTAGAAC
* * * *
13982285 GAGATATGATACTATTCAAATATGGTGGATACAAGATAACTTAGATTTCAACCCTACATTCCACA
65 GAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACA
* *
13982350 GGCGAACACAAACTGACAAACTCTTATATCTTTCATAACTCTTAATACTCCCAAATTCTAAACTA
130 GGCGAACACAAACTGACGAACTCTTATATCTTTCATAAC-ATTAATACTCCCAAATTCTAAACTA
* * ** * * *
13982415 TCTTTTTTTTCTTAGAAATGCAAAGACATTTTTTAAAGGAATAACTCTACAGAGCTCACTTCCTA
194 TCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCTA
* * *
13982480 CGGATTTTCTTTCCTAGTTAACACTTAATATTTTTTTTCCTAGAATAATTGTGCATATATACAAT
259 CGGATTTTCTTTCC-AGTTAACACTTAATA--TTTTTTCCCAGAATAATTGTGCATAGATACTAT
* * * * * *
13982545 TCATGGGTGGAAAATTACTATTTGAAGTCACATTCGAAGGATTCCCATACTGAATTTGATAATAC
321 TCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTTGATACTAC
* * * * * * *
13982610 CAGTCTACCAATCAATTCGTATCCCAATTTCAAACCCAACTTATCCTCAAACCGATAATAAACTA
386 TAGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAATAAACTA
*
13982675 TCCAGATCATTTAGAAGAATTCCACAAAGC
451 TCCAGATCATTTAGAAGAATTCCACAAATC
* * ** *
13982705 TATGTTACAAAACCCAAAAATGCCTGAGATATCAAACAACTCAAATACCATATAATACTAGAACG
1 TATGTTACAAAACACAAAAATACCCAAGATATCAAACAACTCAAATACCATATAATTCTAGAACG
* * *
13982770 AGATATG--A-TA-T---A-A----GGATATCAGATAACTCAGATTTCAACCCTACAGTGCAGAG
66 AGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACAG
* * * *
13982823 GCGAACACAAACTGACAAACACTTATATCTTTCATAACTCTTAATACTCCTAAATTCTAAACTAT
131 GCGAACACAAACTGACGAACTCTTATATCTTTCATAAC-ATTAATACTCCCAAATTCTAAACTAT
* * * * * * * *
13982888 CTCTTTTCTCTTACAAAAACGATGACACGTATCAAAGGAATAACTCTACGGAGCTCATTTCCTAT
195 CTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCTAC
* * ** *
13982953 GAATTTTCTTTCCAAGTCAACACTTAATA-TTTTTCAGTAGAATAATTGTGCATAGATAATATTC
260 GGATTTTCTTTCC-AGTTAACACTTAATATTTTTTC-CCAGAATAATTGTGCATAGATACTATTC
* * * *
13983017 ATGGGCAGACAATTACTATCTGAAGTCACATTCGACAGATTGCCATACTGAATTTGATACTAAC-
323 ATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTTGATACT-ACT
* * *
13983081 AGTTTACCAATCAAATCATATCCTAGTTTCAAACCCAACCTACCCTCAAACTGATAATGAACTAT
387 AGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAATAAACTAT
*
13983146 CCAGATCATTTAGAAGAATTCCACACATC
452 CCAGATCATTTAGAAGAATTCCACAAATC
** * * ** * *
13983175 TGCGTTACAAACCACAAAAATACCCAAGATATCCAACAACTCAAGCACCATACAATTCTAGAATG
1 TATGTTACAAAACACAAAAATACCCAAGATATCAAACAACTCAAATACCATATAATTCTAGAACG
* *
13983240 AGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCTTACATT-CAATA
66 AGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGC-ACA
* * * *
13983304 GGCAAAGACAAACTGAC-ATACTCTTATATCTTTCATAACTATTAATACACCCAAATCCTAAACT
130 GGCGAACACAAACTGACGA-ACTCTTATATCTTTCATAAC-ATTAATACTCCCAAATTCTAAACT
* * * * * * *
13983368 TTCTCTTTTCTCTTATAAAAACAAAGACATTTCTCAAAGGAATAACTCTAAACAGCTCACTTGCA
193 ATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCT
* * * * * * *
13983433 ACGGATTTTCTTTCCAGGTCAACACTTAATATTTTCTCCCAAAAGAGTTGTCCGTAGATACTATT
258 ACGGATTTTCTTTCCA-GTTAACACTTAATATTTTTTCCCAGAATAATTGTGCATAGATACTATT
* *
13983498 CATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATGCCCATACTGAATTTGATACTACA
322 CATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTTGATACTACT
* * * * * *
13983563 AGTCAACCAATCAAATCATATCCCAGTTTCAAGCCCAACCAACACTCAAACAGATAATTAACTAT
387 AGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAATAAACTAT
* * * * *
13983628 CTAGGTCATTTAGAAGAGTTCAACAAATG
452 CCAGATCATTTAGAAGAATTCCACAAATC
** *
13983657 TATGTTACAGTACACAAAAATACCCAAGATATCAAACAACT-ACAATTCCATATAATTCTAGAAC
1 TATGTTACAAAACACAAAAATACCCAAGATATCAAACAACTCA-AATACCATATAATTCTAGAAC
* *
13983721 GAGATATGATACTATTCAGATATGCTGGATACCAGATAACTCAGATTTCAACCCTAC-TTGAACA
65 GAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACA
* * *
13983785 GGCAAACAGAAACTCTA-GAACT-TTAATATCTTTCATAACTATTAATAGC-CCCAAATTCTAAA
130 GGCGAACACAAACT-GACGAACTCTT-ATATCTTTCATAAC-ATTAATA-CTCCCAAATTCTAAA
* *
13983847 CTATCTCTTTTCTCTTATAAAAA-AAAGACACTTCTCAAAGGAATAACTTTACAGAGCTCACTTC
191 CTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTTC
* * ** * * * * *
13983911 CTACGGATTTTCATTCCAATTCAACACTTAATATATCCTT-CAAGAAGAGTTATGCAAAGATACT
256 CTACGGATTTTCTTTCCAGTT-AACACTTAATAT-TTTTTCCCAGAATAATTGTGCATAGATACT
* * * * * *
13983975 ATTCATGGGCGGAGAATTCCAATCTGAATTCACATTCGACGGATTCCCATACTAAATTTAAAAAC
319 ATTCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTT-GATAC
* * ** ** *
13984040 -ACCAGTATACCAATCAAATCATATCAAAGTTTCAAACCTTACCTACCCTCAAACTGATAATGAA
383 TACTAGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAATAAA
*
13984104 CTATCCATATCATTTAGAAGAATTCCACAAATC
448 CTATCCAGATCATTTAGAAGAATTCCACAAATC
* * * * * **
13984137 TATGCTGCAAAACACAAAAAATACACAAGATATCGAATAACTCAAATAAGATATAATTCTAGAAC
1 TATGTTACAAAACAC-AAAAATACCCAAGATATCAAACAACTCAAATACCATATAATTCTAGAAC
* * * *
13984202 GAGATATGATACTATTCAAATATGGTGGATAGCAGATAACTCAAATTTCAACCCTACATTGCATA
65 GAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACA
* ** * * *
13984267 CGCGAAGGCAAACTTACGAACTCTTATTTCTTTCATAACTATTAATACTCTCAAATTCTAAACTA
130 GGCGAACACAAACTGACGAACTCTTATATCTTTCATAAC-ATTAATACTCCCAAATTCTAAACTA
* * ** * ** * * *
13984332 TTTGTTTTCTCTTTTAAAATCGTAGATACTTCTCAAAGGAATAACTCCACAAAGCTCACTTCCTA
194 TCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCTA
* * * *
13984397 CGGATTTTCTTTCCAAGTCAACACTTAATATTTTTTCCTAGAATAGTTGTGCATAGATACAATTC
259 CGGATTTTCTTTCC-AGTTAACACTTAATATTTTTTCCCAGAATAATTGTGCATAGATACTATTC
* * * *
13984462 ATGGGCCGACAATTACTATCTGAAGTCACATTCGAAGGATT-CCAGTACTGAATTTGATACTAAT
323 ATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCA-TACTGAATTTGATACTACT
* * * * * * *
13984526 TGTCTACCAATAAAATCATTTCCCAGTTTCAAACCTAACTTATCCTCAAACTGATTATAAACTAT
387 AGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAATAAACTAT
* * * *
13984591 CGAGATCATTTAGAAGAATTCAAAAAAAC
452 CCAGATCATTTAGAAGAATTCCACAAATC
* * *
13984620 T-TCGTTACAAAACACAAAAATGCCAAAGATATCAAACAACTCAAGTACCATATAATTCTAGAAC
1 TAT-GTTACAAAACACAAAAATACCCAAGATATCAAACAACTCAAATACCATATAATTCTAGAAC
* * * ** **
13984684 GAGATATGATACTATTCAAATATGGTGGATACAAGGTAACTCAGATTTCAATACTACATAACACA
65 GAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACA
* * * * *
13984749 GGCGAGCACAAACTGAGGAACTCGTACATCTTTCATAAGTATTAATACTCCCAAATTCTAAACTA
130 GGCGAACACAAACTGACGAACTCTTATATCTTTCATAA-CATTAATACTCCCAAATTCTAAACTA
* * * * * * *
13984814 TCTATTTTCTCTTAGAAAAACAAAGATACTTCTCAATGGAATAAATCTATAGAGCTCACTTCTTG
194 TCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCTA
* * *
13984879 CGGA---T-TTT--A-TT-TC-C---A-A----GT--C--AATAA-TG-GAATAGATACTATTCA
259 CGGATTTTCTTTCCAGTTAACACTTAATATTTTTTCCCAGAATAATTGTGCATAGATACTATTCA
* * * * ** *
13984921 CGGGCGAACAATTACTATCTGATTTCATATTCGACGGATTC--C----TCTAATGA---ATTTT-
324 TGGGCGGACAA-T--TA-CT-ATCTGA-ATTC-AC--ATTCGACGGATTCCCAT-ACTGAATTTG
* * *
13984976 ATACTACCT-GTCTACCAATTAAATCATATCCCAGTTTCAAACCCAACCTACCCTCACATTGATA
379 ATACTA-CTAGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATA
* * * * * *
13985040 ACAAACTGTCCAGATCTTTTAGAAAAACTCCACACATC
443 ATAAACTATCCAGATCATTTAGAAGAATTCCACAAATC
* * * * * * *
13985078 TACGTTACAAGACAAAAAAATACCCAAGATATAAAACACCTCAAATAGCATATAATTCTAGAATG
1 TATGTTACAAAACACAAAAATACCCAAGATATCAAACAACTCAAATACCATATAATTCTAGAACG
13985143 AGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTAC-TTGCACAG
66 AGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACAG
* * * * *
13985207 GC-AACAGAAACTCTA-GAGCTTTTATATATTTCATAACTATTAATAGC-CCCAAATT-TAAACT
131 GCGAACACAAACT-GACGAACTCTTATATCTTTCATAAC-ATTAATA-CTCCCAAATTCTAAACT
* *
13985268 ATCTCTTTTCTCTTATAAAAACAAAGACACTTCTCAAAGGAATAACTTTACAGAGCTCACTTCCT
193 ATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCT
* * * * * * * * *
13985333 GCAGATTTTCTTTCCAATTCAACACTTAATATATTCTCCAAGAAGAGTTGTGCACAGATACTATT
258 ACGGATTTTCTTTCCAGTT-AACACTTAATATTTTTTCCCAGAATAATTGTGCATAGATACTATT
* * * * * * *
13985398 CATGGGAGGAGAATTACTATCTGAATTCACATTCGATGGATTCCCATAATAAATTTAAAAAC-AC
322 CATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTT-GATACTAC
* ** ** * *
13985462 CAGTCTACCAATCAAATCATATCAAAGTTTCAAACCTTACCTACCCTCAAACTGATAATGAATTA
386 TAGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAATAAACTA
* *
13985527 TTCATATCATTTAGAAGAATTCCACAAATC
451 TCCAGATCATTTAGAAGAATTCCACAAATC
** * * * *
13985557 TATGCGACAAAACACAAAAAATACACAAGATATCGAACAACTAAAATACAATATAATTCTAGAAC
1 TATGTTACAAAACAC-AAAAATACCCAAGATATCAAACAACTCAAATACCATATAATTCTAGAAC
* * *
13985622 GAGATATGATACTATTCAGATATGGTGGATAGCAGATAACTCAAATTTCAACCCTATATTGCACA
65 GAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACA
13985687 GGCGAAC
130 GGCGAAC
13985694 CGAAATTGCT
Statistics
Matches: 3358, Mismatches: 489, Indels: 216
0.83 0.12 0.05
Matches are distributed among these distances:
455 67 0.02
456 39 0.01
457 10 0.00
458 209 0.06
459 11 0.00
460 4 0.00
461 5 0.00
462 6 0.00
463 4 0.00
464 5 0.00
465 3 0.00
467 4 0.00
468 2 0.00
469 8 0.00
470 223 0.07
471 2 0.00
472 178 0.05
473 8 0.00
474 6 0.00
475 4 0.00
476 7 0.00
477 5 0.00
478 12 0.00
479 110 0.03
480 330 0.10
481 214 0.06
482 1189 0.35
483 638 0.19
484 54 0.02
485 1 0.00
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.30
Consensus pattern (480 bp):
TATGTTACAAAACACAAAAATACCCAAGATATCAAACAACTCAAATACCATATAATTCTAGAACG
AGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACAG
GCGAACACAAACTGACGAACTCTTATATCTTTCATAACATTAATACTCCCAAATTCTAAACTATC
TCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCTACG
GATTTTCTTTCCAGTTAACACTTAATATTTTTTCCCAGAATAATTGTGCATAGATACTATTCATG
GGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTTGATACTACTAGTC
TACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAATAAACTATCCAG
ATCATTTAGAAGAATTCCACAAATC
Found at i:13984330 original size:963 final size:961
Alignment explanation
Indices: 13981279--13985693 Score: 5010
Period size: 963 Copynumber: 4.6 Consensus size: 961
13981269 CATAAGACAG
* ** *
13981279 CCCAAGATATCAAATAACTCAAATACCATATAATTCTAGAACGAGATATGATACTATTTAGATAT
1 CCCAAGATATCAAACAACTCAAATAAGATATAATTCTAGAACGAGATATGATACTATTCAGATAT
* * * *
13981344 GGTGGATACCAGATAAATGAGATTTCAACCCTACAATGCACAGGCGAACA-AAACCTGACGAACT
66 GGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACAGGCGAAGACAAA-CTGACGAACT
* * * * * *
13981408 CTTATATCTTTCATAACTCTTAACACTCCCAAATTCTAAACTATCTCTTTTTTCTTAGAAATACG
130 CTTATATCTTTCATAACTATTAATACTCCCAAATTCTAAACTATCTCTTTTCTCTTATAAAAACA
* * * *
13981473 AAGACACTTTC-CAATGGAAGAACCCTACAGAGCTCACTTCCTACGGATTTTCTTTCCTAGTTAA
195 AAGACA-TTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCTACGGATTTTCTTTCC-AGTCAA
* * * * * *
13981537 CCCTTAATATTTTTTCCCAGAATAATTGTGCATATATACTATTCTTGGGCCGACAATTACTATTT
258 CACTTAATATTTTTTCCCAGAATAGTTGTGCATAGATACTATTCATGGGCGGACAATTACTATCT
* * * *
13981602 GAATTCACATTCGACGGATTCCCAAACTGAATTTGATACTACTAGTCTACCAATCAATTCATATC
323 GAATTCACATTCGAAGGATTCCCATACTGAATTTGATACTACAAGTCTACCAATCAAATCATATC
* ** * * *
13981667 CCAATTTCAAACGAAACTGACCCTCAAACTGACAATAAACTAACCAGATCATTTAGAAGAATTCC
388 CCAGTTTCAAACCCAACT-AACCTCAAACTGATAATAAACTATCCAGATCATTTAGAAGAATTCC
* * ** * * *
13981732 ACAAATCTTTGTTACAAAACAC-AACATGCGTAATATATCAAACAACTCAAAAAACCATATAATT
452 ACAAATCTATGTTACAAAACACAAAAATGCCCAAGATATCAAACAACT-ACAATACCATATAATT
13981796 CTAGAACGAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACA
516 CTAGAACGAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACA
*
13981861 TT-ACACAGGCGAACACACA-TTGACGAACTCTTATATCTTTCATAAC-ACTTAATACTCCCAAA
581 TTGACACAGGCGAACACAAACTT-ACGAACTCTTATATCTTTCATAACTA-TTAATACTCCCAAA
* ** * *
13981923 TTCTAAACTATCTCTTTTTTCTTAGAAATGCAAAGACAATTTTCAAAGGAATAACTCTACAGAGC
644 TTCTAAACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGC
* * * * * * *
13981988 TCACTTCCCACGAATTTTCTTTCCTAGTTAACACTTAATATTTTTTTCCCAGAATAATTGTGCAT
709 TCACTTCCTACGAATTTTCATTCCAAG-TAACACTTAATA-TATTTT-CAAGAAGAATTATGCAT
* * * * * *
13982053 ATATACTATTCTTGAGTGGACAATTACTATTTGAATTCACATTCGACGGATTCCCAAACTGAATT
771 AGATACTATTCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATT
* * ** *
13982118 TGATACTACTAGTCTACCAATCAATTCATATCCCAGTTTCAAACAAAACTTACCCTCAAACTGAT
836 TGATACTACCAGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGAT
* ** * *
13982183 AATAAACTAACCAGATCATTTAGAAGAATTCCACAAATCTTTGTTACAAAACAC-AACATG
901 AATAAACTATCCAGATCATTTAGAAGAATTCCACAAATCTACGTTACAAAACACAAAAATA
* * * *
13982243 CCTAATATATCAAGCAACTC-AA-AAGCCATATAATTCTAGAACGAGATATGATACTATTCAAAT
1 CCCAAGATATCAAACAACTCAAATAAG--ATATAATTCTAGAACGAGATATGATACTATTCAGAT
* * * * *
13982306 ATGGTGGATACAAGATAACTTAGATTTCAACCCTACATTCCACAGGCGAACACAAACTGACAAAC
64 ATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACAGGCGAAGACAAACTGACGAAC
* * * * **
13982371 TCTTATATCTTTCATAACTCTTAATACTCCCAAATTCTAAACTATCTTTTTTTTCTTAGAAATGC
129 TCTTATATCTTTCATAACTATTAATACTCCCAAATTCTAAACTATCTCTTTTCTCTTATAAAAAC
* * *
13982436 AAAGACATTTTTTAAAGGAATAACTCTACAGAGCTCACTTCCTACGGATTTTCTTTCCTAGTTAA
194 AAAGACATTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCTACGGATTTTCTTTCC-AGTCAA
* * * * * *
13982501 CACTTAATATTTTTTTTCCTAGAATAATTGTGCATATATACAATTCATGGGTGGAAAATTACTAT
258 CACTTAATA--TTTTTTCCCAGAATAGTTGTGCATAGATACTATTCATGGGCGGACAATTACTAT
* * * * * *
13982566 TTGAAGTCACATTCGAAGGATTCCCATACTGAATTTGATAATACCAGTCTACCAATCAATTCGTA
321 CTGAATTCACATTCGAAGGATTCCCATACTGAATTTGATACTACAAGTCTACCAATCAAATCATA
* * *
13982631 TCCCAATTTCAAACCCAACTTATCCTCAAACCGATAATAAACTATCCAGATCATTTAGAAGAATT
386 TCCCAGTTTCAAACCCAAC-TAACCTCAAACTGATAATAAACTATCCAGATCATTTAGAAGAATT
* * **
13982696 CCACAAAGCTATGTTACAAAACCCAAAAATGCCTGAGATATCAAACAACT-CAAATACCATATAA
450 CCACAAATCTATGTTACAAAACACAAAAATGCCCAAGATATCAAACAACTAC-AATACCATATAA
* *
13982760 TACTAGAACGAGATATG--A-TA-T---A-A----GGATATCAGATAACTCAGATTTCAACCCTA
514 TTCTAGAACGAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTA
* * * * * * *
13982813 CAGTG-CAGAGGCGAACACAAACTGACAAACACTTATATCTTTCATAACTCTTAATACTCCTAAA
579 CATTGACACAGGCGAACACAAACTTACGAACTCTTATATCTTTCATAACTATTAATACTCCCAAA
* * * * * *
13982877 TTCTAAACTATCTCTTTTCTCTTACAAAAACGATGACACGTATCAAAGGAATAACTCTACGGAGC
644 TTCTAAACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGC
* * * * *
13982942 TCATTTCCTATGAATTTTCTTTCCAAGTCAACACTTAATAT-TTTTCAGTAGAATAATTGTGCAT
709 TCACTTCCTACGAATTTTCATTCCAAGT-AACACTTAATATATTTTCA--AGAAGAATTATGCAT
* * * * *
13983006 AGATAATATTCATGGGCAGACAATTACTATCTGAAGTCACATTCGACAGATTGCCATACTGAATT
771 AGATACTATTCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATT
* * *
13983071 TGATACTAACAGTTTACCAATCAAATCATATCCTAGTTTCAAACCCAACCTACCCTCAAACTGAT
836 TGATACTACCAGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGAT
* * * *
13983136 AATGAACTATCCAGATCATTTAGAAGAATTCCACACATCTGCGTTACAAACCACAAAAATA
901 AATAAACTATCCAGATCATTTAGAAGAATTCCACAAATCTACGTTACAAAACACAAAAATA
* ** ** * *
13983197 CCCAAGATATCCAACAACTCAAGCACCATACAATTCTAGAATGAGATATGATACTATTCAGATAT
1 CCCAAGATATCAAACAACTCAAATAAGATATAATTCTAGAACGAGATATGATACTATTCAGATAT
* * *
13983262 GGTGGATACCAGATAACTCAGATTTCAACCTTACATT-CAATAGGCAAAGACAAACTGAC-ATAC
66 GGTGGATACCAGATAACTCAGATTTCAACCCTACATTGC-ACAGGCGAAGACAAACTGACGA-AC
* * *
13983325 TCTTATATCTTTCATAACTATTAATACACCCAAATCCTAAACTTTCTCTTTTCTCTTATAAAAAC
129 TCTTATATCTTTCATAACTATTAATACTCCCAAATTCTAAACTATCTCTTTTCTCTTATAAAAAC
* * * *
13983390 AAAGACATTTCTCAAAGGAATAACTCTAAACAGCTCACTTGCAACGGATTTTCTTTCCAGGTCAA
194 AAAGACATTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCTACGGATTTTCTTTCCA-GTCAA
* * * * *
13983455 CACTTAATATTTTCTCCCAAAAGAGTTGTCCGTAGATACTATTCATGGGCGGACAATTACTATCT
258 CACTTAATATTTTTTCCCAGAATAGTTGTGCATAGATACTATTCATGGGCGGACAATTACTATCT
* * *
13983520 GAATTCACATTCGACGGATGCCCATACTGAATTTGATACTACAAGTCAACCAATCAAATCATATC
323 GAATTCACATTCGAAGGATTCCCATACTGAATTTGATACTACAAGTCTACCAATCAAATCATATC
* * * * * * * *
13983585 CCAGTTTCAAGCCCAACCAACACTCAAACAGATAATTAACTATCTAGGTCATTTAGAAGAGTTCA
388 CCAGTTTCAAACCCAACTAAC-CTCAAACTGATAATAAACTATCCAGATCATTTAGAAGAATTCC
* ** * *
13983650 ACAAATGTATGTTACAGTACACAAAAATACCCAAGATATCAAACAACTACAATTCCATATAATTC
452 ACAAATCTATGTTACAAAACACAAAAATGCCCAAGATATCAAACAACTACAATACCATATAATTC
*
13983715 TAGAACGAGATATGATACTATTCAGATATGCTGGATACCAGATAACTCAGATTTCAACCCTAC-T
517 TAGAACGAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACAT
* *
13983779 TGA-ACAGGCAAACAGAAACTCTA-GAACT-TTAATATCTTTCATAACTATTAATAGC-CCCAAA
582 TGACACAGGCGAACACAAACT-TACGAACTCTT-ATATCTTTCATAACTATTAATA-CTCCCAAA
* *
13983840 TTCTAAACTATCTCTTTTCTCTTATAAAAA-AAAGACACTTCTCAAAGGAATAACTTTACAGAGC
644 TTCTAAACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGC
* * * * *
13983904 TCACTTCCTACGGATTTTCATTCCAATTCAACACTTAATATATCCTTCAAGAAGAGTTATGCAAA
709 TCACTTCCTACGAATTTTCATTCCAAGT-AACACTTAATATAT-TTTCAAGAAGAATTATGCATA
* * * *
13983969 GATACTATTCATGGGCGGAGAATTCCAATCTGAATTCACATTCGACGGATTCCCATACTAAATTT
772 GATACTATTCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTT
* * * ** **
13984034 AAAAAC-ACCAGTATACCAATCAAATCATATCAAAGTTTCAAACCTTACCTACCCTCAAACTGAT
837 -GATACTACCAGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGAT
* * * * *
13984098 AATGAACTATCCATATCATTTAGAAGAATTCCACAAATCTATGCTGCAAAACACAAAAAATA
901 AATAAACTATCCAGATCATTTAGAAGAATTCCACAAATCTACGTTACAAAACAC-AAAAATA
* * * *
13984160 CACAAGATATCGAATAACTCAAATAAGATATAATTCTAGAACGAGATATGATACTATTCAAATAT
1 CCCAAGATATCAAACAACTCAAATAAGATATAATTCTAGAACGAGATATGATACTATTCAGATAT
* * * * * *
13984225 GGTGGATAGCAGATAACTCAAATTTCAACCCTACATTGCATACGCGAAGGCAAACTTACGAACTC
66 GGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACAGGCGAAGACAAACTGACGAACTC
* * * * * * **
13984290 TTATTTCTTTCATAACTATTAATACTCTCAAATTCTAAACTATTTGTTTTCTCTTTTAAAATCGT
131 TTATATCTTTCATAACTATTAATACTCCCAAATTCTAAACTATCTCTTTTCTCTTATAAAAACAA
* * * *
13984355 AGATACTTCTCAAAGGAATAACTCCACAAAGCTCACTTCCTACGGATTTTCTTTCCAAGTCAACA
196 AGACATTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCTACGGATTTTCTTTCC-AGTCAACA
* * *
13984420 CTTAATATTTTTTCCTAGAATAGTTGTGCATAGATACAATTCATGGGCCGACAATTACTATCTGA
260 CTTAATATTTTTTCCCAGAATAGTTGTGCATAGATACTATTCATGGGCGGACAATTACTATCTGA
* * * *
13984485 AGTCACATTCGAAGGATT-CCAGTACTGAATTTGATACTA-ATTGTCTACCAATAAAATCATTTC
325 ATTCACATTCGAAGGATTCCCA-TACTGAATTTGATACTACA-AGTCTACCAATCAAATCATATC
* * * * *
13984548 CCAGTTTCAAACCTAACTTATCCTCAAACTGATTATAAACTATCGAGATCATTTAGAAGAATTCA
388 CCAGTTTCAAACCCAAC-TAACCTCAAACTGATAATAAACTATCCAGATCATTTAGAAGAATTCC
* * *
13984613 AAAAAACT-TCGTTACAAAACACAAAAATGCCAAAGATATCAAACAACT-CAAGTACCATATAAT
452 ACAAATCTAT-GTTACAAAACACAAAAATGCCCAAGATATCAAACAACTACAA-TACCATATAAT
* * * **
13984676 TCTAGAACGAGATATGATACTATTCAAATATGGTGGATACAAGGTAACTCAGATTTCAATACTAC
515 TCTAGAACGAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTAC
* * * * * * *
13984741 A-TAACACAGGCGAGCACAAACTGAGGAACTCGTACATCTTTCATAAGTATTAATACTCCCAAAT
580 ATTGACACAGGCGAACACAAACTTACGAACTCTTATATCTTTCATAACTATTAATACTCCCAAAT
* * * * *
13984805 TCTAAACTATCTATTTTCTCTTAGAAAAACAAAGATACTTCTCAATGGAATAAATCTATAGAGCT
645 TCTAAACTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCT
* * *
13984870 CACTTCTTGCGGATTTT-ATTTCCAAGT----C--AATA-A---T---G--G----A---ATAGA
710 CACTTCCTACGAATTTTCA-TTCCAAGTAACACTTAATATATTTTCAAGAAGAATTATGCATAGA
* * * * * *
13984912 TACTATTCACGGGCGAACAATTACTATCTGATTTCATATTCGACGGATTCCTC-TAATGAATTTT
774 TACTATTCATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCC-CATACTGAATTTG
* * * *
13984976 ATACTACCTGTCTACCAATTAAATCATATCCCAGTTTCAAACCCAACCTACCCTCACATTGATAA
838 ATACTACCAGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAA
* * * * * * * *
13985041 CAAACTGTCCAGATCTTTTAGAAAAACTCCACACATCTACGTTACAAGACAAAAAAATA
903 TAAACTATCCAGATCATTTAGAAGAATTCCACAAATCTACGTTACAAAACACAAAAATA
* * *
13985100 CCCAAGATATAAAACACCTCAAAT-AGCATATAATTCTAGAATGAGATATGATACTATTCAGATA
1 CCCAAGATATCAAACAACTCAAATAAG-ATATAATTCTAGAACGAGATATGATACTATTCAGATA
* * * *
13985164 TGGTGGATACCAGATAACTCAGATTTCAACCCTAC-TTGCACAGGC-AACAGAAACTCTA-GAGC
65 TGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACAGGCGAAGACAAACT-GACGAAC
* *
13985226 TTTTATATATTTCATAACTATTAATAGC-CCCAAATT-TAAACTATCTCTTTTCTCTTATAAAAA
129 TCTTATATCTTTCATAACTATTAATA-CTCCCAAATTCTAAACTATCTCTTTTCTCTTATAAAAA
* * * * *
13985289 CAAAGACACTTCTCAAAGGAATAACTTTACAGAGCTCACTTCCTGCAGATTTTCTTTCCAATTCA
193 CAAAGACATTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCTACGGATTTTCTTTCC-AGTCA
* * * * * * *
13985354 ACACTTAATATATTCTCCAAGAAGAGTTGTGCACAGATACTATTCATGGGAGGAGAATTACTATC
257 ACACTTAATATTTTTTCCCAGAATAGTTGTGCATAGATACTATTCATGGGCGGACAATTACTATC
* * * * * *
13985419 TGAATTCACATTCGATGGATTCCCATAATAAATTTAAAAAC-ACCAGTCTACCAATCAAATCATA
322 TGAATTCACATTCGAAGGATTCCCATACTGAATTT-GATACTACAAGTCTACCAATCAAATCATA
** * * * * * * *
13985483 TCAAAGTTTCAAACCTTACCTACCCTCAAACTGATAATGAATTATTCATATCATTTAGAAGAATT
386 TCCCAGTTTCAAACC-CAACTAACCTCAAACTGATAATAAACTATCCAGATCATTTAGAAGAATT
** * * * * *
13985548 CCACAAATCTATGCGACAAAACACAAAAAATACACAAGATATCGAACAACTAAAATACAATATAA
450 CCACAAATCTATGTTACAAAACAC-AAAAATGCCCAAGATATCAAACAACTACAATACCATATAA
* *
13985613 TTCTAGAACGAGATATGATACTATTCAGATATGGTGGATAGCAGATAACTCAAATTTCAACCCTA
514 TTCTAGAACGAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTA
*
13985678 TATTG-CACAGGCGAAC
579 CATTGACACAGGCGAAC
13985694 CGAAATTGCT
Statistics
Matches: 2946, Mismatches: 434, Indels: 168
0.83 0.12 0.05
Matches are distributed among these distances:
937 248 0.08
938 150 0.05
939 16 0.01
940 97 0.03
941 146 0.05
942 1 0.00
944 1 0.00
948 1 0.00
950 1 0.00
951 3 0.00
952 224 0.08
953 181 0.06
954 400 0.14
955 4 0.00
956 2 0.00
957 1 0.00
958 5 0.00
959 2 0.00
960 2 0.00
962 243 0.08
963 582 0.20
964 346 0.12
965 56 0.02
966 212 0.07
967 22 0.01
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.30
Consensus pattern (961 bp):
CCCAAGATATCAAACAACTCAAATAAGATATAATTCTAGAACGAGATATGATACTATTCAGATAT
GGTGGATACCAGATAACTCAGATTTCAACCCTACATTGCACAGGCGAAGACAAACTGACGAACTC
TTATATCTTTCATAACTATTAATACTCCCAAATTCTAAACTATCTCTTTTCTCTTATAAAAACAA
AGACATTTCTCAAAGGAATAACTCTACAGAGCTCACTTCCTACGGATTTTCTTTCCAGTCAACAC
TTAATATTTTTTCCCAGAATAGTTGTGCATAGATACTATTCATGGGCGGACAATTACTATCTGAA
TTCACATTCGAAGGATTCCCATACTGAATTTGATACTACAAGTCTACCAATCAAATCATATCCCA
GTTTCAAACCCAACTAACCTCAAACTGATAATAAACTATCCAGATCATTTAGAAGAATTCCACAA
ATCTATGTTACAAAACACAAAAATGCCCAAGATATCAAACAACTACAATACCATATAATTCTAGA
ACGAGATATGATACTATTCAGATATGGTGGATACCAGATAACTCAGATTTCAACCCTACATTGAC
ACAGGCGAACACAAACTTACGAACTCTTATATCTTTCATAACTATTAATACTCCCAAATTCTAAA
CTATCTCTTTTCTCTTAGAAAAACAAAGACACTTCTCAAAGGAATAACTCTACAGAGCTCACTTC
CTACGAATTTTCATTCCAAGTAACACTTAATATATTTTCAAGAAGAATTATGCATAGATACTATT
CATGGGCGGACAATTACTATCTGAATTCACATTCGACGGATTCCCATACTGAATTTGATACTACC
AGTCTACCAATCAAATCATATCCCAGTTTCAAACCCAACCTACCCTCAAACTGATAATAAACTAT
CCAGATCATTTAGAAGAATTCCACAAATCTACGTTACAAAACACAAAAATA
Found at i:13986475 original size:39 final size:39
Alignment explanation
Indices: 13986432--13986569 Score: 186
Period size: 39 Copynumber: 3.5 Consensus size: 39
13986422 ATTCACTTTT
* * *
13986432 AAGCAAATATCATATTACACATATAATCACATAACATTA
1 AAGCATATATCATATTACTCATATAATCACATAACATTC
* * *
13986471 AAGCATATATCACATTACTCATTTAATCACATATCATTC
1 AAGCATATATCATATTACTCATATAATCACATAACATTC
* *
13986510 AAGCATATATCATAATACTCATATAATCACATACCATTC
1 AAGCATATATCATATTACTCATATAATCACATAACATTC
* *
13986549 AAGCATATATCACAATACTCA
1 AAGCATATATCATATTACTCA
13986570 AAAACATGTT
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.45, C:0.22, G:0.03, T:0.30
Consensus pattern (39 bp):
AAGCATATATCATATTACTCATATAATCACATAACATTC
Found at i:13989276 original size:50 final size:50
Alignment explanation
Indices: 13989201--13989397 Score: 191
Period size: 50 Copynumber: 3.8 Consensus size: 50
13989191 TTTCTTGTAC
* * * **
13989201 TGCCAATGCCATATCCCGGATATGGTCTTACATGGGAGTTCTCATATAGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGA
* * * * * *
13989251 TGCCCATGCCATGTCCGAGACATGGTCTTAC-GGGGAACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGG-ACCTCTCATATAGA
13989301 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T--A-GA
* * *
13989357 TACCAATTCCATGTCCCAG-CATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
13989398 TTACCCAAAT
Statistics
Matches: 119, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
49 3 0.03
50 73 0.61
51 3 0.03
53 1 0.01
55 21 0.18
56 18 0.15
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGA
Found at i:13993821 original size:36 final size:36
Alignment explanation
Indices: 13993777--13993878 Score: 123
Period size: 36 Copynumber: 2.8 Consensus size: 36
13993767 ATCAACCAAA
* * *
13993777 ACACCAAATGCTCACACAAGCCAATCCCTGCGTAAC
1 ACACCAAATGCTCACACGAGCCAATCCCTCCGAAAC
* *
13993813 ACACCAAATGCTCGCATGAGCCAATCCCTCCGAAAC
1 ACACCAAATGCTCACACGAGCCAATCCCTCCGAAAC
*** *
13993849 ACACTGGATGCTCACACGAGCTAATCCCTC
1 ACACCAAATGCTCACACGAGCCAATCCCTC
13993879 TAGAACACAC
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 55 1.00
ACGTcount: A:0.32, C:0.38, G:0.14, T:0.16
Consensus pattern (36 bp):
ACACCAAATGCTCACACGAGCCAATCCCTCCGAAAC
Found at i:13993886 original size:36 final size:35
Alignment explanation
Indices: 13993784--13993924 Score: 92
Period size: 36 Copynumber: 4.0 Consensus size: 35
13993774 AAAACACCAA
* * *
13993784 ATGCTCACACA-AGCCAATCCCTGC-GTAACACACCAA
1 ATGCTCACA-AGAGCTAATCCCT-CAGAAACACACC-G
* * * * *
13993820 ATGCTCGCATGAGCCAATCCCTCCGAAACACACTGG
1 ATGCTCACAAGAGCTAATCCCTCAGAAACACAC-CG
*
13993856 ATGCTCACACGAGCTAATCCCTCTAG-AACACACCG
1 ATGCTCACAAGAGCTAATCCCTC-AGAAACACACCG
* * *
13993891 ATGCTCATAAGAGCTAGTCCAATC-GAAACACACC
1 ATGCTCACAAGAGCTAATCC-CTCAGAAACACACC
13993925 AAACAGAGAG
Statistics
Matches: 85, Mismatches: 14, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
34 1 0.01
35 27 0.32
36 56 0.66
37 1 0.01
ACGTcount: A:0.33, C:0.35, G:0.15, T:0.16
Consensus pattern (35 bp):
ATGCTCACAAGAGCTAATCCCTCAGAAACACACCG
Found at i:13999926 original size:27 final size:27
Alignment explanation
Indices: 13999891--13999951 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
13999881 AGAAAACGGG
13999891 CCGGGCCTCGGGCACCACTTTTTCGGC
1 CCGGGCCTCGGGCACCACTTTTTCGGC
13999918 CCGGGCCTCGGGCACCACTTTTTCGGC
1 CCGGGCCTCGGGCACCACTTTTTCGGC
13999945 CCGGGCC
1 CCGGGCC
13999952 CAGCCCGATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.07, C:0.43, G:0.31, T:0.20
Consensus pattern (27 bp):
CCGGGCCTCGGGCACCACTTTTTCGGC
Found at i:14000039 original size:11 final size:11
Alignment explanation
Indices: 14000025--14000127 Score: 86
Period size: 11 Copynumber: 10.4 Consensus size: 11
14000015 AATTTTTTTA
14000025 TTTTAAAATAT
1 TTTTAAAATAT
14000036 TTTTAAAATAT
1 TTTTAAAATAT
**
14000047 TTTTTTAAT-T
1 TTTTAAAATAT
*
14000057 TTTT----TAA
1 TTTTAAAATAT
14000064 TTTTAAAATAT
1 TTTTAAAATAT
14000075 TTTTAAAATAT
1 TTTTAAAATAT
14000086 TTTT-AAAT-T
1 TTTTAAAATAT
14000095 TTTT---A-A-
1 TTTTAAAATAT
14000101 TTTTAAAATAT
1 TTTTAAAATAT
14000112 TTTTAAAATACT
1 TTTTAAAATA-T
14000124 TTTT
1 TTTT
14000128 TTTTAATTTT
Statistics
Matches: 76, Mismatches: 4, Indels: 23
0.74 0.04 0.22
Matches are distributed among these distances:
6 5 0.07
7 5 0.07
9 6 0.08
10 10 0.13
11 45 0.59
12 5 0.07
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:14000050 original size:37 final size:38
Alignment explanation
Indices: 13999986--14000128 Score: 225
Period size: 38 Copynumber: 3.8 Consensus size: 38
13999976 ATTTTTTAAA
* *
13999986 ATTTTAAAATATTTTTTACATACTTTTTTAATTTTTTT
1 ATTTTAAAATATTTTTAAAATACTTTTTTAATTTTTTT
*
14000024 ATTTTAAAATATTTTTAAAATATTTTTTTAATTTTTTT
1 ATTTTAAAATATTTTTAAAATACTTTTTTAATTTTTTT
* *
14000062 AATTTTAAAATATTTTTAAAATA-TTTTTAAATTTTTTA
1 -ATTTTAAAATATTTTTAAAATACTTTTTTAATTTTTTT
14000100 ATTTTAAAATATTTTTAAAATACTTTTTT
1 ATTTTAAAATATTTTTAAAATACTTTTTT
14000129 TTTAATTTTT
Statistics
Matches: 97, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
37 22 0.23
38 53 0.55
39 22 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (38 bp):
ATTTTAAAATATTTTTAAAATACTTTTTTAATTTTTTT
Found at i:14000067 original size:28 final size:29
Alignment explanation
Indices: 14000036--14000118 Score: 93
Period size: 26 Copynumber: 3.0 Consensus size: 29
14000026 TTTAAAATAT
** *
14000036 TTTTAAAATATTTTTTTAAT-TTTTTTAA
1 TTTTAAAATATTTTTAAAATATTTTTAAA
14000064 TTTTAAAATATTTTTAAAATATTTTTAAA
1 TTTTAAAATATTTTTAAAATATTTTTAAA
* *
14000093 TTTT---TTAATTTTAAAATATTTTTAAA
1 TTTTAAAATATTTTTAAAATATTTTTAAA
14000119 ATACTTTTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 20 0.41
28 18 0.37
29 11 0.22
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (29 bp):
TTTTAAAATATTTTTAAAATATTTTTAAA
Found at i:14000130 original size:26 final size:25
Alignment explanation
Indices: 14000074--14000148 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 25
14000064 TTTTAAAATA
*
14000074 TTTTTAAAATATTTTT-AAATTTTT
1 TTTTTAAAATATTTTTAAAATCTTT
14000098 TAATTTTAAAATATTTTTAAAATACTTT
1 T--TTTTAAAATATTTTTAAAAT-CTTT
*
14000126 TTTTT-TAAT-TTTTTAAAAT-TTT
1 TTTTTAAAATATTTTTAAAATCTTT
14000148 T
1 T
14000149 AAAATAAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
22 4 0.09
24 11 0.24
25 3 0.07
26 19 0.42
27 4 0.09
28 4 0.09
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTTAAAATATTTTTAAAATCTTT
Found at i:14000148 original size:11 final size:11
Alignment explanation
Indices: 14000025--14000148 Score: 55
Period size: 11 Copynumber: 11.2 Consensus size: 11
14000015 AATTTTTTTA
*
14000025 TTTTAAAATAT
1 TTTTAAAATTT
14000036 TTTTAAAATATT
1 TTTTAAAAT-TT
*
14000048 TTTT-TAATTT
1 TTTTAAAATTT
14000058 TTTT--AA---
1 TTTTAAAATTT
*
14000064 TTTTAAAATAT
1 TTTTAAAATTT
*
14000075 TTTTAAAATAT
1 TTTTAAAATTT
*
14000086 TTTTAAATTTTTT
1 TTTTAAA--ATTT
14000099 AATTTTAAAATATT
1 --TTTTAAAAT-TT
*
14000113 TTTAAAATACTTT
1 TTTTAAA-A-TTT
**
14000126 TTTTTTAA-TT
1 TTTTAAAATTT
14000136 TTTTAAAATTT
1 TTTTAAAATTT
14000147 TT
1 TT
14000149 AAAATAAAAA
Statistics
Matches: 88, Mismatches: 11, Indels: 28
0.69 0.09 0.22
Matches are distributed among these distances:
6 4 0.05
8 2 0.02
9 2 0.02
10 14 0.16
11 34 0.39
12 12 0.14
13 10 0.11
14 3 0.03
15 7 0.08
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:14011440 original size:25 final size:25
Alignment explanation
Indices: 14011376--14011441 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
14011366 TGCTTATACA
* * *
14011376 AGCTATGAATCGATATGCTCACTCG
1 AGCTATAAATCGGTATGCTCACACG
* *
14011401 AGCTA-AAGATTGGTATGCTCTCACG
1 AGCTATAA-ATCGGTATGCTCACACG
14011426 AGCTATAAATCGGTAT
1 AGCTATAAATCGGTAT
14011442 ACTAATACGA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 1 0.03
25 30 0.91
26 2 0.06
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (25 bp):
AGCTATAAATCGGTATGCTCACACG
Found at i:14012988 original size:270 final size:270
Alignment explanation
Indices: 14012431--14013218 Score: 1242
Period size: 269 Copynumber: 2.9 Consensus size: 270
14012421 ATTAATTTAC
* ** * * *
14012431 TTTTATAACCTTTTAAAATAATACAAATTTCAATATTATAAAGCCATCATATTTCACTTTCAACA
1 TTTTATAACCTTTTAAAATATTACAAATTTCAATATTACCAAGCCATCATATTCCACTATCACCA
* * * * *
14012496 TTAGTGATCTTATTACCATATAAGGACTATTACTTTAAGGTTCTATAGTTATTTAATACCTTGAG
66 TTAGTGGTCTAATTACCACATAAGGACTCTTACTTTAAGGTTCTATAGTTATTTAATACCTTTAG
* * *
14012561 CTACTACAACTCTACTTTTGCACTTTATGTG-TTTAGTCCTTTTTACCAAATTGAGCATGTAAAC
131 CTACTAGAACTCAACTTTTGCACTTTACGTGATTTAGTCCTTTTTACCAAATTGAGCATGTAAAC
* * * *
14012625 GGTAAAATTTCTTAAGGAAAATTTTATACGGTATTACGATCATGTTGTAGGCAATAAAATAATAA
196 GGTAAAATTTTTTAACGAAAATTTTATACGGTATTACTATCATGTTGTAGGCAATAAAATAACAA
14012690 TAAAATAAAT
261 TAAAATAAAT
14012700 TTTTATAACCTTTTAAAATATTACAAATTTCAATATTACCAAGCCATCATATTCCACTATCACCA
1 TTTTATAACCTTTTAAAATATTACAAATTTCAATATTACCAAGCCATCATATTCCACTATCACCA
* * *
14012765 TTAGTGGTCTAATTACCACAGAAGGACTCTTACTTTAAGGATCTATAGTTATTTAATATCTTTAG
66 TTAGTGGTCTAATTACCACATAAGGACTCTTACTTTAAGGTTCTATAGTTATTTAATACCTTTAG
* * * *
14012830 CTACTAGAACTCAACTTTTACACTTTACGTGATATAGTCTTTTTTATCAAATTGAGCATGTAAAC
131 CTACTAGAACTCAACTTTTGCACTTTACGTGATTTAGTCCTTTTTACCAAATTGAGCATGTAAAC
*
14012895 GGTAAAATTTTTTAACGAAAATTTTATACGATATTACTATCATGTTGTAGGCAATAAAATAACAA
196 GGTAAAATTTTTTAACGAAAATTTTATACGGTATTACTATCATGTTGTAGGCAATAAAATAACAA
14012960 TAAAATAAAT
261 TAAAATAAAT
* * *
14012970 TTTTATAACCTTTTAAAATATT-CAATTTTCAGTATTACCAAGCCATCATATTCCACTATCACAA
1 TTTTATAACCTTTTAAAATATTACAAATTTCAATATTACCAAGCCATCATATTCCACTATCACCA
14013034 TTAGTGGTCTAATTACCACATAAGGACTCTTACTTTAAGGTTCTATAGTTATTTAATACCTTTAG
66 TTAGTGGTCTAATTACCACATAAGGACTCTTACTTTAAGGTTCTATAGTTATTTAATACCTTTAG
* *
14013099 CTACTAGAACTCAACTTTTGCAC-TTACGTGATTTAGTCCTTTTCAGCAAATTGAGCATGTAAAC
131 CTACTAGAACTCAACTTTTGCACTTTACGTGATTTAGTCCTTTTTACCAAATTGAGCATGTAAAC
* * *
14013163 GGTAAAA-TTTTTAACGAAAATTTTATATGGTATGACTATCATGTTGTTGGCAATAA
196 GGTAAAATTTTTTAACGAAAATTTTATACGGTATTACTATCATGTTGTAGGCAATAA
14013219 CGTAGTGATA
Statistics
Matches: 477, Mismatches: 41, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
267 45 0.09
268 44 0.09
269 266 0.56
270 122 0.26
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (270 bp):
TTTTATAACCTTTTAAAATATTACAAATTTCAATATTACCAAGCCATCATATTCCACTATCACCA
TTAGTGGTCTAATTACCACATAAGGACTCTTACTTTAAGGTTCTATAGTTATTTAATACCTTTAG
CTACTAGAACTCAACTTTTGCACTTTACGTGATTTAGTCCTTTTTACCAAATTGAGCATGTAAAC
GGTAAAATTTTTTAACGAAAATTTTATACGGTATTACTATCATGTTGTAGGCAATAAAATAACAA
TAAAATAAAT
Found at i:14015047 original size:11 final size:11
Alignment explanation
Indices: 14015033--14015062 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
14015023 TAAAAAATCA
14015033 AAAAAAAATTG
1 AAAAAAAATTG
*
14015044 AAAAACAATTG
1 AAAAAAAATTG
14015055 AAAAAAAA
1 AAAAAAAA
14015063 GTGATTGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.07, T:0.13
Consensus pattern (11 bp):
AAAAAAAATTG
Found at i:14033871 original size:20 final size:20
Alignment explanation
Indices: 14033848--14033943 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
14033838 TCTTCAATTT
*
14033848 TGGTGGCTTGTCCATAATAC
1 TGGTGGCTTGTCCACAATAC
* * *
14033868 TGGTAGCTTGTCTACATTAC
1 TGGTGGCTTGTCCACAATAC
* * *
14033888 TGGTGGCCTGTCCACATTAT
1 TGGTGGCTTGTCCACAATAC
* * * *
14033908 TGTTAGCTCGTCTACAATAC
1 TGGTGGCTTGTCCACAATAC
* *
14033928 TAGTGGCATGTCCACA
1 TGGTGGCTTGTCCACA
14033944 TTTCTGGCAG
Statistics
Matches: 55, Mismatches: 21, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (20 bp):
TGGTGGCTTGTCCACAATAC
Found at i:14033892 original size:40 final size:40
Alignment explanation
Indices: 14033848--14033943 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
14033838 TCTTCAATTT
* * * *
14033848 TGGTGGCTTGTCCATAATACTGGTAGCTTGTCTACATTAC
1 TGGTGGCATGTCCACAATACTGGTAGCTCGTCTACAATAC
* * * *
14033888 TGGTGGCCTGTCCACATTATTGTTAGCTCGTCTACAATAC
1 TGGTGGCATGTCCACAATACTGGTAGCTCGTCTACAATAC
*
14033928 TAGTGGCATGTCCACA
1 TGGTGGCATGTCCACA
14033944 TTTCTGGCAG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (40 bp):
TGGTGGCATGTCCACAATACTGGTAGCTCGTCTACAATAC
Found at i:14036480 original size:16 final size:16
Alignment explanation
Indices: 14036459--14036489 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14036449 CTCATATATG
14036459 TTCATAATTTCACAAT
1 TTCATAATTTCACAAT
14036475 TTCATAATTTCACAA
1 TTCATAATTTCACAA
14036490 GCATACATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (16 bp):
TTCATAATTTCACAAT
Found at i:14037005 original size:309 final size:320
Alignment explanation
Indices: 14036317--14037631 Score: 1893
Period size: 335 Copynumber: 4.0 Consensus size: 320
14036307 TTCACATCAT
* *
14036317 TAGCACATTATAAACACTTTCATAAGGCATGAATAACATACCCACATATTTACTGTCACATGGCA
1 TAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTATCACATGGCA
14036382 TGGACAACACACCCTCATATTCACTTTCAAATCAGTCATCATAAGCTTATAACATATGTCATAGC
66 TGGACAACACACCCTCATATTCA---TC--AT-A-T-ATCATAAGC-----ACA-ATGTCA-AGC
14036447 ATCTCATATATGTTCATAATTTCACAATTTCATAATTTCACAAGCATACATATATCACATTTAAT
116 ATCTCATATATGTTCATAATTTCACAATTTCATAATTTCACAAGCATACATATATCACATTTAAT
* *
14036512 CATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTTCCTCTAAATATTCC
181 CATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCC
* *
14036577 CAATATACAATGAATCATGTACAAGTAGTGATTCCAAAACACTCACCAGAAATACACTTTCGCCA
246 CAATACACAATGAATCATCTACAAGTAGTGATTCCAAAACACTCACCAGAAATACACTTTCGCCA
14036642 AAATTTAGAG
311 AAATTTAGAG
14036652 TAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTATCACATGGCA
1 TAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTATCACATGGCA
14036717 TGGGA-AACACACCCTCATATTCA-C-T-T-TCA-AA-C-C-A-GTC-A-CATCTCATATATGTT
66 T-GGACAACACACCCTCATATTCATCATATATCATAAGCACAATGTCAAGCATCTCATATATGTT
*
14036770 CATAATTTCACAATTTCCA-AATTTCACAAGCATACATATATCACACTTAATCATAGGCGTGACA
130 CATAATTTCACAATTT-CATAATTTCACAAGCATACATATATCACATTTAATCATAGGCGTGACA
14036834 ACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCCCAATACACAATGA
194 ACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCCCAATACACAATGA
*
14036899 ATCATCTACAAGTAGTGATTCCAAAACACGCACCAGAAATACACTTTCGCCAAAATTTAGAG
259 ATCATCTACAAGTAGTGATTCCAAAACACTCACCAGAAATACACTTTCGCCAAAATTTAGAG
14036961 TAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTATCACATGGCA
1 TAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTATCACATGGCA
14037026 TGGACAACACACCCTCATATTCACTTTCAAATTAGTCATCATAAGCTTATAACATATGTCATAGC
66 TGGACAACACACCCTCATATTCA---TC--A-TA-T-ATCATAAGC-----ACA-ATGTCA-AGC
* * *
14037091 ATCTCATTTATGTTTATAATTTCACAATTTCATAATTTCAAAAGCATACATATATCACATTTAAT
116 ATCTCATATATGTTCATAATTTCACAATTTCATAATTTCACAAGCATACATATATCACATTTAAT
14037156 CATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCC
181 CATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCC
14037221 CAATACACAAT-AAGTCATCTACAAGTAGTGATTCCAAAACACTCACCAGAAATACACTTTCGCC
246 CAATACACAATGAA-TCATCTACAAGTAGTGATTCCAAAACACTCACCAGAAATACACTTTCGCC
14037285 AAAATTTAGAG
310 AAAATTTAGAG
14037296 TAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTATCACATGGCA
1 TAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTATCACATGGCA
14037361 TGGACAACACACCCTCATATTCACTTTCAAATCAGTCATCATAAGCTTATAACATATGTCATAGC
66 TGGACAACACACCCTCATATTCA---TC--AT-A-T-ATCATAAGC-----ACA-ATGTCA-AGC
*
14037426 ATCTCATATACGTTCATAATTTCACAATTTCATAATTTCATAATTTCACAAGCATACATATATCA
116 ATCTCATATATGTTCATAATTT--C-A---C--AATTTCATAATTTCACAAGCATACATATATCA
*
14037491 CATTTAATCATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAATCTACCTCTA
173 CATTTAATCATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTA
*
14037556 AAAATTCCCAATACACAATGAATCATCTACAAGTTGTGATTCCAAAACACTCACCAGAAATACAC
238 AAAATTCCCAATACACAATGAATCATCTACAAGTAGTGATTCCAAAACACTCACCAGAAATACAC
*
14037621 TTTTGCCAAAA
303 TTTCGCCAAAA
14037632 AGCTGAAAGC
Statistics
Matches: 919, Mismatches: 20, Indels: 74
0.91 0.02 0.07
Matches are distributed among these distances:
308 3 0.00
309 281 0.31
310 3 0.00
312 3 0.00
313 2 0.00
315 1 0.00
317 1 0.00
319 1 0.00
321 4 0.00
322 4 0.00
323 4 0.00
325 1 0.00
328 1 0.00
329 1 0.00
331 2 0.00
332 3 0.00
334 6 0.01
335 424 0.46
336 3 0.00
337 1 0.00
338 1 0.00
341 1 0.00
343 166 0.18
344 2 0.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (320 bp):
TAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTATCACATGGCA
TGGACAACACACCCTCATATTCATCATATATCATAAGCACAATGTCAAGCATCTCATATATGTTC
ATAATTTCACAATTTCATAATTTCACAAGCATACATATATCACATTTAATCATAGGCGTGACAAC
ACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCCCAATACACAATGAAT
CATCTACAAGTAGTGATTCCAAAACACTCACCAGAAATACACTTTCGCCAAAATTTAGAG
Found at i:14037306 original size:644 final size:657
Alignment explanation
Indices: 14036317--14037631 Score: 2174
Period size: 644 Copynumber: 2.0 Consensus size: 657
14036307 TTCACATCAT
* *
14036317 TAGCACATTATAAACACTTTCATAAGGCATGAATAACATACCCACATATTTACTGTCACATGGCA
1 TAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTATCACATGGCA
14036382 TGGACAACACACCCTCATATTCACTTTCAAATCAGTCATCATAAGCTTATAACATATGTCATAGC
66 TGGACAACACACCCTCATATTCACTTTCAAATCAGTCATCATAAGCTTATAACATATGTCATAGC
*
14036447 ATCTCATATATGTTCATAATTTCACAATTTCATAATTTCACAAGCATACATATATCACATTTAAT
131 ATCTCATATATGTTCATAATTTCACAATTTCATAATTTCAAAAGCATACATATATCACATTTAAT
* *
14036512 CATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTTCCTCTAAATATTCC
196 CATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCC
* *
14036577 CAATATACAATGAATCATGTACAAGTAGTGATTCCAAAACACTCACCAGAAATACACTTTCGCCA
261 CAATACACAATGAATCATCTACAAGTAGTGATTCCAAAACACTCACCAGAAATACACTTTCGCCA
14036642 AAATTTAGAGTAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTA
326 AAATTTAGAGTAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTA
14036707 TCACATGGCATGGGA-AACACACCCTCATATTCA-C-T-T-TCA-AA-C-C-A-GTC-A-CATCT
391 TCACATGGCAT-GGACAACACACCCTCATATTCATCATATATCATAAGCACAATGTCAAGCATCT
*
14036760 CATATATGTTCATAATTTCACAATTTC-CA-AATTTCACAAGCATACATATATCACACTTAATCA
455 CATATACGTTCATAATTTCACAATTTCTCATAATTTCACAAGCATACATATATCACACTTAATCA
14036823 TAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCCCA
520 TAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCCCA
14036888 ATACACAATGAATCATCTACAAGTAGTGATTCCAAAACACGCACCAGAAATACACTTTCGCCAAA
585 ATACACAATGAATCATCTACAAGTAGTGATTCCAAAACACGCACCAGAAATACACTTTCGCCAAA
14036953 ATTTAGAG
650 ATTTAGAG
14036961 TAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTATCACATGGCA
1 TAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTATCACATGGCA
*
14037026 TGGACAACACACCCTCATATTCACTTTCAAATTAGTCATCATAAGCTTATAACATATGTCATAGC
66 TGGACAACACACCCTCATATTCACTTTCAAATCAGTCATCATAAGCTTATAACATATGTCATAGC
* *
14037091 ATCTCATTTATGTTTATAATTTCACAATTTCATAATTTCAAAAGCATACATATATCACATTTAAT
131 ATCTCATATATGTTCATAATTTCACAATTTCATAATTTCAAAAGCATACATATATCACATTTAAT
14037156 CATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCC
196 CATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCC
14037221 CAATACACAAT-AAGTCATCTACAAGTAGTGATTCCAAAACACTCACCAGAAATACACTTTCGCC
261 CAATACACAATGAA-TCATCTACAAGTAGTGATTCCAAAACACTCACCAGAAATACACTTTCGCC
14037285 AAAATTTAGAGTAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACT
325 AAAATTTAGAGTAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACT
14037350 ATCACATGGCATGGACAACACACCCTCATATTCACTTTCAAATCAGTCATCATAAGCTTATAACA
390 ATCACATGGCATGGACAACACACCCTCATATTCA---TC--AT-A-T-ATCATAAGC-----ACA
14037415 TATGTCATAGCATCTCATATACGTTCATAATTTCACAATTTCATAATTTCATAATTTCACAAGCA
442 -ATGTCA-AGCATCTCATATACGTTCATAATTTCACAATTTC------TCATAATTTCACAAGCA
*
14037480 TACATATATCACATTTAATCATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTA
499 TACATATATCACACTTAATCATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTA
* * *
14037545 ATCTACCTCTAAAAATTCCCAATACACAATGAATCATCTACAAGTTGTGATTCCAAAACACTCAC
564 AGCTACCTCTAAAAATTCCCAATACACAATGAATCATCTACAAGTAGTGATTCCAAAACACGCAC
*
14037610 CAGAAATACACTTTTGCCAAAA
629 CAGAAATACACTTTCGCCAAAA
14037632 AGCTGAAAGC
Statistics
Matches: 619, Mismatches: 16, Indels: 38
0.92 0.02 0.06
Matches are distributed among these distances:
643 5 0.01
644 406 0.66
648 1 0.00
651 1 0.00
654 1 0.00
656 3 0.00
657 2 0.00
658 1 0.00
664 1 0.00
666 1 0.00
667 3 0.00
669 1 0.00
670 31 0.05
677 2 0.00
678 160 0.26
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (657 bp):
TAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTATCACATGGCA
TGGACAACACACCCTCATATTCACTTTCAAATCAGTCATCATAAGCTTATAACATATGTCATAGC
ATCTCATATATGTTCATAATTTCACAATTTCATAATTTCAAAAGCATACATATATCACATTTAAT
CATAGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCC
CAATACACAATGAATCATCTACAAGTAGTGATTCCAAAACACTCACCAGAAATACACTTTCGCCA
AAATTTAGAGTAGCACATTATAAACACTTTCACAAGGCATGAATAACATACCCACATATTTACTA
TCACATGGCATGGACAACACACCCTCATATTCATCATATATCATAAGCACAATGTCAAGCATCTC
ATATACGTTCATAATTTCACAATTTCTCATAATTTCACAAGCATACATATATCACACTTAATCAT
AGGCGTGACAACACTTACTCTCAAAATTTAGAGTAGGAGTTTAAGCTACCTCTAAAAATTCCCAA
TACACAATGAATCATCTACAAGTAGTGATTCCAAAACACGCACCAGAAATACACTTTCGCCAAAA
TTTAGAG
Found at i:14037454 original size:8 final size:8
Alignment explanation
Indices: 14037438--14037473 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
14037428 CTCATATACG
14037438 TTCATAAT
1 TTCATAAT
*
14037446 TTCACAAT
1 TTCATAAT
14037454 TTCATAAT
1 TTCATAAT
14037462 TTCATAAT
1 TTCATAAT
14037470 TTCA
1 TTCA
14037474 CAAGCATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.36, C:0.17, G:0.00, T:0.47
Consensus pattern (8 bp):
TTCATAAT
Found at i:14038831 original size:19 final size:19
Alignment explanation
Indices: 14038809--14038846 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14038799 TCAATCATCC
14038809 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
14038828 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
14038847 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:14049779 original size:15 final size:16
Alignment explanation
Indices: 14049738--14049782 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
14049728 ATTATCTTAA
14049738 ATTATGAATATGTGTGT
1 ATTATG-ATATGTGTGT
* *
14049755 ATTGTGATATGTGTTT
1 ATTATGATATGTGTGT
14049771 A-TATGATATGTG
1 ATTATGATATGTG
14049783 ACCATATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 10 0.40
16 10 0.40
17 5 0.20
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (16 bp):
ATTATGATATGTGTGT
Found at i:14049860 original size:39 final size:39
Alignment explanation
Indices: 14049817--14049973 Score: 172
Period size: 39 Copynumber: 3.9 Consensus size: 39
14049807 AACATGTTTT
*
14049817 TTAGTATTGTGATATATGCTTGAATGCTAAGTGATTATA
1 TTAGTATTGTGATATATGCTTGAATGTTAAGTGATTATA
* * *
14049856 TTAGTATTATGATATATGTTTGAATGTTACGTGATTATA
1 TTAGTATTGTGATATATGCTTGAATGTTAAGTGATTATA
* * * *
14049895 TAAGAATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TTAGTATTGTGATATATGCTTGAATGTTAAGTGATTATA
* * *
14049934 TGT-GTAATGTGATATATATGCTTAAAAGTTAATGTGATTA
1 T-TAGTATTGTG--ATATATGCTTGAATGTTAA-GTGATTA
14049974 CCATGTAAAT
Statistics
Matches: 99, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 75 0.76
41 17 0.17
42 7 0.07
ACGTcount: A:0.33, C:0.03, G:0.19, T:0.45
Consensus pattern (39 bp):
TTAGTATTGTGATATATGCTTGAATGTTAAGTGATTATA
Found at i:14064968 original size:50 final size:50
Alignment explanation
Indices: 14064914--14065105 Score: 181
Period size: 50 Copynumber: 3.9 Consensus size: 50
14064904 GCAGTGGAAC
** *
14064914 AGATTGAAGCTATGATGGCGAATCTCGCTTCCCCGACATTGCAGTCAAAT
1 AGATTGAAGCTACAACGGCGAATCTCGCTTCCCCGACATTGCAGTCAAAT
** * ** * * * * **
14064964 AGATTGAAGCTACAATAGCGAATCACATTTCCCTGGCAGTACAGTGGAAT
1 AGATTGAAGCTACAACGGCGAATCTCGCTTCCCCGACATTGCAGTCAAAT
* * * *
14065014 AGATTGAAGCTACGACGGCGAATCTTGCTTCCCCGACATTGCAATTAAA-
1 AGATTGAAGCTACAACGGCGAATCTCGCTTCCCCGACATTGCAGTCAAAT
* *
14065063 AGATTGAGGCCACAACGGCGAATCTTC-CTTCCCCGACATTGCA
1 AGATTGAAGCTACAACGGCGAATC-TCGCTTCCCCGACATTGCA
14065106 ATCTCATTTC
Statistics
Matches: 111, Mismatches: 30, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
49 37 0.33
50 74 0.67
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGAATCTCGCTTCCCCGACATTGCAGTCAAAT
Found at i:14065081 original size:49 final size:49
Alignment explanation
Indices: 14065014--14065107 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
14065004 ACAGTGGAAT
* * *
14065014 AGATTGAAGCTACGACGGCGAATCTTGCTTCCCCGACATTGCAATTAAA
1 AGATTGAAGCCACAACGGCGAATCTTCCTTCCCCGACATTGCAATTAAA
*
14065063 AGATTGAGGCCACAACGGCGAATCTTCCTTCCCCGACATTGCAAT
1 AGATTGAAGCCACAACGGCGAATCTTCCTTCCCCGACATTGCAAT
14065108 CTCATTTCCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (49 bp):
AGATTGAAGCCACAACGGCGAATCTTCCTTCCCCGACATTGCAATTAAA
Found at i:14065207 original size:49 final size:50
Alignment explanation
Indices: 14065124--14065239 Score: 128
Period size: 49 Copynumber: 2.3 Consensus size: 50
14065114 TCCCTAGCGG
* ** * *
14065124 TGCAG-TGCAACAGATTGAAGCTACGATGGCGAATCTCGCTTCCCCGACAT
1 TGCAGTTG-AACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCAACAT
* * * *
14065174 TGCGGTT-AATAGATTGAAGCTACAACAGTGAATCTTACTTCCCCAACAT
1 TGCAGTTGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCAACAT
14065223 TGCAGTTGAACAGATTG
1 TGCAGTTGAACAGATTG
14065240 GAGATGGCAG
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
49 40 0.75
50 12 0.23
51 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCAGTTGAACAGATTGAAGCTACAACAGCGAATCTCACTTCCCCAACAT
Found at i:14065207 original size:121 final size:121
Alignment explanation
Indices: 14064984--14065226 Score: 333
Period size: 121 Copynumber: 2.0 Consensus size: 121
14064974 TACAATAGCG
* * * *
14064984 AATCACATTTCCCTGGCAGTACAGTGGAATAGATTGAAGCTACGACGGCGAATCTTGCTTCCCCG
1 AATCACATTTCCCTAGCAGTACAGTGCAACAGATTGAAGCTACGACGGCGAATCTCGCTTCCCCG
* * * *
14065049 ACATTGCAATTAAAAGATTGAGGCCACAACGGCGAATCTTCCTTCCCCGACATTGC
66 ACATTGCAATTAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCCAACATTGC
* * * *
14065105 AATCTCATTTCCCTAGCGGTGCAGTGCAACAGATTGAAGCTACGATGGCGAATCTCGCTTCCCCG
1 AATCACATTTCCCTAGCAGTACAGTGCAACAGATTGAAGCTACGACGGCGAATCTCGCTTCCCCG
** * * *
14065170 ACATTGCGGTTAATAGATTGAAGCTACAACAGTGAATCTTACTTCCCCAACATTGC
66 ACATTGCAATTAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCCAACATTGC
14065226 A
1 A
14065227 GTTGAACAGA
Statistics
Matches: 105, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
121 105 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (121 bp):
AATCACATTTCCCTAGCAGTACAGTGCAACAGATTGAAGCTACGACGGCGAATCTCGCTTCCCCG
ACATTGCAATTAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCCAACATTGC
Found at i:14067992 original size:13 final size:13
Alignment explanation
Indices: 14067974--14068004 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
14067964 CAACAATACC
14067974 AATAATTCAAATA
1 AATAATTCAAATA
*
14067987 AATAATTCAAATC
1 AATAATTCAAATA
14068000 AATAA
1 AATAA
14068005 ACAGACGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (13 bp):
AATAATTCAAATA
Found at i:14075824 original size:21 final size:22
Alignment explanation
Indices: 14075779--14075824 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
14075769 ATGCTACGAT
* * *
14075779 AAAAAATAATTTAAAAATTATA
1 AAAAAATAATTCAAAAAATACA
14075801 AAAAAAT-ATTCAAAAAATACA
1 AAAAAATAATTCAAAAAATACA
14075822 AAA
1 AAA
14075825 TTCAAAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (22 bp):
AAAAAATAATTCAAAAAATACA
Found at i:14077482 original size:17 final size:18
Alignment explanation
Indices: 14077451--14077490 Score: 73
Period size: 17 Copynumber: 2.3 Consensus size: 18
14077441 CATATACATG
14077451 CATACATTTTATAATACA
1 CATACATTTTATAATACA
14077469 CATACATTTT-TAATACA
1 CATACATTTTATAATACA
14077486 CATAC
1 CATAC
14077491 TTATACATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (18 bp):
CATACATTTTATAATACA
Found at i:14077727 original size:20 final size:19
Alignment explanation
Indices: 14077677--14077730 Score: 54
Period size: 22 Copynumber: 2.6 Consensus size: 19
14077667 TATGTACATG
*
14077677 TATACATATATTTTTTATA
1 TATACATATATATTTTATA
*
14077696 TAATATTGATATATATTTTATGA
1 T-ATA--CATATATATTTTAT-A
14077719 TATACATATATA
1 TATACATATATA
14077731 CACATTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 1 0.04
20 10 0.36
22 15 0.54
23 2 0.07
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52
Consensus pattern (19 bp):
TATACATATATATTTTATA
Found at i:14078300 original size:105 final size:106
Alignment explanation
Indices: 14078030--14078334 Score: 432
Period size: 108 Copynumber: 2.9 Consensus size: 106
14078020 AAATTTTTCT
* *
14078030 AAATAAGGCAATGTTATGCGTTTGGAAAATCGAGAAAACGTACCCTAACGTGCTGGGTTTCGATT
1 AAATAAGGCAATATT-TGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATT
* * *
14078095 TCTTGTTCGACCGAAATAGCCAAATATCCTTTTTAAACTTTTA
65 TCTCGTTTGACC-AAATAGCCAAATATCCTTTTTAAAATTTTA
* * * *
14078138 AAATAAGGCAATATTTCGCGTTTGGAAAATCAAGAAAACGTGCCCTAACATGTTGGGTTTCGACT
1 AAATAAGGCAATATTT-GCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATT
14078203 TCTCGTTTGACCAAATAGCCAAATATCC-TTTTAAAATTTTA
65 TCTCGTTTGACCAAATAGCCAAATATCCTTTTTAAAATTTTA
* * * * * * *
14078244 AAGTGAGGCAATATTTGCGTTTGGAAATTTGAGAGAACGTGCCCTAACGTGCTGGGTCTCAATTT
1 AAATAAGGCAATATTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTT
14078309 CTCGTTTGACCAAATAGCCAAATATC
66 CTCGTTTGACCAAATAGCCAAATATC
14078335 TTCTTAACTT
Statistics
Matches: 176, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
105 66 0.38
106 26 0.15
107 17 0.10
108 67 0.38
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.31
Consensus pattern (106 bp):
AAATAAGGCAATATTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTT
CTCGTTTGACCAAATAGCCAAATATCCTTTTTAAAATTTTA
Found at i:14094202 original size:38 final size:37
Alignment explanation
Indices: 14094149--14094239 Score: 121
Period size: 38 Copynumber: 2.4 Consensus size: 37
14094139 TCACATTGGG
*
14094149 CATGTTGAACATGCAAATCGAATAATATCATGTAGAG-
1 CATGTTTAACATGCAAATCGAATAATATCATGTAG-GC
* * *
14094186 CATGTTTTACCATGCAAATCGGATTATATCATGTAGGC
1 CATG-TTTAACATGCAAATCGAATAATATCATGTAGGC
14094224 CATGTTTAACATGCAA
1 CATGTTTAACATGCAA
14094240 TCTAATCTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
37 16 0.34
38 31 0.66
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (37 bp):
CATGTTTAACATGCAAATCGAATAATATCATGTAGGC
Found at i:14100200 original size:19 final size:18
Alignment explanation
Indices: 14100179--14100225 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
14100169 TTAAACATAA
14100179 AAAAATAAAATTAACATT
1 AAAAATAAAATTAACATT
14100197 AAAAATAGAAATTAA-AGTT
1 AAAAATA-AAATTAACA-TT
14100216 AAAAATAAAA
1 AAAAATAAAA
14100226 ATTTTAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.23
Consensus pattern (18 bp):
AAAAATAAAATTAACATT
Found at i:14110490 original size:7 final size:7
Alignment explanation
Indices: 14110480--14110510 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
14110470 ATAAATCACA
14110480 AATAAAG
1 AATAAAG
14110487 AATAAAG
1 AATAAAG
14110494 AATAAAG
1 AATAAAG
14110501 AATAAAG
1 AATAAAG
14110508 AAT
1 AAT
14110511 CAATTAGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.16
Consensus pattern (7 bp):
AATAAAG
Found at i:14117120 original size:15 final size:15
Alignment explanation
Indices: 14117100--14117151 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
14117090 AGTACAAAAC
14117100 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
14117115 ATTTATAATTTTAATAAAT
1 ATTTAT--TATTAAT--AT
*
14117134 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
14117149 ATT
1 ATT
14117152 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
17 11 0.37
19 8 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:14117280 original size:16 final size:16
Alignment explanation
Indices: 14117239--14117273 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14117229 TGAAATATTA
*
14117239 AATAACTTATTAAAAT
1 AATAAATTATTAAAAT
*
14117255 AATAAATTATTAATAT
1 AATAAATTATTAAAAT
14117271 AAT
1 AAT
14117274 TTATTATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
AATAAATTATTAAAAT
Found at i:14117683 original size:4 final size:4
Alignment explanation
Indices: 14117674--14117698 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
14117664 TTTTCAAACT
14117674 TTAA TTAA TTAA TTAA TTAA TTAA T
1 TTAA TTAA TTAA TTAA TTAA TTAA T
14117699 ATTTCAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Done.