Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 50 of 150
Found at i:14716221 original size:12 final size:12
Alignment explanation
Indices: 14716204--14716228 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14716194 CTCTTTGCAT
14716204 AATTTCTTCACA
1 AATTTCTTCACA
14716216 AATTTCTTCACA
1 AATTTCTTCACA
14716228 A
1 A
14716229 CAATAGATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (12 bp):
AATTTCTTCACA
Found at i:14722248 original size:50 final size:51
Alignment explanation
Indices: 14722151--14722248 Score: 121
Period size: 51 Copynumber: 1.9 Consensus size: 51
14722141 CAAAAACCCG
* * *
14722151 TCTAAAGTAACCTTAAAAAAGTTAAGATAGGCTTTGTCTAAGGCAACCCCA
1 TCTAAAGCAACCTTAAAAAAGTTAAGATAGCCTTTGTCTAAGACAACCCCA
*
14722202 TCTAAAGCAACCTTAAAAAA-TTTAGAATAGCCTTAT-T-TAAGACAACC
1 TCTAAAGCAACCTTAAAAAAGTTAAG-ATAGCCTT-TGTCTAAGACAACC
14722249 TTAAAAGGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
50 13 0.32
51 27 0.66
52 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (51 bp):
TCTAAAGCAACCTTAAAAAAGTTAAGATAGCCTTTGTCTAAGACAACCCCA
Found at i:14722319 original size:36 final size:36
Alignment explanation
Indices: 14722279--14722363 Score: 91
Period size: 36 Copynumber: 2.4 Consensus size: 36
14722269 TCGTCTAAGG
* *
14722279 CAATCTTAAAAAAGTTGAGA-TAGATATTGTCTAAAA
1 CAATCTTAAAAAAGTT-AGACTAGACATTATCTAAAA
* * * *
14722315 CAATCCTAAAAAGGTTAGACTAGACATTATTTAAGA
1 CAATCTTAAAAAAGTTAGACTAGACATTATCTAAAA
*
14722351 CAACCTTAAAAAA
1 CAATCTTAAAAAA
14722364 AAGAGTTAAA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
35 3 0.08
36 36 0.92
ACGTcount: A:0.48, C:0.13, G:0.12, T:0.27
Consensus pattern (36 bp):
CAATCTTAAAAAAGTTAGACTAGACATTATCTAAAA
Found at i:14722425 original size:36 final size:36
Alignment explanation
Indices: 14722385--14722472 Score: 108
Period size: 36 Copynumber: 2.4 Consensus size: 36
14722375 AAAACACGTT
* **
14722385 TAAGATAACCTTAAAAAA-ATT-AAGATAAACCTTGTC
1 TAAGAAAACCTTAAAAAAGATTGAA-ATAAACC-CATC
*
14722421 TAAGACAACCTTAAAAAAGATTGAAATAAACCCATC
1 TAAGAAAACCTTAAAAAAGATTGAAATAAACCCATC
14722457 TAAGAAAACCTTAAAA
1 TAAGAAAACCTTAAAA
14722473 GGGTTGGATA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
36 34 0.74
37 10 0.22
38 2 0.04
ACGTcount: A:0.53, C:0.16, G:0.08, T:0.23
Consensus pattern (36 bp):
TAAGAAAACCTTAAAAAAGATTGAAATAAACCCATC
Found at i:14727733 original size:46 final size:45
Alignment explanation
Indices: 14727663--14727801 Score: 208
Period size: 46 Copynumber: 3.0 Consensus size: 45
14727653 ACAATGCTAT
*
14727663 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTT-ACTGAAATACCATACCTACTTCTCAC
*
14727709 AACTCAGTATGGTTTTCGTTACTGAAATATCATACCTACTTCTCAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACTTCTCAC
*
14727755 AACTCAGTATGGTTTTCTTTACTAAAATACCATACCTACATTC-CAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTAC-TTCTCAC
14727801 A
1 A
14727802 CTTTGCCATG
Statistics
Matches: 86, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
46 81 0.94
47 5 0.06
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (45 bp):
AACTCAGTATGGTTTTCTTACTGAAATACCATACCTACTTCTCAC
Found at i:14728051 original size:21 final size:20
Alignment explanation
Indices: 14728025--14728064 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 20
14728015 AATAAACACC
14728025 AAAAAGTTATTTTAAAAATAA
1 AAAAAG-TATTTTAAAAATAA
14728046 AAAAAGTATTTTAAAAATA
1 AAAAAGTATTTTAAAAATA
14728065 TTTTAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
AAAAAGTATTTTAAAAATAA
Found at i:14730219 original size:7 final size:6
Alignment explanation
Indices: 14730163--14730220 Score: 56
Period size: 5 Copynumber: 10.5 Consensus size: 6
14730153 CTTAATCACT
*
14730163 TTAATA TTAA-A TTAATA -TAATA TT--TA TAAATA TT-ATA TTAAT-
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA
14730205 TTAATA TTAAATA TTA
1 TTAATA TT-AATA TTA
14730221 TTAAAATAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
4 3 0.07
5 20 0.47
6 14 0.33
7 6 0.14
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:14730458 original size:21 final size:23
Alignment explanation
Indices: 14730405--14730448 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
14730395 GGCCATCGGA
* *
14730405 ACACTGCCTTCGTAACCACTGAG
1 ACACCGCCGTCGTAACCACTGAG
14730428 ACACCGCCGTCGTAACCACTG
1 ACACCGCCGTCGTAACCACTG
14730449 GCATCGCCGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.25, C:0.39, G:0.18, T:0.18
Consensus pattern (23 bp):
ACACCGCCGTCGTAACCACTGAG
Found at i:14739656 original size:19 final size:18
Alignment explanation
Indices: 14739614--14739656 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
14739604 TCATGCTTTC
* *
14739614 TATTCACATTTTCATATT
1 TATTCACATTTCCAAATT
14739632 TAATTCACATTTCCAAATT
1 T-ATTCACATTTCCAAATT
14739651 ATATTC
1 -TATTC
14739657 CACTTAGTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 19 0.90
20 1 0.05
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTCACATTTCCAAATT
Found at i:14739891 original size:51 final size:51
Alignment explanation
Indices: 14739824--14740017 Score: 205
Period size: 51 Copynumber: 3.8 Consensus size: 51
14739814 CAATGGTACT
* * * *
14739824 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTCCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATATCCATC
* * ** * *
14739875 CGATACACGTAGTAGCCTGTACATAGTACTACACACGTGATTGA-AGCTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATATCCATC
* * * * * *
14739926 CGGTACGCATAGTAGCCTACACATAGTACTACATATGCGACC-TAT-CATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATATCCA-TC
14739976 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC
14740018 TAGCAACTTC
Statistics
Matches: 112, Mismatches: 28, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
49 1 0.01
50 39 0.35
51 71 0.63
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (51 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATATCCATC
Found at i:14740007 original size:101 final size:102
Alignment explanation
Indices: 14739831--14740015 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
14739821 ACTCGGTTCA
* * * *
14739831 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTTCCATCCGATACACGTAGTAGCCTGTA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATATCCATCCGATACACGTAGTAGCCTGCA
14739896 CATAGTACTACACACGTGATTGAAGCTATCCGGTACG
66 CATAGTACTACACACGTGATTGAAGCTATCCGGTACG
* *
14739933 CATAGTAGCCTACACATAGTACTACATATGCGACC-TAT-CATTCCGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATATCCA-TCCGATACACGTAGTAGCCTGC
14739996 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
14740016 CCTAGCAACT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 2 0.03
101 42 0.55
102 32 0.42
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (102 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATATCCATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATTGAAGCTATCCGGTACG
Found at i:14740391 original size:22 final size:21
Alignment explanation
Indices: 14740349--14740415 Score: 57
Period size: 22 Copynumber: 3.1 Consensus size: 21
14740339 TGCACTATTA
14740349 AACAGAGAGCACTAAAA--TGCT
1 AACAGAGAGCA--AAAATGTGCT
14740370 ATACAGAGAGCAAAAATGTGCT
1 A-ACAGAGAGCAAAAATGTGCT
* **
14740392 CAACGGAGAGCACTAATGTGCT
1 -AACAGAGAGCAAAAATGTGCT
14740414 AA
1 AA
14740416 TAATCAGTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 4 0.10
21 3 0.08
22 31 0.79
23 1 0.03
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.16
Consensus pattern (21 bp):
AACAGAGAGCAAAAATGTGCT
Found at i:14745590 original size:20 final size:20
Alignment explanation
Indices: 14745565--14745611 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
14745555 AAATGAAGAT
*
14745565 TTTGACAAAGATGATACTAA
1 TTTGACAAACATGATACTAA
**
14745585 TTTGACACTCATGATACTAA
1 TTTGACAAACATGATACTAA
14745605 TTTGACA
1 TTTGACA
14745612 CTCATAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (20 bp):
TTTGACAAACATGATACTAA
Found at i:14745612 original size:20 final size:20
Alignment explanation
Indices: 14745575--14745616 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
14745565 TTTGACAAAG
14745575 ATGATACTAATTTGACACTC
1 ATGATACTAATTTGACACTC
14745595 ATGATACTAATTTGACACTC
1 ATGATACTAATTTGACACTC
14745615 AT
1 AT
14745617 AAAACCCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (20 bp):
ATGATACTAATTTGACACTC
Found at i:14746315 original size:16 final size:16
Alignment explanation
Indices: 14746294--14746340 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
14746284 TTATTAAATT
14746294 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
14746310 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
14746325 AT-TATGTTAAATTATA
1 ATATAT-TTTAATTATA
14746341 TTTTATAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.42
16 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:14746357 original size:120 final size:120
Alignment explanation
Indices: 14746200--14746457 Score: 489
Period size: 120 Copynumber: 2.1 Consensus size: 120
14746190 GGTAGTTGTC
*
14746200 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
1 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
14746265 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
66 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
14746320 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
1 TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
*
14746385 ATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
66 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
14746440 TAATAATTATGTTTAAAT
1 TAATAATTATG-TTAAAT
14746458 ATGATTAAAT
Statistics
Matches: 135, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
120 129 0.96
121 6 0.04
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
TAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
Found at i:14746418 original size:61 final size:61
Alignment explanation
Indices: 14746233--14746420 Score: 192
Period size: 61 Copynumber: 3.1 Consensus size: 61
14746223 TTATAGTATC
*
14746233 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * *
14746294 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAAATT-A-TATTTTA-TAGTAT
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT--ATTAAGAATTTTATTA-AAT
*
14746352 C
61 T
14746353 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
14746414 ATATATT
1 ATATATT
14746421 TTAATTATAA
Statistics
Matches: 96, Mismatches: 19, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
58 3 0.03
59 32 0.33
60 19 0.20
61 39 0.41
62 3 0.03
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:14746435 original size:16 final size:16
Alignment explanation
Indices: 14746414--14746455 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14746404 TTATTAAATT
*
14746414 ATATATTTTAATTATA
1 ATATATTTTAATAATA
14746430 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
14746445 AT-TATGTTTAA
1 ATATAT-TTTAA
14746456 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:14746440 original size:15 final size:15
Alignment explanation
Indices: 14746405--14746446 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14746395 TTAAGAATTT
*
14746405 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14746419 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14746433 TATTTAATAATAAT
1 TATTTAATTATAAT
14746447 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:14746692 original size:16 final size:16
Alignment explanation
Indices: 14746669--14746738 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
14746659 TTGATTTGCT
*
14746669 ATTACACCTTTATTCC
1 ATTACACCTCTATTCC
*
14746685 ACTACACCTCTATTCC
1 ATTACACCTCTATTCC
**
14746701 ATTATGCCTCTATTCC
1 ATTACACCTCTATTCC
*
14746717 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
14746733 AATACA
1 ATTACA
14746739 GTGAACCAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.26, C:0.34, G:0.03, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:14753599 original size:20 final size:20
Alignment explanation
Indices: 14753574--14753611 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14753564 GTAGTAGTTT
*
14753574 TGTCCACACGGGCGTGTGCC
1 TGTCCACACGGGCATGTGCC
14753594 TGTCCACACGGGCATGTG
1 TGTCCACACGGGCATGTG
14753612 AGGGGTTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.32, G:0.34, T:0.21
Consensus pattern (20 bp):
TGTCCACACGGGCATGTGCC
Found at i:14756637 original size:20 final size:19
Alignment explanation
Indices: 14756612--14756654 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
14756602 CAATTATTTT
*
14756612 AATAATTAGGGACTAAATTG
1 AATAATT-GGGACCAAATTG
*
14756632 AATAATTTGGACCAAATTG
1 AATAATTGGGACCAAATTG
14756651 AATA
1 AATA
14756655 GAAATAGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.47, C:0.07, G:0.16, T:0.30
Consensus pattern (19 bp):
AATAATTGGGACCAAATTG
Found at i:14759860 original size:21 final size:21
Alignment explanation
Indices: 14759836--14759905 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
14759826 GAGAGGGAGC
14759836 TGGTTTAGTAGCAGGTGATGG
1 TGGTTTAGTAGCAGGTGATGG
** * *
14759857 TGGTGCCGCAGTAGGAGAGGGA-GG
1 TGGT---TTAGTAGCAG-GTGATGG
*
14759881 TGGTTTATTAGCAGGTGATGG
1 TGGTTTAGTAGCAGGTGATGG
14759902 TGGT
1 TGGT
14759906 GCCATAGTAG
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
20 3 0.09
21 16 0.46
24 13 0.37
25 3 0.09
ACGTcount: A:0.19, C:0.07, G:0.46, T:0.29
Consensus pattern (21 bp):
TGGTTTAGTAGCAGGTGATGG
Found at i:14759947 original size:44 final size:45
Alignment explanation
Indices: 14759820--14759975 Score: 260
Period size: 45 Copynumber: 3.5 Consensus size: 45
14759810 GGTGGTGTAC
* * *
14759820 CAGTAGGAGAGGGAGCTGGTTTAGTAGCAGGTGATGGTGGTGCCG
1 CAGTAGGAGAGGGAGGTGGTTTATTAGCAGGTGATGGTGGTGCCA
14759865 CAGTAGGAGAGGGAGGTGGTTTATTAGCAGGTGATGGTGGTGCCA
1 CAGTAGGAGAGGGAGGTGGTTTATTAGCAGGTGATGGTGGTGCCA
* *
14759910 TAGTAGGAGAGGG-GGTGATTTATTAGCAGGTGATGGTGGTGCCA
1 CAGTAGGAGAGGGAGGTGGTTTATTAGCAGGTGATGGTGGTGCCA
14759954 CAGTAGGAGAGGGAGGTGGTTT
1 CAGTAGGAGAGGGAGGTGGTTT
14759976 CGTTGCGTGT
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
44 42 0.41
45 61 0.59
ACGTcount: A:0.22, C:0.08, G:0.46, T:0.24
Consensus pattern (45 bp):
CAGTAGGAGAGGGAGGTGGTTTATTAGCAGGTGATGGTGGTGCCA
Found at i:14762940 original size:27 final size:27
Alignment explanation
Indices: 14762882--14762972 Score: 83
Period size: 27 Copynumber: 3.4 Consensus size: 27
14762872 GAAGACTCTC
* * * *
14762882 CGTGTTTTCTATCCCAATGGGCTAGCT
1 CGTGTTTACTATCCCAATAGACTACCT
*
14762909 CGTGTTTACTATCCCAGTAGACTACCT
1 CGTGTTTACTATCCCAATAGACTACCT
* ** * * *
14762936 TGTGTTTACCGTCCTAACATACTACCT
1 CGTGTTTACTATCCCAATAGACTACCT
14762963 CGTGTTTACT
1 CGTGTTTACT
14762973 GTCTTGACGG
Statistics
Matches: 50, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.37
Consensus pattern (27 bp):
CGTGTTTACTATCCCAATAGACTACCT
Found at i:14763462 original size:13 final size:13
Alignment explanation
Indices: 14763429--14763463 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
14763419 CACATCCCAA
*
14763429 AAATTAGGTTAGT
1 AAATCAGGTTAGT
14763442 AGAATCAGGTTAGT
1 A-AATCAGGTTAGT
14763456 AAATCAGG
1 AAATCAGG
14763464 GTTTAGTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.40, C:0.06, G:0.26, T:0.29
Consensus pattern (13 bp):
AAATCAGGTTAGT
Found at i:14763466 original size:14 final size:14
Alignment explanation
Indices: 14763434--14763463 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14763424 CCCAAAAATT
14763434 AGGTTAGTAGAATC
1 AGGTTAGTAGAATC
14763448 AGGTTAGTA-AATC
1 AGGTTAGTAGAATC
14763461 AGG
1 AGG
14763464 GTTTAGTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.37, C:0.07, G:0.30, T:0.27
Consensus pattern (14 bp):
AGGTTAGTAGAATC
Found at i:14766834 original size:15 final size:15
Alignment explanation
Indices: 14766814--14766844 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14766804 TGAGTTTAAA
*
14766814 GTGTTTTTTAAGTTT
1 GTGTTTTTGAAGTTT
14766829 GTGTTTTTGAAGTTT
1 GTGTTTTTGAAGTTT
14766844 G
1 G
14766845 ATGGTAGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.26, T:0.61
Consensus pattern (15 bp):
GTGTTTTTGAAGTTT
Found at i:14776016 original size:18 final size:20
Alignment explanation
Indices: 14775988--14776024 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
14775978 TTAATTAAAC
14775988 ACATGAAAACAC-TTATTAA
1 ACATGAAAACACATTATTAA
14776007 ACAT-AAAACACATTATTA
1 ACATGAAAACACATTATTA
14776025 CTTACTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.54, C:0.16, G:0.03, T:0.27
Consensus pattern (20 bp):
ACATGAAAACACATTATTAA
Found at i:14776746 original size:20 final size:20
Alignment explanation
Indices: 14776718--14776838 Score: 118
Period size: 20 Copynumber: 6.0 Consensus size: 20
14776708 ATAGATGTGT
*
14776718 AACAAAGGCACCGAAGTGCA
1 AACAGAGGCACCGAAGTGCA
* *
14776738 AACAGAGGCA-TGATTGTGCA
1 AACAGAGGCACCGA-AGTGCA
* * *
14776758 ATCAGAGGCATCGTAGTGCA
1 AACAGAGGCACCGAAGTGCA
* * *
14776778 AATAGAGACACCGAAGTGTA
1 AACAGAGGCACCGAAGTGCA
* *
14776798 AATAGAGGCATCGAAGTGCA
1 AACAGAGGCACCGAAGTGCA
*
14776818 AACTGAGGCACCGAAGTGCA
1 AACAGAGGCACCGAAGTGCA
14776838 A
1 A
14776839 TCTTGTACAA
Statistics
Matches: 80, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
19 2 0.03
20 77 0.96
21 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.28, T:0.14
Consensus pattern (20 bp):
AACAGAGGCACCGAAGTGCA
Found at i:14776817 original size:60 final size:60
Alignment explanation
Indices: 14776726--14776838 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 60
14776716 GTAACAAAGG
* * * *
14776726 CACCGAAGTGCAAACAGAGGCATGATTGTGCAATCAGAGGCATCGTAGTGCAAATAGAGA
1 CACCGAAGTGCAAACAGAGGCATGATAGTGCAAACAGAGGCACCGAAGTGCAAATAGAGA
* * *
14776786 CACCGAAGTGTAAATAGAGGCATCGA-AGTGCAAACTGAGGCACCGAAGTGCAA
1 CACCGAAGTGCAAACAGAGGCAT-GATAGTGCAAACAGAGGCACCGAAGTGCAA
14776839 TCTTGTACAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
60 43 0.96
61 2 0.04
ACGTcount: A:0.37, C:0.19, G:0.28, T:0.15
Consensus pattern (60 bp):
CACCGAAGTGCAAACAGAGGCATGATAGTGCAAACAGAGGCACCGAAGTGCAAATAGAGA
Found at i:14780387 original size:95 final size:96
Alignment explanation
Indices: 14780270--14780447 Score: 277
Period size: 96 Copynumber: 1.9 Consensus size: 96
14780260 TCTTCTCTTG
* * *
14780270 TTGGATATTTAATTGGACATTGGAAACCCTTATGATC-TTTGAATTACACCAATAACATTGCACA
1 TTGGATATTTAATTGGACATTGGAAACCCTCATGATCTTTTAAACTACACCAATAACATTGCACA
* *
14780334 AAAGGTGATAGCTCAATCTTATTCTCTCTAT
66 AAAGGTGAGAGATCAATCTTATTCTCTCTAT
* *
14780365 TTGGATATTTAATTGGACATTGGGAACCCTCATGATCTTTTAAACTACACCAATAACATTTCACA
1 TTGGATATTTAATTGGACATTGGAAACCCTCATGATCTTTTAAACTACACCAATAACATTGCACA
*
14780430 ACAGGTGAGAGATCAATC
66 AAAGGTGAGAGATCAATC
14780448 ATACTCTTCT
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
95 35 0.47
96 39 0.53
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.33
Consensus pattern (96 bp):
TTGGATATTTAATTGGACATTGGAAACCCTCATGATCTTTTAAACTACACCAATAACATTGCACA
AAAGGTGAGAGATCAATCTTATTCTCTCTAT
Found at i:14787412 original size:13 final size:13
Alignment explanation
Indices: 14787396--14787435 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
14787386 TTTAAACCAA
14787396 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
14787409 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
14787422 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
14787435 A
1 A
14787436 ATGAAAAACT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:14790794 original size:21 final size:23
Alignment explanation
Indices: 14790749--14790794 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
14790739 AGGATTTCAT
14790749 TAATTATTAATTTATTGTTAGTA
1 TAATTATTAATTTATTGTTAGTA
* *
14790772 TAATT-TTATTTTATT-TTATTA
1 TAATTATTAATTTATTGTTAGTA
14790793 TA
1 TA
14790795 TTAAATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.33
22 9 0.43
23 5 0.24
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (23 bp):
TAATTATTAATTTATTGTTAGTA
Found at i:14792774 original size:10 final size:10
Alignment explanation
Indices: 14792759--14792788 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
14792749 TCAAGTCTAC
14792759 AACATACCAA
1 AACATACCAA
14792769 AACATACCAA
1 AACATACCAA
*
14792779 AACATCCCAA
1 AACATACCAA
14792789 TCTAAGTGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.57, C:0.33, G:0.00, T:0.10
Consensus pattern (10 bp):
AACATACCAA
Found at i:14802932 original size:20 final size:21
Alignment explanation
Indices: 14802904--14802943 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14802894 AATTAATCTT
*
14802904 GTTTAATTA-ACTTAATTTAG
1 GTTTAATTATACTAAATTTAG
*
14802924 GTTTTATTATACTAAATTTA
1 GTTTAATTATACTAAATTTA
14802944 CTATTAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (21 bp):
GTTTAATTATACTAAATTTAG
Found at i:14805185 original size:36 final size:36
Alignment explanation
Indices: 14805139--14805209 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
14805129 AGAAGTTTAA
*
14805139 AGAAGCTGTCATGGGTTTAATTGAACAAGTTTGGGT
1 AGAAGCTGTCACGGGTTTAATTGAACAAGTTTGGGT
* *
14805175 AGAAGTTGTCACGGGTTTAATTGATCAAGTTTGGG
1 AGAAGCTGTCACGGGTTTAATTGAACAAGTTTGGG
14805210 CATGCACTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.27, C:0.08, G:0.31, T:0.34
Consensus pattern (36 bp):
AGAAGCTGTCACGGGTTTAATTGAACAAGTTTGGGT
Found at i:14805458 original size:28 final size:28
Alignment explanation
Indices: 14805427--14805480 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
14805417 TTTTAAATAT
14805427 TGCACTTTAAATTATGTGTCTTAATTAC
1 TGCACTTTAAATTATGTGTCTTAATTAC
14805455 TGCACTTTAAATTATGTGTCTTAATT
1 TGCACTTTAAATTATGTGTCTTAATT
14805481 CTGACATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.28, C:0.13, G:0.11, T:0.48
Consensus pattern (28 bp):
TGCACTTTAAATTATGTGTCTTAATTAC
Found at i:14812695 original size:24 final size:25
Alignment explanation
Indices: 14812668--14812715 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
14812658 TCCGTTAAGT
14812668 GCTCTTCG-GAGCTAT-CCATTATAG
1 GCTCTTCGTGAGCT-TCCCATTATAG
*
14812692 GCTCTTTGTGAGCTTCCCATTATA
1 GCTCTTCGTGAGCTTCCCATTATA
14812716 TTGCCTGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.38
Consensus pattern (25 bp):
GCTCTTCGTGAGCTTCCCATTATAG
Found at i:14827117 original size:37 final size:37
Alignment explanation
Indices: 14827076--14827171 Score: 118
Period size: 29 Copynumber: 2.8 Consensus size: 37
14827066 TGAAATCCCG
14827076 AAAGTCTAAAAATTAAACTTAGATATTTAATAATCCT
1 AAAGTCTAAAAATTAAACTTAGATATTTAATAATCCT
* *
14827113 AAAGTCT---AATT---TTTACATA--TAATAATCCT
1 AAAGTCTAAAAATTAAACTTAGATATTTAATAATCCT
14827142 AAAGTCTAAAAATTAAACTTAGATATTTAA
1 AAAGTCTAAAAATTAAACTTAGATATTTAA
14827172 ACAATTAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
29 17 0.36
31 6 0.13
32 4 0.09
34 4 0.09
35 6 0.13
37 10 0.21
ACGTcount: A:0.48, C:0.10, G:0.05, T:0.36
Consensus pattern (37 bp):
AAAGTCTAAAAATTAAACTTAGATATTTAATAATCCT
Found at i:14833192 original size:12 final size:12
Alignment explanation
Indices: 14833175--14833206 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
14833165 TATGGCATAA
14833175 GCTCTAGCGGGT
1 GCTCTAGCGGGT
14833187 GCTCTAGCGGGT
1 GCTCTAGCGGGT
14833199 GCTCTAGC
1 GCTCTAGC
14833207 TTTTGGCCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.28, G:0.38, T:0.25
Consensus pattern (12 bp):
GCTCTAGCGGGT
Found at i:14838243 original size:51 final size:51
Alignment explanation
Indices: 14838167--14838277 Score: 204
Period size: 51 Copynumber: 2.2 Consensus size: 51
14838157 CAGGACCTAA
*
14838167 GTCGCTACATAAAAGTCAGTATGCTCTTCTCTAGGACGTCTTCATGGGTAT
1 GTCGCGACATAAAAGTCAGTATGCTCTTCTCTAGGACGTCTTCATGGGTAT
*
14838218 GTCGCGACATAGAAGTCAGTATGCTCTTCTCTAGGACGTCTTCATGGGTAT
1 GTCGCGACATAAAAGTCAGTATGCTCTTCTCTAGGACGTCTTCATGGGTAT
14838269 GTCGCGACA
1 GTCGCGACA
14838278 CCTTTAGGTT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (51 bp):
GTCGCGACATAAAAGTCAGTATGCTCTTCTCTAGGACGTCTTCATGGGTAT
Found at i:14846950 original size:27 final size:27
Alignment explanation
Indices: 14846906--14846992 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
14846896 GCAATGATAA
*
14846906 CCTTTGTGGA-AAAACATGAAACAAAAG
1 CCTTTGT-GACAAAACATGAAAGAAAAG
* *
14846933 CCTTTGTGACAAACCATGAAAGAAAAA
1 CCTTTGTGACAAAACATGAAAGAAAAG
* * * *
14846960 CCTTTATGGCAAAATATAAAAGAAAAG
1 CCTTTGTGACAAAACATGAAAGAAAAG
14846987 CCTTTG
1 CCTTTG
14846993 CAGTGAATTA
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
26 2 0.04
27 47 0.96
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.22
Consensus pattern (27 bp):
CCTTTGTGACAAAACATGAAAGAAAAG
Found at i:14851622 original size:3 final size:3
Alignment explanation
Indices: 14851614--14851642 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14851604 GAATAAGACA
14851614 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14851643 AGAAAAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:14855610 original size:15 final size:12
Alignment explanation
Indices: 14855572--14855603 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
14855562 TTATTAAATT
14855572 AATTAAATTTTC
1 AATTAAATTTTC
14855584 AATTAAATTTTC
1 AATTAAATTTTC
14855596 AATTAAAT
1 AATTAAAT
14855604 AATTTTCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (12 bp):
AATTAAATTTTC
Found at i:14862473 original size:25 final size:25
Alignment explanation
Indices: 14862424--14862474 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
14862414 ATTTCTATTC
* *
14862424 AAAAAATGGATAAATTAATTAATAT
1 AAAAAATAGATAAAATAATTAATAT
* *
14862449 AAAAAATAGATAAAATAGTTCATAT
1 AAAAAATAGATAAAATAATTAATAT
14862474 A
1 A
14862475 GGTTACATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (25 bp):
AAAAAATAGATAAAATAATTAATAT
Found at i:14862538 original size:24 final size:22
Alignment explanation
Indices: 14862492--14862549 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
14862482 TCAAAAAGAA
*
14862492 ATTTTTTTTTTGCTAAAAATTTC
1 ATTTTTTTGTTG-TAAAAATTTC
*
14862515 ATTTATTTATGTTGTAAAATTTTC
1 ATTT-TTT-TGTTGTAAAAATTTC
14862539 ATTTTTTTGTT
1 ATTTTTTTGTT
14862550 AAAAAAATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 4 0.13
23 7 0.23
24 16 0.52
25 4 0.13
ACGTcount: A:0.24, C:0.05, G:0.07, T:0.64
Consensus pattern (22 bp):
ATTTTTTTGTTGTAAAAATTTC
Found at i:14863810 original size:18 final size:17
Alignment explanation
Indices: 14863756--14863815 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 17
14863746 TTTAAAAAAC
* *
14863756 ATTTTTAATATTTTTAT
1 ATTTTTAATATTTTAAA
* * *
14863773 ATTTTTAATAATTCATA
1 ATTTTTAATATTTTAAA
14863790 ATTTTTATATATTTTAAA
1 ATTTTTA-ATATTTTAAA
14863808 ATTTTTAA
1 ATTTTTAA
14863816 AAAAATAATT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 20 0.59
18 14 0.41
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTTTTAATATTTTAAA
Found at i:14867360 original size:5 final size:5
Alignment explanation
Indices: 14867350--14867375 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14867340 TGAGCATTCG
14867350 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
14867376 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:14868158 original size:30 final size:31
Alignment explanation
Indices: 14868119--14868178 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
14868109 AGAGGTGAGA
*
14868119 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
14868150 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
14868179 TAAAATGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:14868408 original size:9 final size:9
Alignment explanation
Indices: 14868391--14868427 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
14868381 TATAGTTTGA
14868391 TATTCGAAT
1 TATTCGAAT
*
14868400 TATTTGAAT
1 TATTCGAAT
*
14868409 TATTCGAGT
1 TATTCGAAT
14868418 TATTCGAAT
1 TATTCGAAT
14868427 T
1 T
14868428 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:14872744 original size:31 final size:32
Alignment explanation
Indices: 14872658--14872737 Score: 144
Period size: 32 Copynumber: 2.5 Consensus size: 32
14872648 CCTGTTAAAA
*
14872658 TTACTCCTAAAATCATACCACAAACACTTAAC
1 TTACTCCTAAAATCATGCCACAAACACTTAAC
14872690 TTACTCCTAAAATCATGCCACAAACACTTAAC
1 TTACTCCTAAAATCATGCCACAAACACTTAAC
14872722 TTACT-CTAAAATCATG
1 TTACTCCTAAAATCATG
14872738 TAACAAAAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
31 11 0.23
32 36 0.77
ACGTcount: A:0.41, C:0.29, G:0.03, T:0.28
Consensus pattern (32 bp):
TTACTCCTAAAATCATGCCACAAACACTTAAC
Found at i:14875461 original size:15 final size:15
Alignment explanation
Indices: 14875441--14875470 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14875431 TTAGTAAAAA
14875441 CACTCATCTCCTTTT
1 CACTCATCTCCTTTT
*
14875456 CACTCATTTCCTTTT
1 CACTCATCTCCTTTT
14875471 TAATTTCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.37, G:0.00, T:0.50
Consensus pattern (15 bp):
CACTCATCTCCTTTT
Found at i:14876751 original size:137 final size:136
Alignment explanation
Indices: 14876573--14876984 Score: 607
Period size: 137 Copynumber: 3.0 Consensus size: 136
14876563 ACATAGATAA
*
14876573 AATTAATTTATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
* * *
14876638 TAAACAATTATTTTAATTAATTTCGATCAAAATATAAACGA-TTGGAAATTAATCTCCTTTTGGA
66 TAAACAATTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAAT-T-CTTTTGGA
14876702 AAGAATAT
129 AAGAATAT
* *
14876710 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTACTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
* * * * * * *
14876775 AAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAGAAATTAA-TATTCTGGAAA
66 TAAACAATTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATTCTTTTGGAAA
14876839 GAATAT
131 GAATAT
* * *
14876845 AATTAATATATGAATTTAATTCATACAAAATATTAA-T-TATATATATTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
*
14876908 TAAACAATTATAATAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
66 TAAACAATTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATT-A-ATTCTTTTGGA
14876973 AAGAATAT
129 AAGAATAT
14876981 AATT
1 AATT
14876985 CTTTTTTTCT
Statistics
Matches: 245, Mismatches: 26, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
133 67 0.27
134 2 0.01
135 50 0.20
136 20 0.08
137 97 0.40
138 9 0.04
ACGTcount: A:0.46, C:0.07, G:0.08, T:0.40
Consensus pattern (136 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
TAAACAATTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATTCTTTTGGAAA
GAATAT
Found at i:14878856 original size:33 final size:33
Alignment explanation
Indices: 14878819--14878895 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 33
14878809 AAGCCCTATT
* *
14878819 CAGTAACAGTATAGTGTGGGCCTAAACCCAGTA
1 CAGTAACAGTATAGAGTGGGCCTAAACCCAATA
* *
14878852 CAGTAACAG--T-GAGTGGGCCTTAGCCCAATA
1 CAGTAACAGTATAGAGTGGGCCTAAACCCAATA
14878882 CAGTAATCAGTATA
1 CAGTAA-CAGTATA
14878896 ATACAGTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
30 22 0.61
31 4 0.11
33 10 0.28
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (33 bp):
CAGTAACAGTATAGAGTGGGCCTAAACCCAATA
Found at i:14879222 original size:27 final size:28
Alignment explanation
Indices: 14879192--14879361 Score: 219
Period size: 27 Copynumber: 6.3 Consensus size: 28
14879182 AAATTGGTAT
14879192 CCTTCGAGGGTATTTCGA-TAATTTTAC
1 CCTTCGAGGGTATTTCGAGTAATTTTAC
*
14879219 CCTTC-AGGGGTATTT-TAGTAATTTTAC
1 CCTTCGA-GGGTATTTCGAGTAATTTTAC
* *
14879246 CCTTAGAGGGTATTT-TAGTAATTTTAC
1 CCTTCGAGGGTATTTCGAGTAATTTTAC
* *
14879273 CCTTTGAGGGTATTTCGA-TAATTTTAA
1 CCTTCGAGGGTATTTCGAGTAATTTTAC
14879300 CCTTCGAGGGTATTTCG-GTAATTTTAC
1 CCTTCGAGGGTATTTCGAGTAATTTTAC
*
14879327 CTTTCGAGGGTATTTC-AGTAATTTTAC
1 CCTTCGAGGGTATTTCGAGTAATTTTAC
*
14879354 CCATCGAG
1 CCTTCGAG
14879362 TCGTAAGTTA
Statistics
Matches: 127, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
26 2 0.02
27 123 0.97
28 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (28 bp):
CCTTCGAGGGTATTTCGAGTAATTTTAC
Found at i:14879336 original size:81 final size:81
Alignment explanation
Indices: 14879192--14879361 Score: 252
Period size: 81 Copynumber: 2.1 Consensus size: 81
14879182 AAATTGGTAT
* *
14879192 CCTTCGAGGGTATTTCGATAATTTTACCCTTCAGGGGTATTTTAGTAATTTTACCCTTAGAGGGT
1 CCTTCGAGGGTATTTCGATAATTTTAACCTTCAGGGGTATTTCAGTAATTTTACCCTTAGAGGGT
*
14879257 ATTTTAGTAATTTTAC
66 ATTTCAGTAATTTTAC
* * * *
14879273 CCTTTGAGGGTATTTCGATAATTTTAACCTTC-GAGGGTATTTCGGTAATTTTACCTTTCGAGGG
1 CCTTCGAGGGTATTTCGATAATTTTAACCTTCAG-GGGTATTTCAGTAATTTTACCCTTAGAGGG
14879337 TATTTCAGTAATTTTAC
65 TATTTCAGTAATTTTAC
*
14879354 CCATCGAG
1 CCTTCGAG
14879362 TCGTAAGTTA
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 78 0.99
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (81 bp):
CCTTCGAGGGTATTTCGATAATTTTAACCTTCAGGGGTATTTCAGTAATTTTACCCTTAGAGGGT
ATTTCAGTAATTTTAC
Found at i:14888283 original size:3 final size:3
Alignment explanation
Indices: 14888262--14888326 Score: 103
Period size: 3 Copynumber: 21.7 Consensus size: 3
14888252 AGGTCAAACC
* * *
14888262 TCA TCA TAA TCT TCT TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
14888310 TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TC
14888327 TTCAATATCA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.31, C:0.32, G:0.00, T:0.37
Consensus pattern (3 bp):
TCA
Found at i:14890928 original size:11 final size:11
Alignment explanation
Indices: 14890912--14890961 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
14890902 TGTTTTTTAT
*
14890912 TATTTTGTTGC
1 TATTTTGTTAC
* **
14890923 TATTTTCTTGT
1 TATTTTGTTAC
*
14890934 TATTTTTTTAC
1 TATTTTGTTAC
14890945 TATTTTGTTAC
1 TATTTTGTTAC
14890956 TATTTT
1 TATTTT
14890962 ACTATTATCT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.14, C:0.08, G:0.08, T:0.70
Consensus pattern (11 bp):
TATTTTGTTAC
Found at i:14890981 original size:22 final size:21
Alignment explanation
Indices: 14890926--14890984 Score: 68
Period size: 19 Copynumber: 2.9 Consensus size: 21
14890916 TTGTTGCTAT
*
14890926 TTTCTTGTTATTTTTTTACTA
1 TTTCTTGTTATTATTTTACTA
*
14890947 -TT-TTGTTACTATTTTACTA
1 TTTCTTGTTATTATTTTACTA
*
14890966 TTATCTTGCTATTATTTTA
1 TT-TCTTGTTATTATTTTA
14890985 TTGTTATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
19 15 0.48
20 3 0.10
21 1 0.03
22 12 0.39
ACGTcount: A:0.19, C:0.10, G:0.05, T:0.66
Consensus pattern (21 bp):
TTTCTTGTTATTATTTTACTA
Found at i:14890982 original size:33 final size:33
Alignment explanation
Indices: 14890909--14890983 Score: 80
Period size: 33 Copynumber: 2.3 Consensus size: 33
14890899 TGTTGTTTTT
* * * **
14890909 TATTATTTTGTTGCTATTTTCTTGTTATTTTTT
1 TATTATTTTGTTACTATTTTCTTATTATCTTGC
*
14890942 TACTATTTTGTTACTATTTTAC-TATTATCTTGC
1 TATTATTTTGTTACTATTTT-CTTATTATCTTGC
14890975 TATTATTTT
1 TATTATTTT
14890984 ATTGTTATTA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
33 33 0.97
34 1 0.03
ACGTcount: A:0.17, C:0.09, G:0.07, T:0.67
Consensus pattern (33 bp):
TATTATTTTGTTACTATTTTCTTATTATCTTGC
Found at i:14891162 original size:14 final size:13
Alignment explanation
Indices: 14891135--14891175 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
14891125 TATATATTTT
*
14891135 TAAAAAAATTATA
1 TAAAAAAATAATA
14891148 TAAAAATAATAATA
1 TAAAAA-AATAATA
14891162 TAAAAAAATTAATA
1 TAAAAAAA-TAATA
14891176 CAGCCAGATC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 8 0.32
14 17 0.68
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
TAAAAAAATAATA
Found at i:14893661 original size:84 final size:84
Alignment explanation
Indices: 14893501--14893662 Score: 215
Period size: 84 Copynumber: 1.9 Consensus size: 84
14893491 TGATAAAAAG
* *
14893501 GCCAAAGGTGTCACTGAGGACAAGGAAACTGAAGAGAATTCGAGTTTAGAGCATGAGGAAGCAGA
1 GCCAAAGGTGTCACTGAGGACAAGGAAACTGAAGAGAATTCGAGTTTAGAGCATGAAGAACCAGA
*
14893566 AGCAAGTTCAAATAAAATT
66 AGCAAGATCAAATAAAATT
* *
14893585 GCCAAAGGTGTCACTGAGGACAATGAAACTGAATG-G-ATTATGAGTTTCA-AGCATGAAGAACC
1 GCCAAAGGTGTCACTGAGGACAAGGAAACTGAA-GAGAATT-CGAGTTT-AGAGCATGAAGAACC
14893647 AGAAGCACA-ATCAAAT
63 AGAAGCA-AGATCAAAT
14893663 TACATTCACT
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
83 3 0.04
84 63 0.91
85 3 0.04
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (84 bp):
GCCAAAGGTGTCACTGAGGACAAGGAAACTGAAGAGAATTCGAGTTTAGAGCATGAAGAACCAGA
AGCAAGATCAAATAAAATT
Found at i:14899873 original size:19 final size:19
Alignment explanation
Indices: 14899837--14899874 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14899827 TCAAGATCTT
*
14899837 TCAATAAAATACTGTTTAA
1 TCAATAAAATACTATTTAA
*
14899856 TCAATAAAATATTATTTAA
1 TCAATAAAATACTATTTAA
14899875 AATTTAACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (19 bp):
TCAATAAAATACTATTTAA
Found at i:14909590 original size:2 final size:2
Alignment explanation
Indices: 14909540--14909573 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
14909530 AAAACTTAGG
14909540 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14909574 AAAGTAAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14910752 original size:25 final size:25
Alignment explanation
Indices: 14910724--14910772 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
14910714 TAGGGCAGAG
*
14910724 TTGTTTGAGGT-TTGGGCTGTTTGGA
1 TTGTTTG-GGTATTAGGCTGTTTGGA
14910749 TTGTTTGGGTATTAGGCTGTTTGG
1 TTGTTTGGGTATTAGGCTGTTTGG
14910773 GTATTGGGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 19 0.86
ACGTcount: A:0.08, C:0.04, G:0.39, T:0.49
Consensus pattern (25 bp):
TTGTTTGGGTATTAGGCTGTTTGGA
Found at i:14911240 original size:20 final size:19
Alignment explanation
Indices: 14911185--14911229 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
14911175 CATTTCATTG
*
14911185 AGCTCCAATTAGCTCATTTCC
1 AGCTCC-ATGAGCTCATTT-C
*
14911206 AGCTCCATGAACTCATTTC
1 AGCTCCATGAGCTCATTTC
14911225 AGCTC
1 AGCTC
14911230 ATTTGAGCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 10 0.45
21 6 0.27
ACGTcount: A:0.24, C:0.33, G:0.11, T:0.31
Consensus pattern (19 bp):
AGCTCCATGAGCTCATTTC
Found at i:14912812 original size:98 final size:98
Alignment explanation
Indices: 14912660--14912851 Score: 303
Period size: 98 Copynumber: 2.0 Consensus size: 98
14912650 TTGTAACTTT
* * * * *
14912660 AGGGAGATAAGCCTGGTGGCTTCAATGTGCTCCACTGCAACTTTAGAAAAATAAGATCCGCCATA
1 AGGGAGATAAGCCTGGTGGCTTCAATCTGCTCAACTGAAACTTCAGAAAAATAAGACCCGCCATA
14912725 ATTTGTAGCTTTAATCTGTTCCACTGCAATTTC
66 ATTTGTAGCTTTAATCTGTTCCACTGCAATTTC
* * *
14912758 AGGGAGATAAGGCTGGTGGCTTCAATCTGCTCAACTGAAACTTCAGGAAGATAAGACCCGCCATA
1 AGGGAGATAAGCCTGGTGGCTTCAATCTGCTCAACTGAAACTTCAGAAAAATAAGACCCGCCATA
*
14912823 ATTTGTAGCTTTAATTTGTTCCACTGCAA
66 ATTTGTAGCTTTAATCTGTTCCACTGCAA
14912852 CGCCAGGGAA
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 85 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (98 bp):
AGGGAGATAAGCCTGGTGGCTTCAATCTGCTCAACTGAAACTTCAGAAAAATAAGACCCGCCATA
ATTTGTAGCTTTAATCTGTTCCACTGCAATTTC
Found at i:14912923 original size:142 final size:143
Alignment explanation
Indices: 14912739--14913098 Score: 562
Period size: 142 Copynumber: 2.5 Consensus size: 143
14912729 GTAGCTTTAA
* *
14912739 TCTGTTCCACTGCAA-TTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCAACTGAAACTTCA
1 TCTGTTCCGCTGCAACTTT-AGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGAAACTTCA
*
14912803 GGAAGATAAGACCCGCCATAATTTGTAGCTTTAATTTGTTCCACTGCAACGCCAGGGAAATAAGA
65 GGAAGATAAGACCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGA
* * *
14912868 TTTGGTGTCTT-AG
130 TTCGCTATCTTCAG
* *
14912881 TCTGTTCCGCTGTAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
1 TCTGTTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGAAACTTCAG
* *
14912946 AAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGAT
66 GAAGATAAGACCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGAT
14913011 TCGCTATCTTCAG
131 TCGCTATCTTCAG
** * * *
14913024 TCTACTCCGCTGCAACTTTAGGGAGATAAGGCTGGTAGCTTCAATCTACTCCACTGTAACTTCAG
1 TCTGTTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGAAACTTCAG
14913089 GAAGATAAGA
66 GAAGATAAGA
14913099 TTCACCATAA
Statistics
Matches: 199, Mismatches: 17, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
142 126 0.63
143 73 0.37
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (143 bp):
TCTGTTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGAAACTTCAG
GAAGATAAGACCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGAT
TCGCTATCTTCAG
Found at i:14913929 original size:30 final size:28
Alignment explanation
Indices: 14913895--14913950 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 28
14913885 GTGATTAAAT
14913895 AAAATCGACA-CAAGCAGAATTTAAAAGAAA
1 AAAATCGACAGCAAG-A-AA-TTAAAAGAAA
*
14913925 AAAATTGACAGCAAGAAATTAAAAGA
1 AAAATCGACAGCAAGAAATTAAAAGA
14913951 TAAGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 8 0.33
29 2 0.08
30 10 0.42
31 4 0.17
ACGTcount: A:0.61, C:0.11, G:0.14, T:0.14
Consensus pattern (28 bp):
AAAATCGACAGCAAGAAATTAAAAGAAA
Found at i:14920626 original size:30 final size:30
Alignment explanation
Indices: 14920590--14920652 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
14920580 AATTGGTTCG
14920590 TTGATGCTCGTAACGGAGATCCAATGCGCT
1 TTGATGCTCGTAACGGAGATCCAATGCGCT
14920620 TTGATGCTCGTAACGGAGATCCAATGCGCT
1 TTGATGCTCGTAACGGAGATCCAATGCGCT
14920650 TTG
1 TTG
14920653 GCTGCAAGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (30 bp):
TTGATGCTCGTAACGGAGATCCAATGCGCT
Found at i:14933210 original size:322 final size:322
Alignment explanation
Indices: 14932622--14933251 Score: 1048
Period size: 322 Copynumber: 2.0 Consensus size: 322
14932612 CTTCATTAGT
*
14932622 AAGGCCTTAGATGCGTACACAAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTTCAAGAAAA
1 AAGGCCTTAGATGCGTACACAAAGGAAAAAGAAAATCAAGATTCACTTTCTTATTTTCAAGAAAA
14932687 TCAAGAAACCAAATCTTGGCCCAATTTTGCTGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAG
66 TCAAGAAACCAAATCTTGGCCCAATTTTGCTGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAG
* *
14932752 ATTTCAAATCTTGGAAATCTTGACCCAAGAAACTGAATCTTGCAGCTAAAGCGCATTGGATCTAA
131 ATTTCAAATCTTGGAAATCTTGACCCAAGAAACCGAATCTTGCAACTAAAGCGCATTGGATCTAA
* * * * * *
14932817 GTTACGAGCATCAAGGAACCAATTTTGGGAGAGAACGGATTACAAGCCCAAGTTCTTGAAGATAC
196 GTTACAAGCATCAAGCAACCAATTTCGGGAGAGAACGAATTACAAGCCCAAGTTCTTGAAGACAA
*
14932882 GGCCCAATAAGATGTTCCAAGCCCAA-CCAAGAAGTTTATATTAGACTTTGATACGAGTTACA
261 GGCCCAATAAGATGTTCCAAGCCCAATCC-AGAAGTTTAAATTAGACTTTGATACGAGTTACA
* *
14932944 AAGGCCTTAGATGCGTATACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTATTTTCAAGAAAA
1 AAGGCCTTAGATGCGTACACAAAGGAAAAAGAAAATCAAGATTCACTTTCTTATTTTCAAGAAAA
* *
14933009 TCAAGAAACCGAATCTTGGTCCAATTTTGCTGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAG
66 TCAAGAAACCAAATCTTGGCCCAATTTTGCTGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAG
** * *
14933074 ATTTCAAATCTTGGAAATCTTGGTCCAAGAAACCGAATCTTGCAACTAAGGCGCATTGGATCTCA
131 ATTTCAAATCTTGGAAATCTTGACCCAAGAAACCGAATCTTGCAACTAAAGCGCATTGGATCTAA
* *
14933139 GTTACAAGTATTAA-CAAGCCAATTTCGGGAGAGAACGAATTACAAGCCCAAGTTCTTGAAGACA
196 GTTACAAGCATCAAGCAA-CCAATTTCGGGAGAGAACGAATTACAAGCCCAAGTTCTTGAAGACA
14933203 AGGCCCAATAAGATGTTCCAAGCCCAATCCAGAAGTTTAAATTAGACTT
260 AGGCCCAATAAGATGTTCCAAGCCCAATCCAGAAGTTTAAATTAGACTT
14933252 AGCTGAAAAT
Statistics
Matches: 286, Mismatches: 20, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
321 2 0.01
322 282 0.99
323 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (322 bp):
AAGGCCTTAGATGCGTACACAAAGGAAAAAGAAAATCAAGATTCACTTTCTTATTTTCAAGAAAA
TCAAGAAACCAAATCTTGGCCCAATTTTGCTGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAG
ATTTCAAATCTTGGAAATCTTGACCCAAGAAACCGAATCTTGCAACTAAAGCGCATTGGATCTAA
GTTACAAGCATCAAGCAACCAATTTCGGGAGAGAACGAATTACAAGCCCAAGTTCTTGAAGACAA
GGCCCAATAAGATGTTCCAAGCCCAATCCAGAAGTTTAAATTAGACTTTGATACGAGTTACA
Found at i:14937303 original size:119 final size:119
Alignment explanation
Indices: 14937158--14937373 Score: 432
Period size: 119 Copynumber: 1.8 Consensus size: 119
14937148 GTTTCAACTG
14937158 ATTGGAAGTTAATCTTGGGGCTTAATTTCGTGTTCTTGGCTTCCAAGAACATCTATTCATAAGTG
1 ATTGGAAGTTAATCTTGGGGCTTAATTTCGTGTTCTTGGCTTCCAAGAACATCTATTCATAAGTG
14937223 TTTTGATTCTTGGCTGTTCTTTATTGATTTGGGGATTTTTAGTTTCCAGATCTA
66 TTTTGATTCTTGGCTGTTCTTTATTGATTTGGGGATTTTTAGTTTCCAGATCTA
14937277 ATTGGAAGTTAATCTTGGGGCTTAATTTCGTGTTCTTGGCTTCCAAGAACATCTATTCATAAGTG
1 ATTGGAAGTTAATCTTGGGGCTTAATTTCGTGTTCTTGGCTTCCAAGAACATCTATTCATAAGTG
14937342 TTTTGATTCTTGGCTGTTCTTTATTGATTTGG
66 TTTTGATTCTTGGCTGTTCTTTATTGATTTGG
14937374 ATTCTTTATT
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 97 1.00
ACGTcount: A:0.20, C:0.13, G:0.21, T:0.45
Consensus pattern (119 bp):
ATTGGAAGTTAATCTTGGGGCTTAATTTCGTGTTCTTGGCTTCCAAGAACATCTATTCATAAGTG
TTTTGATTCTTGGCTGTTCTTTATTGATTTGGGGATTTTTAGTTTCCAGATCTA
Found at i:14941159 original size:16 final size:18
Alignment explanation
Indices: 14941126--14941162 Score: 51
Period size: 16 Copynumber: 2.1 Consensus size: 18
14941116 ATCACTCATT
14941126 TCTTTTTCTTTTGAATCAC
1 TCTTTTTCTTTT-AATCAC
14941145 TCTTTTT-TTTT-ATCAC
1 TCTTTTTCTTTTAATCAC
14941161 TC
1 TC
14941163 ATCTTTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.39
18 4 0.22
19 7 0.39
ACGTcount: A:0.14, C:0.22, G:0.03, T:0.62
Consensus pattern (18 bp):
TCTTTTTCTTTTAATCAC
Found at i:14943461 original size:14 final size:13
Alignment explanation
Indices: 14943442--14943475 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
14943432 CGTATACAAA
14943442 TTTTTTTC-AATT
1 TTTTTTTCAAATT
14943454 TCTTTTTTCAAATT
1 T-TTTTTTCAAATT
14943468 TTTTTTTC
1 TTTTTTTC
14943476 GAAACTACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 1 0.05
13 14 0.70
14 5 0.25
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTTTCAAATT
Found at i:14950494 original size:358 final size:359
Alignment explanation
Indices: 14949822--14950526 Score: 1051
Period size: 358 Copynumber: 2.0 Consensus size: 359
14949812 ATTTGTTAGC
* * *
14949822 AAGGCCTTAGATGCATACGCGAAAGAAAGAGAAAATCAAGATTCACTTTCTTGTTTTCAAGAAAA
1 AAGGCCTTAGATGCATACACGAAAGAAAAACAAAATCAAGATTCACTTTCTTGTTTTCAAGAAAA
* * *
14949887 TCAAGAAACCAAATCTTGGCCCAATTTTGCTGTTTGGAGCGATTTCAAGAATCAAGAATATCAAG
66 TCAAGAAACCAAATCTCGGCCCAATTTTGCTGTTTGGAACGATTTCAAGAATCAAGAAAATCAAG
* * *
14949952 ATTTCAAATCTTGGAAATCTTGGTCCAAGAAACCAAATCTTGTAGCCAAAGCACATTGGATCTCC
131 ATTTCAAATCTTGGAAATCTTGGCCCAAGAAACCAAATCTTGCAGCCAAAGCACATTGGATCTCA
* * * *
14950017 GTTCTGAGCATCAACGAACCAATTTCGGTGGGAGATGGACTACAAGCCCAAGTTCTTGAAGGTAA
196 GTTCTGAGCATCAACGAACCAATTTCGGTGAGAGACGAACTACAAGCCCAAGTTCTTGAAGATAA
* * *
14950082 GGCCCAATAAGATGATTCCAAGCCCAACCAAGAAGTCAAACTATAATTAGTTGAAAATCAGGCCA
261 GACCCAATAAGATGATTCCAAGCCCAACCAAGAAGTCAAACTAGAATAAGTTGAAAATCAGGCCA
*
14950147 AATTGTTAAAGTGGCCCAATTTCTTGTTTTCAAG
326 AATTGTCAAAGTGGCCCAATTTCTTGTTTTCAAG
* *
14950181 AAGGCTTTAGATGCATACAC-AAAGGAAAAACAAAATCAAGATTCACTTTCTTGTTTTCAAGAAC
1 AAGGCCTTAGATGCATACACGAAA-GAAAAACAAAATCAAGATTCACTTTCTTGTTTTCAAGAAA
* * * *
14950245 ATCAAGAAACCGAATCTCGGTCCAATTTT-CTGTTTTGAACGATTTCAAGAATCAATAAAATCAA
65 ATCAAGAAACCAAATCTCGGCCCAATTTTGCTGTTTGGAACGATTTCAAGAATCAAGAAAATCAA
* * **
14950309 GATTTCAAATCTTGGAAATCTTGGCCCAAGAAACTAAATCTTGCAGCTAAAGCGTATTGGATCTC
130 GATTTCAAATCTTGGAAATCTTGGCCCAAGAAACCAAATCTTGCAGCCAAAGCACATTGGATCTC
*
14950374 AGTTAC-GAGCATCAACGAACCAATTTCGG-GAGAGAACGAATTACAAGCCCAAGTTCTTGAAGA
195 AGTT-CTGAGCATCAACGAACCAATTTCGGTGAGAG-ACGAACTACAAGCCCAAGTTCTTGAAGA
* * * *
14950437 TACGACCCAATAAGATG-TTCCAAGCCCAACCAAGAAGTTTAAATTAGACTAAGTTGAAAATCAG
258 TAAGACCCAATAAGATGATTCCAAGCCCAACCAAGAAG-TCAAACTAGAATAAGTTGAAAATCAG
14950501 GCCAAATTGTCAAAGTGGCCCAATTT
322 GCCAAATTGTCAAAGTGGCCCAATTT
14950527 GTAAAATTTT
Statistics
Matches: 310, Mismatches: 32, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
357 24 0.08
358 204 0.66
359 82 0.26
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.26
Consensus pattern (359 bp):
AAGGCCTTAGATGCATACACGAAAGAAAAACAAAATCAAGATTCACTTTCTTGTTTTCAAGAAAA
TCAAGAAACCAAATCTCGGCCCAATTTTGCTGTTTGGAACGATTTCAAGAATCAAGAAAATCAAG
ATTTCAAATCTTGGAAATCTTGGCCCAAGAAACCAAATCTTGCAGCCAAAGCACATTGGATCTCA
GTTCTGAGCATCAACGAACCAATTTCGGTGAGAGACGAACTACAAGCCCAAGTTCTTGAAGATAA
GACCCAATAAGATGATTCCAAGCCCAACCAAGAAGTCAAACTAGAATAAGTTGAAAATCAGGCCA
AATTGTCAAAGTGGCCCAATTTCTTGTTTTCAAG
Found at i:14952053 original size:11 final size:10
Alignment explanation
Indices: 14952031--14952068 Score: 58
Period size: 11 Copynumber: 3.6 Consensus size: 10
14952021 CAGGTATTCC
14952031 AAAAGAAAAA
1 AAAAGAAAAA
14952041 AAAAGAGAAAA
1 AAAAGA-AAAA
14952052 AAAAGAAAAA
1 AAAAGAAAAA
14952062 AATAAGA
1 AA-AAGA
14952069 TGTCTAGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 12 0.46
11 14 0.54
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:14960645 original size:10 final size:10
Alignment explanation
Indices: 14960621--14960682 Score: 56
Period size: 11 Copynumber: 6.0 Consensus size: 10
14960611 AGACCGTATA
14960621 CAATTTTTTT
1 CAATTTTTTT
14960631 C--TTTTTTT
1 CAATTTTTTT
14960639 CAATTTTTTT
1 CAATTTTTTT
*
14960649 TAATTTTTTTT
1 CAA-TTTTTTT
*
14960660 CGATTTTATTTT
1 C-AATTT-TTTT
14960672 CAAATTTTTTT
1 C-AATTTTTTT
14960683 TTCACGAGTC
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
8 8 0.19
10 10 0.24
11 14 0.33
12 10 0.24
ACGTcount: A:0.18, C:0.08, G:0.02, T:0.73
Consensus pattern (10 bp):
CAATTTTTTT
Found at i:14960646 original size:11 final size:11
Alignment explanation
Indices: 14960632--14960683 Score: 70
Period size: 11 Copynumber: 4.6 Consensus size: 11
14960622 AATTTTTTTC
14960632 TTTTTTTCAAT
1 TTTTTTTCAAT
14960643 TTTTTTT-AAT
1 TTTTTTTCAAT
*
14960653 TTTTTTTCGAT
1 TTTTTTTCAAT
14960664 TTTATTTTCAAAT
1 TTT-TTTTC-AAT
14960677 TTTTTTT
1 TTTTTTT
14960684 TCACGAGTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
10 10 0.28
11 12 0.33
12 9 0.25
13 5 0.14
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (11 bp):
TTTTTTTCAAT
Found at i:14962083 original size:29 final size:29
Alignment explanation
Indices: 14962049--14962121 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
14962039 ATGTATTAGT
* *
14962049 TTAGGACATATTTAAAACACTTGAACTAA
1 TTAGGACATATTTAAAACACCTAAACTAA
14962078 TTAGGACATATTTAAAACACCTAAACTAA
1 TTAGGACATATTTAAAACACCTAAACTAA
14962107 TTAGGACATATTTAA
1 TTAGGACATATTTAA
14962122 TAATATCTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.32
Consensus pattern (29 bp):
TTAGGACATATTTAAAACACCTAAACTAA
Found at i:14966720 original size:3 final size:3
Alignment explanation
Indices: 14966712--14966737 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14966702 GGTATTCCAA
14966712 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
14966738 GATGTCTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:14968795 original size:31 final size:32
Alignment explanation
Indices: 14968760--14968826 Score: 77
Period size: 31 Copynumber: 2.1 Consensus size: 32
14968750 TTATTTATAT
*
14968760 AGGTTGGCCAAATGTGTGG-GA-TCA-TTTAACA
1 AGGTTAGCCAAAT-T-TGGAGATTCATTTTAACA
*
14968791 AGGTTAGCCGAATTTGGAGATTCATTTTAACA
1 AGGTTAGCCAAATTTGGAGATTCATTTTAACA
14968823 AGGT
1 AGGT
14968827 GCATGCATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 3 0.10
30 3 0.10
31 14 0.45
32 11 0.35
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.31
Consensus pattern (32 bp):
AGGTTAGCCAAATTTGGAGATTCATTTTAACA
Found at i:14969652 original size:23 final size:23
Alignment explanation
Indices: 14969622--14969684 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
14969612 TTTGAACCAT
**
14969622 TACCATTTCGTACCAAATCGTAA
1 TACCATTTCGTACCAAATCACAA
* *
14969645 TACCATTTCGAACCAAATCACAT
1 TACCATTTCGTACCAAATCACAA
*
14969668 TACCATTTCGTAACAAA
1 TACCATTTCGTACCAAA
14969685 CCTAAACCGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.38, C:0.27, G:0.06, T:0.29
Consensus pattern (23 bp):
TACCATTTCGTACCAAATCACAA
Found at i:14969999 original size:11 final size:11
Alignment explanation
Indices: 14969950--14970003 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
14969940 AGTAGATTCG
14969950 TGAAAAAAAAGT
1 TGAAAAAAAA-T
14969962 TGAAAAAAAATT
1 TGAAAAAAAA-T
14969974 TG-AAAAAAA-
1 TGAAAAAAAAT
*
14969983 T--CAAAAAAT
1 TGAAAAAAAAT
14969992 TGAAAAAAAAT
1 TGAAAAAAAAT
14970003 T
1 T
14970004 TGTATACGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
8 6 0.17
9 2 0.06
11 15 0.42
12 13 0.36
ACGTcount: A:0.69, C:0.02, G:0.09, T:0.20
Consensus pattern (11 bp):
TGAAAAAAAAT
Found at i:14970001 original size:12 final size:12
Alignment explanation
Indices: 14969950--14969982 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
14969940 AGTAGATTCG
14969950 TGAAAAAAAAGT
1 TGAAAAAAAAGT
*
14969962 TGAAAAAAAATT
1 TGAAAAAAAAGT
14969974 TGAAAAAAA
1 TGAAAAAAA
14969983 TCAAAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.18
Consensus pattern (12 bp):
TGAAAAAAAAGT
Found at i:14972247 original size:19 final size:19
Alignment explanation
Indices: 14972219--14972263 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
14972209 GCGAAAATAC
*
14972219 AAAAGAAAAGAAAAATGAAA
1 AAAAG-AAAGAAAAATCAAA
*
14972239 AAAAGAAAGAAAATTCAAA
1 AAAAGAAAGAAAAATCAAA
14972258 AAAAGA
1 AAAAGA
14972264 GAATGAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.78, C:0.02, G:0.13, T:0.07
Consensus pattern (19 bp):
AAAAGAAAGAAAAATCAAA
Found at i:14972277 original size:15 final size:15
Alignment explanation
Indices: 14972239--14972304 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 15
14972229 AAAAATGAAA
* *
14972239 AAAAGAAAGAAAATTC
1 AAAAGAAAGAGAA-TG
14972255 AAAA-AAAGAGAATG
1 AAAAGAAAGAGAATG
*
14972269 AAAAGAAAG-TAA-G
1 AAAAGAAAGAGAATG
*
14972282 AAAAGAAAAAG-ATG
1 AAAAGAAAGAGAATG
14972296 AAAAAGAAA
1 -AAAAGAAA
14972305 CATTGAGTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
13 10 0.24
14 8 0.20
15 19 0.46
16 4 0.10
ACGTcount: A:0.73, C:0.02, G:0.18, T:0.08
Consensus pattern (15 bp):
AAAAGAAAGAGAATG
Found at i:14976412 original size:14 final size:14
Alignment explanation
Indices: 14976389--14976429 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
14976379 TGATTGAAAA
*
14976389 TTCTCTTTGAGTTT
1 TTCTCCTTGAGTTT
*
14976403 TTCTCCTTGA-ATT
1 TTCTCCTTGAGTTT
14976416 TTCT-CTTGAGTTT
1 TTCTCCTTGAGTTT
14976429 T
1 T
14976430 CTTTAGAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 5 0.22
13 9 0.39
14 9 0.39
ACGTcount: A:0.10, C:0.17, G:0.12, T:0.61
Consensus pattern (14 bp):
TTCTCCTTGAGTTT
Found at i:14976429 original size:12 final size:12
Alignment explanation
Indices: 14976389--14976431 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
14976379 TGATTGAAAA
14976389 TTCTCTTTGAGTTT
1 TTCTC-TTGAG-TT
*
14976403 TTCTCCTTGAATT
1 TTCT-CTTGAGTT
14976416 TTCTCTTGAGTT
1 TTCTCTTGAGTT
14976428 TTCT
1 TTCT
14976432 TTAGAAGTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 11 0.42
13 6 0.23
14 8 0.31
15 1 0.04
ACGTcount: A:0.09, C:0.19, G:0.12, T:0.60
Consensus pattern (12 bp):
TTCTCTTGAGTT
Found at i:14978409 original size:33 final size:34
Alignment explanation
Indices: 14978358--14978432 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 34
14978348 AGATTTAAAC
*
14978358 AAATTAATTACTAACACTTATTTAAGTTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
* *
14978392 AAATTAATT-CTAACACTTATTTGAGCTGAATTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
14978425 AATTTAAT
1 AAATTAAT
14978433 AAACTAACTC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 28 0.76
34 9 0.24
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.40
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:14980212 original size:18 final size:17
Alignment explanation
Indices: 14980189--14980227 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
14980179 CTCCTTTTCC
14980189 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
14980207 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
14980225 TCT
1 TCT
14980228 GTCTTCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:14991125 original size:23 final size:22
Alignment explanation
Indices: 14991074--14991125 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
14991064 CCTCGTCTTT
*
14991074 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
14991096 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
14991119 TTCTTTT
1 TTCTTTT
14991126 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:14993096 original size:22 final size:22
Alignment explanation
Indices: 14993068--14993111 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
14993058 TTTTGAACCA
14993068 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
14993090 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
14993112 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:14995158 original size:4 final size:4
Alignment explanation
Indices: 14995149--14995176 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
14995139 TTAAACTAAG
14995149 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
14995177 AATAAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:15002817 original size:29 final size:27
Alignment explanation
Indices: 15002779--15002833 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
15002769 GTGATTAAAT
15002779 AAAATCGACA-CAAGCAAAATTTAAAAGAA
1 AAAATCGACAGCAAG--AAA-TTAAAAGAA
*
15002808 AAAATTGACAGCAAGAAATTAAAAGA
1 AAAATCGACAGCAAGAAATTAAAAGA
15002834 TAGGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 8 0.33
28 3 0.12
29 9 0.38
30 4 0.17
ACGTcount: A:0.62, C:0.11, G:0.13, T:0.15
Consensus pattern (27 bp):
AAAATCGACAGCAAGAAATTAAAAGAA
Found at i:15008396 original size:20 final size:20
Alignment explanation
Indices: 15008368--15008443 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
15008358 GCTTATTTTT
*
15008368 TTAGTTCATTCGAGCTCAAA
1 TTAGCTCATTCGAGCTCAAA
* *
15008388 TTAGCTCATTTGAGCTCAAG
1 TTAGCTCATTCGAGCTCAAA
*
15008408 TCAGCTCATTCGAGCTC-AA
1 TTAGCTCATTCGAGCTCAAA
15008427 TTCAGCTCATT-GAGCTC
1 TT-AGCTCATTCGAGCTC
15008444 GTTATTAGCT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
19 8 0.17
20 40 0.83
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (20 bp):
TTAGCTCATTCGAGCTCAAA
Found at i:15008403 original size:10 final size:10
Alignment explanation
Indices: 15008379--15008443 Score: 55
Period size: 10 Copynumber: 6.6 Consensus size: 10
15008369 TAGTTCATTC
15008379 GAGCTCAAATT
1 GAGCTC-AATT
*
15008390 -AGCTCATTT
1 GAGCTCAATT
*
15008399 GAGCTCAAGT
1 GAGCTCAATT
*
15008409 CAGCTC-ATT
1 GAGCTCAATT
15008418 CGAGCTCAATT
1 -GAGCTCAATT
*
15008429 CAGCTC-ATT
1 GAGCTCAATT
15008438 GAGCTC
1 GAGCTC
15008444 GTTATTAGCT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
9 13 0.30
10 27 0.63
11 3 0.07
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (10 bp):
GAGCTCAATT
Found at i:15008454 original size:40 final size:40
Alignment explanation
Indices: 15008368--15008443 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
15008358 GCTTATTTTT
*
15008368 TTAGTTCATTCGAGCTCAAATTAGCTCATTTGAGCTCAAG
1 TTAGCTCATTCGAGCTCAAATTAGCTCATTTGAGCTCAAG
*
15008408 TCAGCTCATTCGAGCTC-AATTCAGCTCA-TTGAGCTC
1 TTAGCTCATTCGAGCTCAAATT-AGCTCATTTGAGCTC
15008444 GTTATTAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
39 12 0.36
40 21 0.64
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (40 bp):
TTAGCTCATTCGAGCTCAAATTAGCTCATTTGAGCTCAAG
Found at i:15015332 original size:16 final size:16
Alignment explanation
Indices: 15015311--15015341 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15015301 AAAAAAATCA
*
15015311 AAAAAAAATCGAAAAG
1 AAAAAAAATAGAAAAG
15015327 AAAAAAAATAGAAAA
1 AAAAAAAATAGAAAA
15015342 AAATATTGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.03, G:0.10, T:0.06
Consensus pattern (16 bp):
AAAAAAAATAGAAAAG
Found at i:15019881 original size:20 final size:20
Alignment explanation
Indices: 15019858--15019911 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
15019848 AGTTTTTCGC
*
15019858 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
15019878 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
15019898 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
15019912 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:15019893 original size:30 final size:30
Alignment explanation
Indices: 15019858--15019931 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
15019848 AGTTTTTCGC
15019858 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
15019888 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
15019918 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
15019932 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:15019921 original size:20 final size:20
Alignment explanation
Indices: 15019858--15019922 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
15019848 AGTTTTTCGC
* * * *
15019858 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
15019878 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
15019897 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
15019918 AGCTC
1 AGCTC
15019923 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:15035860 original size:11 final size:11
Alignment explanation
Indices: 15035844--15035884 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
15035834 CGAGATTGTA
15035844 AAAAAAATTCG
1 AAAAAAATTCG
*
15035855 AAAAAAAATTCA
1 -AAAAAAATTCG
*
15035867 AAAAAAATTTG
1 AAAAAAATTCG
15035878 AAAAAAA
1 AAAAAAA
15035885 AAATTAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
11 16 0.62
12 10 0.38
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.17
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:15035860 original size:12 final size:12
Alignment explanation
Indices: 15035843--15035885 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
15035833 ACGAGATTGT
15035843 AAAAAAAATTCG
1 AAAAAAAATTCG
15035855 AAAAAAAATTC-
1 AAAAAAAATTCG
*
15035866 AAAAAAAATTTG
1 AAAAAAAATTCG
15035878 AAAAAAAA
1 AAAAAAAA
15035886 AATTAATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 10 0.34
12 19 0.66
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:15038413 original size:20 final size:20
Alignment explanation
Indices: 15038385--15038460 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
15038375 GCTTATTTTT
*
15038385 TTAGTTCATTCGAGCTCAAA
1 TTAGCTCATTCGAGCTCAAA
*
15038405 TTAGCTCATTCGAGCTCAAG
1 TTAGCTCATTCGAGCTCAAA
*
15038425 TCAGCTCATTCGAGCTC-AA
1 TTAGCTCATTCGAGCTCAAA
15038444 TTCAGCTCATT-GAGCTC
1 TT-AGCTCATTCGAGCTC
15038461 GTTATTAGCT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.16
20 42 0.84
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (20 bp):
TTAGCTCATTCGAGCTCAAA
Found at i:15038420 original size:10 final size:10
Alignment explanation
Indices: 15038390--15038460 Score: 62
Period size: 10 Copynumber: 7.2 Consensus size: 10
15038380 TTTTTTTAGT
15038390 TCATTCGAGC
1 TCATTCGAGC
15038400 TCAAATT--AGC
1 TC--ATTCGAGC
15038410 TCATTCGAGC
1 TCATTCGAGC
*
15038420 TCAAGTC-AGC
1 TC-ATTCGAGC
15038430 TCATTCGAGC
1 TCATTCGAGC
15038440 TCAATTC-AGC
1 TC-ATTCGAGC
15038450 TCATT-GAGC
1 TCATTCGAGC
15038459 TC
1 TC
15038461 GTTATTAGCT
Statistics
Matches: 51, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
8 3 0.06
9 11 0.22
10 27 0.53
11 7 0.14
12 3 0.06
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (10 bp):
TCATTCGAGC
Found at i:15044372 original size:30 final size:28
Alignment explanation
Indices: 15044338--15044393 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 28
15044328 GTGATTAAAT
15044338 AAAATCGACA-CAAGCAGAATTTAAAAGAAA
1 AAAATCGACAGCAAG-A-AA-TTAAAAGAAA
*
15044368 AAAATTGACAGCAAGAAATTAAAAGA
1 AAAATCGACAGCAAGAAATTAAAAGA
15044394 TAAGTCCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 8 0.33
29 2 0.08
30 10 0.42
31 4 0.17
ACGTcount: A:0.61, C:0.11, G:0.14, T:0.14
Consensus pattern (28 bp):
AAAATCGACAGCAAGAAATTAAAAGAAA
Found at i:15045196 original size:11 final size:11
Alignment explanation
Indices: 15045180--15045213 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
15045170 TTGAAAAGCC
15045180 ACATGGTGTGA
1 ACATGGTGTGA
*
15045191 ACATGG-CTGA
1 ACATGGTGTGA
15045201 ACATGGTGTGA
1 ACATGGTGTGA
15045212 AC
1 AC
15045214 GTCTTTATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (11 bp):
ACATGGTGTGA
Found at i:15045472 original size:26 final size:25
Alignment explanation
Indices: 15045396--15045472 Score: 68
Period size: 26 Copynumber: 3.1 Consensus size: 25
15045386 AATGCATCTC
* *
15045396 CAAATTCGGCTGCACTTGAATTAAAA
1 CAAATTCAGCTGAACTT-AATTAAAA
* * * *
15045422 CAAA-TGAACTTAA-TTAATTCAAA
1 CAAATTCAGCTGAACTTAATTAAAA
15045445 CAAATTCAGCTGAACTTAAATTAAAA
1 CAAATTCAGCTGAACTT-AATTAAAA
15045471 CA
1 CA
15045473 TAATGTAAAC
Statistics
Matches: 38, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
23 11 0.29
24 8 0.21
25 6 0.16
26 13 0.34
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.27
Consensus pattern (25 bp):
CAAATTCAGCTGAACTTAATTAAAA
Found at i:15050874 original size:22 final size:22
Alignment explanation
Indices: 15050844--15050887 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
15050834 TTTGGTATTT
15050844 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
15050866 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
15050888 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:15052640 original size:11 final size:11
Alignment explanation
Indices: 15052624--15052659 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
15052614 CTTTCTCTTC
15052624 TTTTTTTTGAA
1 TTTTTTTTGAA
*
15052635 TTTTTTTCGAA
1 TTTTTTTTGAA
15052646 TTTTTTTTGAA
1 TTTTTTTTGAA
15052657 TTT
1 TTT
15052660 ACAATTTACG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.17, C:0.03, G:0.08, T:0.72
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:15053481 original size:11 final size:11
Alignment explanation
Indices: 15053465--15053498 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
15053455 TTGAAAAGCC
15053465 ACATGGTGTGA
1 ACATGGTGTGA
*
15053476 ACATGG-CTGA
1 ACATGGTGTGA
15053486 ACATGGTGTGA
1 ACATGGTGTGA
15053497 AC
1 AC
15053499 GTCTTTATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (11 bp):
ACATGGTGTGA
Found at i:15062977 original size:7 final size:8
Alignment explanation
Indices: 15062960--15062984 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
15062950 CAATTCCTCC
15062960 TTTATTTT
1 TTTATTTT
15062968 TTTATTTT
1 TTTATTTT
15062976 TTTATTTT
1 TTTATTTT
15062984 T
1 T
15062985 GAATCTGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTATTTT
Found at i:15064118 original size:52 final size:51
Alignment explanation
Indices: 15064059--15064164 Score: 185
Period size: 52 Copynumber: 2.1 Consensus size: 51
15064049 CATGCACATA
* *
15064059 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCTATTATTG
1 TTTGAGCTTCAACCGAGCTAGAAATGAGATCTTAAGCTGCTGTCCATTA-TG
15064111 TTTGAGCTTCAACCGAGCTAGAAATGAGATCTTAAGCTGCTGTCCATTATG
1 TTTGAGCTTCAACCGAGCTAGAAATGAGATCTTAAGCTGCTGTCCATTATG
15064162 TTT
1 TTT
15064165 CCTTATGGTA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 5 0.10
52 47 0.90
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (51 bp):
TTTGAGCTTCAACCGAGCTAGAAATGAGATCTTAAGCTGCTGTCCATTATG
Found at i:15064800 original size:29 final size:27
Alignment explanation
Indices: 15064762--15064816 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
15064752 GTGATTAAAT
15064762 AAAATCGACA-CAAGCAGAATGTAAAAGAA
1 AAAATCGACAGCAAG-A-AAT-TAAAAGAA
*
15064791 AAAATTGACAGCAAGAAATTAAAAGA
1 AAAATCGACAGCAAGAAATTAAAAGA
15064817 TAGGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 7 0.29
28 3 0.12
29 10 0.42
30 4 0.17
ACGTcount: A:0.60, C:0.11, G:0.16, T:0.13
Consensus pattern (27 bp):
AAAATCGACAGCAAGAAATTAAAAGAA
Found at i:15067209 original size:21 final size:19
Alignment explanation
Indices: 15067166--15067210 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
15067156 GAGCTCAAAT
* *
15067166 GAGCTGAAATGAGTTCATG
1 GAGCTGAAATGAGGTAATG
15067185 GAGCTGGAAATGAGGTAATTG
1 GAGCT-GAAATGAGGTAA-TG
15067206 GAGCT
1 GAGCT
15067211 CAATGAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 10 0.45
21 7 0.32
ACGTcount: A:0.31, C:0.09, G:0.36, T:0.24
Consensus pattern (19 bp):
GAGCTGAAATGAGGTAATG
Found at i:15070526 original size:10 final size:10
Alignment explanation
Indices: 15070502--15070570 Score: 65
Period size: 11 Copynumber: 7.0 Consensus size: 10
15070492 AGACCGTATA
15070502 CAATTTTTTT
1 CAATTTTTTT
15070512 C--TTTTTTT
1 CAATTTTTTT
15070520 CAATTTTTTTT
1 CAA-TTTTTTT
15070531 C--TTTTTTT
1 CAATTTTTTT
*
15070539 CGATTTTTTT
1 CAATTTTTTT
*
15070549 CGATTTTTTTT
1 C-AATTTTTTT
15070560 CAAATTTTTTT
1 C-AATTTTTTT
15070571 TCACGAGTCT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
8 16 0.33
10 9 0.18
11 24 0.49
ACGTcount: A:0.13, C:0.10, G:0.03, T:0.74
Consensus pattern (10 bp):
CAATTTTTTT
Found at i:15070527 original size:11 final size:11
Alignment explanation
Indices: 15070513--15070573 Score: 67
Period size: 11 Copynumber: 5.8 Consensus size: 11
15070503 AATTTTTTTC
15070513 TTTTTTTCAAT
1 TTTTTTTCAAT
15070524 TTTTTTTC---
1 TTTTTTTCAAT
*
15070532 TTTTTTTCGA-
1 TTTTTTTCAAT
*
15070542 TTTTTTTCGAT
1 TTTTTTTCAAT
15070553 TTTTTTTCAAAT
1 TTTTTTTC-AAT
15070565 TTTTTTTCA
1 TTTTTTTCA
15070574 CGAGTCTACT
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
8 8 0.18
10 10 0.22
11 17 0.38
12 10 0.22
ACGTcount: A:0.13, C:0.10, G:0.03, T:0.74
Consensus pattern (11 bp):
TTTTTTTCAAT
Found at i:15070529 original size:19 final size:19
Alignment explanation
Indices: 15070505--15070572 Score: 84
Period size: 19 Copynumber: 3.4 Consensus size: 19
15070495 CCGTATACAA
15070505 TTTTTTTCTTTTTTTCAAT
1 TTTTTTTCTTTTTTTCAAT
*
15070524 TTTTTTTCTTTTTTTCGA-
1 TTTTTTTCTTTTTTTCAAT
15070542 TTTTTTTCGATTTTTTTTCAAAT
1 TTTTTTTC---TTTTTTTC-AAT
15070565 TTTTTTTC
1 TTTTTTTC
15070573 ACGAGTCTAC
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
18 8 0.19
19 17 0.40
21 8 0.19
22 1 0.02
23 8 0.19
ACGTcount: A:0.10, C:0.10, G:0.03, T:0.76
Consensus pattern (19 bp):
TTTTTTTCTTTTTTTCAAT
Found at i:15070537 original size:29 final size:29
Alignment explanation
Indices: 15070506--15070572 Score: 59
Period size: 29 Copynumber: 2.2 Consensus size: 29
15070496 CGTATACAAT
*
15070506 TTTTTTCTTTTTTTCAATTTTTTT---TCT
1 TTTTTTCTTTTTTTCGATTTTTTTCAAT-T
15070533 TTTTTTCGATTTTTTTCGATTTTTTTTCAAATT
1 TTTTTTC--TTTTTTTCGA-TTTTTTTC-AATT
15070566 TTTTTTC
1 TTTTTTC
15070573 ACGAGTCTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
27 7 0.22
29 9 0.28
30 7 0.22
33 8 0.25
34 1 0.03
ACGTcount: A:0.10, C:0.10, G:0.03, T:0.76
Consensus pattern (29 bp):
TTTTTTCTTTTTTTCGATTTTTTTCAATT
Done.