Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 68 of 150
Found at i:20422378 original size:54 final size:54
Alignment explanation
Indices: 20422311--20422430 Score: 195
Period size: 54 Copynumber: 2.2 Consensus size: 54
20422301 TTAAGTATTT
* *
20422311 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAGTTAATTA
1 AGTTGCTGAAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTA
* *
20422365 AGTTGCTGAAATAAATTACTTATCTTAGTTAATTAAGTTCATCTTAGTTAATTT
1 AGTTGCTGAAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTA
*
20422419 AGTTGCTTAAAT
1 AGTTGCTGAAAT
20422431 CATTAGTTTA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (54 bp):
AGTTGCTGAAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTA
Found at i:20424563 original size:27 final size:26
Alignment explanation
Indices: 20424532--20424587 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
20424522 AAATGAAACG
*
20424532 AGAAA-AAGAAATTGAGAGAAGAAAAAA
1 AGAAACAA-AAATTGA-AAAAGAAAAAA
*
20424559 AGAAACAAAAATTGAAAAAGAGAAAA
1 AGAAACAAAAATTGAAAAAGAAAAAA
20424585 AGA
1 AGA
20424588 TTGAAGAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 12 0.46
27 12 0.46
28 2 0.08
ACGTcount: A:0.71, C:0.02, G:0.20, T:0.07
Consensus pattern (26 bp):
AGAAACAAAAATTGAAAAAGAAAAAA
Found at i:20424578 original size:18 final size:17
Alignment explanation
Indices: 20424555--20424599 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
20424545 GAGAGAAGAA
20424555 AAAAAGAAACAAAAATTG
1 AAAAAGAAA-AAAAATTG
*
20424573 AAAAAGAGAAAAAGATTG
1 AAAAAGA-AAAAAAATTG
20424591 AAGAAAGAA
1 AA-AAAGAA
20424600 CAGAAAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.71, C:0.02, G:0.18, T:0.09
Consensus pattern (17 bp):
AAAAAGAAAAAAAATTG
Found at i:20426804 original size:28 final size:28
Alignment explanation
Indices: 20426764--20426823 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
20426754 TCACAGAGAT
* * *
20426764 AGTCTATCGGGATAGTAAACACCAGTTA
1 AGTCTATCAGGATAGTAAACACAAGGTA
*
20426792 AGTCTGTCAGGATAGTAAACACAAGGTA
1 AGTCTATCAGGATAGTAAACACAAGGTA
20426820 AGTC
1 AGTC
20426824 CAATAAGACA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (28 bp):
AGTCTATCAGGATAGTAAACACAAGGTA
Found at i:20438108 original size:14 final size:14
Alignment explanation
Indices: 20438089--20438116 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
20438079 AAAGTCTGTC
20438089 GAAGTCATTTTCAA
1 GAAGTCATTTTCAA
20438103 GAAGTCATTTTCAA
1 GAAGTCATTTTCAA
20438117 AATTCCATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
GAAGTCATTTTCAA
Found at i:20446762 original size:30 final size:30
Alignment explanation
Indices: 20446726--20446785 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
20446716 TGGATGAAAG
20446726 CTATTTTTCATGAGGGAAATCGACAAGGGA
1 CTATTTTTCATGAGGGAAATCGACAAGGGA
20446756 CTATTTTTCATGAGGGAAATCGACAAGGGA
1 CTATTTTTCATGAGGGAAATCGACAAGGGA
20446786 ATGAACAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (30 bp):
CTATTTTTCATGAGGGAAATCGACAAGGGA
Found at i:20448779 original size:27 final size:27
Alignment explanation
Indices: 20448761--20449089 Score: 399
Period size: 27 Copynumber: 12.2 Consensus size: 27
20448751 GGTATAACAA
20448761 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * **
20448788 TCATTTTACCTTATGAGGGTATTTTAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
20448815 TCATTCTACCCTATAGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
20448842 TCATTTTACCCTATTGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
*
20448869 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
20448896 TCATTCTACCCTATGGAGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* ** * *
20448923 TCATTCTACCCTATATGAGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
20448950 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
20448977 TCATTCTACCCTATGGGAGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
20449004 TCATTCTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
20449031 TCATTTTACTCTAT-AGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
20449057 TTATTTTACCCTATGGGGGAATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
20449084 TCATTT
1 TCATTT
20449090 ATGGACCTCT
Statistics
Matches: 260, Mismatches: 41, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
26 21 0.08
27 239 0.92
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGG
Found at i:20457803 original size:25 final size:25
Alignment explanation
Indices: 20457760--20457821 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
20457750 TTTGACTATT
*
20457760 AATTTAATTTTTTAAATTT-AAATA
1 AATTTAAATTTTTAAATTTAAAATA
*
20457784 AATTTGAAATTTTTATATTTAAAATA
1 AATTT-AAATTTTTAAATTTAAAATA
20457810 AA-TTAAATTTTT
1 AATTTAAATTTTT
20457822 TTGAAAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 13 0.38
25 14 0.41
26 7 0.21
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (25 bp):
AATTTAAATTTTTAAATTTAAAATA
Found at i:20461246 original size:21 final size:21
Alignment explanation
Indices: 20461217--20461272 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
20461207 TTTATATTCA
*
20461217 AACACACATAAAATCATACAT
1 AACAAACATAAAATCATACAT
20461238 AACAAACATAAAATCATACAT
1 AACAAACATAAAATCATACAT
20461259 AACAAACATAAAAT
1 AACAAACATAAAAT
20461273 AGTAAGTTCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.62, C:0.20, G:0.00, T:0.18
Consensus pattern (21 bp):
AACAAACATAAAATCATACAT
Found at i:20465593 original size:23 final size:23
Alignment explanation
Indices: 20465553--20465598 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
20465543 AAAGTTGACA
*
20465553 GTAATAGTGCAAACTATGATGAT
1 GTAATAATGCAAACTATGATGAT
* *
20465576 GTAATAATGTAAATTATGATGAT
1 GTAATAATGCAAACTATGATGAT
20465599 AGTGATAGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.41, C:0.04, G:0.20, T:0.35
Consensus pattern (23 bp):
GTAATAATGCAAACTATGATGAT
Found at i:20469170 original size:27 final size:27
Alignment explanation
Indices: 20469129--20469234 Score: 185
Period size: 27 Copynumber: 3.9 Consensus size: 27
20469119 TAGTATTGAC
* *
20469129 GCCTATCTGGAAGGCGCCAATGGTGGT
1 GCCTATTTGGGAGGCGCCAATGGTGGT
*
20469156 GCCTACTTGGGAGGCGCCAATGGTGGT
1 GCCTATTTGGGAGGCGCCAATGGTGGT
20469183 GCCTATTTGGGAGGCGCCAATGGTGGT
1 GCCTATTTGGGAGGCGCCAATGGTGGT
20469210 GCCTATTTGGGAGGCGCCAATGGTG
1 GCCTATTTGGGAGGCGCCAATGGTG
20469235 AACAAAATAT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.16, C:0.21, G:0.40, T:0.24
Consensus pattern (27 bp):
GCCTATTTGGGAGGCGCCAATGGTGGT
Found at i:20469391 original size:30 final size:27
Alignment explanation
Indices: 20469334--20469647 Score: 249
Period size: 27 Copynumber: 13.1 Consensus size: 27
20469324 ATATCCCCAC
*
20469334 ATTATAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
20469361 ATTACAATATTCATAC-AAA--A-AA-
1 ATTACAATATTCATACAAAATTACAAT
* *
20469383 ATTGCAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTACAAT
*
20469410 ATTACAATATTCATACAACATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
*
20469437 ATT-C-ATA---A-A-AAAATT--AT-
1 ATTACAATATTCATACAAAATTACAAT
20469454 -----AATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
20469476 ATTACAATATTCATAC-AAA--A-AA-
1 ATTACAATATTCATACAAAATTACAAT
20469498 ATTACAATATTCATACAAAA--A-AA-
1 ATTACAATATTCATACAAAATTACAAT
* *
20469521 A-TATAATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAATTACAAT
20469547 ATTACAATATTCATAC-AAA--A-AA-
1 ATTACAATATTCATACAAAATTACAAT
* * *
20469569 ATTGCAATATTCATACAAAACTATAAT
1 ATTACAATATTCATACAAAATTACAAT
20469596 ATTACAATATTCATAC-AAA--A-AAT
1 ATTACAATATTCATACAAAATTACAAT
*
20469619 -TTATAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
20469645 ATT
1 ATT
20469648 CATACAAAAA
Statistics
Matches: 239, Mismatches: 13, Indels: 70
0.74 0.04 0.22
Matches are distributed among these distances:
14 3 0.01
17 1 0.00
18 2 0.01
19 6 0.03
20 5 0.02
21 2 0.01
22 78 0.33
23 25 0.10
24 5 0.02
25 8 0.03
26 21 0.09
27 83 0.35
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (27 bp):
ATTACAATATTCATACAAAATTACAAT
Found at i:20469411 original size:49 final size:49
Alignment explanation
Indices: 20469281--20469647 Score: 367
Period size: 49 Copynumber: 7.7 Consensus size: 49
20469271 AATTAATTAT
* *
20469281 AAAATAATTATAATATTCATACAAAAAATTACAATATTACAATA-T-AT-C
1 AAAAAAATTACAATATTCATAC--AAAATTACAATATTACAATATTCATAC
*** * *
20469329 -CCCACATTATAATATTCATACAAAATTACAATATTACAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* *
20469377 AAAAAAATTGCAATATTCATACAAAATTATAATATTACAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* *
20469426 ---AACATTACAATATTCAT---AAA--A-AA-ATTATAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
20469465 AAAATTACAATATTACAATATTCATAC-AAA--A-AA-ATTACAATATTCATAC
1 -AAA--A-AA-ATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* * *
20469514 AAAAAAAATATAATATTCATACAAAATTACAAAATTACAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* * *
20469563 AAAAAAATTGCAATATTCATACAAAACTATAATATTACAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* *
20469612 AAAAAATTTATAATATTCATACAAAATTACAATATT
1 AAAAAAATTACAATATTCATACAAAATTACAATATT
20469648 CATACAAAAA
Statistics
Matches: 270, Mismatches: 30, Indels: 37
0.80 0.09 0.11
Matches are distributed among these distances:
39 15 0.06
40 2 0.01
41 1 0.00
43 3 0.01
44 14 0.05
45 26 0.10
46 18 0.07
47 33 0.12
48 6 0.02
49 152 0.56
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (49 bp):
AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
Found at i:20469502 original size:22 final size:22
Alignment explanation
Indices: 20469410--20469781 Score: 239
Period size: 22 Copynumber: 16.9 Consensus size: 22
20469400 AAATTATAAT
*
20469410 ATTACAATATTCATAC---AAC
1 ATTACAATATTCATACAAAAAA
20469429 ATTACAATATTCAT--AAAAAA
1 ATTACAATATTCATACAAAAAA
*
20469449 ATTATAATATTCATAC---AAA
1 ATTACAATATTCATACAAAAAA
20469468 ATTACAATATTACAATATTCATACAAAAAA
1 ATTACAATATT-C-ATA--C--A-AAAA-A
20469498 ATTACAATATTCATACAAAAAA
1 ATTACAATATTCATACAAAAAA
* *
20469520 AATATAATATTCATACAAAATTACAAA
1 ATTACAATATTCATAC--AA--A-AAA
20469547 ATTACAATATTCATACAAAAAA
1 ATTACAATATTCATACAAAAAA
*
20469569 ATTGCAATATTCATACAAAACTATAA
1 ATTACAATATTCATAC-AAA--A-AA
20469595 TATTACAATATTCATACAAAAAA
1 -ATTACAATATTCATACAAAAAA
* *
20469618 TTTATAATATTCATAC---AAA
1 ATTACAATATTCATACAAAAAA
20469637 ATTACAATATTCATAC-AAAAA
1 ATTACAATATTCATACAAAAAA
* * *
20469658 ATTACTA-ATCCA-A-AACTATAA
1 ATTACAATATTCATACAA--AAAA
* * *
20469679 A-TACAA-ATTTAATTATAAAATA
1 ATTACAATA-TTCA-TACAAAAAA
*
20469701 ATTACAATATTCATAC---AAC
1 ATTACAATATTCATACAAAAAA
20469720 ATTACAATATTCAT--AAAAAA
1 ATTACAATATTCATACAAAAAA
*
20469740 ATTATAATATTCATACAAAAAA
1 ATTACAATATTCATACAAAAAA
* *
20469762 TTTAAAATATTCATACAAAA
1 ATTACAATATTCATACAAAA
20469782 TTCTAATCTA
Statistics
Matches: 282, Mismatches: 29, Indels: 81
0.72 0.07 0.21
Matches are distributed among these distances:
19 61 0.22
20 40 0.14
21 18 0.06
22 76 0.27
23 20 0.07
24 7 0.02
25 3 0.01
26 7 0.02
27 32 0.11
28 3 0.01
29 3 0.01
30 12 0.04
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.31
Consensus pattern (22 bp):
ATTACAATATTCATACAAAAAA
Found at i:20469783 original size:20 final size:20
Alignment explanation
Indices: 20469706--20469783 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 20
20469696 AAATAATTAC
* *
20469706 AATATTCATACAACA-TTAC
1 AATATTCATACAAAATTTAA
* * *
20469725 AATATTCATAAAAAAATTAT
1 AATATTCATACAAAATTTAA
20469745 AATATTCATACAAAAAATTTAA
1 AATATTCATAC--AAAATTTAA
20469767 AATATTCATACAAAATT
1 AATATTCATACAAAATT
20469784 CTAATCTAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
19 13 0.26
20 19 0.38
22 18 0.36
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (20 bp):
AATATTCATACAAAATTTAA
Found at i:20476221 original size:19 final size:17
Alignment explanation
Indices: 20476184--20476222 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
20476174 TTATATTTTA
*
20476184 AAAAAATTATTTACTAT
1 AAAAAATTATTTACAAT
20476201 AAAAAATTATTTGTACAAT
1 AAAAAATTA-TT-TACAAT
20476220 AAA
1 AAA
20476223 TAATATCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
18 2 0.11
19 8 0.42
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (17 bp):
AAAAAATTATTTACAAT
Found at i:20477369 original size:99 final size:99
Alignment explanation
Indices: 20477198--20477395 Score: 360
Period size: 99 Copynumber: 2.0 Consensus size: 99
20477188 GGGGTGCTCC
* *
20477198 AATAACACCTAATTTAGTGGGACTCTTAATTACAGTGGTTACCCAAACATGGCATTACTGTGTAA
1 AATAACACCTAATTCAGTGGGACTCTTAATTACAGTGGTTACCCAAACATGGCATCACTGTGTAA
20477263 TTACACACAATTACACTAAATCCAATTACTAGAT
66 TTACACACAATTACACTAAATCCAATTACTAGAT
*
20477297 AATAACACCTAATTCAGTGGGACTCTTAATTACAGTGGTTATCCAAACATGGCATCACTGTGTAA
1 AATAACACCTAATTCAGTGGGACTCTTAATTACAGTGGTTACCCAAACATGGCATCACTGTGTAA
*
20477362 TTACACACAATTACACTAAATCCATTTACTAGAT
66 TTACACACAATTACACTAAATCCAATTACTAGAT
20477396 GGTTCTCCAA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 95 1.00
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (99 bp):
AATAACACCTAATTCAGTGGGACTCTTAATTACAGTGGTTACCCAAACATGGCATCACTGTGTAA
TTACACACAATTACACTAAATCCAATTACTAGAT
Found at i:20479784 original size:32 final size:31
Alignment explanation
Indices: 20479718--20479793 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 31
20479708 CTGAAAAAGT
* * *
20479718 CCTTGGTGTGAACATCAGGACTTCGACAGTC
1 CCTTGGTGTGAACATCAAGACTTAGACAGAC
*
20479749 CCTTGGATGTGAACATCAAGAGTTAGAC-GAAC
1 CCTTGG-TGTGAACATCAAGACTTAGACAG-AC
20479781 CCTTAGGTGTGAA
1 CCTT-GGTGTGAA
20479794 TAAAGCAGCT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
31 7 0.18
32 29 0.76
33 2 0.05
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (31 bp):
CCTTGGTGTGAACATCAAGACTTAGACAGAC
Found at i:20488241 original size:51 final size:51
Alignment explanation
Indices: 20488139--20488360 Score: 349
Period size: 51 Copynumber: 4.4 Consensus size: 51
20488129 TGAGTACTTC
*
20488139 TGATCAGTGACAAGTGATAAGTGGTAG-TTTAGCTACACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
* *
20488189 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGATGCACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
* * * *
20488240 TGATAAGTGACAAGTTATAACTGGTAGC-TTAGCTACACTTATTTGATCGG
1 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
*
20488290 TGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
*
20488341 TGACAAGTGACAAGTGATAA
1 TGATAAGTGACAAGTGATAA
20488361 ATATCATCCG
Statistics
Matches: 156, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
50 69 0.44
51 87 0.56
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (51 bp):
TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
Found at i:20488305 original size:101 final size:101
Alignment explanation
Indices: 20488139--20488360 Score: 354
Period size: 101 Copynumber: 2.2 Consensus size: 101
20488129 TGAGTACTTC
* * * *
20488139 TGATCAGTGACAAGTGATAAGTGGTAGTTTAGCTACACTTATCTGATCAGTGATAAGTGACAAGT
1 TGATAAGTGACAAGTGATAACTGGTAGCTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGT
*
20488204 GATAAGTGGTAGCTTTAGATGCACTTATCTGATCAG
66 GATAAGTGGTAGCTTTAGATACACTTATCTGATCAG
* * *
20488240 TGATAAGTGACAAGTTATAACTGGTAGCTTAGCTACACTTATTTGATCGGTGACAAGTGACAAGT
1 TGATAAGTGACAAGTGATAACTGGTAGCTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGT
*
20488305 GATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
66 GATAAGTGGTAGCTTTAGATACACTTATCTGATCAG
*
20488341 TGACAAGTGACAAGTGATAA
1 TGATAAGTGACAAGTGATAA
20488361 ATATCATCCG
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 110 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (101 bp):
TGATAAGTGACAAGTGATAACTGGTAGCTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGT
GATAAGTGGTAGCTTTAGATACACTTATCTGATCAG
Found at i:20489660 original size:32 final size:32
Alignment explanation
Indices: 20489597--20489674 Score: 79
Period size: 32 Copynumber: 2.5 Consensus size: 32
20489587 TCTGAAAAGT
* *
20489597 CCTTGG-TGTGAACATTAGGACTTAGACGGTC
1 CCTTGGATGTGAACATCAAGACTTAGACGGTC
* * *
20489628 CCTTGGATGTGAACATCAAGAGTTGGATGGTC
1 CCTTGGATGTGAACATCAAGACTTAGACGGTC
*
20489660 CATT-GAGTGTGAACA
1 CCTTGGA-TGTGAACA
20489675 AAGCAGCTAG
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
31 8 0.21
32 31 0.79
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (32 bp):
CCTTGGATGTGAACATCAAGACTTAGACGGTC
Found at i:20494405 original size:12 final size:12
Alignment explanation
Indices: 20494388--20494412 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20494378 TGATATCTCA
20494388 TATCAACTTATT
1 TATCAACTTATT
20494400 TATCAACTTATT
1 TATCAACTTATT
20494412 T
1 T
20494413 GAGCATGATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (12 bp):
TATCAACTTATT
Found at i:20511457 original size:24 final size:23
Alignment explanation
Indices: 20511430--20511479 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
20511420 CTGCAAATAT
*
20511430 TGGTGGCTTCGTTCACAACCTACA
1 TGGTGG-TTCGTCCACAACCTACA
*
20511454 TGGTGGTTTGTCCACAACCTACA
1 TGGTGGTTCGTCCACAACCTACA
20511477 TGG
1 TGG
20511480 CAGCTTGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.20, C:0.26, G:0.24, T:0.30
Consensus pattern (23 bp):
TGGTGGTTCGTCCACAACCTACA
Found at i:20511487 original size:23 final size:23
Alignment explanation
Indices: 20511443--20511488 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
20511433 TGGCTTCGTT
** *
20511443 CACAACCTACATGGTGGTTTGTC
1 CACAACCTACATGGCAGCTTGTC
20511466 CACAACCTACATGGCAGCTTGTC
1 CACAACCTACATGGCAGCTTGTC
20511489 TACGAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (23 bp):
CACAACCTACATGGCAGCTTGTC
Found at i:20516345 original size:37 final size:39
Alignment explanation
Indices: 20516296--20516375 Score: 112
Period size: 37 Copynumber: 2.1 Consensus size: 39
20516286 TTCAAAGTAA
* *
20516296 TAAATTGACACCCAGTGTCTCATTGACT-AAA-TCGAAG
1 TAAATTGACACCCAGTGCCTCATCGACTCAAAGTCGAAG
*
20516333 TAAATTGGCACCCAGTGCCTCATCGACTCAAAGTCGAAG
1 TAAATTGACACCCAGTGCCTCATCGACTCAAAGTCGAAG
20516372 -AAAT
1 TAAAT
20516376 CCATGAACTC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 25 0.66
38 7 0.18
39 6 0.16
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (39 bp):
TAAATTGACACCCAGTGCCTCATCGACTCAAAGTCGAAG
Found at i:20517295 original size:5 final size:5
Alignment explanation
Indices: 20517285--20517335 Score: 102
Period size: 5 Copynumber: 10.2 Consensus size: 5
20517275 ACATTAAGTA
20517285 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
20517335 A
1 A
20517336 TATTAAATTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AATAT
Found at i:20523942 original size:8 final size:8
Alignment explanation
Indices: 20523929--20524008 Score: 67
Period size: 8 Copynumber: 10.0 Consensus size: 8
20523919 TTTTAGTTCT
20523929 TTTATATA
1 TTTATATA
20523937 TTTATATA
1 TTTATATA
20523945 TTTATATA
1 TTTATATA
* *
20523953 TTTTTTATT
1 -TTTATATA
*
20523962 TTTATAAA
1 TTTATATA
*
20523970 TTTATAAAA
1 TTTAT-ATA
*
20523979 TTT-TAAA
1 TTTATATA
20523986 TTT-T-TA
1 TTTATATA
20523992 TTTATATA
1 TTTATATA
20524000 TATTATATA
1 T-TTATATA
20524009 CAGTAAAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
6 4 0.07
7 8 0.13
8 30 0.49
9 19 0.31
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TTTATATA
Found at i:20523965 original size:33 final size:31
Alignment explanation
Indices: 20523929--20524008 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 31
20523919 TTTTAGTTCT
*
20523929 TTTATATATTTATATATTTATATATTTTTTATT
1 TTTATATATTTATATATTT-TA-AATTTTTATT
* *
20523962 TTTATAAATTTATAAAATTTTAAATTTTTATT
1 TTTATATATTTAT-ATATTTTAAATTTTTATT
*
20523994 TATATATA-TTATATA
1 TTTATATATTTATATA
20524009 CAGTAAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
30 2 0.05
31 4 0.10
32 15 0.38
33 14 0.35
34 5 0.12
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (31 bp):
TTTATATATTTATATATTTTAAATTTTTATT
Found at i:20524261 original size:18 final size:20
Alignment explanation
Indices: 20524226--20524262 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
20524216 TGTGAACAAG
*
20524226 TATACTTTTTAATTAATTTA
1 TATACTTTTTAATAAATTTA
20524246 TATA-TTTTTAA-AAATTT
1 TATACTTTTTAATAAATTT
20524263 CTTTTAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 7 0.44
20 4 0.25
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
TATACTTTTTAATAAATTTA
Found at i:20540690 original size:7 final size:7
Alignment explanation
Indices: 20540678--20540717 Score: 64
Period size: 7 Copynumber: 5.9 Consensus size: 7
20540668 TTAAAAAATA
20540678 ATTTAAT
1 ATTTAAT
20540685 ATTTAAT
1 ATTTAAT
20540692 ATTTAAT
1 ATTTAAT
20540699 ATTTAAT
1 ATTTAAT
*
20540706 AGTT-AT
1 ATTTAAT
20540712 ATTTAA
1 ATTTAA
20540718 GCAATTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 5 0.17
7 25 0.83
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (7 bp):
ATTTAAT
Found at i:20541822 original size:18 final size:17
Alignment explanation
Indices: 20541771--20541826 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 17
20541761 CAACCAAGTA
20541771 AATTAATTG-ATTTTTT
1 AATTAATTGAATTTTTT
* *
20541787 AATTAAAT-AA--ATTT
1 AATTAATTGAATTTTTT
20541801 AATTAATTGAATTTTTT
1 AATTAATTGAATTTTTT
20541818 AAATTAATT
1 -AATTAATT
20541827 AATGCAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 10 0.32
15 2 0.06
16 8 0.26
17 3 0.10
18 8 0.26
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (17 bp):
AATTAATTGAATTTTTT
Found at i:20553429 original size:21 final size:21
Alignment explanation
Indices: 20553403--20553442 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
20553393 CCAAAAATTA
*
20553403 TTTTTTTATA-ATTTTTTAAC
1 TTTTTTTATATATTCTTTAAC
20553423 TTTTTTTATATATTCTTTAA
1 TTTTTTTATATATTCTTTAA
20553443 AATTTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTTTTATATATTCTTTAAC
Found at i:20553448 original size:21 final size:20
Alignment explanation
Indices: 20553404--20553449 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
20553394 CAAAAATTAT
* **
20553404 TTTTTTATAATTTTTTAACT
1 TTTTTTATAATTCTTTAAAA
20553424 TTTTTTATATATTCTTTAAAA
1 TTTTTTATA-ATTCTTTAAAA
20553445 TTTTT
1 TTTTT
20553450 ATTTTTATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTTTATAATTCTTTAAAA
Found at i:20553467 original size:22 final size:21
Alignment explanation
Indices: 20553397--20553467 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
20553387 CAAAATCCAA
*
20553397 AAATTATTTTTTTATAATTTTT
1 AAATTTTTTTTTTATAA-TTTT
* * * *
20553419 TAACTTTTTTTATATATTCTTT
1 AAATTTTTTTTTTATAAT-TTT
20553441 AAAATTTTTATTTTTATAATTTT
1 -AAATTTTT-TTTTTATAATTTT
20553464 AAAT
1 AAAT
20553468 ATATATTTTG
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
21 1 0.03
22 19 0.51
23 9 0.24
24 8 0.22
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (21 bp):
AAATTTTTTTTTTATAATTTT
Found at i:20565845 original size:49 final size:49
Alignment explanation
Indices: 20565786--20565933 Score: 260
Period size: 49 Copynumber: 3.0 Consensus size: 49
20565776 TCTCTTTAGG
*
20565786 TTAGTAAATGAATCTAGCATTTGATTGGCGATGTTTTGTAAATGTATGA
1 TTAGTAAATGAATCTAGCAGTTGATTGGCGATGTTTTGTAAATGTATGA
*
20565835 TTCGTAAATGAATCTAGCAGTTGATTGGCGATGTTTTGTAAATGTATGA
1 TTAGTAAATGAATCTAGCAGTTGATTGGCGATGTTTTGTAAATGTATGA
**
20565884 TTAGTAAATGAATCTAGCAGTTGATTGGAAATGTTTTGTAAATGTATGA
1 TTAGTAAATGAATCTAGCAGTTGATTGGCGATGTTTTGTAAATGTATGA
20565933 T
1 T
20565934 CCTTTGAACT
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 94 1.00
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (49 bp):
TTAGTAAATGAATCTAGCAGTTGATTGGCGATGTTTTGTAAATGTATGA
Found at i:20573237 original size:25 final size:26
Alignment explanation
Indices: 20573209--20573257 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
20573199 ACAAATTTTC
*
20573209 TCAAAATTTTATC-GGGGTAAAATCA
1 TCAAAATTTTATCAAGGGTAAAATCA
20573234 TCAAAATTTTATCAAGGGTAAAAT
1 TCAAAATTTTATCAAGGGTAAAAT
20573258 TGAGATGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTATCAAGGGTAAAATCA
Found at i:20574851 original size:15 final size:13
Alignment explanation
Indices: 20574820--20574859 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
20574810 GTTTATTTGG
20574820 TTTTTATTTTGTA
1 TTTTTATTTTGTA
20574833 TTTTTATTGTTG-A
1 TTTTTATT-TTGTA
20574846 TATTTTATTTTGTA
1 T-TTTTATTTTGTA
20574860 ACAAAACGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.72
Consensus pattern (13 bp):
TTTTTATTTTGTA
Found at i:20582341 original size:43 final size:43
Alignment explanation
Indices: 20582294--20582392 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
20582284 GTTTTACATG
** * *
20582294 GAAATCTCGTATCGATGCCAATAGCCTAGCTATGGTCTTACAC
1 GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTAAAC
* *
20582337 GAAATATCAAATCGATGCCAGTAGCCCAGCTATGGTCTTAAAC
1 GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTAAAC
20582380 GAAATCTCAAATC
1 GAAATCTCAAATC
20582393 AATATTGGAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (43 bp):
GAAATCTCAAATCGATGCCAATAGCCCAGCTATGGTCTTAAAC
Found at i:20591959 original size:27 final size:27
Alignment explanation
Indices: 20591919--20591979 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
20591909 CCTGCTAAAC
*
20591919 ACAGTGAATGGTGAACGACAACGAATG
1 ACAGTGAATGGTGAACGACAACGAACG
* *
20591946 ATAGTGAATGGTGAATGACAACGAACG
1 ACAGTGAATGGTGAACGACAACGAACG
20591973 ACAGTGA
1 ACAGTGA
20591980 TATTTTACGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.41, C:0.13, G:0.30, T:0.16
Consensus pattern (27 bp):
ACAGTGAATGGTGAACGACAACGAACG
Found at i:20592062 original size:17 final size:16
Alignment explanation
Indices: 20592040--20592081 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
20592030 ATCGCTAAGG
20592040 AAAAAGAAAAAGGAAAA
1 AAAAAGAAAAAGG-AAA
*
20592057 AAAAAGTAAAAGGAAA
1 AAAAAGAAAAAGGAAA
*
20592073 GAAAAGAAA
1 AAAAAGAAA
20592082 GGAAAATGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (16 bp):
AAAAAGAAAAAGGAAA
Found at i:20592106 original size:20 final size:18
Alignment explanation
Indices: 20592055--20592107 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 18
20592045 GAAAAAGGAA
*
20592055 AAAAAAAGTAAAAGGAAAG
1 AAAAAAAG-AAAAGAAAAG
20592074 AAAAGAAAGGAAAATGAAAATG
1 AAAA-AAA-GAAAA-GAAAA-G
20592096 AAAAAAAGAAAA
1 AAAAAAAGAAAA
20592108 AGAGGTACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 4 0.14
20 12 0.41
21 8 0.28
22 5 0.17
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (18 bp):
AAAAAAAGAAAAGAAAAG
Found at i:20593393 original size:34 final size:35
Alignment explanation
Indices: 20593338--20593404 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
20593328 CAAACACTAG
*
20593338 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
20593373 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
20593405 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:20593879 original size:31 final size:31
Alignment explanation
Indices: 20593839--20593925 Score: 92
Period size: 30 Copynumber: 2.9 Consensus size: 31
20593829 ATTGGACTTG
*
20593839 AATTT-TGAAATCTAAAAAGTAAAAGAACTA
1 AATTTCTGAAATCTAAAAAGTATAAGAACTA
** *
20593869 AATTTCTGAAA-AAAAAAAGTATATGAACTA
1 AATTTCTGAAATCTAAAAAGTATAAGAACTA
20593899 AA-TTCT-AAATCTGTAAAAAGTATAAGA
1 AATTTCTGAAATC--TAAAAAGTATAAGA
20593926 GGCTTTGACA
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
28 3 0.07
29 4 0.09
30 22 0.48
31 17 0.37
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (31 bp):
AATTTCTGAAATCTAAAAAGTATAAGAACTA
Found at i:20597111 original size:32 final size:31
Alignment explanation
Indices: 20597052--20597111 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
20597042 TGTCCAAATC
*
20597052 AAATAAATTATTTAAAAATTATAAAAATAAA
1 AAATAAATTATTTAAAAATTAGAAAAATAAA
20597083 AAATAAATTTATTTAAAAA-TAGAGAAAAT
1 AAATAAA-TTATTTAAAAATTAGA-AAAAT
20597112 TGGTTCAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 10 0.38
32 16 0.62
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (31 bp):
AAATAAATTATTTAAAAATTAGAAAAATAAA
Found at i:20600129 original size:9 final size:9
Alignment explanation
Indices: 20600117--20600141 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
20600107 TAAAATTATT
20600117 ATTTTAAAC
1 ATTTTAAAC
20600126 ATTTTAAAC
1 ATTTTAAAC
20600135 ATTTTAA
1 ATTTTAA
20600142 TTTTTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (9 bp):
ATTTTAAAC
Found at i:20601640 original size:20 final size:20
Alignment explanation
Indices: 20601597--20601642 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
20601587 CTGATAAAAT
* *
20601597 CGATACCAAAATAAAATTAT
1 CGATACCAAAATAAAAGTAC
20601617 CGATACC-AAATAAAAGGTAC
1 CGATACCAAAATAAAA-GTAC
20601637 CGATAC
1 CGATAC
20601643 TTAATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.50, C:0.20, G:0.11, T:0.20
Consensus pattern (20 bp):
CGATACCAAAATAAAAGTAC
Found at i:20602233 original size:31 final size:33
Alignment explanation
Indices: 20602197--20602259 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
20602187 TGTAATTTTC
20602197 ATTTCAATG-TTT-AACTATCTTATTTTCTCTA
1 ATTTCAATGTTTTCAACTATCTTATTTTCTCTA
* * *
20602228 ATTTCAGTGTTTTCAATTATTTTATTTTCTCT
1 ATTTCAATGTTTTCAACTATCTTATTTTCTCT
20602260 CCATTCAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 8 0.30
32 3 0.11
33 16 0.59
ACGTcount: A:0.22, C:0.14, G:0.05, T:0.59
Consensus pattern (33 bp):
ATTTCAATGTTTTCAACTATCTTATTTTCTCTA
Found at i:20602392 original size:2 final size:2
Alignment explanation
Indices: 20602387--20602416 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
20602377 TTTTTTCATA
20602387 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20602417 GGGAATTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20605956 original size:72 final size:72
Alignment explanation
Indices: 20605873--20606015 Score: 241
Period size: 72 Copynumber: 2.0 Consensus size: 72
20605863 TCTCAGATTT
** * *
20605873 AAAAAAGGGATCATGTCCAGTAAGTTAGGACACGGTCTTTTCTTAATTCCCGAGATCGTTTAAAA
1 AAAAAAGGGATCATACCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
20605938 CTTGAGA
66 CTTGAGA
*
20605945 AAAAAATGGATCATACCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
1 AAAAAAGGGATCATACCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
20606010 CTTGAG
66 CTTGAG
20606016 TTTGAAAAGA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (72 bp):
AAAAAAGGGATCATACCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
CTTGAGA
Found at i:20608571 original size:26 final size:26
Alignment explanation
Indices: 20608537--20608591 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
20608527 CACAACAAAG
*
20608537 AACAAATCACGAAAT-AATCGATTAAC
1 AACAAATCACAAAATAAAT-GATTAAC
*
20608563 AACAGATCACAAAATAAATGATTAAC
1 AACAAATCACAAAATAAATGATTAAC
20608589 AAC
1 AAC
20608592 CAAGAAGCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.56, C:0.18, G:0.07, T:0.18
Consensus pattern (26 bp):
AACAAATCACAAAATAAATGATTAAC
Found at i:20611135 original size:50 final size:49
Alignment explanation
Indices: 20611076--20611258 Score: 177
Period size: 50 Copynumber: 3.7 Consensus size: 49
20611066 GATGGTCACG
* * **
20611076 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAGGTTGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGATTGGTT-CA
* * * * * *
20611126 TGTGTAGTACTATGTGCAGGCTACTATGCGCACCGGAAAGCTTCGATCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGATTGGTTCA
** * * * *
20611175 TGTGTGTAGTACTATGTGCAGGCTACTACGTAAACCAGAAAGTTTGATCACA
1 --TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGATTGGT-TCA
*
20611227 TGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTA
20611259 TCGAATGATA
Statistics
Matches: 107, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
49 2 0.02
50 66 0.62
51 37 0.35
52 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGATTGGTTCA
Found at i:20611192 original size:51 final size:50
Alignment explanation
Indices: 20611124--20611254 Score: 172
Period size: 51 Copynumber: 2.6 Consensus size: 50
20611114 TGAAAGGTTG
* ** *
20611124 CATGTGTAGTACTATGTGCAGGCTACTATGCGCACCGGAAAGCTTCGATCA
1 CATGTGTAGTACTATGTGCAGGCTACTACGCAAACCAGAAAG-TTCGATCA
** * *
20611175 TGTGTGTAGTACTATGTGCAGGCTACTACGTAAACCAGAAAGTTTGATCA
1 CATGTGTAGTACTATGTGCAGGCTACTACGCAAACCAGAAAGTTCGATCA
*
20611225 CATGTGTAGTACTATGTGAAGGCTACTACG
1 CATGTGTAGTACTATGTGCAGGCTACTACG
20611255 TGTATCGAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
50 34 0.49
51 35 0.51
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (50 bp):
CATGTGTAGTACTATGTGCAGGCTACTACGCAAACCAGAAAGTTCGATCA
Found at i:20616149 original size:28 final size:28
Alignment explanation
Indices: 20616117--20616247 Score: 66
Period size: 31 Copynumber: 4.2 Consensus size: 28
20616107 ATAAAATATC
20616117 TATTTTAAATATATCATTATGTTAAAAA
1 TATTTTAAATATATCATTATGTTAAAAA
*
20616145 TATTTCTAATTAATAACTCATTTAT-TTATATAAA
1 TATTT-TAAAT-AT-A-TCA-TTATGTTA-A-AAA
* * * *
20616179 TAAATTAATAATTATATAATTATATAATAAAAA
1 T--ATT-TTAAATATATCATTATGT--TAAAAA
* * *
20616212 TATTTTTATATTTATCATTATGTTAAATA
1 TA-TTTTAAATATATCATTATGTTAAAAA
20616241 TATTTTA
1 TATTTTA
20616248 TTTTTAAAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 28
0.68 0.09 0.24
Matches are distributed among these distances:
28 10 0.13
29 11 0.14
30 2 0.03
31 14 0.18
32 12 0.15
33 12 0.15
34 6 0.08
35 4 0.05
36 8 0.10
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.50
Consensus pattern (28 bp):
TATTTTAAATATATCATTATGTTAAAAA
Found at i:20616212 original size:29 final size:29
Alignment explanation
Indices: 20616152--20616212 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
20616142 AAATATTTCT
* * *
20616152 AATTAATAACTCATTTATTTATATAAATA
1 AATTAATAACTCATATAATTATATAAAAA
*
20616181 AATTAATAA-TTATATAATTATATAATAAA
1 AATTAATAACTCATATAATTATATAA-AAA
20616210 AAT
1 AAT
20616213 ATTTTTATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 13 0.48
29 14 0.52
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (29 bp):
AATTAATAACTCATATAATTATATAAAAA
Found at i:20616244 original size:96 final size:97
Alignment explanation
Indices: 20616054--20616245 Score: 264
Period size: 97 Copynumber: 2.0 Consensus size: 97
20616044 TTCATCTTTT
* * * *
20616054 TAATTAGTAAATCTTTCATTTATATAAATAAAATAATTATATGTAATTATATAATAAAATATCTA
1 TAATTAATAAATCTTTCATTTATATAAATAAAATAATAATATATAATTATATAATAAAATATATA
20616119 TTTTAAATATATCATTATGTTAAAAATATTTC
66 TTTTAAATATATCATTATGTTAAAAATATTTC
* *
20616151 TAATTAATAACTCATTT-ATTTATATAAATAAATTAATAATTATATAATTATATAATAAAA-ATA
1 TAATTAATAAATC-TTTCATTTATATAAATAAAATAATAA-TATATAATTATATAATAAAATATA
* * *
20616214 T-TTTTATATTTATCATTATGTTAAATATATTT
64 TATTTTAAATATATCATTATGTTAAAAATATTT
20616246 TATTTTTAAA
Statistics
Matches: 84, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
96 28 0.33
97 34 0.40
98 22 0.26
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.47
Consensus pattern (97 bp):
TAATTAATAAATCTTTCATTTATATAAATAAAATAATAATATATAATTATATAATAAAATATATA
TTTTAAATATATCATTATGTTAAAAATATTTC
Found at i:20616695 original size:106 final size:105
Alignment explanation
Indices: 20616507--20616703 Score: 245
Period size: 106 Copynumber: 1.9 Consensus size: 105
20616497 ATTTACTAAA
* * * * * *
20616507 AATAATGATATTTTAAATAATTAATTGATTTTATAATATTAGAATTTACCATACTCACAATGTAT
1 AATAATGATATTTGAAATAATTAATTGATTTTATAATATTAGAAATCACCACACCCACAATGTAG
20616572 ATGAAAAACAATGATATTTGAAATATTTTACATATAAAAAT
66 ATGAAAAACAA-GATATTTGAAATATTTTACATATAAAAAT
* *
20616613 AATAATGATATTTGAAATAATTATTTGATTTTATAATATTAGAAATCGCCACACCCA-AAGTGTA
1 AATAATGATATTTGAAATAATTAATTGATTTTATAATATTAGAAATCACCACACCCACAA-TGTA
* * *
20616677 GGTGGAGAAAATAA-ATATTTGACATAT
65 GAT-GA-AAAACAAGATATTTGAAATAT
20616704 AAATATTATA
Statistics
Matches: 77, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
105 2 0.03
106 67 0.87
107 2 0.03
108 6 0.08
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (105 bp):
AATAATGATATTTGAAATAATTAATTGATTTTATAATATTAGAAATCACCACACCCACAATGTAG
ATGAAAAACAAGATATTTGAAATATTTTACATATAAAAAT
Found at i:20631488 original size:20 final size:19
Alignment explanation
Indices: 20631453--20631492 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
20631443 TTTCAAAAAA
20631453 ATTTATTATATATTTATAT
1 ATTTATTATATATTTATAT
*
20631472 ATTTATTAATTTATTTATAT
1 ATTTATT-ATATATTTATAT
20631492 A
1 A
20631493 AATAAAGGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTATTATATATTTATAT
Found at i:20631639 original size:5 final size:5
Alignment explanation
Indices: 20631623--20631652 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
20631613 AAAGATGAAT
20631623 TAAAA GTAAAA TAAAA TAAAA TAAAA TAAA
1 TAAAA -TAAAA TAAAA TAAAA TAAAA TAAA
20631653 GCTTGAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:20637827 original size:17 final size:18
Alignment explanation
Indices: 20637805--20637838 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
20637795 GCAAATGAAT
20637805 TTAAAA-TTAAAAAATAA
1 TTAAAATTTAAAAAATAA
20637822 TTAAAATTTAAAAAATA
1 TTAAAATTTAAAAAATA
20637839 TTTAGATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TTAAAATTTAAAAAATAA
Found at i:20637899 original size:10 final size:9
Alignment explanation
Indices: 20637864--20637900 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
20637854 GGGTTTACCC
20637864 ACAATTAAA
1 ACAATTAAA
20637873 ACAATTAAA
1 ACAATTAAA
*
20637882 AAAATTAAA
1 ACAATTAAA
20637891 ACAAGTTAAA
1 ACAA-TTAAA
20637901 CGCTAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 20 0.80
10 5 0.20
ACGTcount: A:0.68, C:0.08, G:0.03, T:0.22
Consensus pattern (9 bp):
ACAATTAAA
Found at i:20640180 original size:6 final size:6
Alignment explanation
Indices: 20640169--20640195 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
20640159 GTAAATGTGA
20640169 TGAGGG TGAGGG TGAGGG TGAGGG TGA
1 TGAGGG TGAGGG TGAGGG TGAGGG TGA
20640196 AGAAGAGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.63, T:0.19
Consensus pattern (6 bp):
TGAGGG
Found at i:20640453 original size:27 final size:27
Alignment explanation
Indices: 20640423--20640477 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
20640413 ACAATACTTA
*
20640423 ATGAGACTGAAAGTGAAAGCTTTGGAG
1 ATGAGACTGAAAGTGAAAACTTTGGAG
20640450 ATGAGACTGAAAGTGAAAACTTTGGAG
1 ATGAGACTGAAAGTGAAAACTTTGGAG
20640477 A
1 A
20640478 GAAGTTTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.31, T:0.22
Consensus pattern (27 bp):
ATGAGACTGAAAGTGAAAACTTTGGAG
Found at i:20642781 original size:160 final size:157
Alignment explanation
Indices: 20642463--20642838 Score: 443
Period size: 160 Copynumber: 2.4 Consensus size: 157
20642453 ATGGGAACTT
* * *
20642463 AGGTATATTGTAAACACTTTTTAATTGTTAATTCCAAAATATTAAAATCTAATTTGGGTTCTGAT
1 AGGTATATCGTAAACACTTTTTAA-TGTTAATTCCAAAATATTTAAATCTAATTTGGGTTCTAAT
* * * *
20642528 TTTGTTGCTCTTAGTCTGGTACAAGTACGAGAACTAAAAGCCCAAAAAATAACAACATAATACCT
65 TTTGTTGCTCTTAGTCTGGTACAAGTACGAGAACTAAAAGCCAAAAAAAGAACAACAGAACACCT
* *
20642593 CACATTCAGCTTAATACAACTGGATCAC
130 CACATTCAGCTTAACACAACTAGATCAC
* * ** *
20642621 AGGTATATCGTATACACTATTTTAATGTAAATTAAAAAAATATTTTAATCTAATTTAGGGTTCTA
1 AGGTATATCGTAAACACT-TTTTAATGTTAATT-CCAAAATATTTAAATCTAATTT-GGGTTCTA
* ** * *
20642686 ATGTTT-TTGGTCTTAGTCTGGTATGAGTAC-ACGAACTAGAAGCCAAAAAAAGAACAATAGAAC
63 AT-TTTGTTGCTCTTAGTCTGGTACAAGTACGA-GAACTAAAAGCCAAAAAAAGAACAACAGAAC
* *
20642749 ACCAT-GCATTTAGCTTAACACAACTAGATCAC
126 ACC-TCACATTCAGCTTAACACAACTAGATCAC
** *
20642781 AAATATATCGTAAACACTTTTTTAATGTTAATTCCAAATTATTTAAATCTAATTTGGG
1 AGGTATATCGTAAACAC-TTTTTAATGTTAATTCCAAAATATTTAAATCTAATTTGGG
20642839 GTTGCCAAAA
Statistics
Matches: 182, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
158 26 0.14
159 43 0.24
160 108 0.59
161 5 0.03
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (157 bp):
AGGTATATCGTAAACACTTTTTAATGTTAATTCCAAAATATTTAAATCTAATTTGGGTTCTAATT
TTGTTGCTCTTAGTCTGGTACAAGTACGAGAACTAAAAGCCAAAAAAAGAACAACAGAACACCTC
ACATTCAGCTTAACACAACTAGATCAC
Found at i:20643060 original size:79 final size:82
Alignment explanation
Indices: 20642926--20643125 Score: 334
Period size: 79 Copynumber: 2.5 Consensus size: 82
20642916 TTGAGATGGT
*
20642926 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTGGTTAACATCTTACTGCTATA
1 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTGGCTAACATCTTACTGCTATA
20642991 GGATAATTTTGTTAGCA
66 GGATAATTTTGTTAGCA
*
20643008 TAACATATTTTG-TT-TTTTTT-AAATGATTTGTTTAAATGGTTGGCTAACATCTTACTGCTATA
1 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTGGCTAACATCTTACTGCTATA
* *
20643070 GGATCATTTTGTTAGTA
66 GGATAATTTTGTTAGCA
*
20643087 TAACATATTTTGTTTGTTTTTTGAAATGAATTGTTGAAA
1 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAA
20643126 GACGTATATC
Statistics
Matches: 109, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
79 67 0.61
80 8 0.07
81 8 0.07
82 26 0.24
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.49
Consensus pattern (82 bp):
TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTGGCTAACATCTTACTGCTATA
GGATAATTTTGTTAGCA
Found at i:20643789 original size:20 final size:20
Alignment explanation
Indices: 20643764--20643808 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
20643754 AAAAATAGTT
20643764 CATTAATTAAAAGTCCAATC
1 CATTAATTAAAAGTCCAATC
*
20643784 CATTAATTAAAAGTCCAATT
1 CATTAATTAAAAGTCCAATC
20643804 CATTA
1 CATTA
20643809 CAAGTCCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.44, C:0.18, G:0.04, T:0.33
Consensus pattern (20 bp):
CATTAATTAAAAGTCCAATC
Found at i:20647755 original size:18 final size:18
Alignment explanation
Indices: 20647722--20647760 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
20647712 GGGTTTTGAT
*
20647722 TTTTTTAATTTTAATT-A
1 TTTTTTAATTTAAATTCA
20647739 TTTTTTAAGTTTAAATTCA
1 TTTTTTAA-TTTAAATTCA
20647758 TTT
1 TTT
20647761 GCTAACGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 7 0.37
19 4 0.21
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTTTTAATTTAAATTCA
Found at i:20657983 original size:15 final size:15
Alignment explanation
Indices: 20657963--20657997 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
20657953 TATGTATGCC
20657963 ACAATAATAAATACA
1 ACAATAATAAATACA
20657978 ACAATAATAAATACA
1 ACAATAATAAATACA
20657993 ACAAT
1 ACAAT
20657998 GGCATAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (15 bp):
ACAATAATAAATACA
Found at i:20658467 original size:19 final size:16
Alignment explanation
Indices: 20658367--20658458 Score: 57
Period size: 16 Copynumber: 5.8 Consensus size: 16
20658357 ATACGTATAA
*
20658367 ATAT-AAAAAATATTT
1 ATATAAAAAAATAATT
20658382 ATATATAGAAAAAT-ATT
1 ATATA-A-AAAAATAATT
* *
20658399 -CATAAAAAAACAATAT
1 ATATAAAAAAATAAT-T
* * *
20658415 ATATATACACAT-ATAT
1 ATATAAAAAAATAAT-T
*
20658431 AGATAAAAAAATAATT
1 ATATAAAAAAATAATT
20658447 ATATAAAAAAAT
1 ATATAAAAAAAT
20658459 TTACATTATC
Statistics
Matches: 57, Mismatches: 13, Indels: 13
0.69 0.16 0.16
Matches are distributed among these distances:
14 5 0.09
15 7 0.12
16 28 0.49
17 11 0.19
18 6 0.11
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.30
Consensus pattern (16 bp):
ATATAAAAAAATAATT
Found at i:20660049 original size:44 final size:44
Alignment explanation
Indices: 20659943--20660716 Score: 170
Period size: 44 Copynumber: 17.7 Consensus size: 44
20659933 TCGGCTTTAA
* *
20659943 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTG-TCCACTGCAACTTCAGAGAGATAAGACTTGCCATCTTCAG
* *
20659988 TCTGCCTCACTGCAACTTCA-AGAGGATAAGACTTG-CTTACTT-AG
1 TCTGTC-CACTGCAACTTCAGAGA-GATAAGACTTGCCAT-CTTCAG
* *
20660032 TCTGTTCCACTGCAACTTCAGAGAGATAAGACTAG--A--TGC-G
1 TCTG-TCCACTGCAACTTCAGAGAGATAAGACTTGCCATCTTCAG
* * * *
20660072 ATCTG-CTCTCTGCAACTTCATAGAGAGATAAGA--T-CCAATGTTTTAA
1 -TCTGTC-CACTGCAACTTC--AGAGAGATAAGACTTGCC-AT-CTTCAG
* * * * ** ** * *
20660118 TCCGCTCCACTGTAACTTCAGGGAGATAGGA-TTATCGGCTTTAA
1 TCTG-TCCACTGCAACTTCAGAGAGATAAGACTTGCCATCTTCAG
* *
20660162 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTG-TCCACTGCAACTTCAGAGAGATAAGACTTGCCATCTTCAG
* * * * * *
20660207 TCGGCCTCAATGCAACTTTAG-GAGGATAAGACTTG-CTTACTT-GG
1 TCTGTC-CACTGCAACTTCAGAGA-GATAAGACTTGCCAT-CTTCAG
*
20660251 TCTGCTCCACTGCAACTTCA-AGGAGATAAGACTAGATGCGATC-T--G
1 TCTG-TCCACTGCAACTTCAGA-GAGATAAGACT---TGCCATCTTCAG
* * * * * *
20660296 -CT-T--TCTGTAACTTCAGAGAGATAAGATCTAAG--GT-TTTAA
1 TCTGTCCACTGCAACTTCAGAGAGATAAGA-CT-TGCCATCTTCAG
* * * * * * *
20660335 TCCGCTCCACTGCAACTTCAGGGGGATAGGATTATTGGC-T-TT-AA
1 TCTG-TCCACTGCAACTTCAGAGAGATAAGA--CTTGCCATCTTCAG
* * * *
20660379 TTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAA
1 TCTG-TCCACTGCAACTTCAGAGAGATAAGACTTGCCATCTTCAG
* *
20660424 TCTGCCTCACTGCAACTTCAG-GAGGATAAGACTTG-CTTACTT-AG
1 TCTGTC-CACTGCAACTTCAGAGA-GATAAGACTTGCCAT-CTTCAG
* * *
20660468 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAG--A--TGC-G
1 TCTG-TCCACTGCAACTTCAGAGAGATAAGACTTGCCATCTTCAG
* * * *
20660508 ATCTG-CTCACTGTAACTTCAGAGATATAAGA--T-CCAAGGT-TTTAA
1 -TCTGTC-CACTGCAACTTCAGAGAGATAAGACTTGCC-A--TCTTCAG
* * * ** ** * *
20660552 TCCGCTCCACTGCAACTTCAGGGAGATATGA-TTATCGGCTTTAA
1 TCTG-TCCACTGCAACTTCAGAGAGATAAGACTTGCCATCTTCAG
*
20660596 TCTGCTCCACTGCAACTTCAG-GAAGATAAGATTTGCCATCTTCAG
1 TCTG-TCCACTGCAACTTCAGAG-AGATAAGACTTGCCATCTTCAG
* * *
20660641 TCTGCCTCACTAC-ACTTCAG-GAGGATAAGACTTG-CTTACTT-AG
1 TCTGTC-CACTGCAACTTCAGAGA-GATAAGACTTGCCAT-CTTCAG
* * * *
20660684 TCTGCTCCAGTGTAACTTTAGGGAGATAAGACT
1 TCTG-TCCACTGCAACTTCAGAGAGATAAGACT
20660717 AGATGCGATC
Statistics
Matches: 549, Mismatches: 104, Indels: 153
0.68 0.13 0.19
Matches are distributed among these distances:
37 2 0.00
39 4 0.01
40 57 0.10
41 11 0.02
42 19 0.03
43 18 0.03
44 282 0.51
45 138 0.25
46 13 0.02
47 4 0.01
48 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
TCTGTCCACTGCAACTTCAGAGAGATAAGACTTGCCATCTTCAG
Found at i:20660440 original size:217 final size:217
Alignment explanation
Indices: 20659811--20660802 Score: 1680
Period size: 217 Copynumber: 4.6 Consensus size: 217
20659801 TCAGCTTGAT
* ** *
20659811 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATTTGCTCTCTACAACTTCAT
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGTAACTTCAG
* *
20659876 AGAGATAAGATCCAAGATTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTT
66 AGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTT
20659941 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTT
131 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTT
*
20660006 CAAGAGGATAAGACTTGCTTAC
196 CAGGAGGATAAGACTTGCTTAC
* * *
20660028 TTAGTCTGTTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAT
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGTAACTTC--
* *
20660093 AGAGAGATAAGATCCAATGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTATCGGCT
64 AGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCT
* *
20660158 TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCGGCCTCAATGCAAC
129 TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAAC
*
20660223 TTTAGGAGGATAAGACTTGCTTAC
194 TTCAGGAGGATAAGACTTGCTTAC
* * *
20660247 TTGGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCTTTCTGTAACTTCAG
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGTAACTTCAG
* * *
20660312 AGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGGGATAGGATTATTGGCTTT
66 AGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTT
* *
20660377 AATTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTGCCTCACTGCAACTT
131 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTT
20660442 CAGGAGGATAAGACTTGCTTAC
196 CAGGAGGATAAGACTTGCTTAC
*
20660464 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCACTGTAACTTCAG
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGTAACTTCAG
* *
20660529 AGATATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATATGATTATCGGCTTT
66 AGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTT
* *
20660594 AATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTAC-ACTT
131 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTT
20660658 CAGGAGGATAAGACTTGCTTAC
196 CAGGAGGATAAGACTTGCTTAC
* * *
20660680 TTAGTCTGCTCCAGTGTAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTCTGTAACTTCAG
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGTAACTTCAG
20660745 AGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAT
66 AGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAT
20660803 TGGCCACTGA
Statistics
Matches: 725, Mismatches: 48, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
216 143 0.20
217 380 0.52
219 202 0.28
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (217 bp):
TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGTAACTTCAG
AGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTT
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTT
CAGGAGGATAAGACTTGCTTAC
Found at i:20672154 original size:19 final size:19
Alignment explanation
Indices: 20672130--20672167 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
20672120 AACATTTTAT
20672130 TCTCTTCAAGATGAGTTAG
1 TCTCTTCAAGATGAGTTAG
*
20672149 TCTCTTCAAGATGCGTTAG
1 TCTCTTCAAGATGAGTTAG
20672168 GGCACAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (19 bp):
TCTCTTCAAGATGAGTTAG
Found at i:20673073 original size:50 final size:50
Alignment explanation
Indices: 20673006--20673237 Score: 320
Period size: 50 Copynumber: 4.6 Consensus size: 50
20672996 ACTGCCAATA
* * ** * * * *
20673006 CCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATTGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACG
**
20673056 CCATGTCCCAGACATGGTCTTACGGGAGACCTCTCATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACG
* * *
20673106 CCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGGTGCCAAGG
1 CCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACG
* *
20673156 CCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACG
*
20673206 CCATGTCCCAGACATGGTCTTACATGGGACCT
1 CCATGTCCCAGACATGGTCTTACATGAGACCT
20673238 TTTTACCCAA
Statistics
Matches: 166, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 166 1.00
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACG
Found at i:20675086 original size:29 final size:31
Alignment explanation
Indices: 20675020--20675091 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 31
20675010 TTAACGGCTC
*
20675020 AGTGACTAAAATGTTACAATTCGAAAACAAA
1 AGTGACTAAAATGTAACAATTCGAAAACAAA
* * * *
20675051 AGAGACTAGAATGTAAC-ATT-TAAAACATA
1 AGTGACTAAAATGTAACAATTCGAAAACAAA
20675080 AGTGACTAAAAT
1 AGTGACTAAAAT
20675092 AAAATTTGAG
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
29 17 0.50
30 3 0.09
31 14 0.41
ACGTcount: A:0.51, C:0.11, G:0.14, T:0.24
Consensus pattern (31 bp):
AGTGACTAAAATGTAACAATTCGAAAACAAA
Found at i:20689930 original size:12 final size:12
Alignment explanation
Indices: 20689913--20689937 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20689903 CTCGTCATCT
20689913 TGTAGGAATTAA
1 TGTAGGAATTAA
20689925 TGTAGGAATTAA
1 TGTAGGAATTAA
20689937 T
1 T
20689938 TCATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (12 bp):
TGTAGGAATTAA
Found at i:20695580 original size:37 final size:37
Alignment explanation
Indices: 20695506--20695700 Score: 178
Period size: 37 Copynumber: 5.2 Consensus size: 37
20695496 TGATGTATCA
* * * *
20695506 TATACTGAAAGCACGCT-ATATCGAACCAAATCTTACCGT
1 TATACTGAAAG-AAGCTCA-ATCG-AGCAAATCGTACTGT
* * *
20695545 TATACTGAATGAAGCTCAATCGAGGAAATCGTACCGT
1 TATACTGAAAGAAGCTCAATCGAGCAAATCGTACTGT
** * *
20695582 TATACTGAAAGAAGCTCAATCGAAAAAATCTTACTAT
1 TATACTGAAAGAAGCTCAATCGAGCAAATCGTACTGT
* * *
20695619 TATACTGTATGAAGCTCAACCGAGCAAAT-GTTACTGT
1 TATACTGAAAGAAGCTCAATCGAGCAAATCG-TACTGT
*** *
20695656 TATACTGAAAGATTTTCAATCGAGCAAATCCTACTGT
1 TATACTGAAAGAAGCTCAATCGAGCAAATCGTACTGT
20695693 TATACTGA
1 TATACTGA
20695701 GTGTAACTTG
Statistics
Matches: 128, Mismatches: 25, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
37 109 0.85
38 8 0.06
39 11 0.09
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.28
Consensus pattern (37 bp):
TATACTGAAAGAAGCTCAATCGAGCAAATCGTACTGT
Found at i:20695631 original size:74 final size:74
Alignment explanation
Indices: 20695506--20695700 Score: 223
Period size: 74 Copynumber: 2.6 Consensus size: 74
20695496 TGATGTATCA
* * * *
20695506 TATACTGAAAGCACGCT-ATATCGAACCAAATCTTACCGTTATACTGAATGAAGCTCAATCGAGG
1 TATACTGAAAG-AAGCTCA-ATCGAA-CAAATCTTACTGTTATACTGAATGAAGCTCAACCGAGC
20695570 AAATCG-TACCGT
63 AAAT-GTTACCGT
* * *
20695582 TATACTGAAAGAAGCTCAATCGAAAAAATCTTACTATTATACTGTATGAAGCTCAACCGAGCAAA
1 TATACTGAAAGAAGCTCAATCGAACAAATCTTACTGTTATACTGAATGAAGCTCAACCGAGCAAA
*
20695647 TGTTACTGT
66 TGTTACCGT
*** * *
20695656 TATACTGAAAGATTTTCAATCGAGCAAATCCTACTGTTATACTGA
1 TATACTGAAAGAAGCTCAATCGAACAAATCTTACTGTTATACTGA
20695701 GTGTAACTTG
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
73 1 0.01
74 78 0.77
75 10 0.10
76 12 0.12
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.28
Consensus pattern (74 bp):
TATACTGAAAGAAGCTCAATCGAACAAATCTTACTGTTATACTGAATGAAGCTCAACCGAGCAAA
TGTTACCGT
Found at i:20697570 original size:20 final size:20
Alignment explanation
Indices: 20697545--20697603 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
20697535 AATTATTACA
20697545 TGTTTGCACATACGTGCCCT
1 TGTTTGCACATACGTGCCCT
* * *
20697565 TGTTTGTAC-TTCGGTACCCT
1 TGTTTGCACATAC-GTGCCCT
*
20697585 TGTTTGCACATATGTGCCC
1 TGTTTGCACATACGTGCCC
20697604 CTGAACACAT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
19 2 0.07
20 27 0.90
21 1 0.03
ACGTcount: A:0.14, C:0.27, G:0.20, T:0.39
Consensus pattern (20 bp):
TGTTTGCACATACGTGCCCT
Found at i:20708563 original size:103 final size:104
Alignment explanation
Indices: 20708334--20708600 Score: 412
Period size: 103 Copynumber: 2.6 Consensus size: 104
20708324 TGTATATAAA
** * * *
20708334 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
**
20708399 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
20708438 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
20708502 TTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * *
20708541 AGGGTTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGGGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGC-GTGATCCACCA
20708601 ATAACGGCTA
Statistics
Matches: 150, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
103 76 0.51
104 73 0.49
105 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:20730085 original size:38 final size:38
Alignment explanation
Indices: 20730043--20730118 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
20730033 AGATGGGTGT
* *
20730043 AAGTGTTTGGAGGAGAAATTCAGAGCTATGGATAGTGC
1 AAGTGGTTGGAGGAGAAATTCAGAGCTATGGAGAGTGC
*
20730081 AAGTGGTTGGAGGAGAAATTTAGAGCTATGGAGAGTGC
1 AAGTGGTTGGAGGAGAAATTCAGAGCTATGGAGAGTGC
20730119 TAACTACCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.32, C:0.07, G:0.37, T:0.25
Consensus pattern (38 bp):
AAGTGGTTGGAGGAGAAATTCAGAGCTATGGAGAGTGC
Found at i:20742884 original size:13 final size:13
Alignment explanation
Indices: 20742847--20742885 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
20742837 TGCCCAAAGG
20742847 ATCAATCATGTTT
1 ATCAATCATGTTT
*
20742860 ATTAATATCATGTTT
1 A-TCA-ATCATGTTT
20742875 ATCAATCATGT
1 ATCAATCATGT
20742886 GTGTATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 8 0.36
14 4 0.18
15 10 0.45
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (13 bp):
ATCAATCATGTTT
Found at i:20746567 original size:44 final size:43
Alignment explanation
Indices: 20746504--20746638 Score: 137
Period size: 44 Copynumber: 3.1 Consensus size: 43
20746494 GTTACCATAG
* * *
20746504 CAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGGATGAAGCTA
1 CAAATCATATATCCCTAAAGTTGCAGTGGAGC-GGATGAAGCTA
* *
20746548 CAAATCATATATCGCTAAAGTTGCAGTGGATCGGATTGAAGCTA
1 CAAATCATATATCCCTAAAGTTGCAGTGGAGCGGA-TGAAGCTA
* * * * *
20746592 CAATTCCTATACCCCTGAAGTTGCAGTGG-GTTGGAATGAAGCTA
1 CAAATCATATATCCCTAAAGTTGCAGTGGAG-CGG-ATGAAGCTA
20746636 CAA
1 CAA
20746639 CTACAAATCC
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
43 3 0.04
44 72 0.95
45 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (43 bp):
CAAATCATATATCCCTAAAGTTGCAGTGGAGCGGATGAAGCTA
Found at i:20746769 original size:188 final size:189
Alignment explanation
Indices: 20746452--20746801 Score: 515
Period size: 188 Copynumber: 1.9 Consensus size: 189
20746442 AATGAAACAG
* * *
20746452 TACAAATTCTATACCCCTGAAGTTGTAGTGGGTCGAATTAAAGTTACCATAGCAAATCTTATCTC
1 TACAAATCCTATACCCCTGAAGTTGTAGTGGGTCGAATCAAAGTTACCATAACAAATCTTATCTC
* * * * *
20746517 CCTAAAGTTGTAGTGGAGCAGGATGAAGCTACAAATCATATATCGCTAAAGTTGCAGTGGATCGG
66 CCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCATATATCCCTAAAGTTACAATGGATCGG
20746582 ATTGAAGCTACAATTCCTATA-CCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAAC
131 ATTGAAGCTACAATTCCTATACCCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAAC
* ** * *
20746640 TACAAATCCTATACCCTTGAAGTTGTAGTGGGTCGGGTCGAA-TCTACCATAACGAATCTTATCT
1 TACAAATCCTATACCCCTGAAGTTGTAGTGGGTCGAATCAAAGT-TACCATAACAAATCTTATCT
* * * *
20746704 CCCTGAAGTTGCAGTGGAGTAAGATGAAGCTACAAATCCTATGTCCCTAAAGTTACAATGGATCG
65 CCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCATATATCCCTAAAGTTACAATGGATCG
*
20746769 GATTGAAGCTACAATTTCTATACCCCCTGAAGT
130 GATTGAAGCTACAATTCCTATACCCCCTGAAGT
20746802 GAAATGAATC
Statistics
Matches: 142, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
187 1 0.01
188 131 0.92
189 10 0.07
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (189 bp):
TACAAATCCTATACCCCTGAAGTTGTAGTGGGTCGAATCAAAGTTACCATAACAAATCTTATCTC
CCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCATATATCCCTAAAGTTACAATGGATCGG
ATTGAAGCTACAATTCCTATACCCCCTGAAGTTGCAGTGGGTTGGAATGAAGCTACAAC
Found at i:20755827 original size:30 final size:30
Alignment explanation
Indices: 20755793--20755894 Score: 96
Period size: 30 Copynumber: 3.2 Consensus size: 30
20755783 AATTCTATTT
20755793 AATTGAGGCTTAATTGGTGTTAATAAATTC
1 AATTGAGGCTTAATTGGTGTTAATAAATTC
* * * * *
20755823 AATTGAAGGTGTATGAATATGTATGATATTTAATTC
1 AATTG-AGG-CT-T-AAT-TG-GTGTTAATAAATTC
*
20755859 AATTAAGGCTTAATTGGTGTTAATAAATTC
1 AATTGAGGCTTAATTGGTGTTAATAAATTC
20755889 AATTGA
1 AATTGA
20755895 AGGTGTTAAT
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
30 20 0.37
31 5 0.09
32 4 0.07
33 2 0.04
34 4 0.07
35 5 0.09
36 14 0.26
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (30 bp):
AATTGAGGCTTAATTGGTGTTAATAAATTC
Found at i:20759694 original size:21 final size:21
Alignment explanation
Indices: 20759669--20759723 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
20759659 ATCTTCAAGG
20759669 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
20759690 ATATGAAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
20759711 -T-TGCAATCTTAGA
1 ATATGCAATCTTAGA
20759724 AGATATGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 11 0.34
20 1 0.03
21 20 0.62
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:20759730 original size:22 final size:23
Alignment explanation
Indices: 20759702--20759746 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
20759692 ATGAAATCTT
20759702 AGATATGA-TTTGCAATCTTAGA
1 AGATATGATTTTGCAATCTTAGA
*
20759724 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTTTGCAATCTTAGA
20759747 GATTTACTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTTTGCAATCTTAGA
Found at i:20759749 original size:22 final size:22
Alignment explanation
Indices: 20759681--20759749 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
20759671 ATGCAATCTT
*
20759681 AGATATGATATATGAAATCTT--
1 AGATATGAT-TTTGAAATCTTAG
*
20759702 AGATATGA-TTTGCAATCTTAG
1 AGATATGATTTTGAAATCTTAG
*
20759723 AAGATATGATTTTGTAATCTTAG
1 -AGATATGATTTTGAAATCTTAG
20759746 AGAT
1 AGAT
20759750 TTACTTTATA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
19 9 0.22
21 8 0.20
22 12 0.29
23 12 0.29
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (22 bp):
AGATATGATTTTGAAATCTTAG
Found at i:20759994 original size:23 final size:23
Alignment explanation
Indices: 20759950--20759994 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
20759940 TCATATTTTG
* *
20759950 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
20759973 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
20759995 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:20762212 original size:44 final size:44
Alignment explanation
Indices: 20762142--20762271 Score: 165
Period size: 44 Copynumber: 3.0 Consensus size: 44
20762132 GCTTTATCTC
*
20762142 CCTGGTTAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTA-CCT
1 CCTGGTTAGCAGTGGAATATGTTGAAGATTGTGAA-TCCTATCCT
* * * *
20762185 CCATGGTTAGTAGTGGAATATGCTGAAGATGGTGAATCCTATCTT
1 CC-TGGTTAGCAGTGGAATATGTTGAAGATTGTGAATCCTATCCT
* *
20762230 CCTAGTCAGCAGTGGAATATGTTGAAGATTGTGAATCCTATC
1 CCTGGTTAGCAGTGGAATATGTTGAAGATTGTGAATCCTATC
20762272 GCCCGGAGCA
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
43 2 0.03
44 66 0.89
45 6 0.08
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (44 bp):
CCTGGTTAGCAGTGGAATATGTTGAAGATTGTGAATCCTATCCT
Found at i:20762284 original size:44 final size:44
Alignment explanation
Indices: 20762196--20762299 Score: 129
Period size: 44 Copynumber: 2.4 Consensus size: 44
20762186 CATGGTTAGT
* ** *
20762196 AGTGGAATATGCTGAAGATGGTGAATCCTATCTTCCTAGTCAGC
1 AGTGGAATATGTTGAAGATGGTGAATCCTATCGCCCGAGTCAGC
*
20762240 AGTGGAATATGTTGAAGATTGTGAATCCTATCGCCCGGAG-CAGC
1 AGTGGAATATGTTGAAGATGGTGAATCCTATCGCCC-GAGTCAGC
* *
20762284 AGTGGAGTAGGTTGAA
1 AGTGGAATATGTTGAA
20762300 AATTACAAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
44 50 0.96
45 2 0.04
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (44 bp):
AGTGGAATATGTTGAAGATGGTGAATCCTATCGCCCGAGTCAGC
Found at i:20762448 original size:44 final size:44
Alignment explanation
Indices: 20762400--20785648 Score: 4003
Period size: 44 Copynumber: 543.2 Consensus size: 44
20762390 CCACTAACCT
*
20762400 TATCTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20762444 TATCTCCCTAGTCAGTAGTGGAATAGGTTAAAGATTGTGAGTTC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* **
20762488 TATCTCTCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20762532 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA-ACT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * ** * * * *
20762576 TATCTCCCTAAG-AAGTAGTAGAGCAGATCGAAG-TCGGTGAA-TCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGAT-TGT-AAGTCC
* * * * * ****
20762620 TATCTTCCCAAGAT-AGTAG-GGAAGCAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
20762663 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20762708 TATCTCCCTGGTCAG-CGATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAG-TGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20762752 TATCTCCCTGAG-AAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * * ** ** ** * *
20762796 TATCTTCCTAAG-CAGTAGT-AAAGCAGATCAAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * * ***
20762840 TATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGACACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * *
20762883 TTATATCCCCGTTCAGTAGTGAAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20762928 TATCTCACTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20762972 TATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20763016 TATCTCCCTGGCCAGCAATGG-A-A---T-AAG--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20763050 TATCTCCTTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20763094 TATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * ** * * ** * *
20763138 TATCTCCCTAAG-AAGTAGTGGAGCAGATCGAAGACAGCGAA-TCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * ****
20763182 TATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
20763225 TTATCTCCCTGGTCGGTAGTAGAATAGGTTGAAGAGTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20763270 TATCTCCCTAGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20763304 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * *
20763348 TATCTCCCTGAG-CAGTAGTGGAGA-AGGTTGAAAATTACAAATCT
1 TATCTCCCTG-GTCAGTAGTGGA-ATAGGTTGAAGATTGTAAGTCC
* ** ** * ** ** * *
20763392 TATCTCCCTAAG-CAGTAGCAGAGCAGATTGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*** * * ****
20763436 TATCTTCACAAAGT-AGTAG-GGAAGTAGATTTAAGCCACT-AG-CC
1 TATC-TC-CCTGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
20763479 TTATCTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCT
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * **
20763524 TATCTCCATGGTCAGCAGTGGAATAGGTTGAAGATTGCGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*** * * * *
20763568 TATCTCCCTCACCAATAGTGAAATAGGTTTAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
20763612 TAGCTCCCTGAG-CAGCAGTGTAGTAGGTTAAAAATTACAG-AAGT--
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATT---GTAAGTCC
* * * * * * ** *
20763656 TATCTCCCTAAG-CAATAGTAGAGTAGATCGAAGACGGTGAA-TCA
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * ** * *
20763700 TATCATCCCAAGGT-AGTTG-GGAAGGAGATTTAAG-CCGCT-AGGCT
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTG-TAAGTCC
* * *
20763744 TATCTTCCTGGTCAGTAGCGGAATAGGTTGACGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20763788 TATCTCCCTAGTCAGCAGTGGAATAGGCTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * * *
20763832 TATATCCCTGAG-CAGCGGTGGAGTAGGTTGCAA-ATTAT-AGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTG-AAGATTGTAAG-TCC
* * * * * * ** ** * *
20763876 TATCCCCCTAAG-CAGTAGTAGAACAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * ****
20763920 TATCTTCCCAAGGT-AGTAG-GGAAGTAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
20763963 TTATCTTCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20764008 TATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** *
20764052 TATCTCCCTTGTCAACAGTGGAATAGGTTGAAGATTGTAAGTAC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20764096 TATCTCCCTGGTCAGCAATGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20764130 TATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20764174 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTACG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGA-T-TGTAAGTCC
* * * * * * *
20764218 TATGTCCTTGAG-CAGCAGTGGAGTAGGTT-AAAAAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** ** * * ** * *
20764262 TATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGACGGCGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * * ****
20764306 TACCTTCCTAAAGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATCTCCCT--GGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20764349 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20764394 TATCTCCCTGGTCAGCAGT-GAA-A---T-ACG--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20764428 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20764472 TATCTCCCTGGTCAGCAGTGTAATAGATTGAAGATTTTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * ** *
20764516 TATCTCCCTGAG-CAGCAGTGGAGTAGGATGAAAATTACAGGTCC
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * ** * * ** ** * *
20764560 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * ****
20764604 TATCTTTCCAAGGT-AGTAG-GGAAGCAGATAT-AAGCCACT-AG-CC
1 TATC--TCCCTGGTCAGTAGTGGAA-TAGGT-TGAAGATTGTAAGTCC
* * *
20764647 TTATCTCTCTGCTAAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20764692 TATCTCCCTAGTCAGCAGTGGAATAGGTTGATGATTATGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** *
20764736 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20764780 AATCTCCTTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * **
20764814 TATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TTT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20764858 TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
** * * * * *
20764902 TATCTCCCTGACCAGCAGTGGAGTTGGTTGAAAATTAT-AGATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
*** * * * * ** * *
20764946 TATCT-CCTAAAACAGTAGTGGAGTAGATAGAAAACGGCGAA-TCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * **** *
20764990 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-CG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
20765033 TTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20765078 TATCTCCCAGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20765112 TATCTCCCTTGTCAGAAGTGGAATAGGTTGAATATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20765156 TATCTCTCTGGTCAGTAGTGTAATAGGTTGTAGATTGTAAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20765200 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * ** * ** * * ** ** * *
20765244 TAACTCTCTAAAT-AGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * ****
20765288 TAAAT-TCCCAAG-CTAGTAG-GGAAGCAGATTTG-AGCCACT-AG-CC
1 T--ATCTCCCTGGTC-AGTAGTGGAA-TAG-GTTGAAGATTGTAAGTCC
* * * *
20765331 TTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20765376 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** *
20765420 TATCTCCCTGGTCAACAGTGGAATA----G--G--TG-AA-TCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20765454 TATCTCCCTGGTCAGTAGTGGAATAGGTTGATGATTGT-AGATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
* * *
20765498 TATCTCCCTGAG-CAGCAGTGGAGA-AGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGA-ATAGGTTGAAGATTGTA-AG-TCC
* * ** * * ** ** * *
20765542 TATCTCCCTAGG-CATTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ****
20765586 TATCTTCCTAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATCTCCCT--GGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20765629 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * *
20765674 TATCTCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
**
20765718 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20765762 TATCTCCCTGGTCAGCAGTGG---A--TT--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20765796 GATCTCCCTGGTGAGCAGTAGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20765840 TATCTCCCTGGTCAGCAATGGAATAGGCTGAAGATTGTGAA-TCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20765884 TATGTCCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * * *
20765928 TATCT-CCTAAAG-CAGTAGTGGAACA-GATGAAGA-CG-ACGAATCT
1 TATCTCCCT--GGTCAGTAGTGGAATAGGTTGAAGATTGTA--AGTCC
* * ** ** ***
20765971 TATCTTCCCAAGGT-AGTAG-GGAAGAAAATTTCAGCCAGT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20766014 TTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20766059 TATCTCCCTAGTCAGCA-TGGAATAGGTTGAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20766102 TATCTCCCTGGTCAGCAGTGGAAT--G--G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20766136 TATCTCCCTGGTCAGCAGTGGAATCGGTTGAAGATTTTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20766180 TATCTCCCTCGTCAGCAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20766224 TATGTGCCTGAG-CAGCAGTGGAATAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * * * *
20766268 TATCTCCCAAAG-CAGTAGTGGAACA-GATGAAGA-CGATGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-T-AAGTCC
* * * ** ****
20766311 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTCAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
20766354 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20766399 TATCTCCCTAGTCAGTAGTGGAATAGGTTGAGGATTCTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * *
20766443 TATATCCCTGGTCAACACTGGAATAGGTTGAAGATTCTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20766487 TCTCTCCCCGGTCAGCAGTGAAATAGG-T---GA----AA--CC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20766521 TATCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
*
20766565 TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
** * *
20766609 TATCTCCCTGGTCAACAGCGG---A--TT--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * * *
20766643 TATCTCCCTGGTCAACAGTGGAATAAGTTAAAGATTCTGAA-TAC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20766687 TATCTCCCTGAG-CAGCAGTGGAGA-AGGTTGAAAATTACTGA-TCT
1 TATCTCCCTG-GTCAGTAGTGGA-ATAGGTTGAAGATT-GTAAGTCC
* * ** * * ** ** * *
20766731 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ****
20766775 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
20766818 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20766863 TATCTCCCTGGTCTGCAGTGAAATAGG-AGAATACTT-T--GTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGA-TTGTAAGTCC
* * *
20766904 ---CT---T-GTCAGTAATGGAATAGGTTGAAGATTATGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20766941 TATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20766985 TATCTCCCTCGTCAATAGTGAAATAGGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20767029 TAGCTCCCTGAG-CAGCAGTGGAGTAGGTTAAAAATTACAG-AAGT--
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATT---GTAAGTCC
* * * * * * * * **
20767073 TATCTCCCTAAG-CAGTAGTAGAGTAGATCGAAG-TGGCGAATTTT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * **** *
20767117 TAT-TCCCAAGGT-AGTAG-GGAAGCAGATTTAAG-GCACAAG-CGT
1 TATCTCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTC-C
* * *
20767159 TATCTTCCTGGTTAGTAGTGGAATAGGTTGACGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20767203 TATCTCCCTAGTCAGCAGTGGAATAGGCTGAAAATTTTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * **
20767247 AATATCCCTGAG-CAGCAGTGGAGTAGGTTGCAA-ATTAT-AGATAT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTG-AAGATTGTAAG-TCC
* * ** * * ** ** * *
20767291 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * **
20767335 TATCTTCCCAAGGT-AGTAG-GGAAGTAGATTTAAGCTACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
20767378 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20767423 TATCTCCCTGGTCAGCAGCGGGATAGGTTGAAGATTG-AGAGACT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTA-AGTCC
** * * * *
20767467 TATCTCCCTGGTCAACAATAGAATAGGTTTAAGATTGTAAGTAC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20767511 TATCTCCCTGGTCAGCAATGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * *
20767545 TATCTCCCTGGTCAGCAGTGGACTTGGTTAAAGATTGGGAA-TCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-GTAAGTCC
* * * *
20767589 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * * *
20767633 AATGTCCTTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
*** ** ** * ** ** * *
20767677 TATCTTCCAAAG-CAGTAGTGGAGCAAATCGAAGACGGCGATTCT
1 TATC-TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * ** ** ***
20767721 TATCTGCCCAAGGT-AGTAG-GGAAGAAAATTTCAGCCAGT-AG-CC
1 TATCT-CCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20767764 TTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * ****
20767809 TATCTCCCTAGTCAGCA-TGGAATAGGTTTAAGCCACT-AG-CC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20767850 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20767895 TATCTCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * *
20767929 TTTTTCCCTTGTTAGTAGTGGAATAGGTTGAAGATTATGAGTCCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT-CC
* * *
20767974 TATCTCTCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20768018 TATCTCCCTCGTCAATAGTGAAATAGGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * * *
20768062 TAGCTCCTTGAG-CAGCAGTGTAGTAGGTTAAAAATTACAG-AAGT--
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATT---GTAAGTCC
* * * * * * ** *
20768106 TATCTGCCTAAG-CGGTAGTAGAATAGATCGAAGACGGTGAA-TCA
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
20768150 TATCAT-CCTAAGGT-AGTAG-GGAAGGAGATTTAAGA-CGCT-AGGCT
1 TATC-TCCCT--GGTCAGTAGTGGAA-TAGGTTGAAGATTG-TAAGTCC
** * *
20768194 TATCTTTCTGGTCAGTAGCGGAATAGGTTGACGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20768238 TATCTCCCTAGTCAGTAGTGGAATAGGCTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20768282 TATATCCCTGAG-CAGCAGTGGAGTAGGTTGCAA-ATTAT-AGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTG-AAGATTGTAAG-TCC
* * * ** * * ** ** * *
20768326 TATCTCCTTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * ****
20768370 TATCTTCCCAGGGT-AGTAG-GGAAGTAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20768413 TTATCTCCCTGGTCAGTAGTAGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20768458 TATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * *
20768502 TATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTAC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20768546 AATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20768580 TATCTCCCTGGTCAGAAGTGGACTTGGTTGAAGAGTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20768624 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * *
20768668 TATATCCTTGAGT-AGTAGTGGAGTAGGTTGAAAATT-AAAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
** ** * * ** * *
20768712 TATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGAAGGCGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * * ****
20768756 TACCTTCCCAAGGT-AGCAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
20768799 TTATCTCCCGGGTCAGTAGTGGAATAGGTTGAAGACTGTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20768844 TATCTCCCTGGTCAGCAGT-GAA-A---T--AG---GTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20768878 TATCTCCCTTGTCAGTAGTGCAATAGGTTGAAGATTATGATTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20768922 TATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-TCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20768966 TATCTCCCTGAG-CAGCAGTGGAGTATGTTGAA-AAT-TACAGATCC
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * ** * * ** ** * *
20769010 TATTTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * * **
20769054 TATCTTTCCAAGGT-AGTAG-GGAAGCAGATAT-AAGCTACT-AG-CC
1 TATC--TCCCTGGTCAGTAGTGGAA-TAGGT-TGAAGATTGTAAGTCC
* * *
20769097 TTATCTCCCTCGTAAGTAGTGGAATAGGTTGATGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * * *
20769142 TATCTCCCTAGTCAACAGTGGAATAGGTTGACGATTATGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * ** * *
20769186 TATCTCCCTAGTTAACAGTGGAATAGATTGAAGATTGTAAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20769230 AATCTCCTTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20769264 TATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TTC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20769308 TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
** * * * * * *
20769352 TATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTAT-CGATCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
** * * * ** * *
20769396 TATCTCCCAAAG-CAGTAGTGGAGTAGATCGAAGACGGCGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * **** *
20769440 TATCTTCCCAAGGT-AGTAG-GAAAGAATA--TTTAAGCCACT-CG-CC
1 TATC-TCCC-TGGTCAGTAGTG---GAATAGGTTGAAGATTGTAAGTCC
* * *
20769483 TTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20769528 TATATCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20769562 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * ** *
20769606 TATCTCTCTGGTCAGTAATGTAATAGGTTGTTGATTGTAAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20769650 TATGTCCCTGAG-CAGCAGTTGAGTAGGTTGAA-AAT-TACAGATCC
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* ** * * ** ** * *
20769694 TATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAGACAGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * * ****
20769738 TATATTCCCAAGGT-AGTA-AGGAAGCAGATTTAAGCCACT-AG-CC
1 TAT-CTCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20769781 TTATCTCCCTGGTCGGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20769826 TATCTCCCTAGTCAGCAGTGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20769860 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
20769904 AATCTCCCTGAG-CAGTAGTGGAGA-AGGTTGCAA-ATTAT-AGAT-C
1 TATCTCCCTG-GTCAGTAGTGGA-ATAGGTTG-AAGATTGTAAG-TCC
* * * ** * * * * * *
20769947 TGATCTCCCTAAG-CATTAGTAGAGCAGATCGAACA-CG-ACGATTCT
1 T-ATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTA--AGTCC
* * * * ****
20769992 TATATTCCCAAGGT-AGTA-AGGAAGTAGACTT-AAGCCACT-AG-CC
1 TAT-CTCCC-TGGTCAGTAGTGGAA-TAG-GTTGAAGATTGTAAGTCC
* * * *
20770035 TTATTTCACTGGTTAGTAGTGGAATAGGTTGAAGATTGTAAGTCT
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * **
20770080 TATCTCCATGGTCAGCAGTGGAATAGATTGAAGATTGCGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * *
20770124 TATCTCCCTCATCAATAGTGAAATAGGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
20770168 T-TGCTCCCTGAG-CAGCAGTGGAGTAGATTAAAAACTACAG-AAGT--
1 TAT-CTCCCTG-GTCAGTAGTGGAATAGGTTGAAGA-T--TGTAAGTCC
* * * * * ** * *
20770212 TATCTCCCTAAG-CAGTAGTAGAGTAGATCGAAGACGGCGAA-TCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * ****
20770256 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
20770299 TTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20770344 TATCTCCCTGGTCTGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20770378 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20770422 TATCTCCCTGGTCAGCAGCGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20770466 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTATAAATCC
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * ** * * * ** * *
20770510 TATCTCCCTAAG-CAGAAGTGGAGCAGATCGAAGATGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * **** * *
20770554 TATCTTTCCAAT-GT-AGTAG-GCAAGCAGATAT-AAGCCACT-AGGCT
1 TATC--TCC-CTGGTCAGTAGTGGAA-TAGGT-TGAAGATTGTAAGTCC
* *
20770598 TATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20770642 AATCT-CCTCGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCC
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * *
20770686 TATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGTATGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * * *
20770730 AAACTCCTTGGTCTGCAGT-GCA-A--TTG--G--TG-AA-TTC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20770764 TATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20770808 TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
** * * * * * *
20770852 TATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTAT-CGATCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
** * * * ** * *
20770896 TATCTCCCAAAG-CAGTAGTGGAGTAGATCGAAGACGGCGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * **** *
20770940 TATCTTCCCAAGGT-AGTAG-GAAAGAATA--TTTAAGCCACT-CG-CC
1 TATC-TCCC-TGGTCAGTAGTG---GAATAGGTTGAAGATTGTAAGTCC
* * *
20770983 TTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20771028 TATATCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20771062 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * ** *
20771106 TATCTCTCTGGTCAGTAATGTAATAGGTTGTTGATTGTAAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * ** *
20771150 TATGTCCCTGAG-CAGCAGTTGAGTAGGTTGAAAATTACATA-TCG
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AGTCC
* * * * * * * ** * * *
20771194 TATCTCTCTAAGT-AGTTGTAGAGTAGATCGAAGACGGCAATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * * ** * ****
20771238 TATATTCCCAAGCCGGTAG-GGACGCAGATTTG-AGCCACT-AG-CC
1 TAT-CTCCCTGGTCAGTAGTGGA-ATAG-GTTGAAGATTGTAAGTCC
* * * *
20771281 TTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20771326 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* **
20771370 TATCTCCCTAGTCAACAGTGGAATAGG-TG-A-A---T-A---C
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20771404 TCTCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * * *
20771448 TATCTCCTTGAG-CAGCAGTCGAGTAGGTTGAAAATTAT-AGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
** ** * * ** * * *
20771492 TATCTCCCAAAG-CAGTAGTGGACCAGATCGAAGACGGCGAA-ACT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * ****
20771536 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20771579 TTATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20771625 TATCTCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * *
20771659 TTTGTCCCTTGTTAGTAGTGGAATAGGTTGAAGATTATGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * ** *
20771703 TTTCTCTCTAGTCAACAGTGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20771747 TATCTCCCTCGTCAATAGTGAAATAGGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20771791 TAGCTCCCTGAG-CAGCAGTGGAGTAGGTTAAAAATTACAG-AAGT--
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATT---GTAAGTCC
* * * * * * * *
20771835 TATCTCCCTAAG-CAGTAGTAGAGTAGATCGAAGA-GGCGAA-TCA
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * * ** * *
20771878 TATATTCCCAAGGT-AGTAG-AGAAGCAGATTTAAG-CCGCT-AGGCT
1 TAT-CTCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTG-TAAGTCC
* * * * *
20771922 TATCTTCATTGTCAGTAGCGGAATAGGTTGACGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20771966 TATCTCTCTAGTCAGTAGTAGAATAGGCTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * * *
20772010 TATATCCCTGAG-CAGCAATGGAGTAGGTTGCAA-ATTATAAATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTG-AAGATTGTAAGTCC
* * * ** * * * ** * *
20772054 TATCTCCTTAAG-CAGTAGTAGAGCAGATCGAAGATGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * ****
20772098 TATCTTCCCAGGGT-AGTAG-GGAAATAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGG-AATAGGTTGAAGATTGTAAGTCC
* *
20772141 TTATCTCCCTGGTCAGTAGTAGAATAGGTGGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20772186 TATCCCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * *
20772230 TATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTAC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20772274 AATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20772308 TATCTTCCTGGTCAG-AGGTGGACTTGGTTGAAGAGTGTGAA-TCC
1 TATCTCCCTGGTCAGTA-GTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20772352 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * *
20772396 TATGTCCTTGAGT-AGCAGTGGAGTAGGTTGAA-AAT-TAGAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** ** * * ** * *
20772440 TATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGAAGGCGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * ****
20772484 TACCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
20772527 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20772572 TATCTCCCTGGTCAGCAGT-G-A-A--TT--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20772606 TATCTCCCTTGTCAGTACTGGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
** * * *
20772650 TATCTCCCTGGTCAGCGGTGTAATAGGTTGTAGATTGTAAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20772694 TATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * ** * * * * * *
20772738 TAACTCTCTAAGT-AGTAGTAGAGCAGATCGAAGA-CGGAGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTA-AGTCC
* ** * * * ****
20772782 TATATTCCCAAG-CTGGTAG-GGAAGCAGATTTG-AGCCACT-AG-CC
1 TAT-CTCCCTGGTC-AGTAGTGGAA-TAG-GTTGAAGATTGTAAGTCC
* * * * *
20772825 TTATCTCCCTGGTCAGTAATGGAACAGGTTAAAGGTTATAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20772870 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * *
20772914 TATCTCCCTGGTCAACAATGG-A-A---T--AG-CTG-AA-TCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20772948 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20772992 TATCTCCCTGAG-CAGCAGTGGAGA-AGGTT-AAAAAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGA-ATAGGTTGAAGATTGTA-AG-TCC
* * * ** * * * ** ** * *
20773036 TATCTCCTTAAG-CAGTAGTAGAGCAGATCGAATACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * * * ****
20773080 TATCTTCTCAAGGT-AGCAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TC-CCTGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20773123 TTATCTCCCCGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * *
20773168 TGTCTCCCTAGTCAGCAGTGGTATAGGTTGAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * ** *
20773212 TATCACCCAGGTCAACAGTGGAATAGGTCGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20773256 TATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20773290 GATCTCCCTGGTGAGCAGTAGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20773334 TATCTCCATGGTCAGCAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * * *
20773378 TATGTCCCTGAG-CACCAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * * ** *
20773422 TATCTCCCAAAG-CAGTAGTGGAACA-GATGAAGACGGTGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * ** ****
20773465 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTCAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20773508 TTATCTCCCTGGTCAGTAGTGGAAT-GATTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAG-GTTGAAGATTGTAAGTCC
* * * * * *
20773553 TATC-CCCTAGTCAGCAGTGGAATAGATTGAGGATTCTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20773596 TATATCCCTGGTCACTGGTGGAATAGGTTCAAGATGGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20773640 TATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** *
20773674 TATCTCCCTGGTCACCAGTAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * **
20773718 TATCTCCCTGGACAGCAACGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
20773762 TATGTTCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TAGAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* ** ** * ** * *
20773806 TATCTCCCAAGG-CAGTAGTGGAGCAAATCGAAGACGGCGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * * *****
20773850 TACCTTCCCAAGGT-AGTAG-GAAAGAAGATTTAACCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
20773893 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20773938 TATCTCCCGGGTCAGCAGT-CAA-A--TT--AG--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20773972 TATCTCCCTTGTCAGTAGTGGAATATGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
*
20774016 TATCTCCCTGGTCAGTAGTGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20774060 TATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * ** * * ** ** * *
20774104 TATCTCTCTAAGT-AGTTGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * * * **
20774148 TATATTCCCAAG-CTGGTAG-GGAAGCAGATTTG-AG-TCACT-AG-CC
1 TAT-CTCCCTGGTC-AGTAGTGGAA-TAG-GTTGAAGAT-TGTAAGTCC
* * * * * *
20774191 TTATCTCCCTCGTCAGTAATTGAACAGGTTGAAGGTTATAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20774236 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20774280 TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
** * * *
20774324 TATCTCCCTGAG-CAGCGGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** ** * * ** * *
20774368 TATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGACGGCGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * ****
20774412 TATCTTCCCAAGAT-AGTAG-GGAATAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAAT-AGGTTGAAGATTGTAAGTCC
* *
20774455 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAAATTGTAAGTCG
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * *
20774500 AATCTCACC-GATCAGCAGTGGAATATGTTGACGATTGTGAGTCC
1 TATCTC-CCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * *
20774544 TATCTCCCTGGTCAACATTGGAATAGGTTGAAGATTGTACGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* **
20774588 AATCTCGTTGGTCAGTAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20774622 TATCTCCCTGGTTAGCAGAGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20774666 TATCTCCCTGGTCAGCAATAGAATAGATTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
** * * * * *
20774710 TATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTAT-AGATCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
** ** * ** *
20774754 TATCTCCCAAAG-CAGTAGTGGAGCAGATTGAAGACGGCGAATGT--
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAA-GTCC
* * * * **** *
20774798 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-CG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * * *
20774841 TTATCTCCGTGGTCAGTAGGGGAATAGGTTGAATATTGCAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20774886 TATCTCCCTGGTCAGCAGT-GAGATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGA-ATAGGTTGAAGATTGTAAGTCC
* *
20774920 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20774964 TATCTCTCTGGTGAGTAGTGTAATAGGTTGTAGATTGTAAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * * **
20775008 TATCTCCCTGAG-CAGCAGTGTAGTAGGTTTAA-AAT-AACAGATAT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * ** * * ** ** * *
20775052 TAACTCTCTAAGT-AGTAGTAGAGCAGATCGAAGACAGCGACTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * * * ****
20775096 TATAGTCCCAAG-CTGGTAG-GGAAGCAGATTTG-AGCCACT-AG-CC
1 TAT-CTCCCTGGTC-AGTAGTGGAA-TAG-GTTGAAGATTGTAAGTCC
* * * *
20775139 TTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20775184 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * *
20775228 TATCTCCCTCGTCAACAGTTGACTA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
20775262 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * ** *
20775306 TATCTCCCTAAG-CAGTAGTGGAGA-AGGTTGAAAATT-CCAGATCT
1 TATCTCCCT-GGTCAGTAGTGGA-ATAGGTTGAAGATTGTAAG-TCC
* * ** * * ** ** * **
20775350 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTGT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * ** * ****
20775394 TATCTTCCCAAGGT-AGTAG-GGAAGAACATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
20775437 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20775482 TATCTCCCTAGTCAGGAGTGGAATAGGTTGAAGATTCTGAGTTC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * *
20775526 TATCTCCTTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** *
20775570 TATCTCCCGGGTCAACAGTGAAAATAGG-T---GA----AA--CC
1 TATCTCCCTGGTCAGTAGTG-GAATAGGTTGAAGATTGTAAGTCC
* * **
20775605 TATCTCTCTGATCACCAGTGGAATAGGTTGAAGATTTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGA-TTGT-AAGTCC
*
20775650 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
20775694 TATCTCCCTGGTCAGGAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
20775738 TATGAT-CCTGAG-CAGCAGTGGAGTAGGTTGAAAATTAT-AGATCT
1 TAT-CTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
*** * * ** *
20775782 TATCTCCAAAAG-CAGTAGTGGAACA-GATGAAGACGGTGAA-TCT
1 TATCTCC-CTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * ** ****
20775825 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTCAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
20775868 TTATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20775913 TATCTCTCGGGTCAGTAGT-CAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20775947 TATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGTA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20775991 TATCTCCCCGGTCAGCAGTGTAATAGGTTGAAGATTTTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * ** *
20776035 TATCTCCCTAAG-CAGTAGTGGAGA-AGGTTGAAAATT-CCAGAT-T
1 TATCTCCCT-GGTCAGTAGTGGA-ATAGGTTGAAGATTGTAAG-TCC
* * ** * * ** ** * **
20776078 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTGT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ****
20776122 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
20776165 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * *
20776210 TATCTCCCTAGTCAGGAGTGGAATAGGTTCAAGATTCTGAGTTC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * *
20776254 TATCTCCTTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** **
20776298 TATCTCCCTAGTCAACAGTAAAATAGG-T---GA----AA--CC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20776332 TATCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
*
20776376 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
20776420 TATCTCCCTGGTCAGGAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
20776464 TATGAT-CCTGAG-CAGCAGTGGAGTAGGTTGAAAATTAT-AGATCT
1 TAT-CTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
* * * * *
20776508 TATCT-CCAGAAG-CAGTAGTGGAACA-GATGAAGATGGTGAA-TCT
1 TATCTCCCTG--GTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * ** ****
20776551 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTCAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
20776594 TTATCTCCCTAGTTAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20776639 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * *
20776683 TATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20776727 TATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20776761 TATATCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTCAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20776805 TATCTCCCTCGTCAGCAATGAAATAGGTTGAAGGTTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * * *
20776849 TATGTTCCAGAG-CAGCAATGGAGTAGGTTGAA-AAT-TAGAGATCC
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* ** ** * * ** * *
20776893 TATCT--C---TCA-AAGCAGAGCAGATCGAAGACGGCGAA-TCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * **** *
20776931 TACCTTCCCAAT-GT-ATTAG-GGAAGAAGATTTAAGCCACT-AGTCT
1 TATC-TCCC--TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
20776975 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTTTAAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20777019 TATCTCTCGGGTCAGTAGT-CAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20777053 TATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGTA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20777097 TATCTCCCCGGTCAGCAGTGTAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * * *
20777141 TATCTCCCTAAG-CAGCAATGGAGTAGGTTGAAAATTAT-AGATCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
** * ** * ** ** ** * *
20777185 TATCTCCCTAAAT-AGTAGTAGAGCAGATCAAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * * * ****
20777229 TATATTCCCAAG-CTGGTAG-GGAAGCAGATTTG-AGCCACT-AG-CC
1 TAT-CTCCCTGGTC-AGTAGTGGAA-TAG-GTTGAAGATTGTAAGTCC
* * * * * *
20777272 TTATCTCCTTGGTCAGTAATAGAACAGGTTGAAGCTTATAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20777317 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-GGACC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20777360 GTATCTCCCTGGTCAATAGCGGAACA----G--G--TG-AA-TCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20777395 TATCTCCCTTGTCAGCAGTGGAATAGGTTGAAGATTCTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20777439 TATCTCCCTGAG-CAGCAGGGGAGA-AGGTTGAA-AAT-TACAGAT-C
1 TATCTCCCTG-GTCAGTAGTGGA-ATAGGTTGAAGATTGTA-AG-TCC
* * ** * * ** ** * *
20777482 T-TCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ****
20777525 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
20777568 TTATCTCCCTGGTAAGTAGTGGAATAGGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20777613 TATCTCCCTGGTCTGCAGT-G-A-AGATT----A-TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
20777647 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20777691 TATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * *
20777735 TATCTCCCGGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20777779 TATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20777813 TATATTCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * *
20777857 TATCTCTCTGGTCAACATTGGAATAGGTTGAAGATTGTATGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20777901 AATCTCCTTGGTCTGCAGTGGAATAGG-TG-A-A---T---T-C
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20777935 TATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20777979 TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
20778023 TATCTCCTTGAG-CAGCAGTGGAGTAGGTT-AAAAAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** ** * * * * *
20778067 TATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGA-CG-ACGAATCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTGTA--AGTCC
* * * * * * ****
20778111 TATATTCCCAAGAT-AGTAG-GGAAGAAGATTTAAGCCACT-A-TCC
1 TAT-CTCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20778154 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTTC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20778199 TATCTCCCTAGTCAGTAGTGGAATAGGTTGACGATTGTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* **
20778243 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTC-C
** *
20778288 -ATCTCGTTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20778321 TATCTCCCTGATTAGCAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20778365 TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
** * * * * *
20778409 TATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTAT-AGATCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
** ** * ** *
20778453 TATCTCCCAAAG-CAGTAGTGGAGCAGATTGAAGACGGCGAATGT--
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAA-GTCC
* * * * **** *
20778497 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-CG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20778540 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20778585 TATCTCCCTGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20778619 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTATGAA-TCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20778663 TATCTCTCTGGTCGGTAGTGTAATAGGTTGTAGATTGTAAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * **
20778707 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTTAA-AAT-TACAGATAT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * ** * ** ** ** * *
20778751 TAACTCTCTAAGT-AGTAGTAGAGCAGATCAAAGACAGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * * ** ****
20778795 TATATTCCCAAG-CTGGTAG-GGAAGCAAATTTG-AGCCACT-AG-CC
1 TAT-CTCCCTGGTC-AGTAGTGGAA--TAGGTTGAAGATTGTAAGTCC
* * * * *
20778838 TTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCT
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20778883 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAATATTGTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** *
20778927 TATCTCCCTGGTCAACAGTTGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20778961 TATCACCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20779005 TATCTTCCTAAG-CAGTAGTGGAAAAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * ** * * ** ** * **
20779049 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTGT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ****
20779093 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
20779136 TTATCTCCCTGATCAGTAGTGGAATAGGTTGAACATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20779181 TATCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** *
20779225 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20779269 TATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20779303 GATCTCCCTGGTCAGCAGTGGAATTGGTTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
20779347 TATCTCCCTGGTCAGGAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20779391 TATGAT-CCTGAG-CAGCAGTGGAGTAGGTTTAA-AAT-TACAGAT-C
1 TAT-CTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * * ** *
20779434 TCATCTCCCAAAG-CAGTAGTGGAACA-GATGAAGACGGCGAATGT--
1 T-ATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAA-GTCC
* * * **
20779478 TATCTTCCCATAGT-AGTAG-GGAAGAAGATTTCAGCCA-T-T-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAG--ATTGTAAGTCC
* * *
20779521 TTATCTCCCTGGTCAGTAGTAGAATAGGCTGAGGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20779566 TATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTTC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * * *
20779610 TATCTCCTTGGTCAACAATGGAAGAGGTTGAAGATTCTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20779654 TATCTCCCTGGTCAGCAGTGGAATAGG-T---GA----AA--CC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20779688 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGAATGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20779732 TATCTCCCTGGTCAGCAATGGAATATGTTGAAGGTTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20779776 TATGAT-CCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TAT-CTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * * * ** * *
20779820 TATCTCCCAAAG-CAGTAGTTGAACA-GATGAAGACGGCGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * ** ****
20779863 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTCAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
20779906 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20779951 TATCTCCCTAGTCAGCAGTGGAATACGTTGAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** *
20779995 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20780039 TGTCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20780073 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20780117 TATCTCCCTGGTCAGCAATGAAATAGGTTGAAGGTTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * * *
20780161 TATGTTCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TAGAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* *** ** * * ** *
20780205 TATCACTCAAAG-CAGTAGTGGAGCAGATCGAAGACGGCGAATGTTACC
1 TATCTC-CCTGGTCAGTAGTGGAATAGGTTGAAGATTG-TAA-G-T-CC
* * * * ****
20780253 T-TC-CCAAT-GT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATCTCC-CTGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
20780292 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20780337 TATCTCTCGGGTCAGCAGT-CAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20780371 TATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGTA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
** * *
20780415 TATCTCCCTGGTCAACAGTGTAATAGGTTTAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * ** * * *
20780459 TATCTCCCTAAG-CAGCAACGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * ** * * ** ** * *
20780503 TATCTCCCTAAGT-AGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *** * * ** * * **** *
20780547 TATATTCCC-AACCTGGAAAGGAAGCAGATTTG-AGCCACT-AGCCC
1 TAT-CTCCCTGGTCAGTAGTGGAA-TAG-GTTGAAGATTGTAAGTCC
* * * *
20780591 TATCTCCTTGGTCAGTAATGGAATAGGTTGAAGGTTATAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20780635 TATCTGCCTGGTCAGTAGTGGAATAGGTTAAAGTTTGTGAA-TCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
** *
20780679 TATCTCCCTGGTCAACAGCGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20780713 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20780757 TATCTCCCTGAGT-AGCAGGGGAGA-AGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGA-ATAGGTTGAAGATTGTA-AG-TCC
* * ** * * ** ** * **
20780801 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTGT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ****
20780845 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
20780888 TTATCTCCGTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20780933 TATCTCCCTGGTCTGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20780967 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20781011 TATCTCCCTGGTCAGCAGCGTAATAGGTTGAAGATTGTGAA-TCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20781055 TATCACCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTAT-AGATCC
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
* * ** * * * * ** * *
20781099 TATCTCCCTAAG-CAGCAGTGGAGCAGATCGAATATGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * * * * ****
20781143 TATCTTTCCAAGGT-AGTAG-GCAAGCAGATAT-ATGCCACT-AG-CC
1 TATC--TCCCTGGTCAGTAGTGGAA-TAGGT-TGAAGATTGTAAGTCC
* * *
20781186 TTATCTCCCTGGTCAGTAGTAGAATAGGCTGAAGATTGTAAGTCG
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * *
20781231 AATCTCACC-GATCAGCAGTGGAATATGTTGACGATTGTGAGTCC
1 TATCTC-CCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * **
20781275 TATCTCCCTGGTCAACAGTGGAATAGATTGAAGATTGTCTGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20781319 AATCTCCTTGGTCTGCAGTGCAATAGG-TG-A-A---T---T-C
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20781353 TATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20781397 TATCTCCCTGGTTAGCAATAGAATAGGTTGACA-ATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGA-AGATTGT-AAGTCC
* * *
20781441 TATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * ** * * * *
20781485 TATCTCCCAAAG-CAGTAGTAGAGCAGATCGAAGA-GGTCGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTGT--AAGTCC
* * * * * ****
20781529 TATCTTCCCAAGAT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
20781572 TTATCTCCCTGGTCAGTAGTGGAATGGGTTGAAGATTGTAAGTTC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20781617 TATCTCCCTAGTCAGCAGGGGAATAGGTTGACGATTGTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** *
20781661 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** *
20781705 AATCTCGTTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20781739 TATCTCCCTAGTTAGCAGTGGAATAGGTTGAATATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20781783 TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * * * * * *
20781827 TATCTCCTTGACCAGCAGTGGAGTAGGTTGAAAAATAT-AGATCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
** ** * ** *
20781871 TATCTCCCAAAG-CAGTAGTGGAGCAGATTGAAGACGGCGAATGT--
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAA-GTCC
* * * * **** *
20781915 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-CG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20781958 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20782003 TATCTCCCTGGTCAGCAAT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20782037 TATCTCCCTTGTCAGTAGTTGAATAGGTTGAATATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20782081 TATCTCTCTGGTCAGTAGTGTAATAGGTTGTAGATTGTAAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * **
20782125 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATAT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * ** * * ** ** * *
20782169 TAACTCTCTAAGT-AGTAGTAGAGCAGATCGAAGACAGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * * * ****
20782213 TATATTCCCAAG-CTGGTAG-GGAAGCAGATTTG-AGCCACT-AG-CC
1 TAT-CTCCCTGGTC-AGTAGTGGAA-TAG-GTTGAAGATTGTAAGTCC
* * * * *
20782256 TTATCTCCCTGGTCAGTAATGGAACAGGTTAAAGGTTATAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20782301 TATCTCCCTGGTCAGTAATGAAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** *
20782345 TATCTCCCTAGTCACCAGTGGACTA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20782379 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20782423 TATCTCCCTAAG-CAGTAGTGCAGA-AGGTTGAA-AAT-TACAGATCT
1 TATCTCCCT-GGTCAGTAGTGGA-ATAGGTTGAAGATTGTA-AG-TCC
* * ** * * ** ** * *
20782467 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ****
20782511 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
20782554 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20782599 TATCTCCCTAGTCTGCAGT-GAA-A---T-AAG--TG-AA-TCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20782633 TATCTCCCTTGTCAGTAGTGTAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20782677 TATCTCCCTGGTCAGCAGCGTAATAGGTTGAAGATTGTGAA-TCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20782721 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTAT-AGATCC
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
* ** * * * ** * *
20782765 TATCTCCCTAAGT-AGTAGTGGAGCAGATCGAAGATGGCGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * ****
20782809 TATCTTTCCAAT-GT-AGTAG-GCAAGCAGATAT-AAGCCACT-AG-CC
1 TATC--TCC-CTGGTCAGTAGTGGAA-TAGGT-TGAAGATTGTAAGTCC
* * *
20782852 TTATCTCCCTGGTCAGAAGTGGAATAGGTTAAAAATTACAG-AAGT--
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT---GTAAGTCC
* * * * * ** * *
20782897 TATCTCCCTAAG-CAGTAGTAGAGTAGATCGAA-AAGGCGAA-TCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * ****
20782940 TATATTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AG-CC
1 TAT-CTCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * *
20782983 TTATCTTCCTTGTCATTAGTGGAATAGGTTGACGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20783028 TATCCCCCTAGTCAGCAGTGGAATAGGCTGAAAATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * *
20783072 TATATCCCTGAG-CAGCAGTGGAGTAGGTTGCAA-ATTAT-AGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTG-AAGATTGTAAG-TCC
* * ** * * ** * * *
20783116 TATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGTGATTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * ****
20783160 TATCTTCCCAAGGT-AGTAG-GGAAGTAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
20783203 TTATCTCCCTGGTCAGTAATGGAATAGGCTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20783248 TATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGGTTGTGAGTCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * *
20783292 TATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTAAGTAC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20783336 TATCTCCCTGGTCAGCAATGGAATAGG-T----A----AA-TCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20783370 TATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20783414 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * * *
20783458 TATGTCCTTGAG-CAGCAGTGGAGTTGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * ** * * ** ** * *
20783502 TATCTCCCAAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * ** ****
20783546 TATCTTTCCAAGGT-AGTAG-GGAAGTAGATTTCAGCCACT-AG-CC
1 TATC--TCCCTGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
*
20783589 TTATC-CCTCTGGTCAGTAGTGGAATAGGTTGAAGACTGTAAGTCC
1 -TATCTCC-CTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * *
20783634 TATCTCCTTAGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** *
20783678 TATCTTCCTGGTCAACAGTGGAATAGGTTAAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20783722 TATCTCCCTGGTCAGCAATGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20783756 TATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTG-AGAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTA-AGTCC
* * * *
20783800 TGTCTCCCTGAG-CAGTAGTGGAGTAGGTCGAAAATTACAG-AAGT--
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATT---GTAAGTCC
* * * * * * ** * *
20783844 TATCTCCCTAAG-CAGTAGTAGAGTTGATCGAAGAAGGCGAA-TCA
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * ****
20783888 TATTTTCCCAAGGT-AGTAG-GGAAGAAGGTTTAAGCCACT-AG-CC
1 TA-TCTCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
20783931 TTATCTTCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20783976 TGTCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20784020 TATGAT-CCTGAG-CAGCAGTGGAGTAGGTTGAA-ATT-TACAGATCT
1 TAT-CTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * * ** * *
20784064 TATCT-CTTAAAG-CTGTAGTGGAACA-GATGAAGAAGGCGAA-TCT
1 TATCTCCCT--GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * **** * *
20784107 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AGACT
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* *
20784151 TATCTCTCTGGTCAGTAGTGGATTAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20784195 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** *
20784239 TATCTCCCTGGCCAACAGTGGAATTGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20784283 TATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
**
20784317 TATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
** * * * *
20784361 TATCTCCCTGACCAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * * * * ** * *
20784405 TATCTCCCAAAG-CAGTGGTGGAGTAGATCGAAGACGGCGAA-TCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * * ****
20784449 TACCTTCCCAAGGT-AGTAG-GGAAGAAGATGTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAATAGGTTG-AAGATTGTAAGTCC
* * * * * *
20784492 TTGTCTCCTTCGTGAGTAGAGGAATAGGTTGAAGATTGTAAGTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * *
20784537 TATCTCCCAAGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20784571 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* ** * ** *
20784615 TATCTCTCTGGTCAGTAGTGTTATAGGTTGTAGATTACAAATCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * *
20784659 TATCTCCCTGAG-CAGCAATGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
** * * * ** ** * *
20784703 TATCTCCCAAAG-CAGTAGTAGAGTAGATTGAAGACGGCGATTCT
1 TATCTCCC-TGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** * * ****
20784747 TATCTTCCCATGGT-AGCAG-GGACGCAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGA-ATAGGTTGAAGATTGTAAGTCC
* * *
20784790 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCT
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
**
20784835 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
*
20784879 TATCTCCCTGGTCAACT-GTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTC-AGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** * *
20784913 TATCTCCCTGGTCACCAGTGGAATAGGTTGAAGGTTATGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
20784957 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * ** *
20785001 TATGTTCCTGAG-CAGCAGTGGCGTAGGTTGAA-ATT-TACAGATCT
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * * * ** * *
20785045 TATCT-CTTAAAG-CAGTAGTGGAACA-GATAAAGACGGCGAA-TCT
1 TATCTCCCT--GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTCC
* * * * ****
20785088 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * * *
20785131 TTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAACTCA
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
20785176 TATCTCCCAGGTCAGCAGT-GAA-A---T--AG-GTG-AA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
20785210 TATCTCCCTTGTCAGTAGTGGAATAGGATGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
20785254 TATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTATGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * *
20785298 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTAT-AGATCC
1 TATCTCCCTG-GTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCC
* * * * * * ** *
20785342 AATCTCCCTAAG-CAGTAGTGGAGTAGATCGAAGATGGCGAGTCT
1 TATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * * * ****
20785386 TATCTTTCGCTGTTTA-TAG-GGAAGCAGATAT-AAGCCACT-AG-CC
1 TATC--TCCCTGGTCAGTAGTGGAA-TAGGT-TGAAGATTGTAAGTCC
*
20785429 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCG
1 -TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20785474 TATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** *
20785518 TATCTCCCTGGTCAACAGTGGAGTAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20785562 AATCTCCTTGGTCTGCAGTGGAATAGG-TG--GA---T---T-C
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
** *
20785596 TATCTCCCTGGTTGGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCC
20785640 TATCTCCCT
1 TATCTCCCT
20785649 AAGCAGCAGT
Statistics
Matches: 16939, Mismatches: 4306, Indels: 3920
0.67 0.17 0.16
Matches are distributed among these distances:
33 4 0.00
34 1355 0.08
35 186 0.01
36 122 0.01
37 58 0.00
38 97 0.01
39 58 0.00
40 80 0.00
41 109 0.01
42 494 0.03
43 1706 0.10
44 11132 0.66
45 1411 0.08
46 91 0.01
47 34 0.00
48 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:20762781 original size:264 final size:265
Alignment explanation
Indices: 20762135--20764089 Score: 967
Period size: 264 Copynumber: 7.5 Consensus size: 265
20762125 TCACAAAGCT
* * * * *
20762135 TTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTACCTCCATGGTTAGTAGTG
1 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTG
* * * * * *
20762200 GAATATGCTGAAGATGGTGAATCCTATCTTCCT-AGTCAGCAGTGGAATATGTTGAAGATTGTGA
66 GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGATTGTGA
*
20762264 ATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTA
131 ATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGAAGTA
* *
20762329 GTAGAGCAGATCGAAGACGGCGATTCTTATATTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCAC
196 GTAGAGCAGATCGAAGACGGCGAATCTTATATTCCCAAGATAGTAGGGAAGCAGATTTAAGCCAC
20762394 TAACC
261 TAACC
* *
20762399 TTATCTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGTAGTG
1 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTG
* * * *
20762464 GAATAGGTTAAAGATTGTGAGTTCTATCTCTCTG-GTCAA-CAGTGGAATAGGTTGAAGATTGTG
66 GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGT-AAGCAGTGGAATAGGTTGAAGATTGTG
* * * *
20762527 AATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAACTTACAGATCTTATCTCCCTAAGAAGT
130 AATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGAAGT
* * *
20762592 AGTAGAGCAGATCGAAGTCGGTGAATCTTATCTTCCCAAGATAGTAGGGAAGCAGATTTAAGCCA
195 AGTAGAGCAGATCGAAGACGGCGAATCTTATATTCCCAAGATAGTAGGGAAGCAGATTTAAGCCA
*
20762657 CTAGCC
260 CTAACC
*
20762663 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG-CGAT
1 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAG-T
* * * **
20762727 GGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-AAGTAGTGGAGTAGGTTGAAAATT-AC
65 GGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGATTGTG
* ** ** * ** * * * *** * *
20762790 AGATCTTATCTTCCTAAGCAGTAGTAAAGCA-GATCAAAGACGGCGATTCTTATCTTCCC-AAG-
130 A-ATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAA-ATTACAAATCTTATC-TCCCTAAGA
** * * ** * * * ** *
20762852 -GTAGTAGGGAAGCAGATTTAAGAC-ACTAGCCTTATA-TCCC-CGTTCAGTAGTGAAATAGGTT
192 AGTAGTA--G-AGCAGATCGAAGACGGCGAATCTTATATTCCCAAGAT-AGTAGGGAAGCAGATT
* ****
20762913 GAAGATTGTAAGTCC
253 TAAGCCACTAA--CC
* * * * * *
20762928 -TATCTCACTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAGTCATATCTCCCTGGCCAGCAGTG
1 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTG
** *
20762992 GAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTG-GCCAGCAATGG-A-A---T--A-A--GTG
66 GAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGATTGTG
* ** * *** * * *
20763045 AATCCTATC-TCCTTAGTCAGCAGTGGAATAGGTT-AAAGATTGTGAATCCTATCTCCCTGAGCA
130 AATCCTATCGCCCGGAG-CAGCAGTGGAGTAGGTTGAAA-ATTACAAATCTTATCTCCCTAAGAA
* * * * * *** * **
20763108 GTAGTGGAGTAGGTTGAAAATTAC-AGATCTTAT-CTCCCTAAGA-AGTAGTGG-AGCAGATCGA
193 GTAGTAGAGCAGATCGAAGACGGCGA-ATCTTATATTCCC-AAGATAGTAG-GGAAGCAGATTTA
* * *
20763169 AGACAGCGAATC
255 AGCCA-CTAACC
* * * * **** *
20763181 TTATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AG-CCTTATCTCCCTGGTCGGT
1 TTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCCTGGTCAGT
* * *
20763242 AGTAGAATAGGTTGAAGAGTGT-AAGTCCTATCTCCCT-AGTCAGCAGTGG-A-A---T--AG--
62 AGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGAT
* * * * *** * *
20763296 -GTGAATCCTATCTCCCTGG-TCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGA
126 TGTGAATCCTATCGCCC-GGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAA
* * * * * * *** * * * *
20763359 GCAGTAGTGGAGAAGGTTGAAAATTACAAATCTTAT-CTCCCTAAG-CAGTA-GCAGAGCAGATT
190 GAAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATATTCCC-AAGATAGTAGGGA-AGCAGATT
* ** * **
20763421 GAAGACGGCGATTC
253 TAAG-CCACTAACC
*** * * **** *
20763435 TTATCTTCACAAAGT-AGTAG-GGAAGTAGATTTAAGCCACT-AG-CCTTATCTCACTGGTCAGT
1 TTATC-TC-CCTGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCCTGGTCAGT
* * *
20763496 AGTGGAATAGGTTGAAGATTGT-AAGTCTTATCTCCATG-GTCAGCAGTGGAATAGGTTGAAGAT
62 AGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGAT
* * * ** * ** * * * *** * * *
20763559 TGCGAGTCCTATCTCCCTCACCAATAGTGAAATAGGTTTAAAATTGTGAATCCTAGCTCCCTGAG
126 TGTGAATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAG
* * * * ** * *** * * *
20763624 CAGCAGT-GTAGTAGGTTAAAAATTACAGAA-GTTAT-CTCCCTAAGCAATAGTA--G-AGTAGA
191 AAGTAGTAG-AGCAGATCGAAGACGGC-GAATCTTATATTCCC-AAG--ATAGTAGGGAAGCAGA
** * ** *
20763683 TCGAAGACGGTGAATC
251 TTTAAGCCACT-AACC
* * * * * * ** * * *
20763699 ATATCATCCCAAGGT-AGTTG-GGAAGGAGATTTAAG-CCGCT-AGGCTTATCTTCCTGGTCAGT
1 TTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTG-TAAGTCCTATCTCCCTGGTCAGT
* * * * *
20763760 AGCGGAATAGGTTGACGATTGT-AAGTCCTATCTCCCT-AGTCAGCAGTGGAATAGGCTGAAAAT
62 AGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGAT
** * * * * * *
20763823 TGTGAATCCTATATCCCTGAGCAGCGGTGGAGTAGGTTGCAAATTATAGATCTTATCCCCCTAAG
126 TGTGAATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAG
* * * * * *
20763888 CAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAA
191 AAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATATTCCCAAGATAGTAGGGAAGCAGATTTAA
*
20763953 GCCACTAGCC
256 GCCACTAACC
* * *
20763963 TTATCTTCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTG
1 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTG
* * * *
20764028 GGATAGGTTGAAGATTGTGAGTCTTATCTCCCT-TGTCAA-CAGTGGAATAGGTTGAAGATTGT
66 GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGT-AAGCAGTGGAATAGGTTGAAGATTGT
20764090 AAGTACTATC
Statistics
Matches: 1346, Mismatches: 265, Indels: 160
0.76 0.15 0.09
Matches are distributed among these distances:
252 1 0.00
253 22 0.02
254 339 0.25
255 29 0.02
256 11 0.01
257 1 0.00
259 2 0.00
261 2 0.00
262 17 0.01
263 54 0.04
264 822 0.61
265 42 0.03
267 4 0.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (265 bp):
TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGTAGTG
GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGTAAGCAGTGGAATAGGTTGAAGATTGTGA
ATCCTATCGCCCGGAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGAAGTA
GTAGAGCAGATCGAAGACGGCGAATCTTATATTCCCAAGATAGTAGGGAAGCAGATTTAAGCCAC
TAACC
Found at i:20763120 original size:342 final size:332
Alignment explanation
Indices: 20762705--20763357 Score: 970
Period size: 342 Copynumber: 1.9 Consensus size: 332
20762695 AGATTGTAAG
* *
20762705 TCCTATCTCCCTGGTCAGCGATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGAAGTAG
1 TCCTATCTCCCTAGTCAGCGATGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGAAGTAG
* * *
20762770 TGGAGTAGGTTGAAAATTACAGATCTTATCTTCCTAAGCAGTAGTAAAGCAGATCAAAGACGGCG
66 TGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTAAAGCAGATCAAAGACAGCG
* *
20762835 ATTCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTAGCCTTATATCCCCGTTCAGT
131 AATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTAGCCTTATATCCCCGGTCAGT
* * *
20762900 AGT-GAAATAGGTTGAAGATTGTAAGTCCTATCTCACTGGTCAGTAGTGGAATAGGTTAAAGATT
196 AGTAG-AATAGGTTGAAGAGTGTAAGTCCTATCTCACTAGTCAGCAGTGGAATAGG-T---GA--
20762964 GTGAGTCATATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGC
254 ---A-TCATATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGC
20763028 CAGCAATGGAATAAGTGAA
314 CAGCAATGGAATAAGTGAA
* *
20763047 TCCTATCTCCTTAGTCAGC-AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGCAGTA
1 TCCTATCTCCCTAGTCAGCGA-TGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGAAGTA
** *
20763111 GTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGACAGC
65 GTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTAAAGCAGATCAAAGACAGC
* * * *
20763176 GAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCGG
130 GAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTAGCCTTATATCCCCGGTCAG
* *
20763241 TAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAATCCTA
195 TAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCACTAGTCAGCAGTGGAATAGGTGAATCATA
*
20763306 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
260 TCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
20763358 AGCAGTAGTG
Statistics
Matches: 286, Mismatches: 22, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
332 52 0.18
333 3 0.01
338 2 0.01
341 2 0.01
342 226 0.79
343 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (332 bp):
TCCTATCTCCCTAGTCAGCGATGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGAAGTAG
TGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTAAAGCAGATCAAAGACAGCG
AATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTAGCCTTATATCCCCGGTCAGT
AGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCACTAGTCAGCAGTGGAATAGGTGAATCATAT
CTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGCCAGCAATGGAAT
AAGTGAA
Found at i:20763142 original size:122 final size:122
Alignment explanation
Indices: 20762925--20763379 Score: 352
Period size: 122 Copynumber: 3.6 Consensus size: 122
20762915 AGATTGTAAG
* * * * * *
20762925 TCCTATCTCACTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAGTCATATCTCCCTGGCCAGCAG
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGCCAGTAG
*
20762990 TGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGCCAGCAATGGAATAAGTGAA
66 TGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTGGCCAGCAATGGAATAAGTGAA
*
20763047 TCCTATCTCCTTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAG-CAGTA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTG-GCCAGTA
* * ** * *
20763111 GTGGAGTAGGTTGAA-AAT-TACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGACA
65 GTGGAATAGGTTGAAGAATGTA-AG-TCCTATCTCCCT-----G--G-CCAGCA-ATGGAATA-A
*
20763174 GCGAA
118 GTGAA
* * * * * * **** * * *
20763179 TCTTATCTTCCCAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT--AGCCTTATCTCCCTGGTCG
1 TCCTATC-TCCCTA-GTCAGCAGTGGAA-TAGGTTAAAGATTGTGAATCC-TATCTCCCTGGCCA
* * * * * *
20763240 GTAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
62 GTAGTGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTGGCCAGCAATGGAATAAGTGAA
* *
20763301 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGTA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTG-GCCAGTA
20763365 GTGGAGA-AGGTTGAA
65 GTGGA-ATAGGTTGAA
20763380 AATTACAAAT
Statistics
Matches: 253, Mismatches: 54, Indels: 52
0.70 0.15 0.14
Matches are distributed among these distances:
120 4 0.02
121 20 0.08
122 120 0.47
123 11 0.04
124 4 0.02
125 1 0.00
127 1 0.00
129 1 0.00
130 4 0.02
131 10 0.04
132 53 0.21
133 20 0.08
134 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (122 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGCCAGTAG
TGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCTGGCCAGCAATGGAATAAGTGAA
Found at i:20763310 original size:34 final size:34
Alignment explanation
Indices: 20763267--20763331 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
20763257 AGAGTGTAAG
20763267 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
*
20763301 TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGT
20763332 TGAAGATTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
Found at i:20763346 original size:254 final size:255
Alignment explanation
Indices: 20762972--20763819 Score: 1112
Period size: 254 Copynumber: 3.3 Consensus size: 255
20762962 TTGTGAGTCA
* * * * *
20762972 TATCTCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGCCAGCAATGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
* *
20763037 AATAAG-TGAATCCTATCTCCTTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCC
66 AATAGGCTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCC
*
20763101 CTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGAT
131 CTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGAT
*
20763166 CGAAGACAGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
196 CGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
* * *
20763226 TATCTCCCTGGTCGGTAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
* *
20763291 AATAGG-TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
66 AATAGGCTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCC
* * * *
20763355 CTGAGCAGTAGTGGAGAAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGCAGAGCAGAT
131 CTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGAT
* * * * *
20763420 TGAAGACGGCGATTCTTATCTTCACAAAGTAGTAGGGAAGTAGATTTAAGCCACTAGCCT
196 CGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
* * * *
20763480 TATCTCACTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCATGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
* * ** *
20763545 AATAGGTTGAAGATTGCGAGTCCTATCTCCCTCA-CCAATAGTGAAATAGGTTTAAA-ATTGTGA
66 AATAGGCT---GA-----A-TCCTATCTCCCT-AGTCAGCAGTGGAATAGG-TTAAAGATTGTGA
* * * * **
20763608 ATCCTAGCTCCCTGAGCAGCAGTGTAGTAGGTTAAAAATTACAGAAGTTATCTCCCTAAGCAA-T
120 ATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAG-AAGT
* * * * * * *
20763672 AGTAGAGTAGATCGAAGACGGTGAATCATATCATCCCAAGGTAGTTGGGAAGGAGATTTAAGCCG
184 AGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCA
*
20763737 CTAGGCT
249 CTAGCCT
* * *
20763744 TATCTTCCTGGTCAGTAGCGGAATAGGTTGACGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
20763809 AATAGGCTGAA
66 AATAGGCTGAA
20763820 AATTGTGAAT
Statistics
Matches: 515, Mismatches: 66, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
254 295 0.57
255 1 0.00
256 1 0.00
258 2 0.00
261 2 0.00
263 1 0.00
264 208 0.40
265 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (255 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
AATAGGCTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCC
CTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGAT
CGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
Found at i:20763355 original size:78 final size:78
Alignment explanation
Indices: 20763226--20763369 Score: 211
Period size: 78 Copynumber: 1.8 Consensus size: 78
20763216 CCACTAGCCT
* *
20763226 TATCTCCCTGGTCGGTAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCT-AGTCAGCAGTG
1 TATCTCCCTGGTCAGCAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTGAG-CAGCAGTG
20763290 GAATAGGTGAATCC
65 GAATAGGTGAATCC
* * *
20763304 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAGCAGTAGTG
1 TATCTCCCTGGTCAGCAGTAGAATAGGTTGAAGAGTGT-AAGTCCTATCTCCCTGAGCAGCAGTG
20763368 GA
65 GA
20763370 GAAGGTTGAA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
78 55 0.93
79 4 0.07
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (78 bp):
TATCTCCCTGGTCAGCAGTAGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTGAGCAGCAGTGG
AATAGGTGAATCC
Found at i:20763398 original size:342 final size:343
Alignment explanation
Indices: 20762664--20763401 Score: 959
Period size: 342 Copynumber: 2.1 Consensus size: 343
20762654 CCACTAGCCT
* * * *
20762664 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCGATGG
1 TATCTCCCTGGCCAGTAGTGGAATAGGTTGAAAATT-CAA-T-CTATCTCCCTAGTCAGCGATGG
*
20762729 AATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGAAGTAGTGGAGTAGGTTGAAAATTACAGAT
63 AATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGAAGTAGTGGAGTAGGTTGAAAATTACAGAT
* * * *
20762794 CTTATCTTCCTAAGCAGTAGTAAAGCAGATCAAAGACGGCGATTCTTATCTTCCCAAGGTAGTAG
128 CTTATCTCCCTAAGAAGTAGTAAAGCAGATCAAAGACAGCGAATCTTATCTTCCCAAGGTAGTAG
* *
20762859 GGAAGCAGATTTAAGACACTAGCCTTATATCCCCGTTCAGTAGTGAAATAGGTTGAAGATTGTAA
193 GGAAGCAGATTTAAGACACTAGCCTTATATCCCCGGTCAGTAGTGAAATAGGTTGAAGAGTGTAA
* *
20762924 GTCCTATCTCACTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAGTCATATCTCCCTGGCCAGCA
258 GTCCTATCTCACTAGTCAGCAGTGGAATAGGTT--AGA---T-AGTCATATCTCCCTGGCCAGCA
20762989 GTGGAATAGGTTGAAGATTGTAAGTCC
317 GTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
20763016 TATCTCCCTGGCCAGCAATGGAATAAG-TG--AA-TC---CTATCTCCTTAGTCAGC-AGTGGAA
1 TATCTCCCTGGCCAGTAGTGGAATAGGTTGAAAATTCAATCTATCTCCCTAGTCAGCGA-TGGAA
*
20763073 TAGGTTAAAGATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATCT
65 TAGGTTAAAGATTGTGAATCCTATCTCCCTGAGAAGTAGTGGAGTAGGTTGAAAATTACAGATCT
** *
20763138 TATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGACAGCGAATCTTATCTTCCCAAGGTAGTAGGG
130 TATCTCCCTAAGAAGTAGTAAAGCAGATCAAAGACAGCGAATCTTATCTTCCCAAGGTAGTAGGG
* * * *
20763203 AAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCGGTAGT-AGAATAGGTTGAAGAGTGTAAG
195 AAGCAGATTTAAGACACTAGCCTTATATCCCCGGTCAGTAGTGA-AATAGGTTGAAGAGTGTAAG
* * *
20763267 TCCTATCTCCCTAGTCAGCAGTGGAATAGG-T-GA-A-TCCTATCTCCCTGGTCAGCAGTGGAAT
259 TCCTATCTCACTAGTCAGCAGTGGAATAGGTTAGATAGTCATATCTCCCTGGCCAGCAGTGGAAT
20763328 AGGTTGAAGATTGTGAA-TCC
324 AGGTTGAAGATTGT-AAGTCC
20763348 TATCTCCCTGAG-CAGTAGTGGAGA-AGGTTGAAAATTACAAATCTTATCTCCCTA
1 TATCTCCCTG-GCCAGTAGTGGA-ATAGGTTGAAAATT-C-AATC-TATCTCCCTA
20763402 AGCAGTAGCA
Statistics
Matches: 339, Mismatches: 32, Indels: 40
0.82 0.08 0.10
Matches are distributed among these distances:
332 62 0.18
333 7 0.02
335 2 0.01
336 1 0.00
337 1 0.00
338 2 0.01
341 4 0.01
342 233 0.69
348 1 0.00
349 1 0.00
351 2 0.01
352 23 0.07
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (343 bp):
TATCTCCCTGGCCAGTAGTGGAATAGGTTGAAAATTCAATCTATCTCCCTAGTCAGCGATGGAAT
AGGTTAAAGATTGTGAATCCTATCTCCCTGAGAAGTAGTGGAGTAGGTTGAAAATTACAGATCTT
ATCTCCCTAAGAAGTAGTAAAGCAGATCAAAGACAGCGAATCTTATCTTCCCAAGGTAGTAGGGA
AGCAGATTTAAGACACTAGCCTTATATCCCCGGTCAGTAGTGAAATAGGTTGAAGAGTGTAAGTC
CTATCTCACTAGTCAGCAGTGGAATAGGTTAGATAGTCATATCTCCCTGGCCAGCAGTGGAATAG
GTTGAAGATTGTAAGTCC
Found at i:20764181 original size:78 final size:78
Alignment explanation
Indices: 20764052--20764201 Score: 239
Period size: 78 Copynumber: 1.9 Consensus size: 78
20764042 TTGTGAGTCT
*
20764052 TATCTCCCTTGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
20764117 AATAGGTGAATCA
66 AATAGGTGAATCA
* * * *
20764130 TATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAATG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAGTACTATCTCCCTGGTCAGCAATG
20764194 GAATAGGT
65 GAATAGGT
20764202 TGAAGACTAC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 64 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (78 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
AATAGGTGAATCA
Found at i:20764388 original size:298 final size:297
Alignment explanation
Indices: 20764050--20764719 Score: 973
Period size: 298 Copynumber: 2.2 Consensus size: 297
20764040 GATTGTGAGT
* ** *
20764050 CTTATCTCCCTTGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAAT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT-CTATCTCCCTGGTCAGCAGT
* * *
20764115 GGAATAGGTGAATCATATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTC
65 GGAATAGGTGAATCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTC
* * *
20764180 CCTGGTCAGCAATGGAATAGGTTGAAGACTACGAATCCTATGTCCTTGAGCAGCAGTGGAGTAGG
130 CCTGGTCAGCAATGGAATAGATTGAAGACTACGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
* * *
20764245 TTAAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTA-C
195 ATAAAAATTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATC
*
20764309 CTTCCTAAAGTAGTAGGGAAGAAGATTTAAGCCACTAGC
260 CTTCC-AAAGTAGTAGGGAAGAAGATATAAGCCACTAGC
20764348 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTC-TATCTCCCTGGTCAGCAGT
* * * * * *
20764413 GAAATACGTGAATCCTATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTC
65 GGAATAGGTGAATCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTC
* * * **
20764478 CCTGGTCAGCAGTGTAATAGATTGAAGATTTTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
130 CCTGGTCAGCAATGGAATAGATTGAAGACTACGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
* * * *
20764543 ATGAAAATTACAGGTCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATC
195 ATAAAAATTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATC
* * *
20764608 TTTCCAAGGTAGTAGGGAAGCAGATATAAGCCACTAGC
260 CTTCCAAAGTAGTAGGGAAGAAGATATAAGCCACTAGC
* * * *
20764646 CTTATCTCTCTGCTAAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT-CTATCTCCCTGGTCAGCAGT
20764711 GGAATAGGT
65 GGAATAGGT
20764720 TGATGATTAT
Statistics
Matches: 331, Mismatches: 38, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
297 1 0.00
298 324 0.98
299 6 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (297 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCTATCTCCCTGGTCAGCAGTG
GAATAGGTGAATCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCC
CTGGTCAGCAATGGAATAGATTGAAGACTACGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGA
TAAAAATTACAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCC
TTCCAAAGTAGTAGGGAAGAAGATATAAGCCACTAGC
Found at i:20764479 original size:78 final size:78
Alignment explanation
Indices: 20764350--20764496 Score: 233
Period size: 78 Copynumber: 1.9 Consensus size: 78
20764340 CCACTAGCCT
*
20764350 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGA
20764415 AATACGTGAATCC
66 AATACGTGAATCC
* * *
20764428 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTAT-AAGTCATATCTCCCTGGTCAGCAGTG
*
20764492 TAATA
65 AAATA
20764497 GATTGAAGAT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 61 0.97
79 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGA
AATACGTGAATCC
Found at i:20764813 original size:298 final size:295
Alignment explanation
Indices: 20764068--20764845 Score: 900
Period size: 298 Copynumber: 2.6 Consensus size: 295
20764058 CCTTGTCAAC
* *
20764068 AGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAG-G-TGA--ATC
1 AGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGTGATGATGATC
* * * *
20764129 ATATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATG
66 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG
* * * *
20764194 GAATAGGTTGAAGACTACGAATCCTATGTCCTTGAGCAGCAGTGGAGTAGGTTAAAAATTACAGA
131 GAATA---TG-AG--T-TGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
* *
20764259 TCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTACCTTCCTAAAGTAGTA
189 TCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTACCTTCCTAAAGTAGTA
* * *
20764324 GGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGT
254 GGGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGCTAAGT
* * *
20764366 AGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATA-CG-TGA--ATC
1 AGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGTGATGATGATC
* * * *
20764427 CTATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTG
66 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG
* * *
20764492 TAATAGATTGAAGATTTTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGATGAAAATTACAGG
131 GAAT--A-TG-AG---TTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
* * * *
20764557 TCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCC-AAGGTAGT
189 TCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTA-CCTTCCTAAAGTAGT
* *
20764621 AGGGAAGCAGATATAAGCCACTAGCCTTATCTCTCTGCTAAGT
253 AGGGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGCTAAGT
*
20764664 AGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGATGATTA
1 AGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATA-G-TGATG---A
* * ** *
20764729 TGAGTCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGT-AAGTCAAATCTCCTTGGTC
61 TGA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTC
* *
20764793 AGCAGTGGAATA-G-G-TGAATCCTATCTCCCTG-GTTAGCAGTGGAATAGGTTGAA
124 AGCAGTGGAATATGAGTTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA
20764846 GATTGTGAAT
Statistics
Matches: 414, Mismatches: 49, Indels: 34
0.83 0.10 0.07
Matches are distributed among these distances:
297 1 0.00
298 338 0.82
299 6 0.01
300 1 0.00
301 1 0.00
302 3 0.01
304 1 0.00
305 1 0.00
306 1 0.00
307 3 0.01
308 58 0.14
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (295 bp):
AGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGTGATGATGATC
CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG
GAATATGAGTTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCCTATC
TCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTACCTTCCTAAAGTAGTAGGGAAGA
AGATATAAGCCACTAGCCTTATCTCCCTGCTAAGT
Found at i:20764813 original size:386 final size:386
Alignment explanation
Indices: 20764350--20765105 Score: 1122
Period size: 386 Copynumber: 2.0 Consensus size: 386
20764340 CCACTAGCCT
** *
20764350 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAGTGA
* * *
20764415 AATACGTGAATCCTATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
66 AATACGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
* * *
20764480 TGGTCAGCAGT-GTAATAGATTGAAGATTTTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGA
131 TGGTCAGCAATAG-AATAGATTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGA
* * * * *
20764544 TGAAAATTACAGGTCCTATCTCCCT-AAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATC
195 TGAAAATTACAGATCCTATCT-CCTAAAACAGTAGTAGAGCAGATAGAAAACGGCGAATCTTATC
* * * *
20764608 TTTCCAAGGTAGTAGGGAAGCAGATATAAGCCACTAGCCTTATCTCTCTGCTAAGTAGTGGAATA
259 TTCCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGCTAAGGAGTGGAATA
* *
20764673 GGTTGAAGATTGTAAGTCCTATCTCCCTA-GTCAGCAGTGGAATAGGTTGATGATTATGAGTCC
324 GGTTGAAGATTGTAAGTCATATCTCCC-AGGTCAGCAGTGAAATAGGTTGATGATTATGAGTCC
* * *
20764736 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAGTGA
* * * **
20764801 AATAGGTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATTTTATCTCCC
66 AATACGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
* * *
20764866 TGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTTGGTT
131 TGGTCAGCAATAGAATAGATTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGAT
* * *
20764931 GAAAATTATAGATCCTATCTCCTAAAACAGTAGTGGAGTAGATAGAAAACGGCGAATCTTATCTT
196 GAAAATTACAGATCCTATCTCCTAAAACAGTAGTAGAGCAGATAGAAAACGGCGAATCTTATCTT
* * * *
20764996 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTCGCCTTATCTCCCTGGTCAGGAGTGGAATAGG
261 CCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGCTAAGGAGTGGAATAGG
20765061 TTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGAAATAGGT
326 TTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGAAATAGGT
20765106 GAATCCTATC
Statistics
Matches: 329, Mismatches: 38, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
385 4 0.01
386 324 0.98
387 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (386 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAGTGA
AATACGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
TGGTCAGCAATAGAATAGATTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGAT
GAAAATTACAGATCCTATCTCCTAAAACAGTAGTAGAGCAGATAGAAAACGGCGAATCTTATCTT
CCCAAGGTAGTAGGGAAGAAGATATAAGCCACTAGCCTTATCTCCCTGCTAAGGAGTGGAATAGG
TTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGAAATAGGTTGATGATTATGAGTCC
Found at i:20764863 original size:78 final size:78
Alignment explanation
Indices: 20764733--20764885 Score: 227
Period size: 78 Copynumber: 2.0 Consensus size: 78
20764723 TGATTATGAG
* *
20764733 TCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAG
1 TCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAA
*
20764798 TGGAATAGGTGAA
66 TAGAATAGGTGAA
* ***
20764811 TCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TTTTATCTCCCTGGTCAGCA
1 TCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGT-AAGTCAAATCTCCCTGGTCAGCA
20764875 ATAGAATAGGT
65 ATAGAATAGGT
20764886 TGAAGATTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 65 0.97
79 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (78 bp):
TCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAA
TAGAATAGGTGAA
Found at i:20764907 original size:122 final size:122
Alignment explanation
Indices: 20764689--20764923 Score: 310
Period size: 122 Copynumber: 1.9 Consensus size: 122
20764679 AGATTGTAAG
* * * *
20764689 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGATGATTATGAGTCCTATCTCCCTGGTTAACAG
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAACAA
* * **
20764754 TGGAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGGAATAGGTGAA
66 TAGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGACCAGCAGTGGAATAGGTGAA
* * * ** *
20764811 TCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATTTTATCTCCCTGGTCAGCAA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAACAA
**
20764876 TAGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGACCAGCAGTGGA
66 TAGAATAGGTTGAAGATTGT-AAGTCAAATCTCCCTGACCAGCAGTGGA
20764924 GTTGGTTGAA
Statistics
Matches: 96, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
122 94 0.98
123 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (122 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAACAA
TAGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGACCAGCAGTGGAATAGGTGAA
Found at i:20765061 original size:684 final size:680
Alignment explanation
Indices: 20763744--20767925 Score: 3057
Period size: 684 Copynumber: 6.1 Consensus size: 680
20763734 CCGCTAGGCT
* * * * * *
20763744 TATCTTCCTGGTCAGTAGCGGAATAGGTTGACGATTGT-AAGTCCTATCTCCCTAGTCAGCAGTG
1 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGTG
* * * * *
20763808 GAATAGGCTGAAAATTGTGAATCCTATATCCCTGAGCAGCGGTGGAGTAGGTTGCAAATTATAGA
65 GAATAGGCTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
*
20763873 TCTTATCCCCCTAAGCAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTA
130 TCTTATCTCCCTAAGCAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTA
* * *
20763938 GGGAAGTAGATTTAAGCCACTAGCCTTATCTTCCTGGTCAGTAGGGGAATAGGTTGAAGATTGTA
195 GGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTA
* * * *
20764003 AGTCCTATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCTTATCTCCCTTGTCAAC
260 AGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAAC
* * *
20764068 AGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTGAATCATAT
325 AGTGGAATAGGTTGAAGATTGTAAGT-CAATCT-CCTGGTCAGCAGTGGAATAGGTGAATCCTAT
* * * *
20764133 CTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAAT
388 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCTTATCTCCCTGGTCAGCAATAGAAT
* * * * *
20764198 AGGTTGAAGACTACGAATCCTATGTCCTTGAGCAGCAGTGGAGTAGGTTAAAAATTACAGATCTT
453 AGGTTGAAGACTGCGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT-AAAATTATAGATCCT
* * * * * *
20764263 ATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTACCTTCCTAAAGTAGTAGGGA
517 ATCTCCTAAAACAGTAGTGGAGTAGATAGAAGACGGCGAATCTTATCTTCC-CAAGTAGTAGGGA
*
20764328 AGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTC
581 AGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTC
*
20764393 ATATCTCCCTGGTCAGCAGTGAAATACGTGAATCC
646 ATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCC
* *
20764428 TATCTCTCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGT
1 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGG
** * * *
20764493 AATAGATTGAAGATTTTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGATGAAAATTACAGGT
66 AATAGGCTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * *
20764558 CCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAG
131 CTTATCTCCCTAAGCAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAG
* * * *
20764623 GGAAGCAGATATAAGCCACTAGCCTTATCTCTCTGCTAAGTAGTGGAATAGGTTGAAGATTGTAA
196 GGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAA
* * *
20764688 GTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGATGATTATGAGTCCTATCTCCCTGGTTAACA
261 GTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACA
20764753 GTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGGAATAGGTGAATCCTATC
326 GTGGAATAGGTTGAAGATTGTAAGTC-AATCTCC-TGGTCAGCAGTGGAATAGGTGAATCCTATC
* *
20764818 TCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATTTTATCTCCCTGGTCAGCAATAGAATA
389 TCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCTTATCTCCCTGGTCAGCAATAGAATA
* * * *
20764883 GGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTTGGTTGAAAATTATAGATCCTA
454 GGTTGAAGACTGCGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT-AAAATTATAGATCCTA
*
20764948 TCTCCTAAAACAGTAGTGGAGTAGATAGAAAACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAA
518 TCTCCTAAAACAGTAGTGGAGTAGATAGAAGACGGCGAATCTTATCTTCCCAA-GTAGTAGGGAA
* *
20765013 GAAGATTTAAGCCACTCGCCTTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCA
582 GAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCA
*
20765078 TATCTCCCAGGTCAGCAGTGAAATAGGTGAATCC
647 TATCTCCCTGGTCAGCAGTGAAATAGGTGAATCC
* * * * * *
20765112 TATCTCCCTTGTCAGAAGTGGAATAGGTTGAATATTGTGAATCCTATCTCTCTGGTCAGTAGTGT
1 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGG
* * *
20765177 AATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
66 AATAGGCTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * ** * ** *
20765242 CTTAACTCTCTAAATAGTAGTAGAGCAGATCGAAGACGGCGATTCTTAAATTCCCAAGCTAGTAG
131 CTTATCTCCCTAAGCAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAG
* * * * *
20765307 GGAAGCAGATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAA
196 GGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAA
* * *
20765372 GTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCTTATCTCCCTGGTCAACA
261 GTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACA
*
20765437 GTGGAATAGG-TG-A-ATCT-T-A-TC--TC-CCTGGTCAGTAGTGGAATAGGTTGATGATTGTA
326 GTGGAATAGGTTGAAGAT-TGTAAGTCAATCTCCTGGTCAGCAGTGGAATA----G--G--TG-A
* **
20765493 GATCCTATCTCCCTGAG-CAGCAGTGGAGA-AGGTTGAAAATT-ACAGATCTTATCTCCCTAGG-
381 -ATCCTATCTCCCTG-GTCAGCAGTGGA-ATAGGTTGAAGATTGTGA-ATCTTATCTCCCT-GGT
** * ** * * * * * * * * * * * *
20765554 CATTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCTAAGGTAGTAG-GGAAGAAGATTTA
441 CAGCAATAGAATAGGTTGAAGACTGCGAATCCTATCTCCCTGA-GCAGCAGTGG-AGTAGGTTAA
*** *** * * * **** *
20765618 AGCCACTAG--CCTTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGA-TTTTAAGTCCTATC-
504 AATTA-TAGATCC-TATCT-CCTAAAACAGTAGTGGAGTAGATAGAAGACGGCGAA-TCTTATCT
* * * * * *** * *
20765678 TCCCTAGTCAGCAGTGGAA-TAGGTTCAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGGAAT
565 TCCCAAGT-AGTAG-GGAAGAAGATTTAAGCCACT-AGCCTTATCTCCCTGGTCAGCAGTGGAAT
* * *
20765742 AGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGATTAGGTGAATCC
627 AGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCC
* * * * * *
20765796 GATCTCCCTGGTGAGCAGTAGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAATGG
1 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGG
* *
20765861 AATAGGCTGAAGATTGTGAATCTTATGTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
66 AATAGGCTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * *
20765926 CTTATCT-CCTAAAGCAGTAGTGGAACAGAT-GAAGACGACGAATCTTATCTTCCCAAGGTAGTA
131 CTTATCTCCCT-AAGCAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTA
* * * * *
20765989 GGGAAGAAAATTTCAGCCAGTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTA
195 GGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTA
* *
20766054 AGTCCTATCTCCCTAGTCAGCA-TGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAGC
260 AGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAAC
* ** *
20766118 AGTGGAAT-GGGTG-A-ATCCT-A-TC--TC-CCTGGTCAGCAGTGGAATCGGTTGAAGATTTTG
325 AGTGGAATAGGTTGAAGATTGTAAGTCAATCTCCTGGTCAGCAGTGGAA-----T--AG---GTG
* * * * *
20766175 AATCCTATCTCCCTCGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTGCCTGAG-CAG
380 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCTTATCTCCCTG-GTCAG
* * * * * * ** * ** * * * **
20766239 CAGTGGAATAGGTTGAAAATTAC-AGATCTTATCTCCCAAAGCAGTAGTGGAACAGATGAAGACG
444 CAATAGAATAGGTTGAAGACTGCGA-ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAATT
* * *** * *** ** * ** *
20766303 AT-GAATCTTATCTTCCCAAGGTAGTAG-GGAAGAAGATTTCAG-CCACTAGCCTTATC-TCCCT
508 ATAG-ATCCTATC-TCCTAAAACAGTAGTGG-AGTAGATAGAAGACGGCGAATCTTATCTTCCCA
* * * * **** * *
20766364 GGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCCTAGTCAGTAGTGGAATAGGT
570 AGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CCTTATCTCCCTGGTCAGCAGTGGAATAGGT
* * * * * * * * *
20766427 TGAGGATTCTGAGTCCTATATCCCTGGTCAACACTGGAATAGGTTGAAGATTC
631 TGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGG-TG-A-ATCC
** ** * * ** * *
20766480 TAAGTCCTCTCTCCCCG--GT-CAGCA-G-TGAA-A-TAGGTGAAACCTATCTCTCTGGTCAGCA
1 TATCTCC-CT-TGTCAGTAGTGGAATAGGTTGAAGATTA--TGAATCCTATCTCCCTGGTCAGCA
* * * *
20766538 GTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG-GTCAGAAGTGGAATAGGTTGAAGATT-
62 GTGGAATAGGCTGAAGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTA
** * * ** * * * *
20766601 GTGAATCCTATCTCCCT-----G--GT-CAACAG--CGGATTA-GGTGAATCCTATC-TCCC-TG
126 CAG-ATCTTATCTCCCTAAGCAGTAGTAGAACAGATC-GAAGACGGCGATTCTTATCTTCCCAAG
** ** * *** ** *
20766653 GTCAACAGTGGAATAAG-TTAAAGATTCT-GAATACTATCTCCCTGAG-CAGCAGTGGAGA-AGG
189 GT-AGTAG-GGAAGCAGATTTAAGCCACTAGCCT--TATCTCCCTG-GTCAGTAGTGGA-ATAGG
* * * * * * ** * * ** * * *
20766714 TTGAAAATTACTGA-TCTTATCTCCCTAAG-CAGTAGTAGAGCAGATCGAAGACGGCGATTCTTA
248 TTGAAGATT-GTAAGTCCTATCTCCCT-AGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTA
* ** * * * **** * * *
20766777 TCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AGCCTTATCTCCCTGGTCAGTAGTG
311 TC-TCCC-TGGTCAACAGTGGAA-TAGGTTGAAGATTGTAAGTC-AATCT-CCTGGTCAGCAGTG
* * * *
20766839 GAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGAAATA-G--G-AGA--AT--A
371 GAATAGG-T---G-----AA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA
* * * * * ** *
20766896 -CTT-TGTCCCTTGTCAGTAATGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTG-GTCAGCA
426 TCTTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGACTGCGAATCCTATCTCCCTGAG-CAGCA
* * * * *** * * * * * * **
20766958 GTGTAATAGGTTGAAGATTGT-GAATCCTATCTCCCT-CGTCAATAGTGAAATAGGTTGAAAATT
490 GTGGAGTAGGTT-AAAATTATAG-ATCCTATCT-CCTAAAACAGTAGTGGAGTAGATAGAAGACG
* * * * * * * * * *** **
20767021 GTGAATCCTAGC-TCCCTGAGCAGCAGTGG-AGTAGGTTAAAAATTAC-AGAAGTTATCTCCCTA
552 GCGAATCTTATCTTCCC-AAGTAGTAG-GGAAGAAGATT-TAAGCCACTAG-CCTTATCTCCCT-
* * * * * * * * * ** * * *
20767083 AG-CAGTAGTAGAGTAGATCGAAG-TGGCGAATTTTTAT-TCCCAAGGT-AGTAGGGAAGCAGAT
612 GGTCAGCAGTGGAATAGGTTGAAGATTG-TAAGTCATATCTCCC-TGGTCAGCAGTG-A--A-A-
** * *
20767144 TTAAGGCACAAGCGT
670 -T-AGG-TGAATC-C
* * * * * *
20767159 TATCTTCCTGGTTAGTAGTGGAATAGGTTGACGATTGT-AAGTCCTATCTCCCTAGTCAGCAGTG
1 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGTG
* * * * * *
20767223 GAATAGGCTGAAAATTTTGAATCCAATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAATTATAGA
65 GAATAGGCTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
* *
20767288 TATTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTA
130 TCTTATCTCCCTAAGCAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTA
* *
20767353 GGGAAGTAGATTTAAGCTACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTA
195 GGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTA
* * * * * *
20767418 AGTCCTATCTCCCTGGTCAGCAGCGGGATAGGTTGAAGATTGAGAGACTTATCTCCCTGGTCAAC
260 AGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAAC
* * * * * *
20767483 AATAGAATAGGTTTAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTGAATCATAT
325 AGTGGAATAGGTTGAAGATTGTAAGT-CAATCT-CCTGGTCAGCAGTGGAATAGGTGAATCCTAT
* * * * *
20767548 CTCCCTGGTCAGCAGTGGACTTGGTTAAAGATTGGGAATCTTATCTCCCTGGTCAGCAATGGAAT
388 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCTTATCTCCCTGGTCAGCAATAGAAT
* * * * *
20767613 AGGTTGAAGACTGCGAATCCAATGTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTT
453 AGGTTGAAGACTGCGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT-AAAATTATAGATCCT
* * * * * *
20767678 ATCTTCC-AAAGCAGTAGTGGAGCAAATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTAGGG
517 ATC-TCCTAAAACAGTAGTGGAGTAGATAGAAGACGGCGAATCTTATCTTCCCAA-GTAGTAGGG
* * *
20767742 AAGAAAATTTCAGCCAGTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
580 AAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
20767807 CCTATCTCCCTAGTCAGCA-TGGAATAGGTTTAAGCCACTAGCC
645 CATATCTCCCTGGTCAGCAGTGAAATAGG--T--G--A--ATCC
* * *
20767850 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCATATCTCCCTGGTCAGCAGT
1 -TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGT
*
20767914 GAAATAGG-TGAA
64 GGAATAGGCTGAA
20767926 TCCTTTTTCC
Statistics
Matches: 2736, Mismatches: 581, Indels: 355
0.75 0.16 0.10
Matches are distributed among these distances:
670 5 0.00
671 12 0.00
672 64 0.02
673 110 0.04
674 102 0.04
675 14 0.01
676 7 0.00
677 7 0.00
678 6 0.00
679 16 0.01
680 12 0.00
681 222 0.08
682 287 0.10
683 188 0.07
684 1241 0.45
685 27 0.01
686 6 0.00
687 2 0.00
688 2 0.00
689 4 0.00
690 9 0.00
691 32 0.01
692 313 0.11
693 43 0.02
694 5 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (680 bp):
TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGG
AATAGGCTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
CTTATCTCCCTAAGCAGTAGTAGAACAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAG
GGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAA
GTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACA
GTGGAATAGGTTGAAGATTGTAAGTCAATCTCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTC
CCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCTTATCTCCCTGGTCAGCAATAGAATAGG
TTGAAGACTGCGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAATTATAGATCCTATCT
CCTAAAACAGTAGTGGAGTAGATAGAAGACGGCGAATCTTATCTTCCCAAGTAGTAGGGAAGAAG
ATTTAAGCCACTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATC
TCCCTGGTCAGCAGTGAAATAGGTGAATCC
Found at i:20765126 original size:34 final size:35
Alignment explanation
Indices: 20765078--20765144 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
20765068 TTGTAAGTCA
*
20765078 TATCTCCCAGGTCAGCAGTGAAATAGG-TGAATCC
1 TATCTCCCAGGTCAGAAGTGAAATAGGTTGAATCC
** *
20765112 TATCTCCCTTGTCAGAAGTGGAATAGGTTGAAT
1 TATCTCCCAGGTCAGAAGTGAAATAGGTTGAAT
20765145 ATTGTGAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 23 0.82
35 5 0.18
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (35 bp):
TATCTCCCAGGTCAGAAGTGAAATAGGTTGAATCC
Found at i:20765169 original size:78 final size:78
Alignment explanation
Indices: 20765034--20765183 Score: 212
Period size: 78 Copynumber: 1.9 Consensus size: 78
20765024 CCACTCGCCT
*
20765034 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGA
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGA
20765099 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * * *
20765112 TATCTCCCTTGTCAGAAGTGGAATAGGTTGAATATTGTGAA-TCCTATCTCTCTGGTCAGTAGTG
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAGATTGT-AAGTCATATCTCCCAGGTCAGCAGTG
*
20765176 TAATAGGT
65 AAATAGGT
20765184 TGTAGATTGT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
78 61 0.97
79 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (78 bp):
TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAGGTCAGCAGTGA
AATAGGTGAATCC
Found at i:20765460 original size:34 final size:34
Alignment explanation
Indices: 20765412--20765481 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
20765402 GTTGAAGACT
*
20765412 GTGAGTCTTATCTCCCTGGTCAACAGTGGAATAG
1 GTGAATCTTATCTCCCTGGTCAACAGTGGAATAG
**
20765446 GTGAATCTTATCTCCCTGGTCAGTAGTGGAATAG
1 GTGAATCTTATCTCCCTGGTCAACAGTGGAATAG
20765480 GT
1 GT
20765482 TGATGATTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (34 bp):
GTGAATCTTATCTCCCTGGTCAACAGTGGAATAG
Found at i:20765547 original size:122 final size:122
Alignment explanation
Indices: 20765330--20765550 Score: 299
Period size: 122 Copynumber: 1.8 Consensus size: 122
20765320 AGCCACTAGC
*
20765330 CTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGT
* *
20765395 GGAATAGGTTGAAGACTGTGAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTGAAT
66 GGAATAGGTTGAAGAATGTCAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTGAAT
* * * *
20765452 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGATGATTGT-AGATCCTATCTCCCTGAG-CAGCA
1 CTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGATTATAAG-TCCTATCTCCCTG-GTCAGCA
20765515 GTGGAGA-AGGTTGAA-AAT-TACAGATCTTATCTCCCT
64 GTGGA-ATAGGTTGAAGAATGT-CAG-TCTTATCTCCCT
20765551 AGGCATTAGT
Statistics
Matches: 87, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
120 1 0.01
121 6 0.07
122 78 0.90
123 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (122 bp):
CTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGT
GGAATAGGTTGAAGAATGTCAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTGAAT
Found at i:20765803 original size:298 final size:292
Alignment explanation
Indices: 20764736--20765832 Score: 1097
Period size: 298 Copynumber: 3.7 Consensus size: 292
20764726 TTATGAGTCC
* ** * * *
20764736 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAGTGG
* * **
20764801 AATAGGTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATTTTATCTCCC
66 AATAGGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* *
20764866 TGGTCAGCAATAGAATAGG-TTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTTGGT
131 TGGTCAGC---AG-ATAGGATTG-AG--TGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
* * * * * * *
20764930 TGAAAATTATAGATCCTATCT-CCTAAAACAGTAGTGGAGTAGATAGAAAACGGCGAATCTTATC
189 TGAAAATTACAGATCTTATCTCCCT-AAACAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATC
*
20764994 TTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTCGCCT
253 TTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
*
20765034 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCC-AGGTCAGCAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTA-GTCAGCAGTG
* * *
20765098 AAATAGGTGAATCCTATCTCCCTTGTCAGA-AGTGGAATAGGTTGAATATTGTGAATCCTATCTC
65 GAATAGGTGAATCCTATCTCCCTGGTCA-ACAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
* * *
20765162 TCTGGTCAGTAGTGTAATAGG-TTGTAGATTGTAAATCCTATCTCCCTGAGCAGCAGTGGAGTAG
129 CCTGGTCAGCA--G--ATAGGATTG-AG--TGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAG
* * * *
20765226 GTTGAAAATTACAGATCTTAACTCTCTAAATAGTAGTAGAGCAGATCGAAGACGGCGATTCTTAA
187 GTTGAAAATTACAGATCTTATCTCCCTAAACAGTAGTAGAGCAGATCGAAGACGGCGATTCTTAT
* * * *
20765291 ATTCCCAAGCTAGTAGGGAAGCAGATTTGAGCCACTAGCCT
252 CTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * * * * *
20765332 TATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAGTGG
*
20765397 AATAGGTTGAAGACTGTGAGTCTTATCTCCCTGGTCAACAGTGG-A-A---T--AG---GTGAAT
66 AATAGG-T---GA-----A-TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAAT
* *
20765452 CTTATCTCCCTGGTCAGTAGTGGAATAGG-TTGA-TGATTGTAGATCCTATCTCCCTGAGCAGCA
121 CCTATCTCCCTGGTCAGCA---G-ATAGGATTGAGTG--TG-A-ATCCTATCTCCCTGAGCAGCA
* ** *
20765515 GTGGAGAAGGTTGAAAATTACAGATCTTATCTCCCTAGGCATTAGTAGAGCAGATCGAAGACGGC
178 GTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAACAGTAGTAGAGCAGATCGAAGACGGC
*
20765580 GATTCTTATCTTCCTAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
243 GATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* *
20765630 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAGTGG
*
20765695 AATAGGTTCAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAG
66 AATAGG-T---GA-----A-TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAA-
* * * *
20765759 TCCTATCTCCCTGGTCAGCAG-T-GGATT-AG-GTGAATCCGATCTCCCTG-GTGAGCAGTAGAA
120 TCCTATCTCCCTGGTCAGCAGATAGGATTGAGTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAG
*
20765819 TAGGTTGAAGATTA
184 TAGGTTGAAAATTA
20765833 TGAATCCTAT
Statistics
Matches: 682, Mismatches: 80, Indels: 74
0.82 0.10 0.09
Matches are distributed among these distances:
294 2 0.00
295 1 0.00
296 1 0.00
297 4 0.01
298 604 0.89
299 6 0.01
300 3 0.00
301 1 0.00
302 6 0.01
303 5 0.01
305 3 0.00
306 1 0.00
307 5 0.01
308 40 0.06
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (292 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAGTGG
AATAGGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
TGGTCAGCAGATAGGATTGAGTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAT
TACAGATCTTATCTCCCTAAACAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAG
GTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
Found at i:20765892 original size:122 final size:122
Alignment explanation
Indices: 20765675--20765911 Score: 325
Period size: 122 Copynumber: 1.9 Consensus size: 122
20765665 TTTAAGTCCT
* * * * *
20765675 ATCTCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGGA
1 ATCTCCCTAGTCAGCAGTAGAATAGGTTCAAGATTATGAATCCTATCTCCCTGGTCAACAATGGA
* *
20765740 ATAGGTTGAAGATTGTAAGTCCTATCTCCCTG-GTCAGCAGTGGATTAGGTGAATCCG
66 ATAGGCTGAAGATTGTAAGTCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTGAATCCG
* * * *
20765797 ATCTCCCTGGTGAGCAGTAGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAATGGA
1 ATCTCCCTAGTCAGCAGTAGAATAGGTTCAAGATTATGAATCCTATCTCCCTGGTCAACAATGGA
* *
20765862 ATAGGCTGAAGATTGTGAA-TCTTATGTCCCTGAGCAGCAGTGGAGTAGGT
66 ATAGGCTGAAGATTGT-AAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
20765912 TGAAAATTAC
Statistics
Matches: 100, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
122 97 0.97
123 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (122 bp):
ATCTCCCTAGTCAGCAGTAGAATAGGTTCAAGATTATGAATCCTATCTCCCTGGTCAACAATGGA
ATAGGCTGAAGATTGTAAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTGAATCCG
Found at i:20766184 original size:78 final size:77
Alignment explanation
Indices: 20766056--20766203 Score: 233
Period size: 78 Copynumber: 1.9 Consensus size: 77
20766046 AGATTGTAAG
* * *
20766056 TCCTATCTCCCTAGTCAGCATGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAGCAGT
1 TCCTATCTCCCTAGTCAGCATGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTCGTCAGCAAT
20766121 GGAATGGGTGAA
66 GGAATGGGTGAA
* * *
20766133 TCCTATCTCCCTGGTCAGCAGTGGAATCGGTTGAAGATTTTGAATCCTATCTCCCTCGTCAGCAA
1 TCCTATCTCCCTAGTCAGCA-TGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTCGTCAGCAA
20766198 TGGAAT
65 TGGAAT
20766204 AGGTTGAAGA
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
77 19 0.30
78 45 0.70
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.30
Consensus pattern (77 bp):
TCCTATCTCCCTAGTCAGCATGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTCGTCAGCAAT
GGAATGGGTGAA
Found at i:20766571 original size:78 final size:78
Alignment explanation
Indices: 20766441--20766592 Score: 207
Period size: 78 Copynumber: 1.9 Consensus size: 78
20766431 GATTCTGAGT
* *
20766441 CCTATATCCCTGGTCAACACTGGAATAGGTTGAAGATTCTAAGTCCTCTCTCCCCGGTCAGCAGT
1 CCTATATCCCTGGTCAACACTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCCGGTCAGAAGT
20766506 GAAATAGGTGAAA
66 GAAATAGGTGAAA
* * * * * *
20766519 CCTATCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGAAG
1 CCTATATCCCTGGTCAACACTGGAATAGGTTGAAGATTCT-AAGTCCTATCTCCCCGGTCAGAAG
*
20766583 TGGAATAGGT
65 TGAAATAGGT
20766593 TGAAGATTGT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
78 62 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (78 bp):
CCTATATCCCTGGTCAACACTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCCGGTCAGAAGT
GAAATAGGTGAAA
Found at i:20766615 original size:122 final size:122
Alignment explanation
Indices: 20766397--20767017 Score: 440
Period size: 122 Copynumber: 5.0 Consensus size: 122
20766387 GATTGTAAGT
* * * * *
20766397 CCTATCTCCCTAGTCAGTAGTGGAATAGGTTGAGGATTCTGAGTCCTATATCCCTGGTCA-ACAC
1 CCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGGTCAGA-AG
*
20766461 TGGAATAGGTTGAAGATTCT-AAGTCCTCTCTCCCCGGTCAGCAGTGAAATAGGTGAAA
65 TGGAATAGGTTGAAGATTCTGAA-TCCTATCTCCCCGGTCAGCAGTGAAATAGGTGAAA
* * *
20766519 CCTATCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGAAGT
1 CCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGGTCAGAAGT
* * * * * * *
20766584 GGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAGCGGATTAGGTGAAT
66 GGAATAGGTTGAAGATTCTGAATCCTATCTCCCCGGTCAGCAGTGAAATAGGTGAAA
** * * * *
20766641 CCTATCTCCCTGGTCAACAGTGGAATAAGTTAAAGATTCTGAATACTATCTCCCTGAG-CAGCAG
1 CCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTG-GTCAGAAG
* * * *
20766705 TGGAGA-AGGTTGAAAATTACTG-ATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGA-CG
65 TGGA-ATAGGTTGAAGATT-CTGAATCCTATCTCCC----C-G--GT-CAGCAG-T-GAA-ATAG
* **
20766767 GCGATT
117 GTGAAA
* * * * * *** *
20766773 CTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT--AGCCTTATCTCCCTGGTCAG
1 CCTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTCTGAATCC-TATCTCCCTGGTCAG
* * * * * *
20766834 TAGTGGAATAGGTTGAAGATT-TTAAGTCATATCTCCCTGGTCTGCAGTGAAATAGGAGAATA
62 AAGTGGAATAGGTTGAAGATTCTGAA-TCCTATCTCCCCGGTCAGCAGTGAAATAGGTGAA-A
* * * * * * *
20766896 -CTTTGTCCCTTGTCAGTAATGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGT
1 CCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGGTCAGAAGT
* * **
20766960 GTAATAGGTTGAAGATTGTGAATCCTATCTCCCTC-GTCAATAGTGAAATAGGTTGAAA
66 GGAATAGGTTGAAGATTCTGAATCCTATCTCCC-CGGTCAGCAGTGAAATAGG-TGAAA
20767018 ATTGTGAATC
Statistics
Matches: 383, Mismatches: 83, Indels: 66
0.72 0.16 0.12
Matches are distributed among these distances:
120 2 0.01
121 17 0.04
122 254 0.66
123 16 0.04
124 4 0.01
125 2 0.01
127 2 0.01
129 2 0.01
130 5 0.01
131 5 0.01
132 56 0.15
133 15 0.04
134 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (122 bp):
CCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGGTCAGAAGT
GGAATAGGTTGAAGATTCTGAATCCTATCTCCCCGGTCAGCAGTGAAATAGGTGAAA
Found at i:20766952 original size:78 final size:78
Alignment explanation
Indices: 20766823--20766967 Score: 227
Period size: 78 Copynumber: 1.9 Consensus size: 78
20766813 TAGCCTTATC
* * *
20766823 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGAAATA
1 TCCCTGGTCAGTAATGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGAAATA
20766888 GGAGAATACTTTG
66 GGAGAATACTTTG
* * * *
20766901 TCCCTTGTCAGTAATGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGTAATA
1 TCCCTGGTCAGTAATGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGAAATA
20766966 GG
66 GG
20766968 TTGAAGATTG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 60 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (78 bp):
TCCCTGGTCAGTAATGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGAAATA
GGAGAATACTTTG
Found at i:20767733 original size:386 final size:384
Alignment explanation
Indices: 20767159--20768026 Score: 1107
Period size: 386 Copynumber: 2.3 Consensus size: 384
20767149 GCACAAGCGT
* * * * * * *
20767159 TATCTTCCTGGTTAGTAGTGGAATAGGTTGACGATT-GTAAGT-CCTATCTCCCTAGTCAGCAGT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTAGGAA-TCCCTATCTCCCTGGTCAGCAGT
* * * * *
20767222 GGAATAGGCTGAAAATTTTGAATCCAATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAATTATAG
65 GGAATAGGTTGAAGATTGTGAATCCAATATCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAG
* * *
20767287 ATATTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGT
130 ATATTATCTCCCAAAGCAGTAGTAGAGCAAATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGT
* * * *
20767352 AGGGAAGTAGATTTAAGCTACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT
195 AGGGAAGAAAATTTAAGCCACTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT
* * *
20767417 AAGTCCTATCTCCCTGGTCAGCAGCGGGATAGGTTGAAG-ATTGAGAGACTTATCTCCCTGGTCA
260 AAGTCCTATCTCCCTAGTCAGCA-CGGAATAGGTTGAAGCACT---AGACTTATCTCCCTGGTCA
* *
20767481 ACAATAGAATAGGTTTAAGATTGTAAGT-ACTATCTCCCTGGTCAGCAATGGAATAGGTGAATCA
321 ACAATAGAATAGGTTGAAGATTGTAAGTCA-TATCTCCCTGGTCAGCAATGAAATAGGTGAATCA
* * * * *
20767545 TATCTCCCTGGTCAGCAGTGGACTTGGTTAAAGATTGGGAAT-CTTATCTCCCTGGTCAGCAATG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTAGGAATCCCTATCTCCCTGGTCAGCAGTG
* * * *
20767609 GAATAGGTTGAAGACTGCGAATCCAATGTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
66 GAATAGGTTGAAGATTGTGAATCCAATATCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
* * *
20767674 TCTTATCTTCCAAAGCAGTAGTGGAGCAAATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTA
131 TATTATCTCCCAAAGCAGTAGTAGAGCAAATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTA
* *
20767739 GGGAAGAAAATTTCAGCCAGTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTA
196 GGGAAGAAAATTTAAGCCACTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTA
* * * ** *
20767804 AGTCCTATCTCCCTAGTCAGCATGGAATAGGTTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAG
261 AGTCCTATCTCCCTAGTCAGCACGGAATAGGTTGAAG-CACTAGACTTATCTCCCTGGTCAACAA
* * *
20767869 TGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCC
325 TAGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAATGAAATAGGTGAATCA
* * * * * * * * *
20767929 TTTTTCCCTTGTTAGTAGTGGAATAGGTTGAAGATTATGAGTCCCTATCTCTCTGGTCAGCAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTAGGAATCCCTATCTCCCTGGTCAGCAGTG
* * *
20767994 TAATAGGTTGAAGATTGTGAATCCTATCTCCCT
66 GAATAGGTTGAAGATTGTGAATCCAATATCCCT
20768027 CGTCAATAGT
Statistics
Matches: 411, Mismatches: 66, Indels: 11
0.84 0.14 0.02
Matches are distributed among these distances:
384 103 0.25
385 59 0.14
386 244 0.59
387 5 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (384 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTAGGAATCCCTATCTCCCTGGTCAGCAGTG
GAATAGGTTGAAGATTGTGAATCCAATATCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
TATTATCTCCCAAAGCAGTAGTAGAGCAAATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTA
GGGAAGAAAATTTAAGCCACTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTA
AGTCCTATCTCCCTAGTCAGCACGGAATAGGTTGAAGCACTAGACTTATCTCCCTGGTCAACAAT
AGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAATGAAATAGGTGAATCA
Found at i:20767899 original size:86 final size:87
Alignment explanation
Indices: 20767753--20767922 Score: 288
Period size: 86 Copynumber: 2.0 Consensus size: 87
20767743 AGAAAATTTC
* *
20767753 AGCCAGTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT
1 AGCCACTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCT
*
20767818 AGTCAGCA-TGGAATAGGTTTA
66 AGTCAGCAGTGAAATAGGTTTA
*
20767839 AGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCT
1 AGCCACTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCT
*
20767904 GGTCAGCAGTGAAATAGGT
66 AGTCAGCAGTGAAATAGGT
20767923 GAATCCTTTT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
86 69 0.88
87 9 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.29
Consensus pattern (87 bp):
AGCCACTAGCCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCT
AGTCAGCAGTGAAATAGGTTTA
Found at i:20768822 original size:298 final size:297
Alignment explanation
Indices: 20768500--20769169 Score: 899
Period size: 298 Copynumber: 2.2 Consensus size: 297
20768490 GATTGTGAGT
* ** *
20768500 CTTATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTACAATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT-CAATCTCCCTGGTCAGCAGT
* * * *
20768565 GGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGGACTTGGTTGAAGAGTGTGAATCCTATCTC
65 GGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGCAATAGGTTGAAGAGTATGAATCCTATCTC
* * *
20768630 CCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATATCCTTGAGTAGTAGTGGAGTAGG
130 CCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATATCCCTGAGCAGCAGTGGAGTAGG
* *
20768695 TTGAAAATTAAAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAAGGCGAATCTTACC
195 TTGAAAATTAAAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACC
*
20768760 TTCCCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGC
260 TTCCCAAGGTAGCAGGGAAGAAGATATAAGCCACTAGC
* *
20768798 CTTATCTCCCGGGTCAGTAGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA-ATCTCCCTGGTCAGCAGT
* * * * * * *
20768863 GAAATAGGTGAGTCCTATCTCCCTTGTCAGTAGTGCAATAGGTTGAAGATTATGATTCCTATCTC
65 GGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGCAATAGGTTGAAGAGTATGAATCCTATCTC
* * * * * * *
20768928 CCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCGTATCTCCCTGAGCAGCAGTGGAGTATG
130 CCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATATCCCTGAGCAGCAGTGGAGTAGG
* * * * * *
20768993 TTGAAAATTACAGATCCTATTTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATC
195 TTGAAAATTAAAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACC
* * * *
20769058 TTTCCAAGGTAGTAGGGAAGCAGATATAAGCTACTAGC
260 TTCCCAAGGTAGCAGGGAAGAAGATATAAGCCACTAGC
* * * * * *
20769096 CTTATCTCCCTCGTAAGTAGTGGAATAGGTTGATGATTGTAAGTCCTATCTCCCTAGTCAACAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGT-CAATCTCCCTGGTCAGCAGT
20769161 GGAATAGGT
65 GGAATAGGT
20769170 TGACGATTAT
Statistics
Matches: 321, Mismatches: 49, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
297 2 0.01
298 318 0.99
299 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (297 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCAATCTCCCTGGTCAGCAGTG
GAATAGGTGAATCATATCTCCCTGGTCAGAAGTGCAATAGGTTGAAGAGTATGAATCCTATCTCC
CTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGT
TGAAAATTAAAGATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACCT
TCCCAAGGTAGCAGGGAAGAAGATATAAGCCACTAGC
Found at i:20768892 original size:34 final size:34
Alignment explanation
Indices: 20768839--20768905 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
20768829 GAAGACTGTA
20768839 AGTCATATCTCCCTGGTCAGCAGTGAAATAGGTG
1 AGTCATATCTCCCTGGTCAGCAGTGAAATAGGTG
* * * *
20768873 AGTCCTATCTCCCTTGTCAGTAGTGCAATAGGT
1 AGTCATATCTCCCTGGTCAGCAGTGAAATAGGT
20768906 TGAAGATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (34 bp):
AGTCATATCTCCCTGGTCAGCAGTGAAATAGGTG
Found at i:20768929 original size:78 final size:78
Alignment explanation
Indices: 20768800--20768949 Score: 219
Period size: 78 Copynumber: 1.9 Consensus size: 78
20768790 CCACTAGCCT
* *
20768800 TATCTCCCGGGTCAGTAGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCCGGGTCAGTAGTGCAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGTGA
20768865 AATAGGTGAGTCC
66 AATAGGTGAGTCC
** * * * * *
20768878 TATCTCCCTTGTCAGTAGTGCAATAGGTTGAAGATTATGATTCCTATCTCCCTGGTCAGCAGTGT
1 TATCTCCCGGGTCAGTAGTGCAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGTGA
20768943 AATAGGT
66 AATAGGT
20768950 TGAAGATTGT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (78 bp):
TATCTCCCGGGTCAGTAGTGCAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGTGA
AATAGGTGAGTCC
Done.