Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 69 of 150
Found at i:20768975 original size:386 final size:381
Alignment explanation
Indices: 20768235--20768949 Score: 990
Period size: 386 Copynumber: 1.9 Consensus size: 381
20768225 CGATTGTAAG
* * * *
20768235 TCCTATCTCCCTAGTCAGTAGTGGAATAGGCTGAAAATTGTGAATCCTATATCCCTGAGCAGCAG
1 TCCTATCTCCCTAGTCAGCAATGGAATAGGCTGAAAACTGCGAATCCTATATCCCTGAGCAGCAG
* * ** *
20768300 TGGAGTAGGTTGCAAATTATAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAAGACGGCG
66 TGGAGTAGGTTGAAAATTAAAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCG
* * * * * *
20768365 ATTCTTATCTTCCCAGGGTAGTAGGGAAGTAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGT
131 AATCTTACCTTCCCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCGGGTCAGT
* * *
20768430 AGTAGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTG
196 AGTAGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGT-GGATA-GAT-AAG--TG
* * * * *
20768495 TGAGTCTTATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTACAATCTCCCTGGTCA
256 TGAGTCCTATCTCCCTGGTCAACAGTGCAATAGGTTGAAGATTATAAGTACAATCTCCCTGGTCA
*
20768560 GCAGTGGAATAGGTGAATCATATCTCCCTGGTCAGAAGTGGACTTGGTTGAAGAGTGTGAA
321 GCAGTGAAATAGGTGAATCATATCTCCCTGGTCAGAAGTGGACTTGGTTGAAGAGTGTGAA
* * * * * *
20768621 TCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATATCCTTGAGTAGTAG
1 TCCTATCTCCCTAGTCAGCAATGGAATAGGCTGAAAACTGCGAATCCTATATCCCTGAGCAGCAG
*
20768686 TGGAGTAGGTTGAAAATTAAAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAAGGCG
66 TGGAGTAGGTTGAAAATTAAAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCG
20768751 AATCTTACCTTCCCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCGGGTCAGT
131 AATCTTACCTTCCCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCGGGTCAGT
*
20768816 AGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGT-GA-A-AT-AG-GTGAGT
196 AGTAGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGTGGATAGATAAGTGTGAGT
* ** * * * *
20768876 CCTATCTCCCTTGTCAGTAGTGCAATAGGTTGAAGATTATGATTCCTATCTCCCTGGTCAGCAGT
261 CCTATCTCCCTGGTCAACAGTGCAATAGGTTGAAGATTATAAGTACAATCTCCCTGGTCAGCAGT
*
20768941 GTAATAGGT
326 GAAATAGGT
20768950 TGAAGATTGT
Statistics
Matches: 290, Mismatches: 39, Indels: 10
0.86 0.12 0.03
Matches are distributed among these distances:
376 67 0.23
379 2 0.01
381 1 0.00
383 1 0.00
384 2 0.01
386 217 0.75
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (381 bp):
TCCTATCTCCCTAGTCAGCAATGGAATAGGCTGAAAACTGCGAATCCTATATCCCTGAGCAGCAG
TGGAGTAGGTTGAAAATTAAAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCG
AATCTTACCTTCCCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCGGGTCAGT
AGTAGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGTGGATAGATAAGTGTGAGT
CCTATCTCCCTGGTCAACAGTGCAATAGGTTGAAGATTATAAGTACAATCTCCCTGGTCAGCAGT
GAAATAGGTGAATCATATCTCCCTGGTCAGAAGTGGACTTGGTTGAAGAGTGTGAA
Found at i:20769102 original size:386 final size:386
Alignment explanation
Indices: 20768710--20769491 Score: 918
Period size: 386 Copynumber: 2.0 Consensus size: 386
20768700 AATTAAAGAT
* * * *
20768710 CTTATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGAAGGCGAA-TCTTACCTTCCCAAGGT-AG
1 CTTATCTCCC-AAGTAAGTAGTGGAACAGATCGAAGAAGG-GAAGTCCTACC-TCCCAA-GTCAA
* * ** *
20768772 CAG-GGAAGAAGATTTAAG-CCACT-AG-CCTTATCTCCCGGGTCAGTAGTGGAATAGGTTGAAG
62 CAGTGGAA-AAGATTGAAGACCA-TGAGTCC-TATCTCCCGAGTCAACAGTGGAATAGATTGAAG
* * * *
20768833 ACTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAGTCCTATCTCCCTTGTCAGTAGTG
124 ACTGTAAGTCAAATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTGGTCAGCAGTG
*
20768898 CAATAGGTTGAAGATTATG-ATTCCTATCTCCCTGGTCAGCAGT-GTAATAGGTTGAAGATTGTG
189 CAATAGGTTGAAGATTATGAATT-CTATCTCCCTGGTCAGCAATAG-AATAGGTTGAAGATTGTG
* * * * *
20768961 AATCGTATCTCCCTGAGCAGCAGTGGAGTATGTTGAAAATTA-CAGATCCTATTTCCCTAAGCAG
252 AATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTATC-GATCCTATCTCCCAAAGCAG
* * * * *
20769025 TAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAGGGAAGCAGATATAAGCT
316 TAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGAAAGAAGATATAAGCC
20769090 ACTAGC
381 ACTAGC
** * * * * ** * * *
20769096 CTTATCTCCCTCGTAAGTAGTGGAATAGGTTGATGATTGTAAGTCCTATCTCCCTAGTCAACAGT
1 CTTATCTCCCAAGTAAGTAGTGGAACAGATCGAAGAAGGGAAGTCCTACCTCCCAAGTCAACAGT
* * * ** * * *
20769161 GGAATAGGTTGACGATTATGAGTCCTATCTCCCTAGTTAACAGTGGAATAGATTGAAGATTGTAA
66 GGAAAAGATTGAAGACCATGAGTCCTATCTCCCGAGTCAACAGTGGAATAGATTGAAGACTGTAA
* * * *
20769226 GTCAAATCTCCTTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGG
131 GTCAAATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGCAATAGG
*
20769291 TTGAAGATTGTGAATTCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATC
196 TTGAAGATTATGAATTCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATC
* * *
20769356 TCCCTGACCAGCAGTGGAGTAGGTTGAAAATTATCGATCTTATCTCCCAAAGCAGTAGTGGAGTA
261 TCCCTGACCAGCAGTGGAGTAGGTTGAAAATTATCGATCCTATCTCCCAAAGCAGTAGTAGAGCA
* * *
20769421 GATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGAAAGAATATTTAAGCCACTCGC
326 GATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGAAAGAAGATATAAGCCACTAGC
20769482 CTTATCTCCC
1 CTTATCTCCC
20769492 TGGTCAGGAG
Statistics
Matches: 332, Mismatches: 54, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
384 2 0.01
385 19 0.06
386 304 0.92
387 7 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (386 bp):
CTTATCTCCCAAGTAAGTAGTGGAACAGATCGAAGAAGGGAAGTCCTACCTCCCAAGTCAACAGT
GGAAAAGATTGAAGACCATGAGTCCTATCTCCCGAGTCAACAGTGGAATAGATTGAAGACTGTAA
GTCAAATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGCAATAGG
TTGAAGATTATGAATTCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATC
TCCCTGACCAGCAGTGGAGTAGGTTGAAAATTATCGATCCTATCTCCCAAAGCAGTAGTAGAGCA
GATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGAAAGAAGATATAAGCCACTAGC
Found at i:20769262 original size:298 final size:293
Alignment explanation
Indices: 20768518--20769295 Score: 703
Period size: 298 Copynumber: 2.6 Consensus size: 293
20768508 TCTGGTCAAC
* * * * * * * *
20768518 AGTGGAATAGTTTGAAGATTGTAAGTACA-ATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATA
1 AGTGGAATAGGTTGAAGACTGTAAGT-CATATCTCCCTAGTCAACAGTGAAATAGATGAGTCCTA
* * * * * * * ** * *
20768582 TCTCCCTGGTCAGA-AGTGGACTTGGTTGAAGAGTGTGAA-TCCTATCTCCCTGGTCAGCAATGG
65 TCTCCCTAGTCA-ACAGTGCAATAGATTGAAGATTAT-AAGTCAAATCTCCCTGGTCAGCAGTGT
* * * *
20768645 AATAGGTTGAAGACTGCGAATCCTATATCCTTGAGT-AGTAGTGGAGTAGGTTGAAAATTAAAGA
128 AATA-G-T-AAG--TGTGAATCCTATCTCCCTG-GTCAGCAGTGGAGTAGGTTGAAAATTAAAGA
* *
20768709 TCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGCA
187 TCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGCA
* * *
20768774 GGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCGGGTCAGT
252 GGGAAGAAGATATAAGCCACTAGCCTTATCTCCCGCGTAAGT
* * *
20768816 AGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAGTCCTAT
1 AGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTAGTCAACAGTGAAATAGATGAGTCCTAT
* ** * * * **
20768881 CTCCCTTGTCAGTAGTGCAATAGGTTGAAGATTATGATTCCTATCTCCCTGGTCAGCAGTGTAAT
66 CTCCCTAGTCAACAGTGCAATAGATTGAAGATTATAAGTCAAATCTCCCTGGTCAGCAGTGTAAT
* * *
20768946 AGGTTGAAGATTGTGAATCGTATCTCCCTGAG-CAGCAGTGGAGTATGTTGAAAATTACAGATCC
131 A-G-T-AAG--TGTGAATCCTATCTCCCTG-GTCAGCAGTGGAGTAGGTTGAAAATTAAAGATCC
* * * * * * *
20769010 TATTTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAGGG
190 TATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGCAGGG
* * *
20769075 AAGCAGATATAAGCTACTAGCCTTATCTCCCTCGTAAGT
255 AAGAAGATATAAGCCACTAGCCTTATCTCCCGCGTAAGT
* * *
20769114 AGTGGAATAGGTTGATGATTGTAAGTCCTATCTCCCTAGTCAACAGTGGAATAGGTTGACGATTA
1 AGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTAGTCAACAGT-GAA-A---T-A-G---A
* * * *
20769179 TGAGTCCTATCTCCCTAGTTAACAGTGGAATAGATTGAAGATTGTAAGTCAAATCTCCTTGGTCA
56 TGAGTCCTATCTCCCTAGTCAACAGTGCAATAGATTGAAGATTATAAGTCAAATCTCCCTGGTCA
* * *
20769244 GCAGTG-GA-A-T-AG-GTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAA
121 GCAGTGTAATAGTAAGTGTGAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAA
20769296 GATTGTGAAT
Statistics
Matches: 404, Mismatches: 61, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
297 4 0.01
298 329 0.81
299 3 0.01
300 1 0.00
301 2 0.00
303 2 0.00
304 1 0.00
305 1 0.00
306 1 0.00
307 1 0.00
308 59 0.15
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (293 bp):
AGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTAGTCAACAGTGAAATAGATGAGTCCTAT
CTCCCTAGTCAACAGTGCAATAGATTGAAGATTATAAGTCAAATCTCCCTGGTCAGCAGTGTAAT
AGTAAGTGTGAATCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAAATTAAAGATCCTATCTC
CCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGCAGGGAAGAAG
ATATAAGCCACTAGCCTTATCTCCCGCGTAAGT
Found at i:20769313 original size:78 final size:78
Alignment explanation
Indices: 20769183--20769335 Score: 218
Period size: 78 Copynumber: 2.0 Consensus size: 78
20769173 CGATTATGAG
* *
20769183 TCCTATCTCCCTAGTTAACAGTGGAATAGATTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAG
1 TCCTATCTCCCTAGTTAACAGTGGAATAGATTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAA
*
20769248 TGGAATAGGTGAA
66 TAGAATAGGTGAA
* * * * *
20769261 TCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATTC-TATCTCCCTGGTCAGCA
1 TCCTATCTCCCTAGTTAACAGTGGAATAGATTGAAGATTGT-AAGTCAAATCTCCCTGGTCAGCA
20769325 ATAGAATAGGT
65 ATAGAATAGGT
20769336 TGAAGATTGT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
78 62 0.94
79 4 0.06
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.31
Consensus pattern (78 bp):
TCCTATCTCCCTAGTTAACAGTGGAATAGATTGAAGATTGTAAGTCAAATCTCCCTGGTCAGCAA
TAGAATAGGTGAA
Found at i:20769357 original size:122 final size:122
Alignment explanation
Indices: 20769139--20769379 Score: 295
Period size: 122 Copynumber: 2.0 Consensus size: 122
20769129 TGATTGTAAG
* * * *
20769139 TCCTATCTCCCTAGTCAACAGTGGAATAGGTTGACGATTATGAGTCCTATCTCCCTAGTTAACAG
1 TCCTATCTCCCTAGTCAACAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTAGTCAACAA
* * **
20769204 TGGAATAGATTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGGAATAGGTGAA
66 TAGAATAGATTGAAGATTGTAAGTCAAATCTCCCTGACCAGCAGTGGAATAGGTGAA
* * * * * * *
20769261 TCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATTCTATCTCCCTGGTCAGCAA
1 TCCTATCTCCCTAGTCAACAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTAGTCAACAA
* ** *
20769326 TAGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGACCAGCAGTGGAGTAGGT
66 TAGAATAGATTGAAGATTGT-AAGTCAAATCTCCCTGACCAGCAGTGGAATAGGT
20769380 TGAAAATTAT
Statistics
Matches: 99, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
122 97 0.98
123 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (122 bp):
TCCTATCTCCCTAGTCAACAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTAGTCAACAA
TAGAATAGATTGAAGATTGTAAGTCAAATCTCCCTGACCAGCAGTGGAATAGGTGAA
Found at i:20769400 original size:298 final size:295
Alignment explanation
Indices: 20769186--20771755 Score: 1062
Period size: 298 Copynumber: 8.6 Consensus size: 295
20769176 TTATGAGTCC
* * * *
20769186 TATCTCCCTAGTTAACAGTGGAATAGATTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGG
1 TATCTCCCTAGTCAACAGTGGAATAGATTGAAGATTGTAAGTCAAATATCCCTGGTCAGCAGTGA
* *
20769251 AATAGGTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATTCTATCTCCC
66 AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
*
20769316 TGGTCAGCAATAG-AATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGT
131 TGGTCAGCAAT-GTAATAGGTTGAAGATTGTAAATCCTATCTCCCTGACCAGCAGTGGAGTAGGT
* * * *
20769380 TGAAAATTATC-GATCTTATCTCCCAAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATC
195 TGAAAATTA-CAGATCTTATCTCCC-TAGAAGTAGTGGAATAGATCGAAGACGGCGAATCCTATC
*
20769444 TTCCCAAGGTAGTAGGAAAGAATATTTAAGCCACTCGCCT
258 TTCCCAAGGTAGTAGGAAAGAATAATTAAG-CACTC-CCT
* ** * * *
20769484 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACGTCATATATCCCTGGTCAGCAGTGA
1 TATCTCCCTAGTCAACAGTGGAATAGATTGAAGATTGTAAGTCAAATATCCCTGGTCAGCAGTGA
* * * *
20769549 AATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAATCCTATCTCTC
66 AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* ** * * *
20769614 TGGTCAGTAATGTAATAGGTTGTTGATTGTAAATCCTATGTCCCTGAGCAGCAGTTGAGTAGGTT
131 TGGTCAGCAATGTAATAGGTTGAAGATTGTAAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTT
* * ** * * * *
20769679 GAAAATTACAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGATTCTTATATT
196 GAAAATTACAGATCTTATCTCCCT-AGAAGTAGTGGAATAGATCGAAGACGGCGAATCCTATCTT
* * * *
20769744 CCCAAGGTAGTAAGG-AAGCAGATTTAAGCCACTAGCCT
260 CCCAAGGTAGT-AGGAAAGAATAATTAAG-CACT-CCCT
* *** * ** * * *
20769782 TATCTCCCTGGTCGGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTAGTCAACAGTGGAATAGATTGAAGATTGTAAGTCAAATATCCCTGGTCAGCAGTGA
* * *
20769847 AATAGGTGAATCATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTGAATCCAATCTCCC
66 AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* * * * * * * ** * *
20769912 TGAG-CAGTAGTGGAGA-AGGTTGCAA-ATTATAGAT-CTGATCTCCCTAAGCATTAGTAGAGCA
131 TG-GTCAGCAATGTA-ATAGGTTG-AAGATTGTAAATCCT-ATCTCCCTGACCAGCAGTGGAGTA
* * * ** * * * ** *
20769973 GATCGAACACGAC-GATTCTTATATTCCC-A-AGGTAGTAAGGAAGTAGA-CTTAAG-CCAC-TA
192 GGTTGAAAATTACAGA-TCTTAT-CTCCCTAGAAGTAGT--GGAA-TAGATC-GAAGACGGCGAA
* * * * *
20770032 GCCTTAT-TTCAC-TGGTTAGTAGTGGAATAGGTTGAAGATTGTAAG---T--CT
251 TCC-TATCTTCCCAAGG-TAGTA--GGAA-A----GAATAAT-TAAGCACTCCCT
* * * ** ** * ** **
20770080 TATCTCCATGGTCAGCAGTGGAATAGATTGAAGATTGCGAGTCCTATCTCCCTCATCAATAGTGA
1 TATCTCCCTAGTCAACAGTGGAATAGATTGAAGATTGTAAGTCAAATATCCCTGGTCAGCAGTGA
* * * * ***
20770145 AATAGGTTGAAAATTGTGAATCCT-TGCTCCCTGAG-CAGCAGTGGAGTAGATTAAAAACTACAG
66 AATA----G------GTGAATCCTAT-CTCCCTG-GTCAGCAGTGGAATAGGTTGAAGA-TTGTG
* * * * ** ** * *
20770208 AAGT--TATCTCCC---TAAGCAGTAGTAGAGTAGATCGAAGACGGCGAATCTTATCTTCCC-AA
118 AA-TCCTATCTCCCTGGTCAGCAAT-GTA-A-TAGGTTGAAGATTGTAAATCCTATC-TCCCTGA
** * * * * *** * * * * * *
20770267 GGTAGTAG-GGAAGAAGATT-TAAGCCACTAG-CCTTATCTCTCTGGTCAGTAGTGGAATAGGTT
178 -CCAGCAGTGG-AGTAGGTTGAAAATTAC-AGATCTTATCTCCCTAG-AAGTAGTGGAATAGATC
**** * * * * ** *
20770329 GAAGA-TTTTAAGTCATATC-TCCC-TGGTCTGCAGTG--A-AATAGGT--G-AAT-CC-
239 GAAGACGGCGAA-TCCTATCTTCCCAAGGT-AGTAG-GAAAGAATAATTAAGCACTCCCT
* ** * * ** * *
20770378 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGCG
1 TATCTCCCTAGTCAACAGTGGAATAGATTGAAGATTGT-AAGTCAAATATCCCTGGTCAGCAGTG
* * * *
20770442 TAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTATAA
65 -AA-A---T--AG---GTGAATCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTGA
* * ** * * * ** * * *
20770506 ATCCTATCTCCCTAAG-CAG-AAGTGGAGCAGATCGAAGATGGCGATTCTTATCT---T-TCCA-
119 ATCCTATCTCCCT-GGTCAGCAA-TGTAATAGGTTGAAGATTGTAAATCCTATCTCCCTGACCAG
* ** * * * * *
20770564 -A-TGTAGTAGGCAAGCAGATATA-AGCCACTAGGCTTATCTCCCTGGTCAGTAGTGGAATAG-G
182 CAGTGGAGTAGG-TTGAAAAT-TACAG--A-T---CTTATCTCCCTAG-AAGTAGTGGAATAGAT
** * ** * ** ** *
20770625 CTGAAGATTG-TAAGTCGAATC-TCCTC--GGTCAGCAGTGGAATAGGTTGACGATTGTG-AGT-
238 C-GAAGACGGCGAA-TCCTATCTTCC-CAAGGT-AGTA--GGAA-AGAAT-A--ATTAAGCACTC
20770684 CC-
293 CCT
* * * * * * *
20770686 TATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGTATGTCCAAA-CTCCTTGGTCTGCAGTG
1 TATCTCCCTAGTCAACAGTGGAATAGATTGAAGATTGTAAGT-CAAATATCCCTGGTCAGCAGTG
* * * * *
20770750 CAATTGGTGAATTCTATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
65 AAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
*
20770815 CTGGTCAGCAATAG-AATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGG
130 CTGGTCAGCAAT-GTAATAGGTTGAAGATTGTAAATCCTATCTCCCTGACCAGCAGTGGAGTAGG
* * * *
20770879 TTGAAAATTATC-GATCTTATCTCCCAAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTAT
194 TTGAAAATTA-CAGATCTTATCTCCC-TAGAAGTAGTGGAATAGATCGAAGACGGCGAATCCTAT
*
20770943 CTTCCCAAGGTAGTAGGAAAGAATATTTAAGCCACTCGCCT
257 CTTCCCAAGGTAGTAGGAAAGAATAATTAAG-CACTC-CCT
* ** * * *
20770984 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACGTCATATATCCCTGGTCAGCAGTGA
1 TATCTCCCTAGTCAACAGTGGAATAGATTGAAGATTGTAAGTCAAATATCCCTGGTCAGCAGTGA
* * * *
20771049 AATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAATCCTATCTCTC
66 AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* ** * * *
20771114 TGGTCAGTAATGTAATAGGTTGTTGATTGTAAATCCTATGTCCCTGAGCAGCAGTTGAGTAGGTT
131 TGGTCAGCAATGTAATAGGTTGAAGATTGTAAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTT
* * * * * * * * *
20771179 GAAAATTACATATCGTATCTCTCTAAGTAGTTGTAGAGTAGATCGAAGACGGC-AATTCTTATAT
196 GAAAATTACAGATCTTATCTCCCT-AGAAGTAGTGGAATAGATCGAAGACGGCGAA-TCCTATCT
*** * * * * * * *
20771243 TCCCAAGCCGGTAGGGACGCAGATTTGAGCCACTAGCCT
259 TCCCAAGGTAGTAGGAAAGAATAATTAAG-CACT-CCCT
* ** * * * * * ** *
20771282 TATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTAGTCAACAGTGGAATAGATTGAAGATTGTAAGTCAAATATCCCTGGTCAGCAGT-G
* * *
20771347 AATAGGTTGAAGATTGTGAGTCCTATCTCCCTAGTCAACAGTGGAATAGG-TG-A-A---T--A-
65 AA-A---T--AG---GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * * * *
20771403 -CTCTCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCTTGAGCAGCAGT
121 CCTATCTCCCTGGTCAGCAATGTAATAGGTTGAAGATTGTAAATCCTATCTCCCTGACCAGCAGT
* * * * **
20771467 CGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGACCAGATCGAAGACGGCGA
186 GGAGTAGGTTGAAAATTACAGATCTTATCTCCC-TAGAAGTAGTGGAATAGATCGAAGACGGCGA
* * * * * *
20771532 AACTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
250 ATCCTATCTTCCCAAGGTAGTAGGAAAGAATAATTAAG-CACT-CCCT
* ** * * *
20771580 TATCTCCCTGGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTG
1 TATCTCCCT-AGTCAACAGTGGAATAGATTGAAGATTGTAAGTCAAATATCCCTGGTCAGCAGTG
* * * * * * * * *
20771645 AAATAGGTGAATCCTTTGTCCCTTGTTAGTAGTGGAATAGGTTGAAGATTATGAGTCCTTTCTCT
65 AAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
* * * *
20771710 CTAGTCAACAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCT
130 CTGGTCAGCAATGTAATAGGTTGAAGATTGTAAATCCTATCTCCCT
20771756 CGTCAATAGT
Statistics
Matches: 1769, Mismatches: 342, Indels: 321
0.73 0.14 0.13
Matches are distributed among these distances:
289 28 0.02
290 6 0.00
291 5 0.00
292 4 0.00
293 5 0.00
294 1 0.00
295 4 0.00
296 13 0.01
297 36 0.02
298 1238 0.70
299 142 0.08
300 11 0.01
301 8 0.00
302 7 0.00
303 6 0.00
304 14 0.01
305 21 0.01
306 8 0.00
307 18 0.01
308 163 0.09
309 24 0.01
310 7 0.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (295 bp):
TATCTCCCTAGTCAACAGTGGAATAGATTGAAGATTGTAAGTCAAATATCCCTGGTCAGCAGTGA
AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
TGGTCAGCAATGTAATAGGTTGAAGATTGTAAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTT
GAAAATTACAGATCTTATCTCCCTAGAAGTAGTGGAATAGATCGAAGACGGCGAATCCTATCTTC
CCAAGGTAGTAGGAAAGAATAATTAAGCACTCCCT
Found at i:20769492 original size:386 final size:386
Alignment explanation
Indices: 20768816--20769555 Score: 1090
Period size: 386 Copynumber: 1.9 Consensus size: 386
20768806 CCGGGTCAGT
* * *
20768816 AGTGGAATAGGTTGAAGACTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAGTCCTAT
1 AGTGGAATAGATTGAAGACTGTAAGTCAAATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTAT
* * *
20768881 CTCCCTTGTCAGTAGTGCAATAGGTTGAAGATTATGATTCCTATCTCCCTGGTCAGCAGTGTAAT
66 CTCCCTGGTCAGCAGTGCAATAGGTTGAAGATTATGATTCCTATCTCCCTGGTCAGCAATGTAAT
* * *
20768946 AGGTTGAAGATTGTGAATCGTATCTCCCTGAGCAGCAGTGGAGTATGTTGAAAATTACAGATCCT
131 AGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGATCCT
* * * * *
20769011 ATTTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAGGGA
196 ATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGAA
* * * *
20769076 AGCAGATATAAGCTACTAGCCTTATCTCCCTCGTAAGTAGTGGAATAGGTTGATGATTGTAAGTC
261 AGAAGATATAAGCCACTAGCCTTATCTCCCTCGTAAGGAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
20769141 CTATCTCCCTAGTCAACAGTGGAATAGGTTGACGATTATGAGTCCTATCTCCCTAGTTAAC
326 ATATATCCCTAGTCAACAGTGAAATAGGTTGACGATTATGAGTCCTATCTCCCTAGTTAAC
* * *
20769202 AGTGGAATAGATTGAAGATTGTAAGTCAAATCTCCTTGGTCAGCAGTGGAATAGGTGAATCCTAT
1 AGTGGAATAGATTGAAGACTGTAAGTCAAATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTAT
* * *
20769267 CTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATT-CTATCTCCCTGGTCAGCAATAG-A
66 CTCCCTGGTCAGCAGTGCAATAGGTTGAAGATTATG-ATTCCTATCTCCCTGGTCAGCAAT-GTA
20769330 ATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTATC-GAT
129 ATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTA-CAGAT
* * *
20769394 CTTATCTCCCAAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAG
193 CCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAG
* * * * * *
20769459 GAAAGAATATTTAAGCCACTCGCCTTATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTAC
258 GAAAGAAGATATAAGCCACTAGCCTTATCTCCCTCGTAAGGAGTGGAATAGGTTGAAGATTGTAA
* *
20769524 GTCATATATCCCTGGTCAGCAGTGAAATAGGT
323 GTCATATATCCCTAGTCAACAGTGAAATAGGT
20769556 GAATCCTATC
Statistics
Matches: 313, Mismatches: 38, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
386 308 0.98
387 5 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (386 bp):
AGTGGAATAGATTGAAGACTGTAAGTCAAATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTAT
CTCCCTGGTCAGCAGTGCAATAGGTTGAAGATTATGATTCCTATCTCCCTGGTCAGCAATGTAAT
AGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGATCCT
ATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGAA
AGAAGATATAAGCCACTAGCCTTATCTCCCTCGTAAGGAGTGGAATAGGTTGAAGATTGTAAGTC
ATATATCCCTAGTCAACAGTGAAATAGGTTGACGATTATGAGTCCTATCTCCCTAGTTAAC
Found at i:20769631 original size:78 final size:78
Alignment explanation
Indices: 20769484--20769633 Score: 194
Period size: 78 Copynumber: 1.9 Consensus size: 78
20769474 CCACTCGCCT
* *
20769484 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACGTCATATATCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACATCATATATCCCTGGTCAGCAATGA
20769549 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * * * *
20769562 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGA-ATCCTATCTCTCTGGTCAGTAATG
1 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGT-ACATCATATATCCCTGGTCAGCAATG
*
20769626 TAATAGGT
65 AAATAGGT
20769634 TGTTGATTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
78 60 0.98
79 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (78 bp):
TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACATCATATATCCCTGGTCAGCAATGA
AATAGGTGAATCC
Found at i:20769911 original size:78 final size:78
Alignment explanation
Indices: 20769782--20769925 Score: 211
Period size: 78 Copynumber: 1.8 Consensus size: 78
20769772 CCACTAGCCT
* * * *
20769782 TATCTCCCTGGTCGGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT-AGTCAGCAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTAAGTCCAATCTCCCTGAG-CAGCAGTG
20769846 GAATAGGTGAATCA
65 GAATAGGTGAATCA
*
20769860 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTGAA-TCCAATCTCCCTGAGCAGTAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGT-AAGTCCAATCTCCCTGAGCAGCAGTG
20769924 GA
65 GA
20769926 GAAGGTTGCA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
78 55 0.93
79 4 0.07
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (78 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGTAAGTCCAATCTCCCTGAGCAGCAGTGG
AATAGGTGAATCA
Found at i:20770429 original size:78 final size:78
Alignment explanation
Indices: 20770300--20770449 Score: 221
Period size: 78 Copynumber: 1.9 Consensus size: 78
20770290 CCACTAGCCT
* * * *
20770300 TATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTGAAGTCATATCTCCCTGGTCAGCAGCGA
20770365 AATAGGTGAATCC
66 AATAGGTGAATCC
* *
20770378 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-TGAAGTCATATCTCCCTGGTCAGCAGCG
*
20770442 TAATAGGT
65 AAATAGGT
20770450 TGAAGATTGT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
78 61 0.95
79 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTGAAGTCATATCTCCCTGGTCAGCAGCGA
AATAGGTGAATCC
Found at i:20770792 original size:386 final size:386
Alignment explanation
Indices: 20770300--20771055 Score: 1088
Period size: 386 Copynumber: 2.0 Consensus size: 386
20770290 CCACTAGCCT
* ** * * *
20770300 TATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGTAAGTCATAACTCCCTGGTCTGCAGTGA
** *
20770365 AATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
66 AATAGGTGAATCCTATCTCCCAGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
* *
20770430 TGGTCAGC-AGCGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
131 TGGTCAGCAAGAG-AATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGT
* * *
20770494 TGAAAATTATAAATCCTATCTCCCTAAGCAGAAGTGGAGCAGATCGAAGATGGCGATTCTTATCT
195 TGAAAATTATAAATCCTATCTCCCAAAGCAGAAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
* * * * * *
20770559 TTCCAATGTAGTAGGCAAGCAGATATAAGCCACTAGGCTTATCTCCCTGGTCAGTAGTGGAATAG
260 TCCCAAGGTAGTAGGAAAGAAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGGAGTGGAATAG
* *
20770624 GCTGAAGATTGTAAGTC-GA-ATCTCCTCGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCC
325 GCTGAAGATTGTAAGTCATATATC-CCT-GGTCAGCAGTGAAATAGGTTGACGATTGTGAGTCC
* *
20770686 TATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGTATGTCCA-AACTCCTTGGTCTGCAGTG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGTAAGT-CATAACTCCCTGGTCTGCAGTG
* * * * *
20770750 CAATTGGTGAATTCTATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
65 AAATAGGTGAATCCTATCTCCCAGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCC
*
20770815 CTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGT
130 CTGGTCAGCAAGAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGT
** * * *
20770880 TGAAAATTATCGATCTTATCTCCCAAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCT
195 TGAAAATTATAAATCCTATCTCCCAAAGCAGAAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
* * *
20770945 TCCCAAGGTAGTAGGAAAGAATATTTAAGCCACTCGCCTTATCTCCCTGGTCAGGAGTGGAATAG
260 TCCCAAGGTAGTAGGAAAGAAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGGAGTGGAATAG
* *
20771010 GTTGAAGATTGTACGTCATATATCCCTGGTCAGCAGTGAAATAGGT
325 GCTGAAGATTGTAAGTCATATATCCCTGGTCAGCAGTGAAATAGGT
20771056 GAATCCTATC
Statistics
Matches: 326, Mismatches: 40, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
386 315 0.97
387 8 0.02
388 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (386 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATTGTAAGTCATAACTCCCTGGTCTGCAGTGA
AATAGGTGAATCCTATCTCCCAGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
TGGTCAGCAAGAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTT
GAAAATTATAAATCCTATCTCCCAAAGCAGAAGTGGAGCAGATCGAAGACGGCGAATCTTATCTT
CCCAAGGTAGTAGGAAAGAAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGGAGTGGAATAGG
CTGAAGATTGTAAGTCATATATCCCTGGTCAGCAGTGAAATAGGTTGACGATTGTGAGTCC
Found at i:20771131 original size:78 final size:78
Alignment explanation
Indices: 20770984--20771133 Score: 194
Period size: 78 Copynumber: 1.9 Consensus size: 78
20770974 CCACTCGCCT
* *
20770984 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACGTCATATATCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACATCATATATCCCTGGTCAGCAATGA
20771049 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * * * *
20771062 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGA-ATCCTATCTCTCTGGTCAGTAATG
1 TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGT-ACATCATATATCCCTGGTCAGCAATG
*
20771126 TAATAGGT
65 AAATAGGT
20771134 TGTTGATTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
78 60 0.98
79 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (78 bp):
TATCTCCCTGGTCAGGAGTGGAATAGGTTGAAGATTGTACATCATATATCCCTGGTCAGCAATGA
AATAGGTGAATCC
Found at i:20772601 original size:298 final size:297
Alignment explanation
Indices: 20772228--20773195 Score: 1142
Period size: 298 Copynumber: 3.2 Consensus size: 297
20772218 GATTGTGAGT
* ** * *
20772228 CTTATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTACA-ATCTCCCTGGTCAGCAG
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGT-CATATCTCCCTGGTCAGCAG
*
20772292 TGGAATAGGTGAATCATATCTTCCTGGTCAGAGGTGGACTTGGTTGAAGAGTGTGAATCCTATCT
65 TGGAATAGGTGAATCATATCTTCCT-GTCAGAGGTGGACTTGGTTGAAGAGTATGAATCCTATCT
* * * * * *
20772357 CCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATGTCCTTGAGTAGCAGTGGAGTAG
129 CCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAG
* * * * * *
20772422 GTTGAAAATTAGAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAAGGCGAATCTTAC
194 GTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTAT
20772487 CTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
259 CTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
*
20772526 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGT
* * * * * *
20772591 -GAATTAGGTGAATCCTATCTCCCTTGTCAGTA-CTGGAATAGGTTGAAGATTATGAATCCTATC
66 GGAA-TAGGTGAATCATATCTTCC-TGTCAG-AGGTGGACTTGGTTGAAGAGTATGAATCCTATC
* * * * *
20772654 TCCCTGGTCAGCGGTGTAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGTAGTGGAGTA
128 TCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTA
* * * *
20772719 GGTTGAAAATTACAGATCTTAACTCTCTAAGTAGTAGTAGAGCAGATCGAAGACGGAGATTCTTA
193 GGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTA
* * * * *
20772784 TATTCCCAAGCTGGTAGGGAAGCAGATTTGAGCCACTAGC
258 TCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * * * *
20772824 CTTATCTCCCTGGTCAGTAATGGAACAGGTTAAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGT
** * * *** ** * * * *
20772889 GGAATAGGTTGAAGATTGTGAGTCTT-ATCTCCCTGGTCAACAAT-G--GAATAG-CTGAATCTT
66 GGAATAGG-TG-A-ATCAT-A-TCTTCCTGTCAGAGGTGGAC-TTGGTTGAAGAGTATGAATCCT
* *
20772949 ATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGA
125 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGA
* * * *
20773014 GAAGGTTAAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAATACGGCGATTC
190 GTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTC
* *
20773079 TTATCTTCTCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGC
255 TTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * * * *
20773122 CTTATCTCCCCGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTGTCTCCCTAGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGT
*
20773187 GGTATAGGT
66 GGAATAGGT
20773196 TGAAGATTCT
Statistics
Matches: 564, Mismatches: 94, Indels: 25
0.83 0.14 0.04
Matches are distributed among these distances:
297 6 0.01
298 533 0.95
299 11 0.02
300 1 0.00
301 9 0.02
302 1 0.00
303 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (297 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGT
GGAATAGGTGAATCATATCTTCCTGTCAGAGGTGGACTTGGTTGAAGAGTATGAATCCTATCTCC
CTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCT
TCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
Found at i:20772695 original size:342 final size:340
Alignment explanation
Indices: 20771932--20774296 Score: 1331
Period size: 342 Copynumber: 6.9 Consensus size: 340
20771922 TATCTTCATT
* * * * * * * *
20771932 GTCAGTAGCGGAATAGGTTGACGATTGT-AAGTCCTATCTCTCTAGTCAGTAGTAGAATAGGCTG
1 GTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTG
* * * * ***
20771996 AAAATTGTGAATCCTATATCCCTGAGCAGCAATGGAGTAGGTTGCAAATTATAAATCTTATCTCC
65 AAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTGCGAATCTTATCTCC
* * * * * * * * * * **
20772061 TTAAGCAGTAGTAGAGCAGATCGAAGATGGCGATTCTTATCTTCCCAGGGTAGTAG-GGAAATAG
130 TTAAGTAGCAGTGGAGCAGGTTGAAAATTGAGA-TCTTATC-TCCCAAGGCAGTAGTGG-AGCAG
* * ** * * * * ** **
20772125 ATTTAAGCCA-CTAGCCTTATCTCCCTGGTCAGTAGTAGAATAGGTGGAAGATTGTAAGTCCTAT
192 ATTGAAG-AAGCTAATCTTATCTCCCAGGTCAGTAG-GGAAAAGATTTAAGATACTAAGTCCTAT
* * * * * *
20772189 CCCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCTTATCTCTCTGGTCAACAGTGGAAT
255 CTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGG-A-
* * *
20772254 AGTTTGAAGATTGTAAGTACAATCTCCCTG
318 A--TT--AG-GTG-AA-TCCTATCTCCCTG
* * * *
20772284 GTCAGCAGTGGAATAGG-TG-A-ATCAT--AT-C--T-T-CCTGGTCAG-AGGTGGACTTGGTTG
1 GTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCA-GTGGAATAGGTTG
* * * * * * *
20772338 AAGAGTGTGAATCCTATCTCCCTG-GTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATGTC
65 AAGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTGCGAATCTTATCTC
* * *
20772402 CTTGAGTAGCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGA
129 CTTAAGTAGCAGTGGAGCAGGTTGAAAATT-GAGATCTTATCTCCCAAGGCAGTAGTGGAGCAGA
* * * **
20772467 TCGAAGAAGGCGAATCTTACCTTCCCAAGGT-AGTAGGGAAGAAGATTTAAGCCACT-AG-CCTT
193 TTGAAGAA-GCTAATCTTATC-TCCC-AGGTCAGTAGGGAA-AAGATTTAAGATACTAAGTCC-T
* * *
20772529 ATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGT-GA
253 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGGA
*
20772593 ATTAGGTGAATCCTATCTCCCTT
318 ATTAGGTGAATCCTATCTCCCTG
* * * *
20772616 GTCAGTACTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCGGTGTAATAGGTTGT
1 GTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGA
* * * *
20772681 AGATTGTAAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTAC-AGATCTTAACT-C
66 AGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTGCGA-ATCTTATCTCC
* * * * * ** * *
20772744 TCTAAGTAGTAGTAGAGCAGATCGAAGACGGAGATTCTTATATTCCCAA-GCTGGTAG-GGAAGC
130 T-TAAGTAGCAGTGGAGCAGGTTGAAAATTGAGA-TCTTAT-CTCCCAAGGC-AGTAGTGG-AGC
* ** * * * * * *
20772807 AGATTTG-AGCCA-CTAGCCTTATCTCCCTGGTCAGTAATGGAACAGGTTAAAGGTTA-TAAGTC
190 AGA-TTGAAG-AAGCTAATCTTATCTCCCAGGTCAGT-AGGGAAAAGATTTAA-GATACTAAGTC
* * * *
20772869 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCTTATCTCCCTGGTCAACAATG
251 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTG
* *
20772934 GAA-TAGCTGAATCTTATCTCCCTG
316 GAATTAGGTGAATCCTATCTCCCTG
* *
20772958 GTCAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAGA-AGGTT
1 GTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTG-GTCAGCAGTGGA-ATAGGTT
* * ** * * * * * * * * * ** *
20773021 AAAAATT-ACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAATACGGCGATTCTTATCT
64 GAAGATTGTGA-ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTGCGAATCTTATCT
* * * * * * * * *
20773085 TCTCAAGGTAGCAG-GGAAGAAGATTTAAGCCACT-AG-CCTTATCTCCC-CGGTCAGTAGTGGA
128 CCTTAA-GTAGCAGTGG-AGCAGGTTGAA--AATTGAGATCTTATCTCCCAAGG-CAGTAGTGGA
** * * * * * * * * * * *
20773146 ATAGGTTGAAGATTG-TAAGTCCTGTCTCCCTA-GTCAGCAGTGGTATAGGTTGAAGATTCTGAG
188 GCAGATTGAAGA-AGCTAA-TCTTATCTCCC-AGGTCAGTAG-GGAAAAGATTTAAGATACTAAG
* * * * *
20773209 TCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAG
249 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAG
*
20773274 TGGAA-TAGGTGAATCCGATCTCCCTG
314 TGGAATTAGGTGAATCCTATCTCCCTG
* * * * *
20773300 GTGAGCAGTAGAATAGGTTGAAGATTATGAATCCTATCTCCATGGTCAGCAATGGAATAGGTTGA
1 GTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGA
* * *
20773365 AGATTGTGAATCCTATGTCCCTGAGCACCAGTGGAGTAGGTTGAAAATTAC-AGATCTTATCTCC
66 AGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTGCGA-ATCTTATCTCC
** * * * * ** * *
20773429 CAAAGCAGTAGTGGAACA-GATGAAGACGGTGA-ATCTTATCTTCCCAAGGTAGTAG-GGAAGAA
130 TTAAGTAGCAGTGGAGCAGGTTGAA-A-ATTGAGATCTTATC-TCCCAAGGCAGTAGTGG-AGCA
** * ** * * **
20773491 GATTTCAGCCA-CTAGCCTTATCTCCCTGGTCAGTAGTGG-AATGATTTGAAGATTGTAAGTCCT
191 GATTGAAG-AAGCTAATCTTATCTCCCAGGTCAGTAG-GGAAAAGATTT-AAGATACTAAGTCCT
* * * * * * * *
20773554 ATC-CCCTAGTCAGCAGTGGAATAGATTGAGGATTCTGAGTCCTATATCCCTGGTCA-CTGGTGG
253 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGC-AGTGG
*
20773617 AATAGGTTCAAGATGGTAAGTCCTATCTCCCTG
317 -A-A--TT--AGGT-G-AA-TCCTATCTCCCTG
* * *
20773650 GTCAGCAGTGGAATA----G--G----TGAATCCTATCTCCCTGGTCACCAGTAGAATAGGTTGA
1 GTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGA
** * * * * *
20773705 AGATTGTGAATCCTATCTCCCTG-GACAGCAACGGAATAGGTTGAAGATTGTGAATCCTATGTTC
66 AGATTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTGCGAATCTTAT-CTC
* * * *
20773769 C-TGAGCAGCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCTCCCAAGGCAGTAGTGGAGCAAA
129 CTTAAGTAGCAGTGGAGCAGGTTGAAAATT-GAGATCTTATCTCCCAAGGCAGTAGTGGAGCAGA
* * * * * ***
20773833 TCGAAGACGGCGAATCTTACCTTCCCAAGGT-AGTAGGAAAGAAGATTTAACCCACT-AG-CCTT
193 TTGAAGA-AGCTAATCTTATC-TCCC-AGGTCAGTAGGGAA-AAGATTTAAGATACTAAGTCC-T
* * * **
20773895 ATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGCAGTCAA
253 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGGA
*
20773960 ATTA-GTGAATCCTATCTCCCTT
318 ATTAGGTGAATCCTATCTCCCTG
* * * *
20773982 GTCAGTAGTGGAATATGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGTAGTGTAATAGGTTGA
1 GTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGA
* *
20774047 AGATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTAC-AGATCTTATCT-C
66 AGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTGCGA-ATCTTATCTCC
** * * * * ** * * *
20774110 TCTAAGTAGTTGTAGAGCAGATCGAAGACGGCGATTCTTATATTCCCAA-GCTGGTAG-GGAAGC
130 T-TAAGTAGCAGTGGAGCAGGTTGAAAATTGAGA-TCTTAT-CTCCCAAGGC-AGTAGTGG-AGC
* ** ** ** * * * *
20774173 AGATTTG-AGTCA-CTAGCCTTATCTCCCTCGTCAGTAATTGAACAGGTTGAAGGTTA-TAAGTC
190 AGA-TTGAAG-AAGCTAATCTTATCTCCCAGGTCAGT-AGGGAAAAGATTTAA-GATACTAAGTC
*
20774235 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCA
251 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCATATCTCCCTGGTCAGCA
20774297 ATAGAATAGG
Statistics
Matches: 1522, Mismatches: 368, Indels: 256
0.71 0.17 0.12
Matches are distributed among these distances:
332 51 0.03
333 6 0.00
334 4 0.00
335 7 0.00
336 2 0.00
337 4 0.00
338 4 0.00
339 4 0.00
340 187 0.12
341 173 0.11
342 912 0.60
343 98 0.06
344 12 0.01
345 3 0.00
346 2 0.00
347 4 0.00
348 2 0.00
349 5 0.00
350 25 0.02
351 2 0.00
352 15 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (340 bp):
GTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGA
AGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTGCGAATCTTATCTCCT
TAAGTAGCAGTGGAGCAGGTTGAAAATTGAGATCTTATCTCCCAAGGCAGTAGTGGAGCAGATTG
AAGAAGCTAATCTTATCTCCCAGGTCAGTAGGGAAAAGATTTAAGATACTAAGTCCTATCTCCCT
GGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGGAATTAGGTG
AATCCTATCTCCCTG
Found at i:20772725 original size:386 final size:381
Alignment explanation
Indices: 20771932--20772677 Score: 916
Period size: 386 Copynumber: 2.0 Consensus size: 381
20771922 TATCTTCATT
* * * * * *
20771932 GTCAGTAGCGGAATAGGTTGACGATTGTAAGTCCTATCTCTCTAGTCAGTAGTAGAATAGGCTGA
1 GTCAGTAGTGGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTAGTCAGCAATAGAATAGGCTGA
* * * * *
20771997 AAATTGTGAATCCTATATCCCTGAGCAGCAATGGAGTAGGTTGCAAATTATAAATCTTATCTCCT
66 AAACTGCGAATCCTATATCCCTGAGCAGCAATGGAGTAGGTTGAAAATTAGAAATCTTATCTCCC
* * * * *
20772062 TAAGCAGTAGTAGAGCAGATCGAAGATGGCGATTCTTATCTTCCCAGGGTAGTAGGGAAATAGAT
131 AAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAATAGAT
* * *
20772127 TTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTAGAATAGGTGGAAGATTGTAAGTCCTATCCC
196 TTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTAGAATAGGTGGAAGACTATAAGTCATATCCC
* * * * *
20772192 CCTGGTCAGCAGTGGGATAGGTTGAAGATTGTGAGTCTTATCTCTCTGGTCAACAGTGGAATAGT
261 CCTGGTCAGCAGT-GGATA-GTT-AAG--TGTGAATCCTATCTCCCTGGTCAACACTGGAATAGG
* *
20772257 TTGAAGATTGTAAGTACAATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTTCCTG
321 TTGAAGATTATAAGTACAATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCCCTG
* * * * *
20772318 GTCAG-AGGTGGACTTGGTTGAAGAGTGTGAA-TCCTATCTCCCTGGTCAGCAATGGAATAGGTT
1 GTCAGTA-GTGGAATAGGTTGAAGAGTGT-AAGTCCTATCTCCCTAGTCAGCAATAGAATAGGCT
* * * * * *
20772381 GAAGACTGCGAATCCTATGTCCTTGAGTAGCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCTC
64 GAAAACTGCGAATCCTATATCCCTGAGCAGCAATGGAGTAGGTTGAAAATTAGAAATCTTATCTC
*
20772446 CCAAAGCAGTAGTGGAGCAGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGA-A
129 CCAAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGTAGGGAA-ATA
* *
20772510 GATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATAAGTCATAT
193 GATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTAGAATAGGTGGAAGACTATAAGTCATAT
* * **
20772575 CTCCCTGGTCAGCAGT-GA-A-TT-AG-GTGAATCCTATCTCCCTTGTCAGTACTGGAATAGGTT
258 CCCCCTGGTCAGCAGTGGATAGTTAAGTGTGAATCCTATCTCCCTGGTCAACACTGGAATAGGTT
* * * *
20772635 GAAGATTATGAA-TCCTATCTCCCTGGTCAGCGGTGTAATAGGT
323 GAAGATTAT-AAGTACAATCTCCCTGGTCAGCAGTGGAATAGGT
20772678 TGTAGATTGT
Statistics
Matches: 309, Mismatches: 47, Indels: 18
0.83 0.13 0.05
Matches are distributed among these distances:
376 64 0.21
377 2 0.01
379 2 0.01
381 2 0.01
383 1 0.00
384 2 0.01
385 1 0.00
386 232 0.75
387 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (381 bp):
GTCAGTAGTGGAATAGGTTGAAGAGTGTAAGTCCTATCTCCCTAGTCAGCAATAGAATAGGCTGA
AAACTGCGAATCCTATATCCCTGAGCAGCAATGGAGTAGGTTGAAAATTAGAAATCTTATCTCCC
AAAGCAGTAGTAGAGCAGATCGAAGAAGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAATAGAT
TTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTAGAATAGGTGGAAGACTATAAGTCATATCCC
CCTGGTCAGCAGTGGATAGTTAAGTGTGAATCCTATCTCCCTGGTCAACACTGGAATAGGTTGAA
GATTATAAGTACAATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATATCTCCCTG
Found at i:20773288 original size:298 final size:297
Alignment explanation
Indices: 20772228--20773326 Score: 1018
Period size: 298 Copynumber: 3.7 Consensus size: 297
20772218 GATTGTGAGT
* ** * * * *
20772228 CTTATCTCTCTGGTCAACAGTGGAATAGTTTGAAGATTGTAAGTACAATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGT
* * * ** * * * *
20772293 GGA-A---T--AG---GTGAATCATATCTTCCTGGTCAGA-GGTGGACTTGGTTGAAGAGTGTGA
66 GGATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCA-ACAATGGAATAGGTCGAAGATTGT-A
* * * *
20772348 ATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATGTCCTTGAGTAGCA
129 ATCCTATCTCCCTGGTCAGCAGTGGAATA-G-T---G--T--GAATCCTATCTCCCTGAGCAGCA
* ** * *
20772413 GTGGAGTAGGTTGAAAATTAGAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAAGGC
185 GTGGAGTAGGTTGAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAAGACGGC
* *
20772478 GAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
250 GATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* *
20772526 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGACTATAAGTCATATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGT
* * ** * * *
20772591 -GA-A--TT--AG---GTGAATCCTATCTCCCTTGTCAGTACTGGAATAGGTTGAAGATTATGAA
66 GGATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAATGGAATAGGTCGAAGATTGT-AA
* * *
20772647 TCCTATCTCCCTGGTCAGCGGTGTAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGTAG
130 TCCTATCTCCCTGGTCAGCAGTGGAATA----GT-G--TG--AATCCTATCTCCCTGAGCAGCAG
* * *
20772712 TGGAGTAGGTTGAAAATTACAGATCTTAACT-CTCTAAGTAGTAGTAGAGCAGATCGAAGACGGA
186 TGGAGTAGGTTGAAAATTACAGATCTTATCTCCT-TAAGCAGTAGTAGAGCAGATCGAAGACGGC
* * * * *
20772776 GATTCTTATATTCCCAAGCTGGTAGGGAAGCAGATTTGAGCCACTAGC
250 GATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * * *
20772824 CTTATCTCCCTGGTCAGTAATGGAACAGGTTAAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGT
*
20772889 GGAATAGGTTGAAGATTGTGAGTCTTATCTCCCTGGTCAACAATGGAATA-G-C------TG-AA
66 GG-ATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAATGGAATAGGTCGAAGATTGTAA
* *
20772945 TCTTATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGCAGCAG
130 TCCTATCTCCCTGGTCAGCAGTGG-A-A---T--AG--TGTGAATCCTATCTCCCTGAGCAGCAG
* * *
20773010 TGGAGAAGGTTAAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAATACGGCG
186 TGGAGTAGGTTGAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAAGACGGCG
* *
20773075 ATTCTTATCTTCTCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGC
251 ATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * * *
20773122 CTTATCTCCCCGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTGTCTCCCTAGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGT
* * * *
20773187 GGTATAGGTTGAAGATTCTGAGTCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATTGTAA
66 GG-ATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAATGGAATAGGTCGAAGATTGTAA
* * * *
20773252 GTCCTATCTCCCTGGTCAGCAGTGGAATAG-GTGAATCCGATCTCCCTG-GTGAGCAGTAGAATA
130 -TCCTATCTCCCTGGTCAGCAGTGGAATAGTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAGTA
*
20773315 GGTTGAAGATTA
193 GGTTGAAAATTA
20773327 TGAATCCTAT
Statistics
Matches: 664, Mismatches: 98, Indels: 78
0.79 0.12 0.09
Matches are distributed among these distances:
296 1 0.00
297 5 0.01
298 576 0.87
299 5 0.01
300 7 0.01
301 5 0.01
302 1 0.00
303 5 0.01
305 3 0.00
306 3 0.00
307 4 0.01
308 49 0.07
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (297 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGT
GGATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAATGGAATAGGTCGAAGATTGTAAT
CCTATCTCCCTGGTCAGCAGTGGAATAGTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
TGAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCT
TCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
Found at i:20773387 original size:122 final size:123
Alignment explanation
Indices: 20773162--20773794 Score: 360
Period size: 122 Copynumber: 5.0 Consensus size: 123
20773152 TGAAGATTGT
* * *
20773162 AAGTCCTG-TCTCCCTAGTCAGCAGTGGTATAGGTTGAAGATTCTGAGTCCTATCACCCA-GGTC
1 AAGTCC-GATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAATCCTATC-TCCATGGTC
* * *
20773225 AACAGTGGAATAGGTCGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTG-
64 AGCAATGGAATAGGTTGAAGATTGTAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGA
* * * *
20773285 AA-TCCGATCTCCCTGGTGAGCAGTAGAATAGGTTGAAGATTATGAATCCTATCTCCATGGTCAG
1 AAGTCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCATGGTCAG
* * *
20773349 CAATGGAATAGGTTGAAGATTGTGAATCCTATGTCCCTGAG-CACCAGTGGAGTAGGTTGAAAA
66 CAATGGAATAGGTTGAAGATTGT-AATCCTATCTCCCTG-GTCAGCAGTGGAATAGG-TG---A
** * * * * *** *
20773412 TTACAGATCTTATCTCCCAAAG-CAGTAGTGGAACA-GATGAAGACGGTGAATCTTATCTTCCCA
1 --A-AG-TCCGATCTCCC-TAGTCAGCAGTGGAATAGGTTGAAGATTCTGAATCCTATC-T-CCA
* * * * * ** **** * *
20773475 AGGT-AG-TAGGGAAGAAGATTTCAGCCACT-AGCCTTATCTCCCTGGTCAGTAGTGGAATGATT
59 TGGTCAGCAATGGAA-TAGGTTGAAGATTGTAATCC-TATCTCCCTGGTCAGCAGTGGAAT-A--
*
20773537 TGAAGATTGT
119 -G--G--TGA
* * * * * *
20773547 AAGTCCTATC-CCCTAGTCAGCAGTGGAATAGATTGAGGATTCTGAGTCCTATATCCCTGGTCA-
1 AAGTCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCATGGTCAG
** * *
20773610 CTGGTGGAATAGGTTCAAGATGGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTG-
66 C-AATGGAATAGGTTGAAGATTGTAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGA
* * * * * * *
20773669 AA-TCCTATCTCCCTGGTCACCAGTAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGACAG
1 AAGTCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCATGGTCAG
* * * *
20773733 CAACGGAATAGGTTGAAGATTGTGAATCCTATGTTCCTGAG-CAGCAGTGGAGTAGGTTGA
66 CAATGGAATAGGTTGAAGATTGT-AATCCTATCTCCCTG-GTCAGCAGTGGAATAGG-TGA
20773793 AA
1 AA
20773795 ATTAGAGATC
Statistics
Matches: 382, Mismatches: 88, Indels: 79
0.70 0.16 0.14
Matches are distributed among these distances:
121 11 0.03
122 182 0.48
123 15 0.04
124 2 0.01
125 1 0.00
127 1 0.00
129 8 0.02
130 29 0.08
131 87 0.23
132 33 0.09
133 8 0.02
135 1 0.00
137 1 0.00
138 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (123 bp):
AAGTCCGATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCATGGTCAG
CAATGGAATAGGTTGAAGATTGTAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTGA
Found at i:20773675 original size:34 final size:34
Alignment explanation
Indices: 20773637--20773701 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
20773627 AGATGGTAAG
* *
20773637 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
1 TCCTATCTCCCTGGTCACCAGTAGAATAGGTGAA
20773671 TCCTATCTCCCTGGTCACCAGTAGAATAGGT
1 TCCTATCTCCCTGGTCACCAGTAGAATAGGT
20773702 TGAAGATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTGGTCACCAGTAGAATAGGTGAA
Found at i:20773681 original size:384 final size:386
Alignment explanation
Indices: 20772941--20777024 Score: 1587
Period size: 386 Copynumber: 10.6 Consensus size: 386
20772931 ATGGAATAGC
* * * * *
20772941 TGAATCTTATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGCA
1 TGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTCCCTGAGCA
* * ** * *
20773006 GCAGTGGAGAAGGTTAAAAATTACAGATCTTATCTCCTTAAGCAGTAGTAGAGCAGATCGAATAC
66 GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAC
* * * *
20773071 GGCGATTCTTATCTTCTCAAGGTAGCAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCCGGT
131 GGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGT
* * *
20773136 CAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTGTCTCCCTAGTCAGCAGTGGTATAGGTTGAAG
196 CAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGATTGAAG
*
20773201 ATTCTGAGTCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATTGTAAGTCCTATCTCCCTG
261 ATTCTGAGTCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATGGTAAGTCCTATCTCCCTG
* *
20773266 GTCAGCAGTGGAATAGGTGAATCCGATCTCCCTGGTGAGCAGTAGAATAGGTTGAAGATTA
326 GTCAGCAGTGGAATAGGTGAATCCGATCTCCCTGGTCACCAGTAGAATAGGTTGAAGATTA
*
20773327 TGAATCCTATCTCCATGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTCCCTGAGCA
1 TGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTCCCTGAGCA
* *
20773392 CCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAACAGAT-GAAGAC
66 GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAC
* *
20773456 GGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTCAGCCACTAGCCTTATCTCCCTGGT
131 GGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGT
* *
20773521 CAGTAGTGGAAT-GATTTGAAGATTGTAAGTCCTATC-CCCTAGTCAGCAGTGGAATAGATTGAG
196 CAGTAGTGGAATAG-GTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGATTGAA
* *
20773584 GATTCTGAGTCCTAT-ATCCCTGGTC-ACTGGTGGAATAGGTTC-AAGATGGTAAGTCCTATCTC
260 GATTCTGAGTCCTATCA-CCCAGGTCAAC-AGTGGAATAGG-TCGAAGATGGTAAGTCCTATCTC
* *
20773646 CCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCACCAGTAGAATAGGTTGAAGATTG
322 CCTGGTCAGCAGTGGAATAGGTGAATCCGATCTCCCTGGTCACCAGTAGAATAGGTTGAAGATTA
* * *
20773711 TGAATCCTATCTCCCTGGACAGCAACGGAATAGGTTGAAGATTGTGAATCCTATGTTCCTGAGCA
1 TGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTCCCTGAGCA
* * *
20773776 GCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCTCCCAAGGCAGTAGTGGAGCAAATCGAAGAC
66 GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAC
* * *
20773841 GGCGAATCTTACCTTCCCAAGGTAGTAGGAAAGAAGATTTAACCCACTAGCCTTATCTCCCTGGT
131 GGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGT
* * ** *
20773906 CAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGCAGT--CA-A-ATT--AG
196 CAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGATTGAAG
* * ** ** * * *
20773965 ----TGAATCCTATCTCCCTTGTCAGTAGTGGAATATGTTGAAGATTGTGAA-TCCTATCTCCCT
261 ATTCTGAGTCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATGGT-AAGTCCTATCTCCCT
* * * ** * *
20774025 GGTCAGTAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGTAGTGGAGTAGGTT
325 GGTCAGCAGTG-GA-A---T--AG---GTGAATCCGATCTCCCTG-GTCACCAGTAGAATAGGTT
*
20774089 GAAAATTA
379 GAAGATTA
* * * * *** * ** * * ** * * * * *
20774097 -CAGATCTTATCTCTCTAAGT-AGTTGTAGAGCAGATCGAAGACGGCGATTCTTATATTCCC-AA
1 TGA-ATCCTATCTCCCT-GGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTAT-GTCCCTGA
* * * * * * * ** * * * *
20774159 GCTGGTAG-GGAAGCAGATTTG--AGTCACTAG-CCTTATCTCCC-TCGTCAGTAATTGAACAGG
63 GC-AGCAGTGG-AGTAG-GTTGAAAATTAC-AGATCTTATCTCCCAAAG-CAGTAGTGGAGCAGA
* *** * * * * * * **** *
20774219 TTGAAG--GTTATAAGTCCTATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTGAATC
123 TCGAAGACG-GCGAA-TCTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT--AGC
* * * *
20774279 C-TATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAG-CAGCG
182 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCT-AGTCAGCA
* * * * * * * ** ** * *
20774341 GTGGAGTAGGTTGAAAATTACAGA-TCTTATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGACG
245 GTGGAATAGATTGAAGATT-CTGAGTCCTATCACCC-AGGTCAACAGTGGAATAGGTCGAAGATG
* * * * * * * *
20774404 GCGAA-TCTTATCTTCCCAAGAT-AGTAG-GGAATAAGATTTAAGCCACTAGCCTTATCTCCCTG
308 G-TAAGTCCTATC-TCCC-TGGTCAGCAGTGGAAT-AG--GT--G--A--ATCC-GATCTCCCTG
** * * *
20774466 GTCAGTAGTGGAATAGGTTGAAAATTG
360 GTCACCAGTAGAATAGGTTGAAGATTA
** * * * * * *
20774493 T-AAGTCGAATCTCACC-GATCAGCAGTGGAATATGTTGACGATTGTGAGTCCTATCTCCCTG-G
1 TGAA-TCCTATCTC-CCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTCCCTGAG
* * * * ** ****
20774555 TCAACATTGGAATAGGTTGAAGATTGTAC-G-TCCAATCT-CGTTGGTCAGTAGT-G-G-A-AT-
64 -CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCTTATCTCCCAAAG-CAGTAGTGGAGCAGATC
* * * * * * * **** *
20774612 ----A-GGTGAATCCTATC-TCCC-TGGTTAGCAGAGGAA-TAGGTTGAAGATTGTGAATCC-TA
125 GAAGACGGCGAATCTTATCTTCCCAAGG-TAGTAG-GGAAGAAGATTTAAGCCACT--AGCCTTA
* * * * *
20774668 TCTCCCTGGTCAGCAATAGAATAGATTGAAGATTGTGAA-TCCTATCTCCCT-GACCAGCAGTGG
186 TCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTAG-TCAGCAGTGG
* * * * * * * ** ** * * * *
20774731 AGTAGGTTGAAAATTAT-AGATCTTATCTCCCAAAG-CAGTAGTGGAGCAGATTGAAGACGGCGA
249 AATAGATTGAAGATTCTGAG-TCCTATCACCC-AGGTCAACAGTGGAATAGGTCGAAGATGG-TA
* * * * * * *
20774794 ATGT--TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACTCGCCTTATCTCCGTGGTC
311 A-GTCCTATC-TCCC-TGGTCAGCAGTGGAA-TAG--GT--G--AAT--CC-GATCTCCCTGGTC
** ** *
20774855 AGTAGGGGAATAGGTTGAATA-T-
363 ACCAGTAGAATAGGTTGAAGATTA
* * * *
20774877 TGCAAGTCATATCTCCCTGGTCAGCAGT-G---A-GAT--AG---GTGAATCCTATCTCCCTTG-
1 TG-AA-TCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTCCC-TGA
* * * * ** * * ** * * ** * *
20774931 TCAGTAGTGGAATAGGTTGAATATT-GTGAATCCTATCTCTC-TGGTGAGTAGTGTAATAGGTTG
63 GCAGCAGTGGAGTAGGTTGAAAATTACAG-ATCTTATCTCCCAAAG-CAGTAGTGGAGCAGATCG
* ** ** * * * * * * * * *** ** *
20774994 TAGATTGTAAATCCTATC-TCCC-TGAGCAGCAGTGTAGTAGGTTTAAAATAAC-AGATATTAAC
126 AAGACGGCGAATCTTATCTTCCCAAG-GTAGTAGGGAAGAAGATTT-AAGCCACTAG-CCTTATC
* * * ** * * ** ** * * * * * *
20775056 TCTCTAAGT-AGTAGTAGAGCAGATCGAAGACAGCGACTCTTATAGTCCCAAG-CTGGTAG-GGA
188 TCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTAT-CTCCCTAGTC-AGCAGTGGA
* *** * * ** * * * * **
20775118 AGCAGATTTG-AGCCACT-AG-CCTTATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAA
250 A-TAGA-TTGAAGATTCTGAGTCC-TATCACCCAGGTCAACAGTGGAATAGGTCGAAGATGGTAA
** ** * * *
20775180 GTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCT-TAT-CTC-CCTCGT-C
312 GTCCTATCTCCCTGGTCAGCAGTGGAATAGG-TG-A-A-TCCGA-TCTCCCTGGTCACC-AGTAG
* ** **
20775241 AACA-GTTGACTA-GG
371 AATAGGTTGAAGATTA
* * * *
20775255 TGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCA
1 TGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTCCCTGAGCA
* * * * *
20775320 GTAGTGGAGAAGGTTGAAAATTCCAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGAC
66 GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAC
* * *
20775385 GGCGATTGTTATCTTCCCAAGGTAGTAGGGAAGAACATTTAAGCCACTAGCCTTATCTCCCTGGT
131 GGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGT
* *
20775450 CAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGGAGTGGAATAGGTTGAAG
196 CAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGATTGAAG
* * ** * ** * *
20775515 ATTCTGAGTTCTATCTCCTTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCGG
261 ATTCTGAGTCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATGGTAAGTCCTATCTCCCTG
* * * * * * * *
20775580 GTCAACAGTGAAAATAGGTGAAACCTATCTCTCTGATCACCAGTGGAATAGGTTGAAGATTTG
326 GTCAGCAGTG-GAATAGGTGAATCCGATCTCCCTGGTCACCAGTAGAATAGGTTGAAGA-TTA
* *
20775643 TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG-GTC
1 TGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTCCCTGAG-C
* * * * ** * * ** * * * *
20775707 AGGAATGGAATAGGTTGAAGATT-GTGAATCCTATGAT-CCTGAGCAGCAGTGGAGTAGGTTGAA
65 AGCAGTGGAGTAGGTTGAAAATTACAG-ATCTTAT-CTCCCAAAGCAGTAGTGGAGCAGATCGAA
***** * * * * * * ** **
20775770 -AATTATAGATCTTATC-TCCAAAAGCAGTAGTGGAA-CAGA-TGAAGACGGTGAATCTTATCTT
128 GACGGCGA-ATCTTATCTTCCCAAGGTAGTAG-GGAAGAAGATTTAAGCCACT-AGCCTTATC-T
* * * ** **** * * *
20775831 CCCAAGGT-AGTAG-GGAAGAAGATTTCAGCCACT-AG-CCTTATCTCCCTGGTTAGTAGTGGAA
189 CCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCCTAGTCAGCAGTGGAA
* * * * * * *
20775892 TAGGTTGAAGATTTTAAGTCATATCTCTCGGGT---CA---G--TA-GTC-AA-ATAGGTGAA-T
251 TAGATTGAAGATTCTGAGTCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGAT-GGT-AAGT
* * * * * * *
20775945 CCTATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGTATCCTATCTCCCCGGTCAGCAGT
314 CCTATCTCCCTGGTCAGCAGTGGA--A---T--AG---GTGAATCCGATCTCCCTGGTCACCAGT
*
20776010 -GTAATAGGTTGAAGATTT
369 AG-AATAGGTTGAAGATTA
* * * * ** * * *
20776028 TGAATCCTATCTCCCTAAG-CAGTAGTGGAGA-AGGTTGAAAATT-CCAGAT-TTATCTCCCTAA
1 TGAATCCTATCTCCCT-GGTCAGCAATGGA-ATAGGTTGAAGATTGTGA-ATCCTATGTCCCTGA
* * * * * * *** * * * * *
20776089 GCAGTAGTAGAGCAGATCGAAGACGGC-GATTGTTATCTTCCCAAGGTAGTAG-GGAAGAAGATT
63 GCAGCAGTGGAGTAGGTTGAAAATTACAGA-TCTTATC-TCCCAAAGCAGTAGTGG-AGCAGATC
* ** * ** * * * * ****
20776152 TAAG-CCACTAGCCTTATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTGTAAGTCC-TA
125 GAAGACGGCGAATCTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-CCTTA
* * * * * * * * *
20776212 TCTCCCTAGTCAGGAGTGGAATAGGTTCAAGATTCTGAGTTCTATCTCCTTGGTCAACAGTGGAA
186 TCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAA
* * * * **
20776277 TAGGTTGAAGATTCTAAGCCCTATCTCCCTA-GTCAACAGTAAAATAGGT----GA----AA--C
251 TAGATTGAAGATTCTGAGTCCTATCACCC-AGGTCAACAGTGGAATAGGTCGAAGATGGTAAGTC
* * * *
20776331 CTATCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG
315 CTATCTCCCTGGTCAGCAGTGG-A-A---T--AG---GTGAATCCGATCTCCCTGGTCACCAGTA
*
20776396 GAATAGGTTGAAGATTG
370 GAATAGGTTGAAGATTA
*
20776413 TGAATCCTATCTCCCTGGTCAGGAATGGAATAGGTTGAAGATTGTGAATCCTATGAT-CCTGAGC
1 TGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATG-TCCCTGAGC
* *
20776477 AGCAGTGGAGTAGGTTGAAAATTATAGATCTTATCT-CCAGAAGCAGTAGTGGAACAGAT-GAAG
65 AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCA-AAGCAGTAGTGGAGCAGATCGAAG
* * * *
20776540 ATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTCAGCCACTAGCCTTATCTCCCTA
129 ACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTG
* *
20776605 GTTAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGA
194 GTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGATTGA
* * * * * ** *
20776670 AGATTCTGAGTCTTATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCC
259 AGATTCTGAGTCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATGGTAAGTCCTATCTCCC
* * * * * *
20776735 TGGTCAGCAGTGGAATAGGTGAATCCTATATCCCTAGTCAGCAGTGGAATAGGTTGAAGATTG
324 TGGTCAGCAGTGGAATAGGTGAATCCGATCTCCCTGGTCACCAGTAGAATAGGTTGAAGATTA
* * * * * *
20776798 TCAATCCTATCTCCCTCGTCAGCAATGAAATAGGTTGAAGGTTGTGAATCCTATGTTCCAGAGCA
1 TGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTCCCTGAGCA
* * * *
20776863 GCAATGGAGTAGGTTGAAAATTAGAGATCCTATCTCTCAAAGC---A---GAGCAGATCGAAGAC
66 GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAC
* * * *
20776922 GGCGAATCTTACCTTCCCAATGTATTAGGGAAGAAGATTTAAGCCACTAGTCTTATCTCCCTGGT
131 GGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGT
* * *
20776987 CAGTAGTGGAATAGGTTAAAGATTTTAAGTCATATCTC
196 CAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTC
20777025 TCGGGTCAGT
Statistics
Matches: 2844, Mismatches: 618, Indels: 478
0.72 0.16 0.12
Matches are distributed among these distances:
374 2 0.00
375 2 0.00
376 126 0.04
377 35 0.01
378 11 0.00
379 14 0.00
380 102 0.04
381 11 0.00
382 9 0.00
383 18 0.01
384 357 0.13
385 754 0.27
386 899 0.32
387 150 0.05
388 145 0.05
389 9 0.00
390 6 0.00
391 2 0.00
392 3 0.00
393 7 0.00
394 7 0.00
395 40 0.01
396 116 0.04
397 15 0.01
398 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (386 bp):
TGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTCCCTGAGCA
GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAC
GGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGT
CAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGATTGAAG
ATTCTGAGTCCTATCACCCAGGTCAACAGTGGAATAGGTCGAAGATGGTAAGTCCTATCTCCCTG
GTCAGCAGTGGAATAGGTGAATCCGATCTCCCTGGTCACCAGTAGAATAGGTTGAAGATTA
Found at i:20773722 original size:78 final size:78
Alignment explanation
Indices: 20773593--20773745 Score: 209
Period size: 78 Copynumber: 2.0 Consensus size: 78
20773583 GGATTCTGAG
** * * *
20773593 TCCTATATCCCTGGTCACTGGTGGAATAGGTTCAAGATGGTAAGTCCTATCTCCCTGGTCAGCAG
1 TCCTATATCCCTGGTCACCAGTAGAATAGGTTCAAGATGGTAAGTCCTATCTCCCTGGACAGCAA
*
20773658 TGGAATAGGTGAA
66 CGGAATAGGTGAA
* * *
20773671 TCCTATCTCCCTGGTCACCAGTAGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGACAGCA
1 TCCTATATCCCTGGTCACCAGTAGAATAGGTTCAAGATGGT-AAGTCCTATCTCCCTGGACAGCA
20773735 ACGGAATAGGT
65 ACGGAATAGGT
20773746 TGAAGATTGT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 63 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (78 bp):
TCCTATATCCCTGGTCACCAGTAGAATAGGTTCAAGATGGTAAGTCCTATCTCCCTGGACAGCAA
CGGAATAGGTGAA
Found at i:20773953 original size:298 final size:299
Alignment explanation
Indices: 20773600--20774333 Score: 943
Period size: 298 Copynumber: 2.4 Consensus size: 299
20773590 GAGTCCTATA
* * * **
20773600 TCCCTGGTCACTGGTGGAATAGGTTCAAGATGGTAAGTCCTATCTCCCTGGTCAGCAGTGGAA-T
1 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGGAAGT
*
20773664 AGGTGAATCCTATCTCCCTGGTCACCAGTAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGG
66 AGGTGAATCCTATCTCCCTGGTCAGCAGTAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGG
* *
20773729 ACAGCAACGGAATAGGTTGAAGATTGTGAATCCTATGTTCCTGAGCAGCAGTGGAGTAGGTTGAA
131 ACAGCAACGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAA
* * *
20773794 AATTAGAGATCTTATCTC-CCAAGGCAGTAGTGGAGCAAATCGAAGACGGCGAATCTTACCTTCC
196 AATTACAGATCTTATCTCTCCAA-GCAGTAGTAGAGCAAATCGAAGACGGCGAATCTTACATTCC
*
20773858 CAAGGTAGTAGGAAAGAAGATTTAACCCACTAGCCTTATC
260 CAAGCTAGTAGGAAAGAAGATTTAACCCACTAGCCTTATC
* * * ** *
20773898 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAGCAGTCAAATT
1 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGGAAGT
* * * *
20773963 A-GTGAATCCTATCTCCCTTGTCAGTAGTGGAATATGTTGAAGATTGTGAATCCTATCTCCCTGG
66 AGGTGAATCCTATCTCCCTGGTCAGCAGTAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGG
* * ** * *
20774027 TCAGTAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAA
131 ACAGCAACGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAA
* * * * * *
20774092 AATTACAGATCTTATCTCTCTAAGTAGTTGTAGAGCAGATCGAAGACGGCGATTCTTATATTCCC
196 AATTACAGATCTTATCTCTCCAAGCAGTAGTAGAGCAAATCGAAGACGGCGAATCTTACATTCCC
* * * * **
20774157 AAGCTGGTAGGGAAGCAGATTTGAGTCACTAGCCTTATC
261 AAGCTAGTAGGAAAGAAGATTTAACCCACTAGCCTTATC
* * * * *
20774196 TCCCTCGTCAGTAATTGAACAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGTGGAATA
1 TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGG-A-A
*
20774261 GGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTA
64 -G-T--AG---GTGAATCCTATCTCCCTGGTCAGCAGTAGAATAGGTTGAAGATTGTGAATCCTA
20774326 TCTCCCTG
122 TCTCCCTG
20774334 AGCAGCGGTG
Statistics
Matches: 370, Mismatches: 54, Indels: 14
0.84 0.12 0.03
Matches are distributed among these distances:
298 304 0.82
299 6 0.02
300 1 0.00
302 1 0.00
304 1 0.00
308 57 0.15
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (299 bp):
TCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAGCAGTGGAAGT
AGGTGAATCCTATCTCCCTGGTCAGCAGTAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGG
ACAGCAACGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAA
AATTACAGATCTTATCTCTCCAAGCAGTAGTAGAGCAAATCGAAGACGGCGAATCTTACATTCCC
AAGCTAGTAGGAAAGAAGATTTAACCCACTAGCCTTATC
Found at i:20774671 original size:78 final size:78
Alignment explanation
Indices: 20774536--20774680 Score: 193
Period size: 78 Copynumber: 1.9 Consensus size: 78
20774526 GTTGACGATT
* ** * **
20774536 GTGAGTCCTATCTCCCTGGTCAACATTGGAATAGGTTGAAGATTGTACGTCCAATCTCGTTGGTC
1 GTGAATCCTATCTCCCTGGTCAACAGAGGAATAGGTTGAAGATTGTACATCCAATCTCCCTGGTC
20774601 AGTAGTGGAATAG
66 AGTAGTGGAATAG
* * *
20774614 GTGAATCCTATCTCCCTGGTTAGCAGAGGAATAGGTTGAAGATTGTGA-ATCCTATCTCCCTGGT
1 GTGAATCCTATCTCCCTGGTCAACAGAGGAATAGGTTGAAGATTGT-ACATCCAATCTCCCTGGT
20774678 CAG
65 CAG
20774681 CAATAGAATA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 56 0.98
79 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (78 bp):
GTGAATCCTATCTCCCTGGTCAACAGAGGAATAGGTTGAAGATTGTACATCCAATCTCCCTGGTC
AGTAGTGGAATAG
Found at i:20774730 original size:122 final size:122
Alignment explanation
Indices: 20774513--20774737 Score: 290
Period size: 122 Copynumber: 1.8 Consensus size: 122
20774503 CTCACCGATC
* * * * * * *
20774513 AGCAGTGGAATATGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACATTGGAATAGGTTGAAGA
1 AGCAGAGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAGA
* ** ** *
20774578 TTGTACGTCCAATCTCGTTGGTCAGTAGTGGAATAGGTGAATCCTATCTCCCTGGTT
66 TTGTACATCCAATCTCCCTGACCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTT
*
20774635 AGCAGAGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGATTGAAGA
1 AGCAGAGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAGA
* *
20774700 TTGTGA-ATCCTATCTCCCTGACCAGCAGTGGAGTAGGT
66 TTGT-ACATCCAATCTCCCTGACCAGCAGTGGAATAGGT
20774738 TGAAAATTAT
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
122 85 0.99
123 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (122 bp):
AGCAGAGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAGA
TTGTACATCCAATCTCCCTGACCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTT
Found at i:20774848 original size:298 final size:296
Alignment explanation
Indices: 20774544--20775509 Score: 1136
Period size: 298 Copynumber: 3.2 Consensus size: 296
20774534 TTGTGAGTCC
** * * ** *
20774544 TATCTCCCTGGTCAACATTGGAATAGGTTGAAGATTGTACGTCCAATCTCGTTGGTCAGTAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCCTGGTCAGCAGTGG
* *
20774609 AATAGGTGAATCCTATCTCCCTGGTTAGCAGAGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
66 AATAGGTGAATCCTATCTCCCTCGTTAGCAG-GGAATAGGTTGAATATTGTGAATCCTATCTCCC
* * * *
20774674 TGGTCAGCAATAGAATAGATTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTT
130 TGGTCAGTAGT-GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
* * * *
20774739 GAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATTGAAGACGGCGAATGTTATCTT
194 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATGTTATCTT
*
20774804 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTCGCCT
259 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * * *
20774842 TATCTCCGTGGTCAGTAGGGGAATAGGTTGAATATTGCAAGT-CATATCTCCCTGGTCAGCAGT-
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCA-ATCTCCCTGGTCAGCAGTG
* * *
20774905 GAGATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTGTGAATCCTATCTC
65 GA-ATAGGTGAATCCTATCTCCCTCGTTAGCAG-GGAATAGGTTGAATATTGTGAATCCTATCTC
* * * * *
20774970 TCTGGTGAGTAGTGTAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGCAGTGTAGTAGG
128 CCTGGTCAGTAGTG-AATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
* * * * * * * * * *
20775035 TTTAAAATAACAGATATTAACTCTCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGACTCTTATA
192 TTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATGTTATC
* * * * *
20775100 GTCCCAAGCTGGTAGGGAAGCAGATTTGAGCCACTAGCCT
257 TTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * * * *
20775140 TATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCCTGGTCAGCAGTGG
** ** ** ** * * *
20775205 AATAGGTTGAAGATTGTGAGTCTTATCTCCCT--C-GTCAACA-GTTGACTA-GGTGAATCCTAT
66 AATAGG-TG-A-ATCCT-A-TC-TCCCTCGTTAGCAGGGAATAGGTTGAATATTGTGAATCCTAT
* * *
20775265 CTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGTAGTGGAGA
125 CTCCCTGGTCAGTAGT-GAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGT
* *
20775330 AGGTTGAAAATTCCAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTGTT
189 AGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATGTT
*
20775395 ATCTTCCCAAGGTAGTAGGGAAGAACATTTAAGCCACTAGCCT
254 ATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * *
20775438 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGGAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCCTGGTCAGCAGTGG
20775503 AATAGGT
66 AATAGGT
20775510 TGAAGATTCT
Statistics
Matches: 557, Mismatches: 99, Indels: 25
0.82 0.15 0.04
Matches are distributed among these distances:
297 6 0.01
298 524 0.94
299 13 0.02
300 4 0.01
301 4 0.01
302 1 0.00
303 2 0.00
304 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (296 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCCTGGTCAGCAGTGG
AATAGGTGAATCCTATCTCCCTCGTTAGCAGGGAATAGGTTGAATATTGTGAATCCTATCTCCCT
GGTCAGTAGTGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGA
AAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATGTTATCTTCC
CAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
Found at i:20774934 original size:34 final size:35
Alignment explanation
Indices: 20774886--20774952 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 35
20774876 TTGCAAGTCA
20774886 TATCTCCCTGGTCAGCAGT-GAGATAGG-TGAATCC
1 TATCTCCCTGGTCAGCAGTGGA-ATAGGTTGAATCC
* *
20774920 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAT
20774953 ATTGTGAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 22 0.76
35 7 0.24
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (35 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAATCC
Found at i:20776016 original size:78 final size:78
Alignment explanation
Indices: 20775869--20776018 Score: 180
Period size: 78 Copynumber: 1.9 Consensus size: 78
20775859 CCACTAGCCT
* * *
20775869 TATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCTCGGGTCAGTAGTCA
1 TATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCCGGTCAGCAGTCA
20775934 AATAGGTGAATCC
66 AATAGGTGAATCC
* * *
20775947 TATCTCCCTTGTCT-GTAGTGGATTAGGTTGAAGATTGTGT-A-TCCTATCTCCCCGGTCAGCAG
1 TATCTCCCTGGT-TAGTAGTGGAATAGGTTGAAGATT-T-TAAGTCATATCTCCCCGGTCAGCAG
**
20776009 TGTAATAGGT
63 TCAAATAGGT
20776019 TGAAGATTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 57 0.93
79 3 0.05
80 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (78 bp):
TATCTCCCTGGTTAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCCGGTCAGCAGTCA
AATAGGTGAATCC
Found at i:20776425 original size:122 final size:122
Alignment explanation
Indices: 20776208--20776433 Score: 328
Period size: 122 Copynumber: 1.9 Consensus size: 122
20776198 GATTGTAAGT
* * * *
20776208 CCTATCTCCCTAGTCAGGAGTGGAATAGGTTCAAGATTCTGAGTTCTATCTCCTTGGTCAACAGT
1 CCTATCTCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAATCCTATCTCCCTGGTCAACAGT
20776273 GGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTAGTCAACAGTAAAATAGGTGAAA
66 GGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTAGTCAACAGTAAAATAGGTGAAA
* * * * *
20776330 CCTATCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGT
1 CCTATCTCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAATCCTATCTCCCTGGTCAACAGT
* * *
20776395 GGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCA
66 GGAATAGGTTGAAGATTCT-AAGCCCTATCTCCCTAGTCA
20776434 GGAATGGAAT
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
122 89 0.98
123 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (122 bp):
CCTATCTCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAATCCTATCTCCCTGGTCAACAGT
GGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTAGTCAACAGTAAAATAGGTGAAA
Found at i:20776463 original size:429 final size:429
Alignment explanation
Indices: 20775939--20776880 Score: 1390
Period size: 429 Copynumber: 2.2 Consensus size: 429
20775929 AGTCAAATAG
* * * * *
20775939 GTGAATCCTATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGTATCCTATCTCCCCGGTC
1 GTGAATCCTATCTCCCTCGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCCGGTC
* * * * *
20776004 AGCAGTGTAATAGGTTGAAGATTTTGAATCCTAT-CTCCCTAAGCAGTAGTGGAGAAGGTTGAAA
66 AGCAATGGAATAGGTTGAAGATTGTGAATCCTATGAT-CCTAAGCAGCAGTGGAGAAGGTTGAAA
* ** * * *
20776068 ATTCCAGAT-TTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTGTTATCTTCCCA
130 ATTACAGATCTTATCTCCAGAAGCAGTAGTAGAACAGAT-GAAGACGGCGAATCTTATCTTCCCA
*
20776132 AGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGA
194 AGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTAGTCAGTAGTGGAATAGGTTGA
*
20776197 AGATTGTAAGTCCTATCTCCCTAGTCAGGAGTGGAATAGGTTCAAGATTCTGAGT-TCTATCTC-
259 AGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCT-TATCTCA
20776260 CTTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTAGTCAACAGTAAAATAGG
323 C-TGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTAGTCAACAGTAAAATAGG
* * *
20776325 TGAAACCTATCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATT
387 TGAAACCTATATCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* *
20776368 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTC
1 GTGAATCCTATCTCCCTCGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCCGGTC
* * *
20776433 AGGAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTGAGCAGCAGTGGAGTAGGTTGAAAA
66 AGCAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTAAGCAGCAGTGGAGAAGGTTGAAAA
* * * *
20776498 TTATAGATCTTATCTCCAGAAGCAGTAGTGGAACAGATGAAGATGGTGAATCTTATCTTCCCAAG
131 TTACAGATCTTATCTCCAGAAGCAGTAGTAGAACAGATGAAGACGGCGAATCTTATCTTCCCAAG
* *
20776563 GTAGTAGGGAAGAAGATTTCAGCCACTAGCCTTATCTCCCTAGTTAGTAGTGGAATAGGTTGAAG
196 GTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAG
*
20776628 ATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCACTG
261 ATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCTTATCTCACTG
* * **
20776693 GTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
326 GTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTAGTCAACAGTAAAATAGGTGAA
*
20776758 TCCTATATCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
391 ACCTATATCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
* * * * * * *
20776797 GTCAATCCTATCTCCCTCGTCAGCAATGAAATAGGTTGAAGGTTGTGAATCCTATGTTCCAGAG-
1 GTGAATCCTATCTCCCTCGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCCG-GT
*
20776861 CAGCAATGGAGTAGGTTGAA
65 CAGCAATGGAATAGGTTGAA
20776881 AATTAGAGAT
Statistics
Matches: 461, Mismatches: 47, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
429 432 0.94
430 29 0.06
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (429 bp):
GTGAATCCTATCTCCCTCGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCCGGTC
AGCAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTAAGCAGCAGTGGAGAAGGTTGAAAA
TTACAGATCTTATCTCCAGAAGCAGTAGTAGAACAGATGAAGACGGCGAATCTTATCTTCCCAAG
GTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTAGTCAGTAGTGGAATAGGTTGAAG
ATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTCAAGATTCTGAGTCTTATCTCACTG
GTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTAGTCAACAGTAAAATAGGTGAA
ACCTATATCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
Found at i:20777122 original size:78 final size:78
Alignment explanation
Indices: 20776975--20777124 Score: 178
Period size: 78 Copynumber: 1.9 Consensus size: 78
20776965 CCACTAGTCT
* * *
20776975 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTTTAAGTCATATCTCTCGGGTCAGTAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTTTAAGTCATATCTCCCCGGTCAGCAGTCA
20777040 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * *
20777053 TATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGT-A-TCCTATCTCCCCGGTCAGCAGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATT-T-TAAGTCATATCTCCCCGGTCAGCAGT
**
20777116 GTAATAGGT
64 CAAATAGGT
20777125 TGAAGATTGT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
78 57 0.95
79 2 0.03
80 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTTTAAGTCATATCTCCCCGGTCAGCAGTCA
AATAGGTGAATCC
Found at i:20777397 original size:298 final size:293
Alignment explanation
Indices: 20776681--20778226 Score: 1101
Period size: 298 Copynumber: 5.3 Consensus size: 293
20776671 GATTCTGAGT
* ** * * * *
20776681 CTTATCTCACTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGTAGT
** ** ** * * * * *
20776746 GGAATAGGTGAATCCTAT-ATCCCTAGTCAGC-AGTGGAATAGGTTGAAGATTGTCAATCCTATC
66 CAAATAGGTGAAGACTATCA-CCCTTCTC-CCTAGTGCAATAGG-TGAACATGGTGAATCCTATC
* * * *
20776809 TCCCTCGTCAGCAATGAAATAGGTTGAAGGTTGTGAATCCTATGTTCC-AGAGCAGCAATGGAGT
128 TCCC-CGTCAGCAGTGAAATAGGTTGAAGATTGTGAATCCTATCTCCCTA-AGCAGCAATGGAGT
* * * *
20776873 AGGTTGAAAATTAGAGATCCTATCT--CT-CAA--AGCAGAGCAGATCGAAGACGGCGAATCTTA
191 AGGTTGAAAATTACAGAT-CTATCTCCCTAAAAGTAGTAGAGCAGATCGAAGACGGCGATTCTTA
* * *
20776933 CCTTCCCAATGTATTAGGGAAGAAGATTTAAGCCACTAGT
255 TCTTCCCAA-GTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * *
20776973 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTAAAGATTTTAAGTCATATCTCTCGGGTCAGTAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGTAGT
** * * ** * * * * *
20777038 CAAATAGGTGAATCCTATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGTATCCTATCTC
66 CAAATAGGTGAAGACTATCACCCTTCTCCCTAGTGCAATAGG-TGAACATGGTGAATCCTATCTC
*
20777103 CCCGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAATGGAGTAGG
130 CCC-GTCAGCAGTGAAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAATGGAGTAGG
* * *
20777168 TTGAAAATTATAGATCTTATCTCCCTAAATAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATA
194 TTGAAAATTACAGATC-TATCTCCCTAAA-AGTAGTAGAGCAGATCGAAGACGGCGATTCTTATC
* * *
20777233 TTCCCAAGCTGGTAGGGAAGCAGATTTGAGCCACTAGC
257 TTCCCAAG-TAGTAGGGAAGAAGATTTAAGCCACTAGC
* * * * * * *
20777271 CTTATCTCCTTGGTCAGTAATAGAACAGGTTGAAGCTTATAAGTCCTATCTCCCTGGTCAGTAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGTAGT
** * * * * *
20777336 GGAATAGGTTGAAGATTGTGGACCGTATCTCCCTGGT-CAATAGCG-GAACA-GGTGAATCCTAT
66 CAAATAGG-TGAAGACTAT-CACCCT-TCTCCCTAGTGCAATAG-GTGAACATGGTGAATCCTAT
* * * * ** *
20777398 CTCCCTTGTCAGCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGAGCAGCAGGGGAGA
127 CTCCC-CGTCAGCAGTGAAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAATGGAGT
*
20777463 AGGTTGAAAATTACAGATCT-TCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTA
191 AGGTTGAAAATTACAGATCTATCTCCCTAA-AAGTAGTAGAGCAGATCGAAGACGGCGATTCTTA
20777527 TCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
255 TCTTCCCAA-GTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * *
20777567 CTTATCTCCCTGGTAAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGTAGT
* ** * ** ** * * *
20777632 GAAGATTA--TGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCCTAT
66 CAA-A-TAGGTGAAGACTATCACCCTTCTCCCTAGTGCAATAGG-TGAACATGGTGAA-TCCTAT
* * * * * ** * * *
20777694 CTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTCTGAGTCCTATCTCCC-GGGTCAACAGTGGAA
127 CTCCC-CGTCAGCAGTGAAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAG-CAGCAATGGAG
* ** * * * * * *
20777758 TAGGTTGAAGATT-CTAAGCCCTATCTCCCT----G--GT-CAGCAG-TGGAATA-GGTGAATCC
190 TAGGTTGAAAATTAC--AGATCTATCTCCCTAAAAGTAGTAGAGCAGATCGAAGACGGCGATTCT
* ** * * * * * ****
20777813 TATATT-CCTGGTCAGCAGTGGAA-TAGGTTGACGATTGTGAGTC
253 TATCTTCCCAAGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-C
* ** * * * * * *
20777856 C-TATCTCTCTGGTCAACATTGGAATAGGTTGAAGATTGTATGTCCA-ATCTCCTTGGTCTGCAG
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGT-CATATCTCCCTGGTCAGTAG
** ** * * ** * * *
20777919 TGGAATAGGTGAATTCTATCTCCCAGGT-TAGC-AGTGGAATAGGTTGAAGATTGTGAATCCTAT
65 TCAAATAGGTGAAGACTATCACCC--TTCTCCCTAGTGCAATAGG-TGAACATGGTGAATCCTAT
* * * * *
20777982 CTCCCTGGTCAGCAAT-AGAATAGGTTGAAGATTGTGAATCCTATCTCCTTGAGCAGCAGTGGAG
127 CTCCC-CGTCAGCAGTGA-AATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAATGGAG
* * * *
20778046 TAGGTTAAAAATTACAGATCTTATCTCCC-AAAGCAGTAGTGGAGCAGATCGAAGACGACGAATC
190 TAGGTTGAAAATTACAGATC-TATCTCCCTAAA--AGTAGTAGAGCAGATCGAAGACGGCGATTC
* *
20778110 TTATATTCCCAAGATAGTAGGGAAGAAGATTTAAGCCACTATC
252 TTATCTTCCCAAG-TAGTAGGGAAGAAGATTTAAGCCACTAGC
* *
20778153 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTTC-TATCTCCCTAGTCAGTAG
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAG-TCATATCTCCCTGGTCAGTAG
**
20778217 TGGAATAGGT
65 TCAAATAGGT
20778227 TGACGATTGT
Statistics
Matches: 1004, Mismatches: 189, Indels: 116
0.77 0.14 0.09
Matches are distributed among these distances:
286 4 0.00
287 17 0.02
288 182 0.18
289 15 0.01
290 5 0.00
291 4 0.00
292 184 0.18
293 9 0.01
294 10 0.01
295 18 0.02
296 211 0.21
297 15 0.01
298 290 0.29
299 25 0.02
300 8 0.01
301 7 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (293 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGTAGT
CAAATAGGTGAAGACTATCACCCTTCTCCCTAGTGCAATAGGTGAACATGGTGAATCCTATCTCC
CCGTCAGCAGTGAAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAATGGAGTAGGTT
GAAAATTACAGATCTATCTCCCTAAAAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCC
CAAGTAGTAGGGAAGAAGATTTAAGCCACTAGC
Found at i:20777698 original size:78 final size:78
Alignment explanation
Indices: 20777569--20777870 Score: 311
Period size: 78 Copynumber: 3.7 Consensus size: 78
20777559 CCACTAGCCT
* * * * *
20777569 TATCTCCCTGGTAAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGA
20777634 AGATTATGAATCC
66 AGATTATGAATCC
* *
20777647 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCA---G
* *
20777712 AATAGGTTAAAGATTCTGAGTCC
63 --T--G---AAGATTATGAATCC
* * * *
20777735 TATCTCCCGGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGGTCAGCAGTG-
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGA
*
20777799 -GAATAGGTGAATCC
66 AGATTA--TGAATCC
* * * * *
20777813 TATATTCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCTCTGGTCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCA
20777871 ACATTGGAAT
Statistics
Matches: 187, Mismatches: 25, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
76 3 0.02
78 111 0.59
81 2 0.01
83 2 0.01
85 2 0.01
88 67 0.36
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (78 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGA
AGATTATGAATCC
Found at i:20777758 original size:166 final size:166
Alignment explanation
Indices: 20777569--20778440 Score: 630
Period size: 166 Copynumber: 5.2 Consensus size: 166
20777559 CCACTAGCCT
* * *
20777569 TATCTCCCTGGTAAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTAAGTCATATCTCCCTGGTCTGCAGTGA
*
20777634 AGATTATGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
66 AGATTATGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
* *
20777699 TAGTCAGCAGTGGAATAGGTTAAAGATTCTGAGTCC
131 TAGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCC
* * * * *
20777735 TATCTCCCGGGTCAACAGTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGGTCAGCAGTG-
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTAAGTCATATCTCCCTGGTCTGCAGTGA
* * * * *
20777799 -GAATAGGTGAATCCTATATTCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTATCTC
66 AGATTA--TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTC
* * * *
20777863 TCTGGTCAACATTGGAATAGGTTGAAGATTGT-ATGTCC
129 CCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGA-GTCC
* * * ** ** ** **
20777901 AATCTCCTTGGTCTGCAGTGGAATAGG-TG-A-ATTCTATCTCCCAGGT-TAGCAGTGGAAT--A
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTAAGT--CA--TATCTCCCTGGTCTGCA
* * *
20777960 GGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAA-TCCT
62 -G-TGAAGATTATGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCT
* * * * ** *
20778024 ATCTCCTTGAG-CAGCAGTGGAGTAGGTTAAAAATT-ACAGATCT
124 ATCTCCCT-AGTCAGCAGTGGAATAGGTTGAAGATTGTGAG-TCC
** * ** * * ** * * * *
20778067 TATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGACGACGAA-TCTTATAT-TCCCAAGATAGTA
1 TATCTCCC-TGGTCAGCAGTGGAATAGGTTGAAGA-TTCTAAGTC--ATATCTCCC-TGGT-CT-
* * * *
20778129 G-GGAAGAAGATTTAAGCCACTATCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT
59 GCAG-TGAAGA-TTATG--A--ATCC-TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT
* * *
20778193 AAGTTCTATCTCCCTAGTCAGTAGTGGAATAGGTTGACGATTGTGAGTCC
117 AAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCC
* * * * ** *
20778243 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCACATCTCGTTGGTCAGCAGTG-
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTAAGTCATATCTCCCTGGTCTGCAGTGA
* * * *
20778307 -GAATAGGTGAATCCTATCTCCCTGATTAGCAATGGAATAGGTTGAAGATTGTGAA-TCCTATCT
66 AGATTA--TGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCT
* * * * *
20778370 CCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCT
128 CCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCC
** *
20778409 TATCTCCCTGACCAGCAGTGGAGTAGGTTGAA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAA
20778441 AATTATAGAT
Statistics
Matches: 529, Mismatches: 134, Indels: 86
0.71 0.18 0.11
Matches are distributed among these distances:
163 6 0.01
164 6 0.01
165 6 0.01
166 355 0.67
167 14 0.03
168 6 0.01
169 7 0.01
170 10 0.02
171 4 0.01
172 2 0.00
173 2 0.00
174 5 0.01
175 13 0.02
176 91 0.17
177 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (166 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTAAGTCATATCTCCCTGGTCTGCAGTGA
AGATTATGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCC
TAGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCC
Found at i:20777834 original size:122 final size:122
Alignment explanation
Indices: 20777688--20778436 Score: 496
Period size: 122 Copynumber: 6.0 Consensus size: 122
20777678 AGATTGTAAG
* * * *
20777688 TCCTATCTCCCTA-GTCAGCAGTGGAATAGGTTAAAGATTCTGAGTCCTATCTCCCGGGTCAACA
1 TCCTATATCCC-AGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACA
* * * *
20777752 GTGGAATAGGTTGAAGATTCTAAGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
65 ATGGAATAGGTTGAAGATTGTAAGTCCTATCTCCTTGGTCAGCAGTGGAATAGGTGAA
* * * * *
20777810 TCCTATATTCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCTCTGGTCAACAT
1 TCCTATATCCCAGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAA
* * *
20777875 TGGAATAGGTTGAAGATTGTATGTCCAATCTCCTTGGTCTGCAGTGGAATAGGTGAA
66 TGGAATAGGTTGAAGATTGTAAGTCCTATCTCCTTGGTCAGCAGTGGAATAGGTGAA
* * * * *
20777932 TTCTATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAA
1 TCCTATATCCCAGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAA
* * *
20777997 TAGAATAGGTTGAAGATTGTGAA-TCCTATCTCCTTGAG-CAGCAGTGGAGTAGGTTAAAAA
66 TGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCTTG-GTCAGCAGTGGAATAGG-T--GAA
* * * ** * * * * * * *
20778057 TTACAGATCTTATCTCCCAAAG-CAGTAGTGGAGCAGATCGAAGA-CGACGAATCTTATATTCCC
1 -T-C----C-TATATCCC-AGGTCAGCAGTGGAATAGGTTGAAGATTG-TGAGTCCTAT-CTCCC
** ** * * * * **** * *
20778120 AAG--ATAGTAGGGAAGAAGATTTAAGCCACT-A-TCCTTATCTCCCTGGTCAGTAGTGGAATAG
56 TGGTCA-ACAATGGAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCTTGGTCAGCAGTGGAATA-
20778181 GTTGAAGATTGTAA
117 ---G--G--TG-AA
* * * * *
20778195 GTTCTATCTCCCTA-GTCAGTAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTTAAC
1 -TCCTATATCCC-AGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAAC
* *
20778259 AGTGGAATAGGTTGAAGATTGTAAGTCAC-ATCTCGTTGGTCAGCAGTGGAATAGGTGAA
64 AATGGAATAGGTTGAAGATTGTAAGTC-CTATCTCCTTGGTCAGCAGTGGAATAGGTGAA
* * * * * * *
20778318 TCCTATCTCCCTGATTAGCAATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAA
1 TCCTATATCCCAGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAA
* * * ** *
20778383 TAGAATAGGTTGAAGATTGTGAA-TCTTATCTCCCTGACCAGCAGTGGAGTAGGT
66 TGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCTTGGTCAGCAGTGGAATAGGT
20778437 TGAAAATTAT
Statistics
Matches: 481, Mismatches: 108, Indels: 76
0.72 0.16 0.11
Matches are distributed among these distances:
122 301 0.63
123 7 0.01
124 2 0.00
125 2 0.00
126 2 0.00
128 1 0.00
131 22 0.05
132 116 0.24
133 20 0.04
134 1 0.00
136 1 0.00
138 4 0.01
139 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (122 bp):
TCCTATATCCCAGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAA
TGGAATAGGTTGAAGATTGTAAGTCCTATCTCCTTGGTCAGCAGTGGAATAGGTGAA
Found at i:20778345 original size:386 final size:386
Alignment explanation
Indices: 20777823--20778612 Score: 1323
Period size: 386 Copynumber: 2.0 Consensus size: 386
20777813 TATATTCCTG
* *
20777823 GTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCTCTGGTCAACATTGGAATAGGTTGA
1 GTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGA
* * * * *
20777888 AGATTGTATGTCCAATCTCCTTGGTCTGCAGTGGAATAGGTGAATTCTATCTCCCAGGTTAGCAG
66 AGATTGTAAGTCCAATCTCCTTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCAGATTAGCAA
20777953 TGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTG
131 TGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTG
* *
20778018 AATCCTATCTCCTTGAGCAGCAGTGGAGTAGGTTAAAAATTACAGATCTTATCTCCCAAAGCAGT
196 AATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTAAAAATTACAGATCTTATCTCCCAAAGCAGT
20778083 AGTGGAGCAGATCGAAGACGACGAATCTTATATTCCCAAGATAGTAGGGAAGAAGATTTAAGCCA
261 AGTGGAGCAGATCGAAGACGACGAATCTTATATTCCCAAGATAGTAGGGAAGAAGATTTAAGCCA
*
20778148 CTATCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTTC-TATCTCCCTA
326 CTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG-TCATATCTCCCTA
* *
20778209 GTCAGTAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTTAACAGTGGAATAGGTTGA
1 GTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGA
* *
20778274 AGATTGTAAGT-CACATCTCGTTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGATTAGCA
66 AGATTGTAAGTCCA-ATCTCCTTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCAGATTAGCA
20778338 ATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGT
130 ATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGT
* * *
20778403 GAATCTTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCAG
195 GAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTAAAAATTACAGATCTTATCTCCCAAAGCAG
* * * * *
20778468 TAGTGGAGCAGATTGAAGACGGCGAATGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCC
260 TAGTGGAGCAGATCGAAGACGACGAATCTTATATTCCCAAGATAGTAGGGAAGAAGATTTAAGCC
* *
20778533 ACTCGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTG
325 ACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTA
*
20778595 GTCAGCAGTGAAATAGGT
1 GTCAGCAGTGGAATAGGT
20778613 GAATCCTATC
Statistics
Matches: 376, Mismatches: 26, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
385 4 0.01
386 372 0.99
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (386 bp):
GTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGA
AGATTGTAAGTCCAATCTCCTTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCAGATTAGCAA
TGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTG
AATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTAAAAATTACAGATCTTATCTCCCAAAGCAGT
AGTGGAGCAGATCGAAGACGACGAATCTTATATTCCCAAGATAGTAGGGAAGAAGATTTAAGCCA
CTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTA
Found at i:20778370 original size:78 final size:78
Alignment explanation
Indices: 20778235--20778392 Score: 212
Period size: 78 Copynumber: 2.0 Consensus size: 78
20778225 GTTGACGATT
* * * **
20778235 GTGAGTCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCACATCTCGTTGGTC
1 GTGAATCCTATCTCCCTGATTAACAATGGAATAGGTTGAAGATTGTAAGTCACATCTCCCTGGTC
* *
20778300 AGCAGTGGAATAG
66 AGCAATAGAATAG
*
20778313 GTGAATCCTATCTCCCTGATTAGCAATGGAATAGGTTGAAGATTGTGAA-TC-CTATCTCCCTGG
1 GTGAATCCTATCTCCCTGATTAACAATGGAATAGGTTGAAGATTGT-AAGTCAC-ATCTCCCTGG
20778376 TCAGCAATAGAATAG
64 TCAGCAATAGAATAG
20778391 GT
1 GT
20778393 TGAAGATTGT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 1 0.01
78 67 0.96
79 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (78 bp):
GTGAATCCTATCTCCCTGATTAACAATGGAATAGGTTGAAGATTGTAAGTCACATCTCCCTGGTC
AGCAATAGAATAG
Found at i:20778633 original size:34 final size:35
Alignment explanation
Indices: 20778585--20778651 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
20778575 TTGTAAGTCA
20778585 TATCTCCCTGGTCAGCAGTGAAATAGG-TGAATCC
1 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAATCC
* * *
20778619 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAT
1 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAAT
20778652 ATTATGAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 24 0.83
35 5 0.17
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (35 bp):
TATCTCCCTGGTCAGCAGTGAAATAGGTTGAATCC
Found at i:20778674 original size:78 final size:78
Alignment explanation
Indices: 20778541--20778690 Score: 221
Period size: 78 Copynumber: 1.9 Consensus size: 78
20778531 CCACTCGCCT
*
20778541 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGA
20778606 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * *
20778619 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTATGAA-TCATATCTCTCTGGTCGGTAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTAT-AAGTCATATCTCCCTGGTCAGCAGTG
*
20778683 TAATAGGT
65 AAATAGGT
20778691 TGTAGATTGT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
78 62 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAGTGA
AATAGGTGAATCC
Found at i:20778973 original size:34 final size:34
Alignment explanation
Indices: 20778909--20778988 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 34
20778899 AGTGGAATAG
* * * *
20778909 GTTGAATATTGTGAGTCTTATCTCCCTGGTCAACA
1 GTTGAATA-GGTGAATCCTATCACCCTGGTCAACA
**
20778944 GTTGAATAGGTGAATCCTATCACCCTGGTCAGTA
1 GTTGAATAGGTGAATCCTATCACCCTGGTCAACA
*
20778978 GTGGAATAGGT
1 GTTGAATAGGT
20778989 TGAAGATTGT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
34 30 0.79
35 8 0.21
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (34 bp):
GTTGAATAGGTGAATCCTATCACCCTGGTCAACA
Found at i:20779301 original size:298 final size:298
Alignment explanation
Indices: 20778243--20779338 Score: 1068
Period size: 298 Copynumber: 3.7 Consensus size: 298
20778233 TTGTGAGTCC
* ** * **
20778243 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCACATCTCGTTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGG
* * * * *
20778308 ---AA--T--AG---GTGAATCCTATCTCCCTGATTAGCAATGGAATAGGTTGAAGATTGTGAAT
66 AATAAGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAT
* * * * *
20778363 CCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCTTATCTCCCTGACCAGCAGT
130 CATATCTCCCTGGTCAG---TAG--T--G--GAATAGTGTGAATCCTATCTCCCTGAGCAGCAGT
* * * * *
20778428 GGAGTAGGTTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
186 GGAATAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGA
* *
20778493 ATGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTCGCCT
251 TTGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
20778541 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGT-G
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGG
* * ** * *
20778605 -A-AA--T--AG---GTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAATATTATGAAT
66 AATAAGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAT
* * *
20778661 CATATCTCTCTGGTCGGTAGTGTAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGCAGT
130 CATATCTCCCTGGTCAGTAGTGGAATA----GT-G--TG--AATCCTATCTCCCTGAGCAGCAGT
* * * * * * * *
20778726 GGAGTAGGTTTAAAATTACAGATATTAACTCTCTAAGTAGTAGTAGAGCAGATCAAAGACAGCGA
186 GGAATAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGA
* * * * *
20778791 TTCTTATATTCCCAAGCTGGTAGGGAAGCAA-ATTTGAGCCACTAGCCT
251 TTGTTATCTTCCCAAGGTAGTAGGGAAG-AAGATTTAAGCCACTAGCCT
* * * * *
20778839 TATCTCCCTGGTCAGTAATGGAACAGGTTGAAGGTTATAAGTCTTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGG
* * * *
20778904 AATAGGTTGAATATTGTGAGTCTTATCTCCCTGGTCAACAGTTGAATA----G--G--TG-AATC
66 AATAAGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAATC
* * * * *
20778960 CTATCACCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTTCCTAAGCAGTAGTG
131 ATATCTCCCTGGTCAGTAGTGG-A-A---T--AG--TGTGAATCCTATCTCCCTGAGCAGCAGTG
*
20779025 GAAAAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAT
187 GAATAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAT
20779090 TGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
252 TGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * *
20779137 TATCTCCCTGATCAGTAGTGGAATAGGTTGAACATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGG
*
20779202 AATAAGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGT
66 AATAAGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAA-T
* * * *
20779267 CTTATCTCCCTGGTCAGCAGTGGAATAG-GTGAATCCGATCTCCCTG-GTCAGCAGTGGAATTGG
130 CATATCTCCCTGGTCAGTAGTGGAATAGTGTGAATCCTATCTCCCTGAG-CAGCAGTGGAATAGG
20779330 TTGAAAATT
194 TTGAAAATT
20779339 GTGAATCCTA
Statistics
Matches: 659, Mismatches: 97, Indels: 84
0.78 0.12 0.10
Matches are distributed among these distances:
289 3 0.00
291 1 0.00
293 2 0.00
294 1 0.00
295 3 0.00
296 2 0.00
297 4 0.01
298 566 0.86
299 4 0.01
300 5 0.01
301 4 0.01
302 2 0.00
303 4 0.01
304 2 0.00
305 2 0.00
306 3 0.00
307 3 0.00
308 48 0.07
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (298 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGG
AATAAGTTGAAGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAATC
ATATCTCCCTGGTCAGTAGTGGAATAGTGTGAATCCTATCTCCCTGAGCAGCAGTGGAATAGGTT
GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTGTTATCTT
CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
Found at i:20779355 original size:78 final size:78
Alignment explanation
Indices: 20779226--20779374 Score: 228
Period size: 78 Copynumber: 1.9 Consensus size: 78
20779216 TCTGAGTCCT
* * *
20779226 ATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGGA
1 ATCTCCCTGGTCAACAGTGGAATAGGTTGAAAATTGTAAGTCCTATCTCCCTGGTCAGCAATGGA
20779291 ATAGGTGAATCCG
66 ATAGGTGAATCCG
* * *
20779304 ATCTCCCTGGTCAGCAGTGGAATTGGTTGAAAATTGTGAA-TCCTATCTCCCTGGTCAGGAATGG
1 ATCTCCCTGGTCAACAGTGGAATAGGTTGAAAATTGT-AAGTCCTATCTCCCTGGTCAGCAATGG
20779368 AATAGGT
65 AATAGGT
20779375 TGAAGATTGT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
78 62 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (78 bp):
ATCTCCCTGGTCAACAGTGGAATAGGTTGAAAATTGTAAGTCCTATCTCCCTGGTCAGCAATGGA
ATAGGTGAATCCG
Found at i:20779407 original size:122 final size:122
Alignment explanation
Indices: 20779182--20780188 Score: 399
Period size: 122 Copynumber: 7.9 Consensus size: 122
20779172 TGTAAGTCCT
* * *
20779182 ATCTCCCTGGTCAGCAGTGGAATAAGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAACAGTGGA
1 ATCTCCCTGGTCAGCAGTGGAATAAGTTGAAAATTCTGAATCCTATCTCCCTGGTCAACAATGGA
* *
20779247 ATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCG
66 ATAGGTTGAAGATTGTAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTGAATCCG
** * **
20779304 ATCTCCCTGGTCAGCAGTGGAATTGGTTGAAAATTGTGAATCCTATCTCCCTGGTCAGGAATGGA
1 ATCTCCCTGGTCAGCAGTGGAATAAGTTGAAAATTCTGAATCCTATCTCCCTGGTCAACAATGGA
* *
20779369 ATAGGTTGAAGATTGTGAA-TCCTATGAT-CCTGAG-CAGCAGTGGAGTAGGTTTAAAATTACAG
66 ATAGGTTGAAGATTGT-AAGTCCTAT-ATCCCTG-GTCAGCAGTGGAATAGG--T-GAA-T-C--
*
20779431 ATCTC
121 --C-G
** * * * *** ** * **
20779436 ATCTCCCAAAG-CAGTAGTGGAA-CAGATGAAGACGGC-GAATGTTATCTTCCCATAGT--AGTA
1 ATCTCCC-TGGTCAGCAGTGGAATAAGTTGAA-AATTCTGAATCCTATC-TCCC-TGGTCAACAA
* * * ** * * *
20779496 GGGAAGAAGATTTCAGCCA-T-T-AG-CCTTATCTCCCTGGTCAGTAGTAGAATAGGCTGAGGAT
62 TGGAA-TAGGTTGAAG--ATTGTAAGTCC-TATATCCCTGGTCAGCAGT-GGA-A---T-AGG--
*
20779557 TGTAAGTCCT
115 TG-AA-TCCG
* * * * * * *
20779567 ATCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTTCTATCTCCTTGGTCAACAATGGA
1 ATCTCCCTGGTCAGCAGTGGAATAAGTTGAAAATTCTGAATCCTATCTCCCTGGTCAACAATGGA
* * * * *
20779632 AGAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAAACCT
66 ATAGGTTGAAGATTGTAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTGAATCCG
* * *
20779689 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGAA-TGTGAATCCTATCTCCCTGGTCAGCAATGG
1 ATCTCCCTGGTCAGCAGTGGAATAAGTTGAA-AATTCTGAATCCTATCTCCCTGGTCAACAATGG
* * *
20779753 AATATGTTGAAGGTTGTGAA-TCCTATGAT-CCTGAG-CAGCAGTGGAGTAGGTTGAAAATTACA
65 AATAGGTTGAAGATTGT-AAGTCCTAT-ATCCCTG-GTCAGCAGTGGAATAGG-TG--AA-T-C-
*
20779815 GATCTT
121 ---C-G
** * * * * *** * * **
20779821 ATCTCCCAAAG-CAGTAGTTGAA-CAGATGAAGACGGC-GAATCTTATCTTCCCAAGGT--AGTA
1 ATCTCCC-TGGTCAGCAGTGGAATAAGTTGAA-AATTCTGAATCCTATC-TCCC-TGGTCAACAA
* * * ** **** * *
20779881 GGGAAGAAGATTTCAGCCACT-AG-CCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG
62 TGGAA-TAGGTTGAAGATTGTAAGTCC-TATATCCCTGGTCAGCAGTGGAATA----G--G--TG
*
20779944 TAAGTCCT
117 -AA-TCCG
* * * * *
20779952 ATCTCCCTAGTCAGCAGTGGAATACGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAACAGTGGA
1 ATCTCCCTGGTCAGCAGTGGAATAAGTTGAAAATTCTGAATCCTATCTCCCTGGTCAACAATGGA
* * * *
20780017 ATAGGTTGAAGATTCTAAGTCCTGTCTCCCTGGTCAGCAGTGGAATAGGTGAATCCT
66 ATAGGTTGAAGATTGTAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTGAATCCG
* * * * *
20780074 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGAA
1 ATCTCCCTGGTCAGCAGTGGAATAAGTTGAAAATTCTGAATCCTATCTCCCTGGTCAACAATGGA
* * * *
20780139 ATAGGTTGAAGGTTGTGAA-TCCTATGTTCCTGAG-CAGCAGTGGAGTAGGT
66 ATAGGTTGAAGATTGT-AAGTCCTATATCCCTG-GTCAGCAGTGGAATAGGT
20780189 TGAAAATTAG
Statistics
Matches: 658, Mismatches: 148, Indels: 158
0.68 0.15 0.16
Matches are distributed among these distances:
122 291 0.44
123 18 0.03
124 5 0.01
125 4 0.01
126 5 0.01
127 3 0.00
128 1 0.00
129 1 0.00
130 22 0.03
131 134 0.20
132 141 0.21
133 13 0.02
134 1 0.00
135 1 0.00
136 3 0.00
137 12 0.02
138 3 0.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (122 bp):
ATCTCCCTGGTCAGCAGTGGAATAAGTTGAAAATTCTGAATCCTATCTCCCTGGTCAACAATGGA
ATAGGTTGAAGATTGTAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTGAATCCG
Found at i:20779442 original size:166 final size:166
Alignment explanation
Indices: 20779138--20779442 Score: 395
Period size: 166 Copynumber: 1.8 Consensus size: 166
20779128 CACTAGCCTT
* * *
20779138 ATCTCCCTGATCAGTAGTGGAATAGGTTGAACATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGA
1 ATCTCCCTGATCAGCAGTGGAATAGGTTGAAAATTGTAAGTCCTATCTCCCTGGTCAGCAATGGA
* * *
20779203 ATAAGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTC
66 ATAAGTTGAAGATTCTGAATCCTATATCCCTGGTCAACAGTGGAATAGGTTGAAGAATGTAAGTC
*
20779268 TTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCG
131 TCATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCG
* * *
20779304 ATCTCCCTGGTCAGCAGTGGAATTGGTTGAAAATTGTGAA-TCCTATCTCCCTGGTCAGGAATGG
1 ATCTCCCTGATCAGCAGTGGAATAGGTTGAAAATTGT-AAGTCCTATCTCCCTGGTCAGCAATGG
* * * * *
20779368 AATAGGTTGAAGATTGTGAATCCTATGAT-CCTGAG-CAGCAGTGGAGTAGGTTTAA-AAT-TAC
65 AATAAGTTGAAGATTCTGAATCCTAT-ATCCCTG-GTCAACAGTGGAATAGGTTGAAGAATGTA-
20779429 AGATCTCATCTCCC
127 AG-TCTCATCTCCC
20779443 AAAGCAGTAG
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
164 2 0.02
165 4 0.03
166 109 0.92
167 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (166 bp):
ATCTCCCTGATCAGCAGTGGAATAGGTTGAAAATTGTAAGTCCTATCTCCCTGGTCAGCAATGGA
ATAAGTTGAAGATTCTGAATCCTATATCCCTGGTCAACAGTGGAATAGGTTGAAGAATGTAAGTC
TCATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCG
Found at i:20779624 original size:385 final size:386
Alignment explanation
Indices: 20778953--20780342 Score: 2248
Period size: 385 Copynumber: 3.6 Consensus size: 386
20778943 AGTTGAATAG
* * * ** *
20778953 GTGAATCCTATCACCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTTCCTAAGC
1 GTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTGAGC
* ** * * *
20779018 AGTAGTGGAAAAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGA
66 AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAACAGATCGAAGA
* *
20779083 CGGCGATTGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGA
131 CGGCGAATGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
* *
20779148 TCAGTAGTGGAATAGGTTGAACATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAAGTTGAA
196 TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAAGTTGAA
* *
20779213 GATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCT
261 GATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCT
* *
20779278 GGTCAGCAGTGGAATAGGTGAATCCGATCTCCCTGGTCAGCAGTGGAATTGGTTGAAAATT
326 GGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATT
*
20779339 GTGAATCCTATCTCCCTGGTCAGGAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTGAGC
1 GTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTGAGC
* *
20779404 AGCAGTGGAGTAGGTTTAAAATTACAGATCTCATCTCCCAAAGCAGTAGTGGAACAGAT-GAAGA
66 AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAACAGATCGAAGA
* *
20779468 CGGCGAATGTTATCTTCCCATA-GTAGTAGGGAAGAAGATTTCAGCCATTAGCCTTATCTCCCTG
131 CGGCGAATGTTATCTTCCCA-AGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTG
* * * * *
20779532 GTCAGTAGTAGAATAGGCTGAGGATTGTAAGTCCTATCTCCCTAGTCAGTAGTGGAATAGGTTGA
195 GTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAAGTTGA
* * * *
20779597 AGATTCTGAGTTCTATCTCCTTGGTCAACAATGGAAGAGGTTGAAGATTCTAAGTCCTATCTCCC
260 AGATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCC
*
20779662 TGGTCAGCAGTGGAATAGGTGAAACCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGAA-T
325 TGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAA-AATT
* *
20779724 GTGAATCCTATCTCCCTGGTCAGCAATGGAATATGTTGAAGGTTGTGAATCCTATGATCCTGAGC
1 GTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTGAGC
*
20779789 AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTTGAACAGAT-GAAGA
66 AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAACAGATCGAAGA
* *
20779853 CGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTCAGCCACTAGCCTTATCTCCCTGG
131 CGGCGAATGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
*
20779918 TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATACGTTGAA
196 TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAAGTTGAA
*
20779983 GATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTGTCTCCCT
261 GATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCT
*
20780048 GGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
326 GGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATT
* * *
20780109 GTGAATCCTATCTCCCTGGTCAGCAATGAAATAGGTTGAAGGTTGTGAATCCTATGTTCCTGAGC
1 GTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTGAGC
* * * *
20780174 AGCAGTGGAGTAGGTTGAAAATTAGAGATCTTATCACTCAAAGCAGTAGTGGAGCAGATCGAAGA
66 AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAACAGATCGAAGA
* *
20780239 CGGCGAATGTTACCTTCCCAATGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
131 CGGCGAATGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
* *
20780304 TCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTC
196 TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTC
20780343 TCGGGTCAGC
Statistics
Matches: 931, Mismatches: 68, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
384 2 0.00
385 713 0.77
386 216 0.23
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (386 bp):
GTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGATCCTGAGC
AGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAACAGATCGAAGA
CGGCGAATGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAAGTTGAA
GATTCTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCT
GGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATT
Found at i:20779738 original size:78 final size:78
Alignment explanation
Indices: 20779609--20779756 Score: 217
Period size: 78 Copynumber: 1.9 Consensus size: 78
20779599 ATTCTGAGTT
* * *
20779609 CTATCTCCTTGGTCAACAATGGAAGAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAGTG
1 CTATCTCCCTGGTCAACAATGGAAGAGGTTGAAGAATCTAAGTCCTATCTCCCTGGTCAGCAATG
20779674 GAATAGGTGAAAC
66 GAATAGGTGAAAC
* * * *
20779687 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGAATGTGAA-TCCTATCTCCCTGGTCAGCAAT
1 CTATCTCCCTGGTCAACAATGGAAGAGGTTGAAGAATCT-AAGTCCTATCTCCCTGGTCAGCAAT
20779751 GGAATA
65 GGAATA
20779757 TGTTGAAGGT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 60 0.97
79 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (78 bp):
CTATCTCCCTGGTCAACAATGGAAGAGGTTGAAGAATCTAAGTCCTATCTCCCTGGTCAGCAATG
GAATAGGTGAAAC
Found at i:20780084 original size:34 final size:34
Alignment explanation
Indices: 20780036--20780100 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
20780026 AGATTCTAAG
*
20780036 TCCTGTCTCCCTGGTCAGCAGTGGAATAGGTGAA
1 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
20780070 TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
1 TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
20780101 TGAAGATTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
Found at i:20780123 original size:78 final size:78
Alignment explanation
Indices: 20779992--20780144 Score: 245
Period size: 78 Copynumber: 2.0 Consensus size: 78
20779982 AGATTCTGAG
* *
20779992 TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTGTCTCCCTGGTCAGCAG
1 TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAA
*
20780057 TGGAATAGGTGAA
66 TGAAATAGGTGAA
* *
20780070 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCA
1 TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCT-AAGTCCTATCTCCCTGGTCAGCA
20780134 ATGAAATAGGT
65 ATGAAATAGGT
20780145 TGAAGGTTGT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
78 67 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (78 bp):
TCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAA
TGAAATAGGTGAA
Found at i:20780325 original size:298 final size:298
Alignment explanation
Indices: 20779995--20781346 Score: 1585
Period size: 298 Copynumber: 4.5 Consensus size: 298
20779985 TTCTGAGTCC
** * * *
20779995 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTCTAAGTCCTGTCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGCAGTGG
20780060 AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
66 AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* * * * *
20780125 TGGTCAGCAATGAAATAGGTTGAAGGTTGTGAATCCTATGTTCCTGAGCAGCAGTGGAGTAGGTT
131 TGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
* * * * * * * *
20780190 GAAAATTAGAGATCTTATCACTCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATGTTACCTT
196 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTT
*
20780255 CCCAATGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
261 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * **
20780293 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCTCGGGTCAGCAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGCAGTGG
* * * * *
20780358 AATAGGTGAATCCTATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGTATCCTATCTCCC
66 AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* * * **
20780423 TGGTCAACAGTGTAATAGGTTTAAGATTGTGAATCCTATCTCCCTAAGCAGCAACGGAGTAGGTT
131 TGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
* *
20780488 GAAAATTACAGATCTTATCTCCCTAAGTAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATATT
196 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTT
** * * * * * *
20780553 CCCAACCTGGAAAGGAAGCAGATTTGAGCCACTAGCCC
261 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * * * * * *
20780591 TATCTCCTTGGTCAGTAATGGAATAGGTTGAAGGTTATAAGTCCTATCTGCCTGGTCAGTAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGCAGTGG
* * *
20780656 AATAGGTTAAAGTTTGTGAATCGTATCTCCCTGGTCAACAGCGG-A-A---T--AG---GTGAAT
66 -A-A---T--AG---GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * *
20780711 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGAGTAGCAGG
121 CCTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGT
*
20780776 GGAGAAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGA
186 GGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGA
*
20780841 TTGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
251 TTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * *
20780889 TATCTCCGTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGCAGTGG
* * *
20780954 AATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
66 AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* * *
20781019 TGGTCAGCAGCGTAATAGGTTGAAGATTGTGAATCGTATCACCCTGAGCAGCAGTGGAGTAGGTT
131 TGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
* * * * * *
20781084 GAAAATTATAGATCCTATCTCCCTAAGCAGCAGTGGAGCAGATCGAATATGGCGATTCTTATCTT
196 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTT
* * * * *
20781149 TCCAAGGTAGTAGGCAAGCAGATATATGCCACTAGCCT
261 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * * *
20781187 TATCTCCCTGGTCAGTAGTAGAATAGGCTGAAGATTGTAAGTCGA-ATCTCACC-GATCAGCAGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTC-ATATCTC-CCTGGTCAGCAGT
* * * **
20781250 GGAATATGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGATTGAAGATTGTCT
64 GG-A-A---T-A-G---GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA
* * * * *
20781315 GTCCAATCTCCTTGGTCTGCAGTGCAATAGGT
119 ATCCTATCTCCCTGGTCAGCAGTGTAATAGGT
20781347 GAATTCTATC
Statistics
Matches: 885, Mismatches: 137, Indels: 54
0.82 0.13 0.05
Matches are distributed among these distances:
288 24 0.03
289 1 0.00
290 1 0.00
291 2 0.00
293 2 0.00
295 2 0.00
296 1 0.00
297 1 0.00
298 745 0.84
299 5 0.01
300 2 0.00
301 2 0.00
303 3 0.00
304 1 0.00
305 3 0.00
306 1 0.00
308 89 0.10
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (298 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCAGCAGTGG
AATAGGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
TGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTT
CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
Found at i:20780428 original size:78 final size:78
Alignment explanation
Indices: 20780293--20780442 Score: 187
Period size: 78 Copynumber: 1.9 Consensus size: 78
20780283 CCACTAGCCT
* *
20780293 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCTCGGGTCAGCAGTCA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAACAGTCA
20780358 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * * *
20780371 TATCTCCCTTGTCTGTAGTGGATTAGGTTGAAGATTGTGT-A-TCCTATCTCCCTGGTCAACAGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-T-TAAGTCATATCTCCCGGGTCAACAGT
**
20780434 GTAATAGGT
64 CAAATAGGT
20780443 TTAAGATTGT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
78 58 0.95
79 2 0.03
80 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCGGGTCAACAGTCA
AATAGGTGAATCC
Found at i:20780717 original size:34 final size:34
Alignment explanation
Indices: 20780671--20780740 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
20780661 GTTAAAGTTT
*
20780671 GTGAATCGTATCTCCCTGGTCAACAGCGGAATAG
1 GTGAATCCTATCTCCCTGGTCAACAGCGGAATAG
* *
20780705 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAG
1 GTGAATCCTATCTCCCTGGTCAACAGCGGAATAG
20780739 GT
1 GT
20780741 TGAAGATTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (34 bp):
GTGAATCCTATCTCCCTGGTCAACAGCGGAATAG
Found at i:20781018 original size:78 final size:78
Alignment explanation
Indices: 20780889--20781038 Score: 221
Period size: 78 Copynumber: 1.9 Consensus size: 78
20780879 CCACTAGCCT
* * * *
20780889 TATCTCCGTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTGAAGTCATATCTCCCTGGTCAGCAGCGA
20780954 AATAGGTGAATCC
66 AATAGGTGAATCC
* *
20780967 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGCG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-TGAAGTCATATCTCCCTGGTCAGCAGCG
*
20781031 TAATAGGT
65 AAATAGGT
20781039 TGAAGATTGT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
78 61 0.95
79 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTGAAGTCATATCTCCCTGGTCAGCAGCGA
AATAGGTGAATCC
Found at i:20781422 original size:78 final size:78
Alignment explanation
Indices: 20781274--20781424 Score: 180
Period size: 78 Copynumber: 1.9 Consensus size: 78
20781264 ATTGTGAGTC
* ** * *
20781274 CTATCTCCCTGGTCAACAGTGGAATAGATTGAAGATTGTCTGTCCAATCTCCTTGGTCTGCAGTG
1 CTATCTCCCAGGTCAACAGTGGAATAGATTGAAGATTGTCAATCCAATCTCCCTGGTCTGCAATG
20781339 CAATAGGTGAATT
66 CAATAGGTGAATT
* * * * *
20781352 CTATCTCCCAGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGT-TAGCAAT
1 CTATCTCCCAGGTCAACAGTGGAATAGATTGAAGATTGTCAATCCAATCTCCCTGGTCT-GCAAT
20781416 AG-AATAGGT
65 -GCAATAGGT
20781425 TGACAATTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
77 1 0.02
78 59 0.97
79 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (78 bp):
CTATCTCCCAGGTCAACAGTGGAATAGATTGAAGATTGTCAATCCAATCTCCCTGGTCTGCAATG
CAATAGGTGAATT
Found at i:20781468 original size:122 final size:122
Alignment explanation
Indices: 20781244--20781833 Score: 279
Period size: 122 Copynumber: 4.7 Consensus size: 122
20781234 CTCACCGATC
* * * * *
20781244 AGCAGTGGAATATGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGATTGAAGA
1 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAGA
** * *
20781309 TTGTCTGTCCAATCTCCTTGGTCTGCAGTGCAATAGGTGAATTCTATCTCCCAGGTT
66 TTGTCAATCCAATCTCCCTGGTCAGCAGTGCAATAGGTGAATTCTATCTCCCAGGTT
* * *
20781366 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTTAGCAATAGAATAGGTTGACA-
1 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGA-AG
* * * * *
20781430 ATTGTGAATCCTATCTCCCTGAG-CAGTAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCA
65 ATTGTCAATCCAATCTCCCTG-GTCAGCAGTGCAATAGG-TG--AA-T-----TC-TATCTCCC-
* *
20781494 AAG-C
118 AGGTT
* * ** * * * * * * * ** *
20781498 AGTAGTAGAGCAGATCGAAGA-GGTCGAATCTTATCTTCC----CAA-GATAGTAGGGA-AGAAG
1 AGCAGTGGAATAGGTTGAAGATTGT-GAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAG
* * * * * *
20781556 ATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATGGGTTGAAGATTGTAAGTTCTATC
65 A-TT--GTCA--ATCC-AATCTCCCTGGTCAGCAGTGCAA-----T--AG-GTG-AA-TTCTATC
*
20781621 TCCCTA-GTC
114 TCCC-AGGTT
* * * * * * *
20781630 AGCAGGGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGA
1 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAGA
* ** * *
20781695 TTGT-AAGTCAAATCTCGTTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTA-GTT
66 TTGTCAA-TCCAATCTCCCTGGTCAGCAGTGCAATAGGTGAATTCTATCTCCC-AGGTT
* * *
20781752 AGCAGTGGAATAGGTTGAATATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGA
1 AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAGA
* *
20781817 TTGTGAATCCTATCTCC
66 TTGTCAATCCAATCTCC
20781834 TTGACCAGCA
Statistics
Matches: 342, Mismatches: 86, Indels: 80
0.67 0.17 0.16
Matches are distributed among these distances:
122 163 0.48
123 8 0.02
124 2 0.01
125 5 0.01
126 4 0.01
127 9 0.03
128 1 0.00
129 2 0.01
131 9 0.03
132 109 0.32
133 7 0.02
134 1 0.00
135 1 0.00
136 2 0.01
137 7 0.02
138 8 0.02
139 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (122 bp):
AGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATAGAATAGATTGAAGA
TTGTCAATCCAATCTCCCTGGTCAGCAGTGCAATAGGTGAATTCTATCTCCCAGGTT
Found at i:20781788 original size:78 final size:78
Alignment explanation
Indices: 20781653--20781810 Score: 210
Period size: 78 Copynumber: 2.0 Consensus size: 78
20781643 GTTGACGATT
* * **
20781653 GTGAGTCCTATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCGTTGGTC
1 GTGAATCCTATCTCCCTAGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTC
* *
20781718 AGCAGTGGAATAG
66 AGCAATAGAATAG
* * **
20781731 GTGAATCCTATCTCCCTAGTTAGCAGTGGAATAGGTTGAATATTGTGAA-TCCTATCTCCCTGGT
1 GTGAATCCTATCTCCCTAGTTAACAGTGGAATAGGTTGAAGATTGT-AAGTCAAATCTCCCTGGT
20781795 CAGCAATAGAATAG
65 CAGCAATAGAATAG
20781809 GT
1 GT
20781811 TGAAGATTGT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
78 67 0.97
79 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (78 bp):
GTGAATCCTATCTCCCTAGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCCTGGTC
AGCAATAGAATAG
Found at i:20781843 original size:122 final size:122
Alignment explanation
Indices: 20781616--20781854 Score: 327
Period size: 122 Copynumber: 2.0 Consensus size: 122
20781606 ATTGTAAGTT
* * * * *
20781616 CTATCTCCCTAGTCAGCAGGGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTTAACAGTG
1 CTATCTCCCTAGTCAGCAGGGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATA
* **
20781681 GAATAGGTTGAAGATTGTAAGTCAAATCTCGTTGGTCAGCAGTGGAATAGGTGAATC
66 GAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGACCAGCAGTGGAATAGGTGAATC
* * * *
20781738 CTATCTCCCTAGTTAGCAGTGGAATAGGTTGAATATTGTGAATCCTATCTCCCTGGTCAGCAATA
1 CTATCTCCCTAGTCAGCAGGGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATA
** *
20781803 GAATAGGTTGAAGATTGTGAA-TCCTATCTCCTTGACCAGCAGTGGAGTAGGT
66 GAATAGGTTGAAGATTGT-AAGTCAAATCTCCTTGACCAGCAGTGGAATAGGT
20781855 TGAAAAATAT
Statistics
Matches: 101, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
122 99 0.98
123 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (122 bp):
CTATCTCCCTAGTCAGCAGGGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAATA
GAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGACCAGCAGTGGAATAGGTGAATC
Found at i:20782030 original size:386 final size:385
Alignment explanation
Indices: 20780889--20782030 Score: 1666
Period size: 386 Copynumber: 3.0 Consensus size: 385
20780879 CCACTAGCCT
* ** * * *
20780889 TATCTCCGTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTGGTCTGCAGTGA
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCTGCAGTGA
* * * *
20780954 AATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCC
66 AATAGGTGAATCCTATCTCCCTAGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
** * *
20781019 TGGTCAGC-AGCGTAATAGGTTGAAGATTGTGAATCGTATCACCCTGAGCAGCAGTGGAGTAGGT
131 TGGTCAGCAATAG-AATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
* * * * *
20781083 TGAAAATTATAGATCCTATCTCCCTAAGCAGCAGTGGAGCAGATCGAATATGGCGATTCTTATCT
195 TGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGA-GGCGAATCTTATCT
* * * * * *
20781148 TTCCAAGGTAGTAGGCAAGCAGATATATGCCACTAGCCTTATCTCCCTGGTCAGTAGTAGAATAG
259 TCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAG
* * *
20781213 GCTGAAGATTGTAAGTCGA-ATCTCACC-GATCAGCAGTGGAATATGTTGACGATTGTGAGTCC
324 GTTGAAGATTGTAAGTC-ATATCTC-CCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCC
* ** * *
20781275 TATCTCCCTGGTCAACAGTGGAATAGATTGAAGATTGTCTGTCCAATCTCCTTGGTCTGCAGTGC
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCTGCAGTGA
*
20781340 AATAGGTGAATTCTATCTCCC-AGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
66 AATAGGTGAATCCTATCTCCCTA-GTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCC
* *
20781404 CTGGTTAGCAATAGAATAGGTTGACA-ATTGTGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGG
130 CTGGTCAGCAATAGAATAGGTTGA-AGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
* *
20781468 TTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGAGGTCGAATCTTATC
194 TTGAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAGG-CGAATCTTATC
* *
20781533 TTCCCAAGATAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATG
258 TTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATA
* *
20781598 GGTTGAAGATTGTAAGTTC-TATCTCCCTAGTCAGCAGGGGAATAGGTTGACGATTGTGAGTCC
323 GGTTGAAGATTGTAAG-TCATATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCC
* * * *
20781661 TATCTCCCTGGTTAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCGTTGGTCAGCAGTGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCTGCAGTGA
*
20781726 AATAGGTGAATCCTATCTCCCTAGTTAGCAGTGGAATAGGTTGAATATTGTGAATCCTATCTCCC
66 AATAGGTGAATCCTATCTCCCTAGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
* *
20781791 TGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCTTGACCAGCAGTGGAGTAGGTT
131 TGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
* * *
20781856 GAAAAATATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATTGAAGACGGCGAATGTTATCTT
196 GAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGA-GGCGAATCTTATCTT
*
20781921 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTCGCCTTATCTCCCTGGTCAGTAGTGGAATAGG
260 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGG
* *
20781986 TTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAATGAAATAGGT
325 TTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGGAATAGGT
20782031 GAATCCTATC
Statistics
Matches: 677, Mismatches: 68, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
385 7 0.01
386 662 0.98
387 8 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (385 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCAAATCTCCTTGGTCTGCAGTGA
AATAGGTGAATCCTATCTCCCTAGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
TGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
GAAAATTATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGAGGCGAATCTTATCTTC
CCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGT
TGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCC
Found at i:20782385 original size:34 final size:34
Alignment explanation
Indices: 20782342--20782406 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
20782332 AGATTGTAAG
*
20782342 TCCTATCTCCCTAGTCACCAGTGGACTAGGTGAA
1 TCCTATCTCCCTAGTCACCAGTGGAATAGGTGAA
* *
20782376 TCCTATCTCCCTGGTCAGCAGTGGAATAGGT
1 TCCTATCTCCCTAGTCACCAGTGGAATAGGT
20782407 TGAAGATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTAGTCACCAGTGGAATAGGTGAA
Found at i:20782605 original size:342 final size:342
Alignment explanation
Indices: 20782257--20784008 Score: 1119
Period size: 342 Copynumber: 5.1 Consensus size: 342
20782247 CCACTAGCCT
* * * * *
20782257 TATCTCCCTGGTCAGTAATGGAACAGGTTAAAGGTTATAAGTCCTATCTCCCTGGTCAGTAATGA
1 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGTAGTGG
* *
20782322 AATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCACCAGTGGACT-AGGTGAATCCTATCTCC
66 AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGACTAAGGTGAATCCTATCTCC
* *
20782386 CTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGTAGTGCAGAAGGT
131 CTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGTAGTGGAGCAGGT
* *
20782451 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCT
196 CGAAAATTACAGATCTTATCTCCC-AAGCAGTAGTAGAGCAGATCGAAGACGGCGAGTCTTATCT
* *
20782516 TCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAG
260 TCCCAAGGTAGTAGGGAAGTAGGTTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAG
*
20782581 GTTGAAGATTTTAAGTCA
325 GTTGAAGATTGTAAGTCA
* * * * * * *
20782599 TATCTCCCTAGTCTGCAGT-GAA-A---T-AA-G-T-GAA-TCTTATCTCCCTTGTCAGTAGTGT
1 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGTAGTGG
* *
20782654 AATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAGCGTAATAGG-TTGAAGATTGTGA
66 AATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCA--G---T-GGACT-AAG---GTGA
* * * * *
20782717 ATCATATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTAT-AGATCCTATCTCCCTAAGTAG
120 ATCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTGA-ATCCTATCTCCCTAAGCAG
* * ** * * * **
20782780 TAGTGGAGCAGATCGAAGATGGC-GATTCTTATCTTTCCAATGTAGTAGGCA-AGCAGATATAAG
183 TAGTGGAGCAGGTCGAAAATTACAGA-TCTTATC-TCCCAA-GCAGTA-GTAGAGCAGATCGAAG
** * * * * * *** **
20782843 -CCACTAGCCTTATC-TCCC-TGGTCAGAAGTGGAA-TAGGTTAAAAATTAC-AGAAGTTATCTC
244 ACGGCGAGTCTTATCTTCCCAAGGT-AGTAG-GGAAGTAGGTT-TAAGCCACTAG-CCTTATCTC
* * * * * ** *
20782903 CCTAAG-CAGTAGTAGAGTAGATCGAA-AAGGCGAA-TCTTA
305 CCT-GGTCAGTAGTGGAATAGGTTGAAGATTG-TAAGTC--A
* * * * * * ** * * *
20782942 TAT-TCCCAAGGT-AG-TAGGGAAGCAGATTTAA-GCCACT-AG-CCTTATCTTCCTTGTCATTA
1 TATCTCCC-TGGTCAGCAATGGAA-TAGGTTGAAGGTTA-TAAGTCC-TATCTCCCTGGTCAGTA
* * * *
20783001 GTGGAATAGGTTGACGATTGTAAGTCCTATCCCCCTAGTCAGCAGTGGAATAGGCTGAAAATTGT
62 GTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG---A--CT---AA-GGT
* * * *
20783066 GAATCCTATATCCCTGAG-CAGCAGTGGAGTAGGTTGCAA-ATTAT-AGATCTTATCTCCCTAAG
118 GAATCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTG-AAGATTGTGA-ATCCTATCTCCCTAAG
* * * **** * *
20783128 CAGTAGTAGAGCAGATCGAAGA-CGGTGATTCTTATCTTCCCAAG--GTAGTAGGGAAGTAGATT
180 CAGTAGTGGAGCAGGTCGAAAATTACAGA-TCTTATC-TCCCAAGCAGTAGTA--G-AGCAGATC
* ** * * * * * * ****
20783190 TAAG-CCACTAGCCTTATC-TCCC-TGGTCAGTAATGGAA-TAGGCTGAAGATTGTAAGTCC-TA
240 GAAGACGGCGAGTCTTATCTTCCCAAGGT-AGT-AGGGAAGTAGGTTTAAGCCACT-AG-CCTTA
* * * * *
20783250 TCTCCCTGGTCAGCAGTGGGATAGGTTGAAGGTTGTGAGTCT
301 TCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
* * * * * *
20783292 TATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
1 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGTAGTGG
*
20783357 AATAGG-T----A----AA-TCATATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAAT
66 AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAC-----T-AAG---GTGAAT
* * * * * * *
20783412 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATGTCCTTGAGCAGCAGT
122 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGTAGT
** *
20783477 GGAGTTGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGA
187 GGAGCAGGTCGAAAATTACAGATCTTATCTCCC-AAGCAGTAGTAGAGCAGATCGAAGACGGCGA
* * * *
20783542 TTCTTATCTTTCCAAGGTAGTAGGGAAGTAGATTTCAGCCACTAGCCTTATC-CCTCTGGTCAGT
251 GTCTTATCTTCCCAAGGTAGTAGGGAAGTAGGTTTAAGCCACTAGCCTTATCTCC-CTGGTCAGT
* *
20783606 AGTGGAATAGGTTGAAGACTGTAAGTCC
315 AGTGGAATAGGTTGAAGATTGTAAGTCA
* * * * * * * * * **
20783634 TATCTCCTTAGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCATATCTTCCTGGTCAACAGTGG
1 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGTAGTGG
* * *
20783699 AATAGGTTAAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATGGAAT-AGGTGAATCCTATCTCC
66 AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGACTAAGGTGAATCCTATCTCC
* * * * * *
20783763 CTAGTCAGCAGTGGAATAGGTTAAAGATTGAGAATCCTGTCTCCCTGAGCAGTAGTGGAGTAGGT
131 CTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGTAGTGGAGCAGGT
** ** * * * *
20783828 CGAAAATTACAGAAGTTATCTCCCTAAGCAGTAGTAGAGTTGATCGAAGAAGGCGAATCATATTT
196 CGAAAATTACAGATCTTATCTCCC-AAGCAGTAGTAGAGCAGATCGAAGACGGCGAGTCTTATCT
* * * *
20783893 TCCCAAGGTAGTAGGGAAGAAGGTTTAAGCCACTAGCCTTATCTTCCTGGTTAGCAGTGGAATAG
260 TCCCAAGGTAGTAGGGAAGTAGGTTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAG
*
20783958 GTTGAAGATTGTAAGTCC
325 GTTGAAGATTGTAAGTCA
*
20783976 TGTCTCCCTGGTCAGCAATGGAATAGGTTGAAG
1 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAG
20784009 ATTGTGAATC
Statistics
Matches: 1088, Mismatches: 223, Indels: 198
0.72 0.15 0.13
Matches are distributed among these distances:
332 54 0.05
333 4 0.00
334 2 0.00
335 1 0.00
336 2 0.00
337 4 0.00
338 2 0.00
339 3 0.00
340 6 0.01
341 43 0.04
342 583 0.54
343 46 0.04
344 12 0.01
345 4 0.00
346 1 0.00
347 6 0.01
348 6 0.01
349 1 0.00
350 16 0.01
351 229 0.21
352 60 0.06
353 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (342 bp):
TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGGTTATAAGTCCTATCTCCCTGGTCAGTAGTGG
AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGACTAAGGTGAATCCTATCTCC
CTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGTAGTGGAGCAGGT
CGAAAATTACAGATCTTATCTCCCAAGCAGTAGTAGAGCAGATCGAAGACGGCGAGTCTTATCTT
CCCAAGGTAGTAGGGAAGTAGGTTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGG
TTGAAGATTGTAAGTCA
Found at i:20782880 original size:132 final size:131
Alignment explanation
Indices: 20782721--20783014 Score: 374
Period size: 131 Copynumber: 2.2 Consensus size: 131
20782711 TTGTGAATCA
* * * * * *
20782721 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTATAGATCCTATCTCCCTAAGTAGTAGTG
1 TATCTCCCTG-GTCAGAAGTGGAATAGGTTGAAAATTACAGAACCTATCTCCCTAAGCAGTAGTA
* * * * *
20782785 GAGCAGATCGAAGATGGCGATTCTTATCTTTCCAATGTAGTAGGCAAGCAGATATAAGCCACTAG
65 GAGCAGATCGAA-AAGGCGAATCTTATATTCCCAAGGTAGTAGGCAAGCAGATATAAGCCACTAG
20782850 CCT
129 CCT
* **
20782853 TATCTCCCTGGTCAGAAGTGGAATAGGTTAAAAATTACAGAAGTTATCTCCCTAAGCAGTAGTAG
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAAATTACAGAACCTATCTCCCTAAGCAGTAGTAG
* * *
20782918 AGTAGATCGAAAAGGCGAATCTTATATTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCC
66 AGCAGATCGAAAAGGCGAATCTTATATTCCCAAGGTAGTAGGCAAGCAGATATAAGCCACTAGCC
20782983 T
131 T
* * **
20782984 TATCTTCCTTGTCATTAGTGGAATAGGTTGA
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTGA
20783015 CGATTGTAAG
Statistics
Matches: 139, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
131 75 0.54
132 64 0.46
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (131 bp):
TATCTCCCTGGTCAGAAGTGGAATAGGTTGAAAATTACAGAACCTATCTCCCTAAGCAGTAGTAG
AGCAGATCGAAAAGGCGAATCTTATATTCCCAAGGTAGTAGGCAAGCAGATATAAGCCACTAGCC
T
Found at i:20782903 original size:298 final size:296
Alignment explanation
Indices: 20781661--20782906 Score: 1461
Period size: 298 Copynumber: 4.2 Consensus size: 296
20781651 TTGTGAGTCC
* * * ** * *
20781661 TATCTCCCTGGTTA-ACAGTGGAATAGGTTGAAGATT-GTAAGTCAAATCTCGTTGGTCAGCAGT
1 TATCTCCCTGGTCAGA-AGTGGAATAGGTTAAAGATTAG-AAGTC-TATCTCCCTAGTCAGCAAT
* * * * * * *
20781724 GGAATAGGTGAATCCTATCTCCCTAGTTAGCAGTGGAATAGGTTGAATATTGTGAATCCTATCTC
63 GAAATAGGTGAATCCTATCTCCCTTGTCAGTAGT-TAATAGGTTGAAGATTATGAATCCTATCTC
* * *
20781789 CCTGGTCAGCAATAG-AATAGGTTGAAGATTGTGAATCCTATCTCCTTGACCAGCAGTGGAGTAG
127 CCTGGTCAGCAGT-GTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAG
* * * * * * *
20781853 GTTGAAAAATATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATTGAAGACGGCGAATGTTAT
191 GTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTAT
*
20781918 CTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTCGCCT
256 CTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * *
20781959 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATT-GTAAGTCATATCTCCCTGGTCAGCAATG
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTAAAGATTAG-AAGTC-TATCTCCCTAGTCAGCAATG
* * *
20782023 AAATAGGTGAATCCTATCTCCCTTGTCAGTAGTTGAATAGGTTGAATATTGTGAATCCTATCTCT
64 AAATAGGTGAATCCTATCTCCCTTGTCAGTAGTT-AATAGGTTGAAGATTATGAATCCTATCTCC
* * *
20782088 CTGGTCAGTAGTGTAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
128 CTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGT
* * * * * *
20782153 TGAAAATTACAGATATTAACTCTCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGATTCTTATAT
193 TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCT
* * * *
20782218 TCCCAAGCTGGTAGGGAAGCAGATTTGAGCCACTAGCCT
258 TCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * * * *
20782257 TATCTCCCTGGTCAGTAA-TGGAACAGGTTAAAGGTTATAAGTCCTATCTCCCTGGTCAGTAATG
1 TATCTCCCTGGTCAG-AAGTGGAATAGGTTAAAGATTAGAAGT-CTATCTCCCTAGTCAGCAATG
** ** * ** * ** *
20782321 AAATAGGTTGAAGATTGTAAGT-CCTATCTCCCTAGTCACCA-G-TG--GACTAGGTGAATCCTA
64 AAATAGG-TG-A-ATCCTATCTCCCT-TGTCAGTAGTTAATAGGTTGAAGATTA--TGAATCCTA
* * * *
20782381 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGTAGTGCAG
123 TCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAG
*
20782446 AAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCT
188 TAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCT
20782511 TATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
253 TATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* * ** * *
20782555 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTAGTCTGCAGTGA
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTAAAGATTAGAAGTC-TATCTCCCTAGTCAGCAATGA
* *
20782620 AATAAGTGAATCTTATCTCCCTTGTCAGTAGTGTAATAGGTTGAAGATTATGAATCCTATCTCCC
65 AATAGGTGAATCCTATCTCCCTTGTCAGTAGT-TAATAGGTTGAAGATTATGAATCCTATCTCCC
* *
20782685 TGGTCAGCAGCGTAATAGGTTGAAGATTGTGAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTT
129 TGGTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
* * * * *
20782750 GAAAATTATAGATCCTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGATTCTTATCTT
194 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTT
* * * * *
20782815 TCCAATGTAGTAGGCAAGCAGATATAAGCCACTAGCCT
259 CCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
*
20782853 TATCTCCCTGGTCAGAAGTGGAATAGGTTAAAAATTACAGAAGT-TATCTCCCTA
1 TATCTCCCTGGTCAGAAGTGGAATAGGTTAAAGATT--AGAAGTCTATCTCCCTA
20782907 AGCAGTAGTA
Statistics
Matches: 809, Mismatches: 117, Indels: 44
0.83 0.12 0.05
Matches are distributed among these distances:
295 12 0.01
296 8 0.01
297 6 0.01
298 752 0.93
299 5 0.01
300 14 0.02
301 12 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (296 bp):
TATCTCCCTGGTCAGAAGTGGAATAGGTTAAAGATTAGAAGTCTATCTCCCTAGTCAGCAATGAA
ATAGGTGAATCCTATCTCCCTTGTCAGTAGTTAATAGGTTGAAGATTATGAATCCTATCTCCCTG
GTCAGCAGTGTAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGA
AAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCC
CAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
Found at i:20782903 original size:596 final size:595
Alignment explanation
Indices: 20781775--20782905 Score: 1748
Period size: 596 Copynumber: 1.9 Consensus size: 595
20781765 GTTGAATATT
* *
20781775 GTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCTTGACC
1 GTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAACC
* * * * *
20781840 AGCAGTGGAGTAGGTTGAAAAATATAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATTGAAGA
66 AGCAGTGCAGAAGGTTGAAAAATACAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGA
* *
20781905 CGGCGAATGTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTCGCCTTATCTCCCTGG
131 CGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
* *
20781970 TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAATGAAATAGGTGAAT
196 TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAATGAAATAAGTGAAT
* * * * *
20782035 CCTATCTCCCTTGTCAGTAGTTGAATAGGTTGAATATTGTGAATCCTATCTCTCTGGTCAGTAGT
261 CCTATCTCCCTTGTCAGTAGTTGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGC
* *
20782100 GTAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAG
326 GTAATAGGTTGAAGATTGTAAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAG
* * *
20782165 ATATTAACTCTCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGATTCTTATATTCCCAAGCTGGT
391 ATACTAACTCCCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGATTCTTATATTCCCAAGCTAGT
* * * ** *
20782230 AGGGAAGCAGATTTGAGCCACTAGCCTTATCTCCCTGGTCAGTAATGGAACAGGTTAAAGGTTAT
456 AGGCAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAATGGAACAGGTTAAAAATTAG
20782295 AAGTCCTATCTCCCTGGTCAGTAATGAAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAC
521 AAGT-CTATCTCCCTGGTCAGTAATGAAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAC
20782360 CAGTGGACTAG
585 CAGTGGACTAG
* * *
20782371 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGC
1 GTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAACC
* * *
20782436 AGTAGTGCAGAAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGA
66 AGCAGTGCAGAAGGTTGAAAAATACAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGA
*
20782501 CGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
131 CGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
* * *
20782566 TCAGTAGTGGAATAGGTTGAAGATTTTAAGTCATATCTCCCTAGTCTGCAGTGAAATAAGTGAAT
196 TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAATGAAATAAGTGAAT
*
20782631 CTTATCTCCCTTGTCAGTAG-TGTAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAG
261 CCTATCTCCCTTGTCAGTAGTTG-AATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAG
* *
20782695 CGTAATAGGTTGAAGATTGTGAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTATA
325 CGTAATAGGTTGAAGATTGTAAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACA
* * * ** * *
20782760 GATCCTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGATTCTTATCTTTCCAATG-TA
390 GATACTAACTCCCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGATTCTTATATTCCCAA-GCTA
*
20782824 GTAGGCAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAG-AAGTGGAATAGGTTAAAAAT
454 GTAGGCAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAA-TGGAACAGGTTAAAAAT
20782888 TACAGAAGT-TATCTCCCT
518 T--AGAAGTCTATCTCCCT
20782906 AAGCAGTAGT
Statistics
Matches: 482, Mismatches: 48, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
595 4 0.01
596 472 0.98
597 1 0.00
598 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (595 bp):
GTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAACC
AGCAGTGCAGAAGGTTGAAAAATACAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGA
CGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCTTATCTCCCTGG
TCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTAGTCAGCAATGAAATAAGTGAAT
CCTATCTCCCTTGTCAGTAGTTGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAGC
GTAATAGGTTGAAGATTGTAAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAG
ATACTAACTCCCTAAGTAGTAGTAGAGCAGATCGAAGACAGCGATTCTTATATTCCCAAGCTAGT
AGGCAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAATGGAACAGGTTAAAAATTAG
AAGTCTATCTCCCTGGTCAGTAATGAAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCACC
AGTGGACTAG
Found at i:20783421 original size:78 final size:78
Alignment explanation
Indices: 20783292--20783441 Score: 239
Period size: 78 Copynumber: 1.9 Consensus size: 78
20783282 TTGTGAGTCT
20783292 TATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
1 TATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
20783357 AATAGGTAAATCA
66 AATAGGTAAATCA
* * * * *
20783370 TATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAATG
1 TATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGT-AAGTACTATCTCCCTGGTCAGCAATG
20783434 GAATAGGT
65 GAATAGGT
20783442 TGAAGACTGC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 64 0.97
79 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (78 bp):
TATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
AATAGGTAAATCA
Found at i:20783533 original size:386 final size:386
Alignment explanation
Indices: 20783000--20783809 Score: 1246
Period size: 386 Copynumber: 2.1 Consensus size: 386
20782990 CCTTGTCATT
* * * * *
20783000 AGTGGAATAGGTTGACGATTGT-AAGTCCTATCCCCCTAGTCAGCAGTGGAATAGGCTGAAAATT
1 AGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAATGGAATAGGCTGAAAACT
* * * *
20783064 GTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAATTATAGATCTTATCTCCCTAAGC
65 GCGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGC
*
20783129 AGTAGTAGAGCAGATCGAAGACGGTGATTCTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAAG
130 AGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAAG
* *
20783194 CCACTAGCCTTATCTCC-CTGGTCAGTAATGGAATAGGCTGAAGATTGTAAGTCCTATCTCCCTG
195 CCACTAGCCTTATC-CCTCTGGTCAGTAATGGAATAGGCTGAAGACTGTAAGTCCTATCTCCCTA
* * * *
20783258 GTCAGCAGTGGGATAGGTTGAAGGTTGTGAGTCTTATCTCCCTGGTCAACAATGGAATAGGTTGA
259 GTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGTCAACAATGGAATAGGTTAA
*
20783323 AGATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTAAATCATATCTCCCTGGTCAGC
324 AGATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTAAATCATATCTCCCTAGTCAGC
* * * *
20783386 AGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTG
1 AGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGCTGAAAACTG
* * *
20783451 CGAATCCTATGTCCTTGAGCAGCAGTGGAGTTGGTTGAAAATTACAGATCTTATCTCCCAAAGCA
66 CGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCA
* *
20783516 GTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAGGGAAGTAGATTTCAGC
131 GTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAAGC
* * *
20783581 CACTAGCCTTATCCCTCTGGTCAGTAGTGGAATAGGTTGAAGACTGTAAGTCCTATCTCCTTAGT
196 CACTAGCCTTATCCCTCTGGTCAGTAATGGAATAGGCTGAAGACTGTAAGTCCTATCTCCCTAGT
* * *
20783646 CAGCAGTGGAATAGGTTGACGATTGTGAGTCATATCTTCCTGGTCAACAGTGGAATAGGTTAAAG
261 CAGCAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGTCAACAATGGAATAGGTTAAAG
* * *
20783711 ATTGTAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGTGAATCCTATCTCCCTAGTCAGC
326 ATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTAAATCATATCTCCCTAGTCAGC
* * *
20783772 AGTGGAATAGGTTAAAGATTGAGAATCCTGTCTCCCTG
1 AGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG
20783810 AGCAGTAGTG
Statistics
Matches: 382, Mismatches: 40, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
385 2 0.01
386 378 0.99
387 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (386 bp):
AGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGCTGAAAACTG
CGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCA
GTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAAGC
CACTAGCCTTATCCCTCTGGTCAGTAATGGAATAGGCTGAAGACTGTAAGTCCTATCTCCCTAGT
CAGCAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGTCAACAATGGAATAGGTTAAAG
ATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTAAATCATATCTCCCTAGTCAGC
Found at i:20783658 original size:298 final size:298
Alignment explanation
Indices: 20783290--20784988 Score: 1065
Period size: 298 Copynumber: 5.7 Consensus size: 298
20783280 GGTTGTGAGT
** * * * *
20783290 CTTATCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAAT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAGT
* * *
20783355 GGAATAGGTAAATCATATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTC
66 GGAATAGGTAAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
* * * * * *
20783420 CCTGGTCAGCAATGGAATAGGTTGAAGACTGCGAATCCTATGTCCTTGAGCAGCAGTGGAGTTGG
131 CCTGGTCAGCAGTGGAATAGGTTGAAGATTACGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
* *
20783485 TTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATC
196 TTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGTAGATCGAAGACGGCGATTCTTATC
* * *
20783550 TTTCCAAGGTAGTAGGGAAGTAGATTTCAGCCACTAGC
261 TTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * * *
20783588 CTTATC-CCTCTGGTCAGTAGTGGAATAGGTTGAAGACTGTAAGTCCTATCTCCTTAGTCAGCAG
1 CTTATCTCC-CTGGTCAGTAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAG
* * * *
20783652 TGGAATAGGTTGACGATTGTGAGTCATATCTTCCTGGTCAACAGTGGAATAGGTTAAAGATTGT-
65 TGGAATAGG-T-A--A-----A-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
*
20783716 AAGTCCTATCTCCCTGGTCAGCAATGGAATA----G--G--T--GAATCCTATCTCCCT-AGTCA
120 AA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTACGAATCCTATCTCCCTGAG-CA
* * * * ** * *
20783770 GCAGTGGAATAGGTT-AAAGATT-GAGAATCCTGTCTCCCTGAGCAGTAGTGGAGTAGGTCGAAA
183 GCAGTGGAGTAGGTTGAAA-ATTACAG-ATCTTATCTCCCAAAGCAGTAGTGGAGTAGATCGAAG
*** ** * * * *
20783833 ATTACAGA-AGTTATC-TCCCTAAGCAGTAGTAGAGTTGATCGAAGA---AGGCGA--A-T
246 ACGGC-GATTCTTATCTTCCC-AAG--GTAGTAG-G--GA-AGAAGATTTAAGCCACTAGC
* * * * * *** * *
20783886 CATATTTTCCCAAGGT-AGTAG-GGAAGAAGGTTTAAGCCACT-AG-CCTTATCTTCCTGGTTAG
1 CTTA-TCTCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTCTAAGTCC-TATCTCCCTGGTCAG
* *
20783947 CAGTGGAATAGGTTGAAGATTGTAAGTCCTGTCTCCCTGGTCAGCAATGGAATAGGTTGAAGATT
62 CAGTGGAATAGG-T----A----AA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATT
* * * *
20784012 GTGAATCCTATGAT-CCTGAG-CAGCAGTGGAGTAGGTTGAA-ATTTAC-AGATCTTATCT-CTT
117 GTGAATCCTAT-CTCCCTG-GTCAGCAGTGGAATAGGTTGAAGA-TTACGA-ATCCTATCTCCCT
* * * ** * ** * * *
20784072 AAAGCTGTAGTGGAACA-GATGAAGAA-GGC-GAATCTTATCTTCCCAAGGTAGTAG-GGAAGAA
178 -GAGCAGCAGTGGAGTAGGTTGAA-AATTACAG-ATCTTATC-TCCCAAAGCAGTAGTGG-AGTA
** ** * ** * * ** * * ****
20784133 GATTTAAG-CCACTAGACTTATC-TCTC-TGGTCAGTAGTGG-ATTAGGTTGAAGATTGTAAGTC
238 GATCGAAGACGGCGATTCTTATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AG-C
* * * * *
20784194 C-TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGCCAACAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAGT
*
20784258 GGAATTGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG-A-A---T--AG---GTGA
66 GGAA-----T--AG---GTAAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA
* ** *
20784313 ATCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCA
121 ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTACGAATCCTATCTCCCTGAGCAGCA
*
20784378 GTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTGGTGGAGTAGATCGAAGACGGC
186 GTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGTAGATCGAAGACGGC
* * *
20784443 GAATCTTACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGC
251 GATTCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * * * * * * **
20784491 CTTGTCTCCTTCGTGAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAAGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAGT
* * * *
20784556 GAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
66 GGAATAGGTAAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
* * ** * * *
20784621 TCTGGTCAGTAGTGTTATAGGTTGTAGATTACAAATCCTATCTCCCTGAGCAGCAATGGAGTAGG
131 CCTGGTCAGCAGTGGAATAGGTTGAAGATTACGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
* *
20784686 TTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTAGATTGAAGACGGCGATTCTTATC
196 TTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGTAGATCGAAGACGGCGATTCTTATC
* * * *
20784751 TTCCCATGGTAGCAGGGACGCAGATTTAAGCCACTAGC
261 TTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
* * *
20784789 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAACAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAGT
* *
20784854 GGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACTGTGG-A-A---T--AG---GTGA
66 GGAATAGG-T----A----AA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA
* * *
20784909 ATCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGGTTATGAATCCTATCTCCCTG-GTCAGC
121 ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTACGAATCCTATCTCCCTGAG-CAGC
* *
20784973 AATGGAATAGGTTGAA
185 AGTGGAGTAGGTTGAA
20784989 GATTGTGAAT
Statistics
Matches: 1070, Mismatches: 217, Indels: 228
0.71 0.14 0.15
Matches are distributed among these distances:
288 25 0.02
289 1 0.00
290 1 0.00
291 2 0.00
293 2 0.00
295 2 0.00
296 2 0.00
297 92 0.09
298 603 0.56
299 43 0.04
300 21 0.02
301 8 0.01
302 5 0.00
303 8 0.01
304 11 0.01
305 4 0.00
306 24 0.02
307 81 0.08
308 126 0.12
309 3 0.00
312 2 0.00
314 2 0.00
316 1 0.00
317 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (298 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTAAGTCCTATCTCCCTGGTCAGCAGT
GGAATAGGTAAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTC
CCTGGTCAGCAGTGGAATAGGTTGAAGATTACGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
TTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGTAGATCGAAGACGGCGATTCTTATC
TTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGC
Found at i:20783762 original size:34 final size:34
Alignment explanation
Indices: 20783719--20783783 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
20783709 AGATTGTAAG
*
20783719 TCCTATCTCCCTGGTCAGCAATGGAATAGGTGAA
1 TCCTATCTCCCTAGTCAGCAATGGAATAGGTGAA
*
20783753 TCCTATCTCCCTAGTCAGCAGTGGAATAGGT
1 TCCTATCTCCCTAGTCAGCAATGGAATAGGT
20783784 TAAAGATTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTAGTCAGCAATGGAATAGGTGAA
Found at i:20783989 original size:386 final size:383
Alignment explanation
Indices: 20783000--20784051 Score: 951
Period size: 386 Copynumber: 2.7 Consensus size: 383
20782990 CCTTGTCATT
* * * * * * *
20783000 AGTGGAATAGGTTGACGATTGTA-AGTCCTATCCCCCTAGTCAGCAGTGGAATAGG-CTGAAAAT
1 AGTGGAATAGGTTAAAGATTG-AGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTC-GAAAAC
** * * * * * * * * * * *
20783063 TGTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAATTATAGATCTTATCTCCCTAAG
64 TACGAAT-CTATCTCCCTAAGCAGCAGTAGAGTTGATCGAAAATGACAGATCATATCTCCCAAAG
* * *** ** * * *
20783128 CAGTAGTAGAGCAGATCGAAGACGGTGATTCTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAA
128 CAGTAGGAGAGAAGATCGAAGACCACGAGCCTTATCTTTCCAAGGTAGCAGGGAAGTAGATTGAA
* * * *
20783193 GCCACTAGCCTTATCTCCCTGGTCAGTAATGGAATAGGCTGAAGATTGTAAGTCCTATCTCCCTG
193 GACACTAGCC-T-TCTCCCTGGTCAGTAATGGAATAGGTTGAAGATTGTAAGTCCTATCTCCTTA
* * * *
20783258 GTCAGCAGTGGGATAGGTTGAAGGTTGTGAGTCTTATCTCCCTGGTCAACAATGGAATAGGTTGA
256 GTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGTCAACAATGGAATAGGTTAA
*
20783323 AGATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTAAATCATATCTCCCTGGTCAGC
321 AGATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTAAATCATATCTCCCTAGTCAGC
* * * * * * *
20783386 AGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTG
1 AGTGGAATAGGTTAAAGATTGAGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTCGAAAACTA
* * * * * * * *
20783451 CGAATCCTATGTCCTTGAGCAGCAGTGGAGTTGGTTGAAAATTACAGATCTTATCTCCCAAAGCA
66 CGAAT-CTATCTCCCTAAGCAGCAGTAGAGTTGATCGAAAATGACAGATCATATCTCCCAAAGCA
* * ** ** * ** *
20783516 GTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAGGGAAGTAGATTTCAGC
130 GTAGGAGAGAAGATCGAAGACCACGAGCCTTATCTTTCCAAGGTAGCAGGGAAGTAGATTGAAGA
* * *
20783581 CACTAGCCTTATCCCTCTGGTCAGTAGTGGAATAGGTTGAAGACTGTAAGTCCTATCTCCTTAGT
195 CACTAGCCTTCT-CC-CTGGTCAGTAATGGAATAGGTTGAAGATTGTAAGTCCTATCTCCTTAGT
* * *
20783646 CAGCAGTGGAATAGGTTGACGATTGTGAGTCATATCTTCCTGGTCAACAGTGGAATAGGTTAAAG
258 CAGCAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGTCAACAATGGAATAGGTTAAAG
* * *
20783711 ATTGTAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGTGAATCCTATCTCCCTAGTCAGC
323 ATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTAAATCATATCTCCCTAGTCAGC
* * * * *
20783772 AGTGGAATAGGTTAAAGATTGAGAATCCTGTCTCCCTGAG-CAGTAGTGGAGTAGGTCGAAAATT
1 AGTGGAATAGGTTAAAGATTGAGAATCCTATCTCCCTG-GTCAGCAATGGAATAGGTCGAAAACT
* * *
20783836 ACAGAAGT-TATCTCCCTAAGCAGTAGTAGAGTTGATCGAAGAA-GGC-GAATCATATTTTCCCA
65 AC-GAA-TCTATCTCCCTAAGCAGCAGTAGAGTTGATCGAA-AATGACAG-ATCATA-TCTCCCA
* * * ** * *
20783898 AGGTAGTAGG-GAAGAAGGTTTAAG-CCACTAGCCTTATC-TTCC-TGGTTAGCAGTGGAA-TAG
125 AAGCAGTAGGAG-AGAAGATCGAAGACCACGAGCCTTATCTTTCCAAGG-TAGCAG-GGAAGTAG
* *** *
20783958 GTTGAAGATTGTAAGTCCTGTCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAA-TCCTA
187 ATTGAAGACACT-AG-CCT-TCTCCCTGGTCAGTAATGGAATAGGTTGAAGATTGT-AAGTCCTA
* * *
20784022 TGATCCTGAG-CAGCAGTGGAGTAGGTTGAA
248 T-CTCCTTAGTCAGCAGTGGAATAGGTTGAA
20784052 ATTTACAGAT
Statistics
Matches: 558, Mismatches: 90, Indels: 36
0.82 0.13 0.05
Matches are distributed among these distances:
384 4 0.01
385 21 0.04
386 490 0.88
387 40 0.07
388 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (383 bp):
AGTGGAATAGGTTAAAGATTGAGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTCGAAAACTA
CGAATCTATCTCCCTAAGCAGCAGTAGAGTTGATCGAAAATGACAGATCATATCTCCCAAAGCAG
TAGGAGAGAAGATCGAAGACCACGAGCCTTATCTTTCCAAGGTAGCAGGGAAGTAGATTGAAGAC
ACTAGCCTTCTCCCTGGTCAGTAATGGAATAGGTTGAAGATTGTAAGTCCTATCTCCTTAGTCAG
CAGTGGAATAGGTTGAAGATTGTGAGTCATATCTCCCTGGTCAACAATGGAATAGGTTAAAGATT
GTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTAAATCATATCTCCCTAGTCAGC
Found at i:20784260 original size:219 final size:220
Alignment explanation
Indices: 20783753--20784270 Score: 695
Period size: 219 Copynumber: 2.4 Consensus size: 220
20783743 AATAGGTGAA
* * * *
20783753 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGAGAATCCTGTCTCCCTGAGCAGTAG
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAG
* * ***
20783818 TGGAGTAGGTCGAAAATTACAGAAGTTATCTCCCTAAGCAGTAGTAGAGTTGATCGAAGAAGGCG
66 TGGAGTAGGTTGAAAATTACAGAACTTATCTCCCTAAGCAGTAGTAGAACAGATCGAAGAAGGCG
* * * *
20783883 AATCATATTTTCCCAAGGTAGTAGGGAAGAAGGTTTAAGCCACTAGCCTTATCTTCCTGGTTAGC
131 AATCATATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGACTTATCTTCCTGGTCAGC
20783948 AGTGGAATAGGTTGAAGATTGTAAG
196 AGTGGAATAGGTTGAAGATTGTAAG
* * * *
20783973 TCCTGTCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGAT-CCTGAGCAGCA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAT-CTCCCTGAGCAGCA
* * * * *
20784037 GTGGAGTAGGTTGAAATTTACAGATCTTATCT-CTTAAAGCTGTAGTGGAACAGAT-GAAGAAGG
65 GTGGAGTAGGTTGAAAATTACAGAACTTATCTCCCT-AAGCAGTAGTAGAACAGATCGAAGAAGG
*
20784100 CGAATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGACTTATC-TCTCTGGTC
129 CGAATCATATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGACTTATCTTC-CTGGTC
* *
20784164 AGTAGTGGATTAGGTTGAAGATTGTAAG
193 AGCAGTGGAATAGGTTGAAGATTGTAAG
* * *
20784192 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTG-GCCAACA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAG-CAGCA
* *
20784256 GTGGAATTGGTTGAA
65 GTGGAGTAGGTTGAA
20784271 GATTGTAAGT
Statistics
Matches: 259, Mismatches: 34, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
218 4 0.02
219 158 0.61
220 96 0.37
221 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (220 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAG
TGGAGTAGGTTGAAAATTACAGAACTTATCTCCCTAAGCAGTAGTAGAACAGATCGAAGAAGGCG
AATCATATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGACTTATCTTCCTGGTCAGC
AGTGGAATAGGTTGAAGATTGTAAG
Found at i:20784323 original size:34 final size:34
Alignment explanation
Indices: 20784280--20784344 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
20784270 AGATTGTAAG
*
20784280 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
1 TCCTATCTCCCTGGTCACCAGTGGAATAGGTGAA
20784314 TCCTATCTCCCTGGTCACCAGTGGAATAGGT
1 TCCTATCTCCCTGGTCACCAGTGGAATAGGT
20784345 TGAAGATTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTGGTCACCAGTGGAATAGGTGAA
Found at i:20784365 original size:78 final size:78
Alignment explanation
Indices: 20784236--20784388 Score: 236
Period size: 78 Copynumber: 2.0 Consensus size: 78
20784226 AGATTCTGAG
* **
20784236 TCCTATCTCCCTGGCCAACAGTGGAATTGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAG
1 TCCTATCTCCCTGGCCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGACCAGCAG
20784301 TGGAATAGGTGAA
66 TGGAATAGGTGAA
* *
20784314 TCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGACCAGCA
1 TCCTATCTCCCTGGCCAACAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGACCAGCA
*
20784378 GTGGAGTAGGT
65 GTGGAATAGGT
20784389 TGAAAATTAC
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
78 66 0.97
79 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (78 bp):
TCCTATCTCCCTGGCCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGACCAGCAG
TGGAATAGGTGAA
Found at i:20784426 original size:122 final size:122
Alignment explanation
Indices: 20784192--20784414 Score: 306
Period size: 122 Copynumber: 1.8 Consensus size: 122
20784182 AGATTGTAAG
* * *
20784192 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGCCAACAG
1 TCCTATCTCCCTAGTCACCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGACCAACAG
* * **
20784257 TGGAATTGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
66 TGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCAAGTCAGCAGTGGAATAGGTGAA
* * *
20784314 TCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAG
1 TCCTATCTCCCTAGTCACCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGACCAACAG
* *
20784379 TGGAGTAGGTTGAA-AAT-TACAGATCTTATCTCCCAA
66 TGGAATAGGTTGAAGAATGTA-AG-TCCTATCTCCCAA
20784415 AGCAGTGGTG
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
120 2 0.02
121 4 0.05
122 81 0.93
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (122 bp):
TCCTATCTCCCTAGTCACCAGTGGAATAGGTTGAAGATTCTGAATCCTATCTCCCTGACCAACAG
TGGAATAGGTTGAAGAATGTAAGTCCTATCTCCCAAGTCAGCAGTGGAATAGGTGAA
Found at i:20784446 original size:561 final size:562
Alignment explanation
Indices: 20783370--20784564 Score: 1777
Period size: 561 Copynumber: 2.1 Consensus size: 562
20783360 AGGTAAATCA
* * *
20783370 TATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAATG
1 TATCTTCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAATG
*
20783434 GAATAGGTTGAAGACTGCGAATCCTATGTCCTTGAGCAGCAGTGGAGTTGGTTGAAAATTACAGA
65 GAATAGGTTGAAGACTGCGAATCCTATGTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
* * * *
20783499 TCTTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGATTCTTATCTTTCCAAGGTAGTA
130 TCTTATCTCCCAAAGCAGTAGTAGAACAGATCGAAGAAGGCGAATCTTATCTTCCCAAGGTAGTA
* * *
20783564 GGGAAGTAGATTTCAGCCACTAGCCTTATCCCTCTGGTCAGTAGTGGAATAGGTTGAAGACTGTA
195 GGGAAGAAGATTTAAGCCACTAGACTTATCCCTCTGGTCAGTAGTGGAATAGGTTGAAGACTGTA
* * * * *
20783629 AGTCCTATCTCCTTAGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCATATCTTCCTGGTCAAC
260 AGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCATATCTCCCTGGCCAAC
20783694 AGTGGAATAGGTTAAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGTGAATCCTAT
325 AGTGGAATAGGTTAAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGTGAATCCTAT
* * * *
20783759 CTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGAGAATCCTGTCTCCCTGAGCAGTAGTGGAGT
390 CTCCCTAGTCACCAGTGGAATAGGTTAAAGATTGAGAATCCTATCTCCCTGACCAGCAGTGGAGT
* * *
20783824 AGGTCGAAAATTACAGAAGTTATCTCCCTAAGCAGTAGTAGAGTTGATCGAAGAAGGCGAATCAT
455 AGGTCGAAAATTACAGAACTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGAAGGCGAATCAT
** * *
20783889 ATTTTCCCAAGGTAGTAGGGAAGAAGGTTTAAGCCACTAGCCT
520 ACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCT
* *
20783932 TATCTTCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTGTCTCCCTGGTCAGCAATGG
1 TATCTTCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATGG
* * *
20783997 AATAGGTTGAAGATTGTGAATCCTATGATCC-TGAGCAGCAGTGGAGTAGGTTGAAATTTACAGA
66 AATAGGTTGAAGACTGCGAATCCTATG-TCCTTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
** * *
20784061 TCTTATCTCTTAAAGCTGTAGTGGAACAGAT-GAAGAAGGCGAATCTTATCTTCCCAAGGTAGTA
130 TCTTATCTCCCAAAGCAGTAGTAGAACAGATCGAAGAAGGCGAATCTTATCTTCCCAAGGTAGTA
* * *
20784125 GGGAAGAAGATTTAAGCCACTAGACTTATCTCTCTGGTCAGTAGTGGATTAGGTTGAAGATTGTA
195 GGGAAGAAGATTTAAGCCACTAGACTTATCCCTCTGGTCAGTAGTGGAATAGGTTGAAGACTGTA
*
20784190 AGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGCCAAC
260 AGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCATATCTCCCTGGCCAAC
* * *
20784255 AGTGGAATTGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTAT
325 AGTGGAATAGGTTAAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGTGAATCCTAT
* * *
20784320 CTCCCTGGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGT
390 CTCCCTAGTCACCAGTGGAATAGGTTAAAGATTGAGAATCCTATCTCCCTGACCAGCAGTGGAGT
* * * * * *
20784385 AGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTGGTGGAGTAGATCGAAGACGGCGAATCTT
455 AGGTCGAAAATTACAGAACTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGAAGGCGAATCAT
20784450 ACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCT
520 ACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCT
* * * * * * ** *
20784493 TGTC-TCCTTCGTGAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAAGTCAGCAGTG
1 TATCTTCC-TGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATG
*
20784557 AAATAGGT
65 GAATAGGT
20784565 GAATCCTATC
Statistics
Matches: 567, Mismatches: 63, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
560 3 0.01
561 422 0.74
562 139 0.25
563 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (562 bp):
TATCTTCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATGG
AATAGGTTGAAGACTGCGAATCCTATGTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
CTTATCTCCCAAAGCAGTAGTAGAACAGATCGAAGAAGGCGAATCTTATCTTCCCAAGGTAGTAG
GGAAGAAGATTTAAGCCACTAGACTTATCCCTCTGGTCAGTAGTGGAATAGGTTGAAGACTGTAA
GTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCATATCTCCCTGGCCAACA
GTGGAATAGGTTAAAGATTGTAAGTCCTATCTCCCTGGTCAGCAATGGAATAGGTGAATCCTATC
TCCCTAGTCACCAGTGGAATAGGTTAAAGATTGAGAATCCTATCTCCCTGACCAGCAGTGGAGTA
GGTCGAAAATTACAGAACTTATCTCCCAAAGCAGTAGTAGAGTAGATCGAAGAAGGCGAATCATA
CCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCT
Found at i:20784750 original size:342 final size:338
Alignment explanation
Indices: 20784059--20785098 Score: 948
Period size: 342 Copynumber: 3.0 Consensus size: 338
20784049 GAAATTTACA
** * * *
20784059 GATCTTATC-TCTTAAAGCTGTAGTGGAACAGATGAAGAAGGCGAATCTTATCTTCCCAAGGTAG
1 GATCTTATCTTCCCAAAGCAGTAGTGGAGCAGATGAAGACGGCGAATCTTATCTTCCCAAGGTAG
* *
20784123 TAGGGAAGAAGATTTAAGCCACTAGACTTATCT-CTCTGGTCAGTAGTGGATTAGGTTGAAGATT
66 TAGGGAAGAAGATGTAAGCCACTAGACTTATCTCCT-TGGTCAGTAGTGGAATAGGTTGAAGATT
*
20784187 GTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGCC
130 GTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGG-T---GA-----A-TCCTATCTCCCTGGTC
*
20784252 AACAGTGGAATTGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAGTGGAATA-G--GT-G
185 AACAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGTAG
* * * ** * **
20784312 ---AATCCTATCTCCCTG-GTCACCAGTGGAATAGGTTGAAGATT-GTGAATCCTATCTCCCTGA
249 ATTAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTACAG-ATCTTATCTCCCAAA
* * * * ***
20784372 CCAGCAGTGGAGTAGGTTGAAAATTAC
312 GCAGTAGTGGAGTAGATTGAAGACGGC
* * *
20784399 AGATCTTATC-TCCCAAAGCAGTGGTGGAGTAGATCGAAGACGGCGAATCTTACCTTCCCAAGGT
1 -GATCTTATCTTCCCAAAGCAGTAGTGGAGCAGAT-GAAGACGGCGAATCTTATCTTCCCAAGGT
* * * * *
20784463 AGTAGGGAAGAAGATGTAAGCCACTAGCCTTGTCTCCTTCGTGAGTAGAGGAATAGGTTGAAGAT
64 AGTAGGGAAGAAGATGTAAGCCACTAGACTTATCTCCTTGGTCAGTAGTGGAATAGGTTGAAGAT
* * * * **
20784528 TGTAAGTCATATCTCCCAAGTCAGCAGTGAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGA
129 TGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAACAGTGGA
* * **
20784593 ATAGGTTGAAGATTGTGAATCCTATCTCTCTGGTCAGTAGTGTTATAGGTTGTAGATTACAAATC
194 ATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGTAGATT---AATC
* *
20784658 CTATCTCCCTGAGCAGCAATGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTA
256 CTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTG
20784723 GAGTAGATTGAAGACGGC
321 GAGTAGATTGAAGACGGC
** * * * ** * ** *
20784741 GATTCTTATCTTCCCATGGTAGCAG-GGACGCAGATTTAAG-CCACTAGCCTTATC-TCCC-TGG
1 GA-TCTTATCTTCCCAAAGCAGTAGTGGA-GCAGA-TGAAGACGGCGAATCTTATCTTCCCAAGG
* * * *** * * **
20784802 TCAGTAGTGGAATAGGTTG-AAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGGAATAGGTTGA
63 T-AGTAG-GGAAGAAGATGTAAGCCACT-AGACTTATCTCCTTGGTCAGTAGTGGAATAGGTTGA
* * * *
20784866 AGATTGTAAGTCCTATCTCCCTGGTCAACTGTGGAATAGGTGAATCCTATCTCCCTGGTCACCAG
125 AGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAACAG
* * * *
20784931 TGGAATAGGTTGAAGGTTATGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTG
190 TGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGTAGA-T-T-
* * * * **
20784996 AATCCTATGTTCCTGAGCAGCAGTGGCGTAGGTTGAAATTTACAGATCTTATCTCTTAAAGCAGT
252 AATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGT
** *
20785061 AGTGGAACAGA-TAAAGACGGC
317 AGTGGAGTAGATTGAAGACGGC
20785082 GAATCTTATCTTCCCAA
1 G-ATCTTATCTTCCCAA
20785099 GGTAGTAGGG
Statistics
Matches: 572, Mismatches: 102, Indels: 50
0.79 0.14 0.07
Matches are distributed among these distances:
332 60 0.10
333 4 0.01
335 2 0.00
336 1 0.00
338 2 0.00
340 3 0.01
341 67 0.12
342 410 0.72
343 21 0.04
344 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (338 bp):
GATCTTATCTTCCCAAAGCAGTAGTGGAGCAGATGAAGACGGCGAATCTTATCTTCCCAAGGTAG
TAGGGAAGAAGATGTAAGCCACTAGACTTATCTCCTTGGTCAGTAGTGGAATAGGTTGAAGATTG
TAAGTCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAATCCTATCTCCCTGGTCAACAGTGGAAT
AGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGTAGATTAATCCTATC
TCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGTA
GATTGAAGACGGC
Found at i:20784919 original size:34 final size:34
Alignment explanation
Indices: 20784876--20784940 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
20784866 AGATTGTAAG
*
20784876 TCCTATCTCCCTGGTCAACTGTGGAATAGGTGAA
1 TCCTATCTCCCTGGTCAACAGTGGAATAGGTGAA
*
20784910 TCCTATCTCCCTGGTCACCAGTGGAATAGGT
1 TCCTATCTCCCTGGTCAACAGTGGAATAGGT
20784941 TGAAGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (34 bp):
TCCTATCTCCCTGGTCAACAGTGGAATAGGTGAA
Found at i:20784964 original size:78 final size:78
Alignment explanation
Indices: 20784835--20784984 Score: 230
Period size: 78 Copynumber: 1.9 Consensus size: 78
20784825 TTCTGAGTCT
* **
20784835 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACTGTGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAACAATGG
20784900 AATAGGTGAATCC
66 AATAGGTGAATCC
* * *
20784913 TATCTCCCTGGTCACCAGTGGAATAGGTTGAAGGTTATGAA-TCCTATCTCCCTGGTCAGCAATG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTAT-AAGTCCTATCTCCCTGGTCAACAATG
20784977 GAATAGGT
65 GAATAGGT
20784985 TGAAGATTGT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
78 63 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (78 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTATAAGTCCTATCTCCCTGGTCAACAATGG
AATAGGTGAATCC
Found at i:20785048 original size:298 final size:296
Alignment explanation
Indices: 20784195--20785329 Score: 1009
Period size: 298 Copynumber: 3.8 Consensus size: 296
20784185 TTGTAAGTCC
* * * *
20784195 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGCCAACAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGG
* * *
20784260 AATTGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCC
66 AATAGGTTGAAGATTGTAACTCCTATCTCCCTGGTCAACAGTGGAATAGGTGAATCCTATCTCCC
* ** * *
20784325 TGGTCACCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTT
131 TGGTCACCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTT
* ** * * *
20784390 GAAAATTACAGATCTTATCTCCCAAAGCAGTGGTGGAGTAGATCGAAGACGGCGAATCTTACCTT
196 GAAAATTACAGATCCTATCTCCCAAAGCAGCAGTGGAGTAGATTGAAGACGACG-ATCTTATCTT
* *
20784455 CCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCT
260 CCCAAGGTAGTAGGG-AGCAGATTTAAGCCACTAGCCT
* * * * * * * * ** * *
20784493 TGTCTCCTTCGTGAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCAAGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGG
** * * ** * * * * * *
20784558 AATAGG-TG-A-ATCCTATCTCCCT-TGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATC
66 AATAGGTTGAAGATTGTAACT-CCTATCTCCCTGGT-CAACA-GTGGAATA-GGTGAATCCTATC
* ** ** * ** *
20784619 TCTCTGGTCAGTAGTGTTATAGGTTGTAGATTACAAATCCTATCTCCCTGAG-CAGCAATGGAGT
127 TCCCTGGTCACCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTG-GTCAGCAATGGAAT
* * * *
20784683 AGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTAGAGTAGATTGAAGACGGCGATTCTT
191 AGGTTGAAAATTACAGATCCTATCTCCCAAAGCAGCAGTGGAGTAGATTGAAGACGACGA-TCTT
* *
20784748 ATCTTCCCATGGTAGCAGGGACGCAGATTTAAGCCACTAGCCT
255 ATCTTCCCAAGGTAGTAGGGA-GCAGATTTAAGCCACTAGCCT
20784791 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGG
* *
20784856 AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACTGTGGAATAGGTGAATCCTATCTCCC
66 AATAGGTTGAAGATTGTAACTCCTATCTCCCTGGTCAACAGTGGAATAGGTGAATCCTATCTCCC
*
20784921 TGGTCACCAGTGGAATAGGTTGAAGGTTATGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTT
131 TGGTCACCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTT
* ** * * ** * * **
20784986 GAAGATT-GTGAATCCTATGTTCCTGAGCAGCAGTGGCGTAGGTTGAA-ATTTACAGATCTTATC
196 GAAAATTACAG-ATCCTATCTCCCAAAGCAGCAGTGGAGTAGATTGAAGA-CGAC-GATCTTATC
** * * * * ** * **
20785049 -TCTTAAAGCAGTAGTGGAACAGA-TAAAGACGGCGAATCT
258 TTCCCAAGGTAGTAG-GGAGCAGATTTAAG-CCACTAGCCT
* * * * *** * * **
20785088 TATCTTCCCAAGGT-AGTAG-GGAAGAAGATTTAAGCCACT-AGCCTTATCTCTCTGGTCAGTAG
1 TATC-TCCC-TGGTCAGTAGTGGAA-TAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAACAG
* * * * *
20785150 TGGAATAGGTTGAAGATTTTAACTCATATCTCCCAGGTCAGCAGTGAAATAGGTGAATCCTATCT
63 TGGAATAGGTTGAAGATTGTAACTCCTATCTCCCTGGTCAACAGTGGAATAGGTGAATCCTATCT
* ** * * * *
20785215 CCCTTGTCAGTAGTGGAATAGGATGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGTAATAG
128 CCCTGGTCACCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAATGGAATAG
* * ** *
20785280 GTTGAAGATTA-TGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAA
193 GTTGAAAATTACAG-ATCCTATCTCCCAAAGCAGCAGTGGAGTAGATTGAA
20785330 AATTATAGAT
Statistics
Matches: 675, Mismatches: 141, Indels: 43
0.79 0.16 0.05
Matches are distributed among these distances:
295 11 0.02
296 10 0.01
297 218 0.32
298 406 0.60
299 13 0.02
300 6 0.01
301 11 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (296 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGG
AATAGGTTGAAGATTGTAACTCCTATCTCCCTGGTCAACAGTGGAATAGGTGAATCCTATCTCCC
TGGTCACCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTT
GAAAATTACAGATCCTATCTCCCAAAGCAGCAGTGGAGTAGATTGAAGACGACGATCTTATCTTC
CCAAGGTAGTAGGGAGCAGATTTAAGCCACTAGCCT
Found at i:20785224 original size:34 final size:35
Alignment explanation
Indices: 20785176--20785241 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 35
20785166 TTTTAACTCA
20785176 TATCTCCCAGGTCAGCAGTGAAATAGG-TGAATCC
1 TATCTCCCAGGTCAGCAGTGAAATAGGATGAATCC
** * *
20785210 TATCTCCCTTGTCAGTAGTGGAATAGGATGAA
1 TATCTCCCAGGTCAGCAGTGAAATAGGATGAA
20785242 GATTGTGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
34 23 0.85
35 4 0.15
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (35 bp):
TATCTCCCAGGTCAGCAGTGAAATAGGATGAATCC
Found at i:20785261 original size:78 final size:78
Alignment explanation
Indices: 20785132--20785281 Score: 221
Period size: 78 Copynumber: 1.9 Consensus size: 78
20785122 CCACTAGCCT
* * *
20785132 TATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAACTCATATCTCCCAGGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGATGAAGATTTGAACTCATATCTCCCAGGTCAGCAGTGA
20785197 AATAGGTGAATCC
66 AATAGGTGAATCC
* * *
20785210 TATCTCCCTTGTCAGTAGTGGAATAGGATGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGATGAAGATT-TGAACTCATATCTCCCAGGTCAGCAGTG
*
20785274 TAATAGGT
65 AAATAGGT
20785282 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
78 61 0.95
79 3 0.05
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGATGAAGATTTGAACTCATATCTCCCAGGTCAGCAGTGA
AATAGGTGAATCC
Found at i:20785623 original size:342 final size:338
Alignment explanation
Indices: 20784791--20785846 Score: 1045
Period size: 342 Copynumber: 3.1 Consensus size: 338
20784781 CCACTAGCCT
* *
20784791 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTCTGAGTCTTATCTCCCTGGTCAACAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCATATCTCCCTGGTCAACAGTGG
* * * * *
20784856 AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACTGTGGAATAGGTGAATCCTATCTCCC
66 AATAGGTTGAAGATTGTAAGTCC-ATCTCCTTGGTCAGCAGTGGAATAGGTGGATTCTATCTCCC
* * * *
20784921 TGGTCACCAGTGGAATAGGTTGAAGGTTATGAATCCTATCTCCCTG-GTCAGCAATGGAATAGGT
130 TGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGAG-CAGCAGTGGAGTAGGT
* * * * * * * * * **
20784985 TGAAGATTGT-GAATCCTATGTTCCTGAGCAGCAGTGGCGTAGGTTGAA-ATTTAC-AGATCTTA
194 TGAAAATTATAG-ATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGA-TGGCGAG-TCTTA
* ** * ** *
20785047 TCTCTTAAAGCAG-TAGTGGAA-CAGATA-AAGACGGCGAATCTTATCTTCCCAAGGT-AGTAG-
256 TCT-TT--CGCAGATAG-GGAAGCAGATATAAG-CCACTAGCCTTATC-TCCC-TGGTCAGTAGT
* * * **** * *
20785107 GGAAGAAGATTTAAGCCACT-AGCCT
314 GGAA-TAGGTTGAAGATTGTAAGTCG
* * * * * * * *
20785132 TATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAACTCATATCTCCCAGGTCAGCAGTGA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCATATCTCCCTGGTCAACAGTGG
** *
20785197 AATAGG-TG-A-ATCCT-A-T-C-TC-CCTT-GTCAGTAGTGGAATAGGATGAAGATTGTGAATC
66 AATAGGTTGAAGATTGTAAGTCCATCTCCTTGGTCAGCAGTGGAATAGG-TG--GA---T---T-
*
20785253 CTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATTATGAATCCTATCTCCCTGAGCAGCAGTG
121 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGAGCAGCAGTG
*
20785318 GAGTAGGTTGAAAATTATAGATCCAATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGAG
186 GAGTAGGTTGAAAATTATAGATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGAG
*
20785383 TCTTATCTTTCGCTGTTTATAGGGAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAG
251 TCTTATCTTTCGCAG---ATAGGGAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAG
20785448 TGGAATAGGTTGAAGATTGTAAGTCG
313 TGGAATAGGTTGAAGATTGTAAGTCG
* * *
20785474 TATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCGTATCTCCCTGGTCAACAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCATATCTCCCTGGTCAACAGTGG
* *
20785539 AGTAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCTGCAGTGGAATAGGTGGATTCTATCTCCC
66 AATAGGTTGAAGATTGTAAGTCC-ATCTCCTTGGTCAGCAGTGGAATAGGTGGATTCTATCTCCC
** * * *
20785604 TGGTTGGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAGAAGGTT
130 TGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTT
* * * * * * *
20785669 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCATATCGAAGACGGCGATTCTTATC-T
195 GAAAATTATAGATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGAGTCTTATCTT
* * *
20785733 TCCCAAGGCAGTAGGCAAGCATATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAG
260 TCGC-A-G-A-TAGGGAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAG
20785798 GTTGAAGATTGTAAGTCG
321 GTTGAAGATTGTAAGTCG
20785816 TATCTCCCTGGTCAGCAGTGGAATAGGTTGA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGA
20785847 CGATNNNNNN
Statistics
Matches: 595, Mismatches: 84, Indels: 71
0.79 0.11 0.09
Matches are distributed among these distances:
331 14 0.02
332 5 0.01
333 2 0.00
334 1 0.00
335 1 0.00
336 1 0.00
337 2 0.00
338 6 0.01
339 1 0.00
340 7 0.01
341 201 0.34
342 314 0.53
343 7 0.01
344 1 0.00
345 3 0.01
346 2 0.00
347 1 0.00
348 1 0.00
349 2 0.00
350 2 0.00
351 6 0.01
352 15 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (338 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTCTGAGTCATATCTCCCTGGTCAACAGTGG
AATAGGTTGAAGATTGTAAGTCCATCTCCTTGGTCAGCAGTGGAATAGGTGGATTCTATCTCCCT
GGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTG
AAAATTATAGATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGAGTCTTATCTTT
CGCAGATAGGGAAGCAGATATAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGA
AGATTGTAAGTCG
Found at i:20785658 original size:78 final size:78
Alignment explanation
Indices: 20785518--20785661 Score: 184
Period size: 78 Copynumber: 1.8 Consensus size: 78
20785508 TTGTGAGTCG
* ** *
20785518 TATCTCCCTGGTCAACAGTGGAGTAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCTGCAGTGG
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTAAGTCAGCAGTGG
20785583 AATAGGTGGATTC
66 AATAGGTGGATTC
*** *
20785596 TATCTCCCTGGTTGGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTAAG-CAGCAGT
1 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAGTCCAATCT-CCTAAGTCAGCAGT
20785659 GGA
64 GGA
20785662 GAAGGTTGAA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
78 50 0.89
79 6 0.11
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (78 bp):
TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTAAGTCAGCAGTGG
AATAGGTGGATTC
Found at i:20785687 original size:298 final size:293
Alignment explanation
Indices: 20784833--20785688 Score: 788
Period size: 297 Copynumber: 2.9 Consensus size: 293
20784823 GATTCTGAGT
** * * * * *
20784833 CTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAACTGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAACTCATATCTCCCAGGTCAGCAGT
* * * * * *
20784898 GGAATAGGTGAATCCTATCTCCCTGGTCACCAGTGGAATAGGTTGAAGGTTATGAATCCTATCTC
66 GAAATAGGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGATGAAGATTGTGAATCCAATCTC
* * * * **
20784963 CCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAATCCTATGTTCCTGAGCAGCAGTGGCGTAGG
131 CCTGGTCAGCAGTGGAATAGGTTG-AG--TAT--ATCCTATCTCCCTGAGCAGCAGTGGAATAGG
* * ** * * * * *
20785028 TTGAAATTTACAGATCTTATCT-CTTAAAGCAGTAGTGGA-ACAGAT--AAAGACGGCGAATCTT
191 TTGAAAATTATAGATCCAATCTCCCT-AAGCAGCAGTGGAGA-AGATCGAAA-ATGACGAGTCTT
* * * *
20785089 ATC-TTCCCAAG-GTAGTAGGGAAGAAGATTTAAGCCACTAGC
253 ATCTTTCGC-TGTTTA-TAGGGAAGAAGATATAAGCCACTAGC
* *
20785130 CTTATCTCTCTGGTCAGTAGTGGAATAGGTTGAAGATTTTAACTCATATCTCCCAGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAACTCATATCTCCCAGGTCAGCAGT
* ** *
20785195 GAAATAGGTGAATCCTATCTCCCTTGTCAGTAGTGGAATAGGATGAAGATTGTGAATCCTATCTC
66 GAAATAGGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGATGAAGATTGTGAATCCAATCTC
* *
20785260 CCTGGTCAGCAGTGTAATAGGTTGAAGATTATGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGG
131 CCTGGTCAGCAGTGGAATAGGTTG-AG--TAT--ATCCTATCTCCCTGAGCAGCAGTGGAATAGG
* * * *
20785325 TTGAAAATTATAGATCCAATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCGAGTCTTATC
191 TTGAAAATTATAGATCCAATCTCCCTAAGCAGCAGTGGAGAAGATCGAAAATGACGAGTCTTATC
*
20785390 TTTCGCTGTTTATAGGGAAGCAGATATAAGCCACTAGC
256 TTTCGCTGTTTATAGGGAAGAAGATATAAGCCACTAGC
* * *
20785428 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCGTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAACTCATATCTCCCAGGTCAGCAGT
* * * *
20785493 GGAATAGGTTGACGATTGTGAGTCGTATCTCCCTGGTCAACAGTGGAGTAGGTTGAAGATTGT-A
66 -GAA-A---T-A-G---GTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGATGAAGATTGTGA
* * **
20785557 AGTCCAATCTCCTTGGTCTGCAGTGGAATAGG-TG-G-AT-T-CTATCTCCCTG-GTTGGCAGTG
121 A-TCCAATCTCCCTGGTCAGCAGTGGAATAGGTTGAGTATATCCTATCTCCCTGAG-CAGCAGTG
* * * * * *
20785616 GAATAGGTTGAAGATTGT-GAATCCTATCTCCCTAAGCAGCAGTGGAGAAGGTTGAAAATTAC-A
184 GAATAGGTTGAAAATTATAG-ATCCAATCTCCCTAAGCAGCAGTGGAGAAGATCGAAAATGACGA
20785679 GATCTTATCT
248 G-TCTTATCT
20785689 CCCTAAGCAG
Statistics
Matches: 474, Mismatches: 65, Indels: 39
0.82 0.11 0.07
Matches are distributed among these distances:
297 212 0.45
298 174 0.37
299 12 0.03
300 1 0.00
302 2 0.00
303 1 0.00
304 1 0.00
305 2 0.00
307 4 0.01
308 65 0.14
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (293 bp):
CTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAACTCATATCTCCCAGGTCAGCAGT
GAAATAGGTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGATGAAGATTGTGAATCCAATCTC
CCTGGTCAGCAGTGGAATAGGTTGAGTATATCCTATCTCCCTGAGCAGCAGTGGAATAGGTTGAA
AATTATAGATCCAATCTCCCTAAGCAGCAGTGGAGAAGATCGAAAATGACGAGTCTTATCTTTCG
CTGTTTATAGGGAAGAAGATATAAGCCACTAGC
Found at i:20786174 original size:44 final size:43
Alignment explanation
Indices: 20786126--20787317 Score: 177
Period size: 44 Copynumber: 28.0 Consensus size: 43
20786116 TATCTCTTTC
* * *
20786126 GTCAGTAGAGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAA-TCCTATCTCCCTG
* * * *
20786170 GTCAGCAGTGAAATA----G--G--TG-AATCCTTTTTCCCTT
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAATCCTATCTCCCTG
* * *
20786204 GTCAGTAGTGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGT-AATCCTATCTCCCTG
* *
20786248 GTCAGCAGTGTAAA-AGGTTGAAGATTGTGAATCCTATCTCCCTT
1 GTCAGTAGTG-AAATAGGTTGAAGATTGT-AATCCTATCTCCCTG
* * *
20786292 GTCAATAGTGAAATAGGTTGAAAATTGTGAATCCTAGCTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGT-AATCCTATCTCCCTG
* * * * * ** *** *
20786336 AG-CAGAAGTGGAGTAGGTTAAAAATTACAGAAGTTATCTCCCTAA
1 -GTCAGTAGTGAAATAGGTTGAAGATTGTA-ATCCTATCTCCCT-G
* * ** * * *
20786381 G-CAGTAGT-AAAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAG
1 GTCAGTAGTGAAA-TAGGTTGAAGATTG-TAATCCTATC-TCCC-TG
* ** * * **** * *
20786426 GT-AGTAGGGAAGCAGATTTAAGCCACT-AGCCTTATCTTCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAATCC-TATCTCCCTG
* * * * *
20786468 GTCAGTAGTGGAATAGGTTCACGATTGTAAGTTCTATCTCCCTA
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAA-TCCTATCTCCCTG
* * * *
20786512 GTCAGCAGTGGAATAGGCTGAAGATTGTGAATCCTATATCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGT-AATCCTATCTCCCTG
* * * * ** *
20786556 AG-CAGTAGTGGAGTAGGTTGCAA-AATATAGATATTATCTCCCTAA
1 -GTCAGTAGTGAAATAGGTTG-AAGATTGTA-ATCCTATCTCCCT-G
** * ** ** * * * *
20786601 GT-AGTAGT-AGAGCAGATCAAAGACGGCGATTCTTATCTTCCCAAG
1 GTCAGTAGTGA-AATAGGTTGAAGATTG-TAATCCTATC-TCCC-TG
* * * * **** * *
20786646 GT-AGTAGGGAAGTAGATTTAAGCCACT-AGCTTTATCTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAATC-CTATCTCCCTG
*
20786688 GTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAA-TCCTATCTCCCTG
* ** *
20786732 GTCAGCAGTGGGATAGGTTGAAGATTGTAAGTACTATCTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAA-TCCTATCTCCCTG
* * * *
20786776 GTCAGCAATGGAATA----G--G--TG-AATCATATCTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAATCCTATCTCCCTG
* * * *
20786810 GTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGT-AATCCTATCTCCCTG
* * * * * * * *
20786854 CTCAGCAATGGAATAGGTTGAAGACTGTGAATTCTATGTCCTTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGT-AATCCTATCTCCCTG
* * * * ** * *
20786898 AG-CAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCT-CCAG
1 -GTCAGTAGTGAAATAGGTTGAAGATTGTA-ATCCTATCTCCCTG
* ** * * ** * * * *
20786941 AAG-CAGTAGTGGAGCAGATCGAAGACGGCGATTCTTATCTGCCCAAG
1 --GTCAGTAGTGAAATAGGTTGAAGATTG-TAATCCTATCT-CCC-TG
* ** * * *** ** *
20786988 GT-AGTAGGGAAGCAGATTTAAGACACT-GGCCTTATATCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAATCC-TATCTCCCTG
* ** * * *
20787030 TTCTTTAGTGGAATAGGTTGAAGATTTTAAGTCTTATCTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAA-TCCTATCTCCCTG
**
20787074 GTCAGTAGTGAAATA----G--G--TG-AATCCTATCTCAATG
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAATCCTATCTCCCTG
* ** * * *
20787108 GTCAGCAGTGGGATAGGTTAAAGATTGTGAGTCTTATCTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGT-AATCCTATCTCCCTG
** * *
20787152 GTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAA-TCCTATCTCCCTG
* * * *
20787196 GTCAGCAGTGGAATA----G--G--TG-AATCATATTTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGTAATCCTATCTCCCTG
* * * *
20787230 GTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGT-AATCCTATCTCCCTG
* * * * *
20787274 GTCAGCAATGGAATAGGTTGAAGACTGTGAATCCTATGTCCCTG
1 GTCAGTAGTGAAATAGGTTGAAGATTGT-AATCCTATCTCCCTG
20787318 AGCAGCAGTG
Statistics
Matches: 830, Mismatches: 234, Indels: 168
0.67 0.19 0.14
Matches are distributed among these distances:
34 90 0.11
35 8 0.01
36 7 0.01
38 7 0.01
40 8 0.01
42 15 0.02
43 70 0.08
44 546 0.66
45 72 0.09
46 5 0.01
47 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (43 bp):
GTCAGTAGTGAAATAGGTTGAAGATTGTAATCCTATCTCCCTG
Found at i:20786354 original size:88 final size:88
Alignment explanation
Indices: 20786186--20786347 Score: 218
Period size: 88 Copynumber: 1.8 Consensus size: 88
20786176 AGTGAAATAG
* * * * * * *
20786186 GTGAATCCTTTTTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTC
1 GTGAATCCTATCTCCCTTGTCAATAGTGAAATAGGTTGAAAATTATGAATCCTAGCTCCCTGGTC
* *
20786251 AGCAGTGTAAAAGGTTGAAGATT
66 AGAAGTGGAAAAGGTTGAAGATT
*
20786274 GTGAATCCTATCTCCCTTGTCAATAGTGAAATAGGTTGAAAATTGTGAATCCTAGCTCCCTGAG-
1 GTGAATCCTATCTCCCTTGTCAATAGTGAAATAGGTTGAAAATTATGAATCCTAGCTCCCTG-GT
20786338 CAGAAGTGGA
65 CAGAAGTGGA
20786348 GTAGGTTAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
88 62 0.98
89 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (88 bp):
GTGAATCCTATCTCCCTTGTCAATAGTGAAATAGGTTGAAAATTATGAATCCTAGCTCCCTGGTC
AGAAGTGGAAAAGGTTGAAGATT
Found at i:20786626 original size:220 final size:220
Alignment explanation
Indices: 20786238--20786759 Score: 753
Period size: 220 Copynumber: 2.4 Consensus size: 220
20786228 TTATGAGTCC
* * * * **
20786238 TATCTCCCTGGTCAGCAGTGTAAAAGGTTGAAGATTGTGAA-TCCTATCTCCCTTGTCAATAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTAGTCAGCAGTG
* * *
20786302 AAATAGGTTGAAAATTGTGAATCCTAGCTCCCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAGA
65 GAATAGGTTGAAGATTGTGAATCCTAGATCCCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAGA
* *
20786367 AGTTATCTCCCTAAGCAGTAGTAAAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTA
130 AGTTATCTCCCTAAGCAGTAGTAAAGCAGATCAAAGACGGCGAATCTTATCTTCCCAAGGTAGTA
20786432 GGGAAGCAGATTTAAGCCACTAGCCT
195 GGGAAGCAGATTTAAGCCACTAGCCT
* * * *
20786458 TATCTTCCTGGTCAGTAGTGGAATAGGTTCACGATTGTAAGTTCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
* * * * *
20786523 AATAGGCTGAAGATTGTGAATCCTATATCCCTGAGCAGTAGTGGAGTAGGTTGCAAAA-TATAGA
66 AATAGGTTGAAGATTGTGAATCCTAGATCCCTGAGCAGAAGTGGAGTAGGTT-AAAAATTACAGA
* * *
20786587 TA-TTATCTCCCTAAGTAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATCTTCCCAAGGTAGT
130 -AGTTATCTCCCTAAGCAGTAGTAAAGCAGATCAAAGACGGCGAATCTTATCTTCCCAAGGTAGT
* *
20786651 AGGGAAGTAGATTTAAGCCACTAGCTT
194 AGGGAAGCAGATTTAAGCCACTAGCCT
*
20786678 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
*
20786743 GATAGGTTGAAGATTGT
66 AATAGGTTGAAGATTGT
20786760 AAGTACTATC
Statistics
Matches: 267, Mismatches: 32, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
219 2 0.01
220 260 0.97
221 5 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (220 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
AATAGGTTGAAGATTGTGAATCCTAGATCCCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAGAA
GTTATCTCCCTAAGCAGTAGTAAAGCAGATCAAAGACGGCGAATCTTATCTTCCCAAGGTAGTAG
GGAAGCAGATTTAAGCCACTAGCCT
Found at i:20786851 original size:78 final size:78
Alignment explanation
Indices: 20786722--20786871 Score: 241
Period size: 78 Copynumber: 1.9 Consensus size: 78
20786712 TTGTAAGTCC
*
20786722 TATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGG
1 TATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTAAGTACTATCTCCCTGCTCAGCAATGG
20786787 AATAGGTGAATCA
66 AATAGGTGAATCA
* *
20786800 TATCTCCCTGGTCAGCAGT-GGACTTGGTTGAAGATTGTGAA-TCCTATCTCCCTGCTCAGCAAT
1 TATCTCCCTGGTCAGCAGTGGGA-TAGGTTGAAGATTGT-AAGTACTATCTCCCTGCTCAGCAAT
20786863 GGAATAGGT
64 GGAATAGGT
20786872 TGAAGACTGT
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
77 3 0.04
78 62 0.93
79 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (78 bp):
TATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTAAGTACTATCTCCCTGCTCAGCAATGG
AATAGGTGAATCA
Found at i:20787070 original size:562 final size:556
Alignment explanation
Indices: 20786007--20787094 Score: 1384
Period size: 562 Copynumber: 1.9 Consensus size: 556
20785997 CCAGTACACT
* * *
20786007 TAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCT
1 TAGGTTGAAAATTACAGATATTATCTCCCAAAGCAGTAGTAGAGCAGATCAAAGACGACGAATCT
**
20786072 TACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCTTTCGTCAGTAGAGG
66 TACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCCCTCGTCAGTAGAGG
20786137 AATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTTTTTCCC
131 AATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTTTTTCCC
* * * * *
20786202 TTGTCAGTAGTGGAATAGGTTGAAGATTATGAGTCCTATCTCCCTGGTCAGCAGTGTAAAAGGTT
196 TGGTCAGCAATGGAATAGGTT--AG--TA-GAGTCATATCTCCCTGGTCAGCAGTGGAAAAGGTT
* * *
20786267 GAAGATTGTGAATCCTATCTCCCTTGTCAATAGTGAAATAGGTTGAAAATTGTGAATCCTAGCTC
256 GAAGATTGTGAATCCTATCTCCCTTGTCAACAATGAAATAGGTTGAAAACTGTGAATCCTAGCTC
* ** *
20786332 CCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAGAAGTTATCTCCCTAAGCAGTAGTAAAGTAGA
321 CCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAGAACTTATCTCCAGAAGCAGTAGTAAAGCAGA
* * *
20786397 TCGAAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATC
386 TCGAAGACGGCGAATCTTATCTGCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTAGCCTTATA
* * *
20786462 TTCCTGGTCAGTAGTGGAATAGGTTCACGATTGTAAGTTCTATCTCCCTAGTCAGCAGTGGAATA
451 TCCCTGGTCAGTAGTGGAATAGGTTCAAGATTGTAAGTTCTATCTCCCTAGTCAGCAGTGAAATA
20786527 GGCTGAAGATTGTGAATCCTATATCCCTGAGCAGTAGTGGAG
516 GG-TGAAGATTGTGAATCCTATATCCCTGAGCAGTAGTGGAG
* * * * *
20786569 TAGGTTGCAAAA-TATAGATATTATCTCCCTAAGTAGTAGTAGAGCAGATCAAAGACGGCGATTC
1 TAGGTTG-AAAATTACAGATATTATCTCCCAAAGCAGTAGTAGAGCAGATCAAAGACGACGAATC
* * * * * *
20786633 TTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAAGCCACTAGCTTTATCTCCCTGGTCAGTAGTG
65 TTACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCCCTCGTCAGTAGAG
* ** **
20786698 GAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTAAG
130 GAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGG-TG-A-ATCCT---
*
20786763 TACTATCTCCCTGGTCAGCAATGGAATAGG-T-G-A-A-TCATATCTCCCTGGTCAGCAGTGGAC
189 T--T-T-TCCCTGGTCAGCAATGGAATAGGTTAGTAGAGTCATATCTCCCTGGTCAGCAGTGGAA
** * * * *
20786823 TTGGTTGAAGATTGTGAATCCTATCTCCC-TGCTCAGCAATGGAATAGGTTGAAGACTGTGAATT
250 AAGGTTGAAGATTGTGAATCCTATCTCCCTTG-TCAACAATGAAATAGGTTGAAAACTGTGAATC
* * * *
20786887 CTATG-TCCTTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCAGAAGCAGTAGT
314 CTA-GCTCCCTGAGCAGAAGTGGAGTAGGTTAAAAATTACAGAACTTATCTCCAGAAGCAGTAGT
** * *
20786951 GGAGCAGATCGAAGACGGCGATTCTTATCTGCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTG
378 AAAGCAGATCGAAGACGGCGAATCTTATCTGCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTA
* ** * * * *
20787016 GCCTTATATCCCTGTTCTTTAGTGGAATAGGTTGAAGATTTTAAG-TCTTATCTCCCTGGTCAGT
443 GCCTTATATCCCTGGTCAGTAGTGGAATAGGTTCAAGATTGTAAGTTC-TATCTCCCTAGTCAGC
20787080 AGTGAAATAGGTGAA
507 AGTGAAATAGGTGAA
20787095 TCCTATCTCA
Statistics
Matches: 451, Mismatches: 61, Indels: 29
0.83 0.11 0.05
Matches are distributed among these distances:
561 8 0.02
562 405 0.90
563 8 0.02
564 1 0.00
565 4 0.01
568 2 0.00
570 1 0.00
571 2 0.00
572 20 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (556 bp):
TAGGTTGAAAATTACAGATATTATCTCCCAAAGCAGTAGTAGAGCAGATCAAAGACGACGAATCT
TACCTTCCCAAGGTAGTAGGGAAGAAGATGTAAGCCACTAGCCTTATCTCCCTCGTCAGTAGAGG
AATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTTTTTCCC
TGGTCAGCAATGGAATAGGTTAGTAGAGTCATATCTCCCTGGTCAGCAGTGGAAAAGGTTGAAGA
TTGTGAATCCTATCTCCCTTGTCAACAATGAAATAGGTTGAAAACTGTGAATCCTAGCTCCCTGA
GCAGAAGTGGAGTAGGTTAAAAATTACAGAACTTATCTCCAGAAGCAGTAGTAAAGCAGATCGAA
GACGGCGAATCTTATCTGCCCAAGGTAGTAGGGAAGCAGATTTAAGACACTAGCCTTATATCCCT
GGTCAGTAGTGGAATAGGTTCAAGATTGTAAGTTCTATCTCCCTAGTCAGCAGTGAAATAGGTGA
AGATTGTGAATCCTATATCCCTGAGCAGTAGTGGAG
Found at i:20787148 original size:342 final size:338
Alignment explanation
Indices: 20786456--20787213 Score: 904
Period size: 342 Copynumber: 2.2 Consensus size: 338
20786446 AGCCACTAGC
* * * * *
20786456 CTTATCTTCCTGGTCAGTAGTGGAATAGGTTCACGATTGTAAGTTCTATCTCCCTAGTCAGCAGT
1 CTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCT-GTCAGCAGT
* * * *
20786521 GGAATAGGCTGAAGATTGTGAATCCTATATCCCTGAGCAGTAGTGGAGTAGGTTGCAAAATATAG
65 GGAATAGGTTGAAGACTGTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAAATACAG
** * *
20786586 ATATTATCTCCCTAAGTAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATCTTCCCAAGGTAGT
130 ATATTATCTCCAGAAGCAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATCTGCCCAAGGTAGT
* * * *
20786651 AGGGAAGTAGATTTAAGCCACTAGCTTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT
195 AGGGAAGCAGATTTAAGACACTAGCCTTATATCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT
* * **
20786716 AAGTCCTATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAG
260 AAGTCCTATCTCCCTGGTCAGCAGT-GGATA-GAT-AAGAGTGTAAGTACTATCTCAATGGTCAG
20786781 CAATGGAATAGGTGAAT
322 CAATGGAATAGGTGAAT
* * * * *
20786798 CATATCTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAA-TCCTATCTCCCTGCTCAGCAA
1 CTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTACTATCTCCCTG-TCAGCAG
* * *
20786862 TGGAATAGGTTGAAGACTGTGAATTCTATGTCCTTGAGCAGCAGTGGAGTAGGTTG-AAAATTAC
64 TGGAATAGGTTGAAGACTGTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAAA-TAC
* * *
20786926 AGATCTTATCTCCAGAAGCAGTAGTGGAGCAGATCGAAGACGGCGATTCTTATCTGCCCAAGGTA
128 AGATATTATCTCCAGAAGCAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATCTGCCCAAGGTA
* * **
20786991 GTAGGGAAGCAGATTTAAGACACTGGCCTTATATCCCTGTTCTTTAGTGGAATAGGTTGAAGATT
193 GTAGGGAAGCAGATTTAAGACACTAGCCTTATATCCCTGGTCAGTAGTGGAATAGGTTGAAGATT
* * * *
20787056 TTAAGTCTTATCTCCCTGGTCAGTAGT-GA-A-AT-AG-GTG-AA-TCCTATCTCAATGGTCAGC
258 GTAAGTCCTATCTCCCTGGTCAGCAGTGGATAGATAAGAGTGTAAGTACTATCTCAATGGTCAGC
* *
20787114 AGTGGGATAGGTTAAAGATTGTGAGT
323 AAT-GGA-A---T--AG---GTGAAT
*
20787140 CTTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAGT
1 CTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCT-GTCAGCAGT
20787205 GGAATAGGT
65 GGAATAGGT
20787214 GAATCATATT
Statistics
Matches: 354, Mismatches: 47, Indels: 30
0.82 0.11 0.07
Matches are distributed among these distances:
332 18 0.05
333 5 0.01
334 3 0.01
335 2 0.01
337 2 0.01
339 3 0.01
340 2 0.01
341 7 0.02
342 309 0.87
343 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (338 bp):
CTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGTCAGCAGTG
GAATAGGTTGAAGACTGTGAATCCTATATCCCTGAGCAGCAGTGGAGTAGGTTGCAAAATACAGA
TATTATCTCCAGAAGCAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATCTGCCCAAGGTAGTA
GGGAAGCAGATTTAAGACACTAGCCTTATATCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTA
AGTCCTATCTCCCTGGTCAGCAGTGGATAGATAAGAGTGTAAGTACTATCTCAATGGTCAGCAAT
GGAATAGGTGAAT
Found at i:20787193 original size:122 final size:122
Alignment explanation
Indices: 20787036--20787327 Score: 376
Period size: 122 Copynumber: 2.4 Consensus size: 122
20787026 CCTGTTCTTT
* * *
20787036 AGTGGAATAGGTTGAAGATTTTAAGTCTTATCTCCCTGGTCAGTAGTGAAATAGGTGAATCCTAT
1 AGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGAAATAGGTGAATCATAT
* *
20787101 CTCAATGGTCAGCAGTGGGA-TAGGTTAAAGATTGTGAGTCTTATCTCCCTGGTCAAC
66 CTCAATGGTCAGCAGT-GGACTAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAAC
*
20787158 AGTGGAATAGGTTGAAGATTGTAAGTAC-TATCTCCCTGGTCAGCAGTGGAATAGGTGAATCATA
1 AGTGGAATAGGTTGAAGATTGTAAGT-CTTATCTCCCTGGTCAGCAGTGAAATAGGTGAATCATA
* ** * * *
20787222 TTTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGC
65 TCTCAATGGTCAGCAGTGGACTAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAAC
* * * *
20787280 AATGGAATAGGTTGAAGACTGTGAA-TCCTATGTCCCTGAG-CAGCAGTG
1 AGTGGAATAGGTTGAAGATTGT-AAGTCTTATCTCCCTG-GTCAGCAGTG
20787328 GAGTAGGTTA
Statistics
Matches: 150, Mismatches: 15, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
121 4 0.03
122 142 0.95
123 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (122 bp):
AGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTGGTCAGCAGTGAAATAGGTGAATCATAT
CTCAATGGTCAGCAGTGGACTAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAAC
Found at i:20787228 original size:78 final size:78
Alignment explanation
Indices: 20787146--20787291 Score: 231
Period size: 78 Copynumber: 1.9 Consensus size: 78
20787136 GAGTCTTATC
*
20787146 TCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAGTACTATCTCCCTGGTCAGCAGTGGAAT
1 TCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAA-TACTATCTCCCTGGTCAGCAATGGAAT
20787210 AGGTGAATCATATT
65 AGGTGAATCATATT
* * * *
20787224 TCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGGAATA
1 TCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATACTATCTCCCTGGTCAGCAATGGAATA
20787289 GGT
66 GGT
20787292 TGAAGACTGT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 60 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (78 bp):
TCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATACTATCTCCCTGGTCAGCAATGGAATA
GGTGAATCATATT
Found at i:20787324 original size:44 final size:44
Alignment explanation
Indices: 20787212--20787336 Score: 162
Period size: 44 Copynumber: 2.8 Consensus size: 44
20787202 AGTGGAATAG
* * * * *
20787212 GTGAATCATATTTCCCTGGTCAGCAGTGGACTTGGTTGAAGATT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACT
*
20787256 GTGAATCCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACT
1 GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACT
* *
20787300 GTGAATCCTATGTCCCTGAG-CAGCAGTGGAGTAGGTT
1 GTGAATCCTATCTCCCTG-GTCAGCAGTGGAATAGGTT
20787337 AAAAATTATA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
44 70 0.99
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (44 bp):
GTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACT
Found at i:20787537 original size:44 final size:44
Alignment explanation
Indices: 20787487--20788617 Score: 530
Period size: 44 Copynumber: 26.4 Consensus size: 44
20787477 CCTTATTCTT
* *
20787487 TAGTGGAATAGGTTGAAGATTTTAAGTCTTATCTCCCTGGTCAG
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
*
20787531 TAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAG
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
* * *
20787575 CAGTGAAATAGG-TG-A-ATCT-T-A-T-C---C-CCCTTGTCAG
1 TAGTGGAATAGGTTGAAGAT-TGTAAGTCCTATCTCCCTGGTCAG
* *
20787609 TAGTGGAATATGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAG
1 TAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAG
*
20787653 TAGTGTAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAG-CAG
1 TAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTG-GTCAG
* * * *
20787697 CAGTGGAGTAGGTTGAA-AAT-TACAGATCCTATCTCCCTAAG-CAG
1 TAGTGGAATAGGTTGAAGATTGTA-AG-TCCTATCTCCCT-GGTCAG
* ** * ** ** * * **
20787741 TAGTAGAGCAGATTGAAGACGGCGATTCTTATCTTTCCAAGGT-AG
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATC--TCCCTGGTCAG
* ** ** ****
20787786 TAG-GGAAGCAAATTTCAGCCACT-AG-CCTTATCTCCCTGGTCAG
1 TAGTGGAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCCTGGTCAG
* *
20787829 TAGTGGGATATGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
* * * *
20787873 CAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTCAA
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
* * *
20787917 CAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCAG
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
* * *
20787961 CATTGGAATA----G--G--TG-AA-TCCTATCTCCCTGGTTAG
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
*
20787995 CAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAG
1 TAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAG
* * * **
20788039 CAATAGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGACCAG
1 TAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAG
* * * * ** *
20788083 CAGTGGAGTAGGTTGAA-AAT-TACAGATCTTATCTCCCAAAG-CTG
1 TAGTGGAATAGGTTGAAGATTGTA-AG-TCCTATCTCCC-TGGTCAG
** * * * * * *
20788127 TAGTGGAGCAGATCGAAGACTGCGAA-TCTTATCTTCCCAAGG-CAG
1 TAGTGGAATAGGTTGAAGATTG-TAAGTCCTATC-TCCC-TGGTCAG
* ** * **** *
20788172 TAG-GGAAGAACATTTAAGCCACTCA--CCTTATCTCCCTGGTCAG
1 TAGTGGAA-TAGGTTGAAGATTGTAAGTCC-TATCTCCCTGGTCAG
*
20788215 TAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAG
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
* * *
20788259 CAGT-GAA-A---T--AG-GTG-AA-TCCTATCTCCCTTGTCAG
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
*
20788293 TAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCTCTGGTCAG
1 TAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAG
* * *
20788337 TAGTGCAATAGGTTGTAGATTGTAAATCCTATCTCCCTGAG-CAG
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTG-GTCAG
* * * **
20788381 CAGTGGAATAGGTTGAA-AAT-TACAGATCTTATCTCCCAAAG-CAG
1 TAGTGGAATAGGTTGAAGATTGTA-AG-TCCTATCTCCC-TGGTCAG
* * * * ** ** * * *
20788425 TAGTAGAGTAGATCGAAGACGGCGATTCTTATCTTCCCAAGG-CAG
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATC-TCCC-TGGTCAG
* ****
20788470 TAG-GGAAGT-GGATTTAAGCCACT-AG-CCTTATCTCCCTGGTCAG
1 TAGTGGAA-TAGG-TTGAAGATTGTAAGTCC-TATCTCCCTGGTCAG
* * *
20788513 TAGTGGAATAGGCTGAAGATTGTAAGTCCTATCTCCCTAAGTCAA
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT-GGTCAG
* * * *
20788558 CAGTGGAATAGGTTGAAGATTCTGAGTCCTATCTCCCTGGTCAA
1 TAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
*
20788602 CAGTGGAATAGGTTGA
1 TAGTGGAATAGGTTGA
20788618 TGTACATATA
Statistics
Matches: 839, Mismatches: 169, Indels: 158
0.72 0.14 0.14
Matches are distributed among these distances:
34 61 0.07
35 10 0.01
36 7 0.01
37 5 0.01
38 2 0.00
39 5 0.01
40 4 0.00
41 7 0.01
42 23 0.03
43 63 0.08
44 544 0.65
45 103 0.12
46 4 0.00
47 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (44 bp):
TAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAG
Found at i:20787642 original size:78 final size:78
Alignment explanation
Indices: 20787513--20787665 Score: 227
Period size: 78 Copynumber: 2.0 Consensus size: 78
20787503 AGATTTTAAG
* *
20787513 TCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAG
1 TCTTATCCCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAG
20787578 TGAAATAGGTGAA
66 TGAAATAGGTGAA
* * * *
20787591 TCTTATCCCCCTTGTCAGTAGTGGAATATGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGTA
1 TCTTATCCCCCTGGTCAGTAGTGGAATAGGTTGAAGATTAT-AAGTCATATCTCCCTGGTCAGCA
*
20787655 GTGTAATAGGT
65 GTGAAATAGGT
20787666 TGAAGATTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 65 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (78 bp):
TCTTATCCCCCTGGTCAGTAGTGGAATAGGTTGAAGATTATAAGTCATATCTCCCTGGTCAGCAG
TGAAATAGGTGAA
Found at i:20788029 original size:78 final size:78
Alignment explanation
Indices: 20787894--20788051 Score: 237
Period size: 78 Copynumber: 2.0 Consensus size: 78
20787884 GTTGACGATT
* *
20787894 GTGAGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTC
1 GTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCCTGGTC
* *
20787959 AGCATTGGAATAG
66 AGCAATAGAATAG
* * *
20787972 GTGAATCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGT
1 GTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGT-AAGTCCAATCTCCCTGGT
20788036 CAGCAATAGAATAG
65 CAGCAATAGAATAG
20788050 GT
1 GT
20788052 TGAAGATTGT
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
78 70 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (78 bp):
GTGAATCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTCCAATCTCCCTGGTC
AGCAATAGAATAG
Found at i:20788073 original size:122 final size:122
Alignment explanation
Indices: 20787855--20788074 Score: 361
Period size: 122 Copynumber: 1.8 Consensus size: 122
20787845 AGATTGTAAG
* * *
20787855 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAG
1 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAA
*
20787920 TGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCAGCATTGGAATAGGTGAA
66 TAGAATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCAGCATTGGAATAGGTGAA
* *
20787977 TCCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAA
1 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAA
*
20788042 TAGAATAGGTTGAAGATTGTGAA-TCCTATCTCC
66 TAGAATAGGTTGAAGATTGT-AAGTCCAATCTCC
20788075 CTGACCAGCA
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
122 88 0.98
123 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (122 bp):
TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAACAA
TAGAATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCAGCATTGGAATAGGTGAA
Found at i:20788116 original size:298 final size:296
Alignment explanation
Indices: 20786678--20788570 Score: 1047
Period size: 298 Copynumber: 6.4 Consensus size: 296
20786668 CCACTAGCTT
* * *
20786678 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCCTATCTCCCTGGTCAGCAGTGG
* * * *
20786743 GATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAATGGAATAGGTGAATCATATCTCCC
66 AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCC
* * * * *
20786808 TGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTGCTCAGCAATGGAATAGGTT
131 TGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTAGAATAGGTT
* * * * *
20786873 GAAGACTGTGAATTCTATGTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCT-
196 GAAGACTGTGAATCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAAATTACAGATCTTATCTC
* * * ** * * *
20786937 CCAGAAG-CAGTAGTGGAGCAGATCGAAGACGGCGATTCT
261 CCTG--GTCAGTAGTGGAGTAG-TTGAAGATTG-TAATCC
* * * * * ** * * ***
20786976 TATCTGCCCAAGGT-AGTAG-GGAAGCAGATTTAAGACACTG-G-CCTTATATCCCTGTTCTTTA
1 TATCT-CCC-TGGTCAGCAGTGGAA-TAGGTTGAAGACTGTGAGTCC-TATCTCCCTGGTCAGCA
* * * *
20787037 GTGGAATAGGTTGAAGATTTTAAGTCTTATCTCCCTGGTCAGTAGTGAAATAGGTGAATCCTATC
62 GTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATC
** * * * * * *
20787102 TCAATGGTCAGCAGTGGGATAGGTTAAAGATTGTGAGTCTTATCTCCCTGGTCAACAGTGGAATA
127 TCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTAGAATA
* * **
20787167 GGTTGAAGATTGT-AAGTACTATCTCCCTGGTCAGCAGTGGAATAGG-TG--AA-T-C--A---T
192 GGTTGAAGACTGTGAA-TCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAAATTACAGATCTT
* * * *
20787221 ATTTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCC
256 ATCTCCCTGGTCAGTAGTGGA-GTAGTTGAAGATTGT-AATCC
* * *
20787264 TATCTCCCTGGTCAGCAATGGAATAGGTTGAAGACTGTGAATCCTATGTCCCTGAG-CAGCAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCCTATCTCCCTG-GTCAGCAGTG
* * * * * ** * * * * *
20787328 GAGTAGGTTAAAAATTAT-AGATCTTATCTCCC---AAAGCAGATCGAAGACGGCGAATCTTACC
65 GAATAGGTTGAAGATTGTAAG-TCCTATCTCCCTGGTCAGCAG-TGGAATA-GGTGAATCCTATC
* * * * * * * * * ** *
20787389 TTCCCAAGGT-AGTAG-AGAAGAAGATTTAAGCTAGT--AGCCTTATCTCCCAAAG-CAGTAGTA
127 -TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTGAATCC-TATCTCCC-TGGTCAGCAGTA
** * * ** * * * * *** *
20787449 GGGTAGATTTAAGACACTG--GCCTTATAT-CCTTATTCTTTAGTGGAATAGGTTGAAGATTTTA
187 GAATAGGTTGAAGACTGTGAATCC-TATCTCCCTGA-CCAGCAGTGGAATAGGTTGAA-A-ATTA
* *
20787511 -AG-TCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCA
248 CAGATCTTATCTCCCTGGTCAGTAGTGGAGTA-GTTGAAGATTGTAA-TCC
* * * *
20787560 TATCTCCCTGGTCAGCAGTGAAATAGG-TGAA-TCT-T-A-T-C---C-CCCTTGTCAGTAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCCTATCTCCCTGGTCAGCAGTGG
* * * *
20787615 AATATGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGTAGTGTAATAGGTTGAAGATTGTGAA
66 AATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAGTG-GA-A---T--AG---GTGAA
* * ** *
20787679 TCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATT-ACAGATCCTATCTCCCTAAG-CAG
120 TCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTGA-ATCCTATCTCCCT-GGTCAG
* ** * * * * * * * * ** *
20787741 TAGTAGAGCAGATTGAAGACGGCGATTCTTATCT---T-TCCA--AG-GTAGTAGGGAAGCAAAT
182 CAGTAGAATAGGTTGAAGACTGTGAATCCTATCTCCCTGACCAGCAGTGGAATA-GGTTGAAAAT
*
20787799 TTCAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGG-GATATGTTGAAGATTGTAAGTCC
246 TACAG--A-T---CTTATCTCCCTGGTCAGTAGTGGAG-TA-GTTGAAGATTGTAA-TCC
* * *
20787858 TATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCCTATCTCCCTGGTCAGCAGTGG
* * *
20787923 AATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCAGCATTGGAATAGGTGAATCCTATCTCCC
66 AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCC
* *
20787988 TGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAGAATAGGTT
131 TGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTAGAATAGGTT
* *
20788053 GAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTC
196 GAAGACTGTGAATCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAAATTACAGATCTTATCTC
** * * * * * *
20788118 CCAAAG-CTGTAGTGGAGCAGATCGAAGACTGCGAATCT
261 CC-TGGTCAGTAGTGGAGTAG-TTGAAGATTG-TAATCC
* * * ** * * ** * *
20788156 TATCTTCCCAAGG-CAGTAG-GGAAGAACATTTAAGCCACTCA--CCTTATCTCCCTGGTCAGTA
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGACTGTGAGTCC-TATCTCCCTGGTCAGCA
* *
20788217 GTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGAATCCTATC
62 GTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATC
* * * *
20788282 TCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCTCTGGTCAGTAGT-GCAAT
127 TCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTAG-AAT
* * * *
20788346 AGGTTGTAGATTGTAAATCCTATCTCCCTGAGCAGCAGTGGAATAGGTTGAAAATTACAGATCTT
191 AGGTTGAAGACTGTGAATCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAAATTACAGATCTT
** * * ** * * *
20788411 ATCTCCCAAAG-CAGTAGTAGAGTAGATCGAAGACGGCGATTCT
256 ATCTCCC-TGGTCAGTAGTGGAGTAG-TTGAAGATTG-TAATCC
* * * * ** *
20788454 TATCTTCCCAAGG-CAGTAG-GGAAGT-GGATTTAAGCCACT-AG-CCTTATCTCCCTGGTCAGT
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGG-TTGAAGACTGTGAGTCC-TATCTCCCTGGTCAGC
* * *
20788514 AGTGGAATAGGCTGAAGATTGTAAGTCCTATCTCCCTAAGTCAACAGTGGAATAGGT
61 AGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCT-GGTCAGCAGTGGAATAGGT
20788571 TGAAGATTCT
Statistics
Matches: 1229, Mismatches: 259, Indels: 213
0.72 0.15 0.13
Matches are distributed among these distances:
285 9 0.01
286 60 0.05
287 58 0.05
288 90 0.07
289 14 0.01
290 5 0.00
291 9 0.01
292 8 0.01
293 2 0.00
294 5 0.00
295 12 0.01
296 76 0.06
297 55 0.04
298 679 0.55
299 58 0.05
300 6 0.00
301 5 0.00
302 5 0.00
303 2 0.00
304 14 0.01
305 5 0.00
306 1 0.00
307 4 0.00
308 47 0.04
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (296 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGACTGTGAGTCCTATCTCCCTGGTCAGCAGTGG
AATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATCCTATCTCCC
TGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTAGAATAGGTT
GAAGACTGTGAATCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAAATTACAGATCTTATCTC
CCTGGTCAGTAGTGGAGTAGTTGAAGATTGTAATCC
Found at i:20788333 original size:78 final size:78
Alignment explanation
Indices: 20788200--20788349 Score: 239
Period size: 78 Copynumber: 1.9 Consensus size: 78
20788190 CCACTCACCT
20788200 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
20788265 AATAGGTGAATCC
66 AATAGGTGAATCC
* * * *
20788278 TATCTCCCTTGTCAGTAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCTCTGGTCAGTAGTG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCATATCTCCCTGGTCAGCAGTG
*
20788342 CAATAGGT
65 AAATAGGT
20788350 TGTAGATTGT
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 64 0.97
79 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (78 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGA
AATAGGTGAATCC
Found at i:20788417 original size:386 final size:387
Alignment explanation
Indices: 20786458--20788402 Score: 1373
Period size: 386 Copynumber: 5.1 Consensus size: 387
20786448 CCACTAGCCT
* * * * * * * *
20786458 TATCTTCCTGGTCAGTAGTGGAATAGGTTCACGATTGT-AAGTTCTATCTCCCTAGTCAGCAGTG
1 TATCTCCCTGG-CAGCAGTGGAATAGGTTGAAGATTATGAA-TCCTATCTCCCTGGTCAGCAATG
* * * * * *
20786522 GAATAGGCTGAAGATTGTGAATCCTATATCCCTGAGCAGTAGTGGAGTAGGTTGCAAAA-TATAG
64 TAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTG-AAAATTACAG
** * * * * *
20786586 ATATTATCTCCCTAAGTAGTAGTAGAGCAGATCAAAGACGGCGATTCTTATCTTCCCAAGGTAGT
128 ATCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGCAGT
* * *
20786651 AGGGAAGTAGATTTAAGCCACTAGCTTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT
193 AGGGAAGCAAATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT
* * * *
20786716 AAGTCCTATCTCCCTGGTCAGCAGTGGGATAGGTTGAAGAT-TGTAAGTACTATCTCCCTGGTCA
258 AAGTCATATCTCCCTGGTCAGCAGTGGAATA-G-TGACG-TGTG-AA-TCCTATCTCCCTGGTCA
* * ** * * *
20786780 GCAATGGAATAGG-TG-A-ATCAT-A-T-C--TC-CCTGGTCAGCAGTGGACTTGGTTGAAGATT
318 GTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCTGGTCAGCAGTGAAATAGG-TG-AGATT
20786836 GTGAATCC
381 GT-AATCC
* * * * * * * *
20786844 TATCTCCCTGCTCAGCAATGGAATAGGTTGAAGACTGTGAATTCTATGTCCTTGAG-CAGCAGTG
1 TATCTCCCTG-GCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTG-GTCAGCAATG
* * * ** * * * * * * * * ***
20786908 GAGTAGGTTGAAAATT-ACAGATCTTATCT-CCAGAAGCAGTAGTGGAGCAGATCGAAGACGGC-
64 TAATAGGTTGAAGATTGTGA-ATCCTATCTCCCTG-ACCAGCAGTGGAGTAGGTTGAAAATTACA
* * * * ** * ** * *
20786970 GATTCTTATCTGCCCAAGGTAGTAG-GGAAGCAGATTTAAGAC-ACTG-GCCTTAT-ATCCC-TG
127 GA-TCCTATCT-CCCAAAGCAGTAGTAG-AGCAGATCGAAGACGGC-GAATCTTATCTTCCCAAG
* ** * ** * **** *
20787030 TTCTTTAGTGGAA-TAGGTTGAAGATTTTAAGTCTTATCTCCCTGGTCAGTAGT-GAA-A---T-
188 -GCAGTAG-GGAAGCAAATTTAAGCCACT-AGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTG
* * ** * * * * *
20787088 -AG-GTG-AA-TCCTATCTCAATGGTCAGCAGTGGGATAGGTTAAAGATTGTGAGTCTTATCTCC
250 AAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGGAATA-G-TGACG--TGTGAATCCTATCTCC
** * *
20787149 CTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGTACTATCTCCCTGGTCAGCAGTGGAATA---
311 CTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCT-CCTGGTCAGCAGTGAAATAGGT
*
20787211 G-G--TG-AATCA
375 GAGATTGTAATCC
* * * * *
20787220 TATTTCCCTGGTCAGCAGTGGACTTGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATGG
1 TATCTCCCTGG-CAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAATGT
* * * * *
20787285 AATAGGTTGAAGACTGTGAATCCTATGTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATTATAGAT
65 AATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGAT
* * *
20787350 CTTATCT-CC----C---A--A-AGCAGATCGAAGACGGCGAATCTTACCTTCCCAAGGTAGTAG
130 CCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGCAGTAG
* * * ** * * * ***
20787404 AGAAG-AAGATTTAAGCTAGTAGCCTTATCTCCCAAAG-CAGTAGTAGG-GTAGATTTAAGACAC
195 GGAAGCAA-ATTTAAGCCACTAGCCTTATCTCCC-TGGTCAGTAGT-GGAATAGGTTGAAGATTG
* * * * * ** *** * * * *
20787466 T-GGCCTTATATCCTTATTCTTTAGTGGAATAGGTTGAAGATTTTAAGTCTTATCTCCCTGGTCA
257 TAAGTCATATCTCCCTGGTCAGCAGTGGAATA-G-TGACG-TGTGAA-TCCTATCTCCCTGGTCA
*
20787530 GTAGTGGAATAGGTTGAAGATTGTAAGTCATATCTCCCTGGTCAGCAGTGAAATAGGTGA-ATCT
318 GTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCT-CCTGGTCAGCAGTGAAATAGGTGAGAT-T
20787594 -T-ATCC
381 GTAATCC
* * * * * *
20787599 ---C-CCTTGTCAGTAGTGGAATATGTTGAAGATTATGAATCCTATCTCCCTGGTCAGTAGTGTA
1 TATCTCCCTGGCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAATGTA
*
20787660 ATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATC
66 ATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGATC
* * * * *
20787725 CTATCTCCCTAAGCAGTAGTAGAGCAGATTGAAGACGGCGATTCTTATCTTTCCAAGGTAGTAGG
131 CTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGCAGTAGG
* * *
20787790 GAAGCAAATTTCAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGGATATGTTGAAGATTGTAAG
196 GAAGCAAATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG
* * **
20787855 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGACGATTGTGAGTCCTATCTCCCTGGTCAACAG
261 TCATATCTCCCTGGTCAGCAGTGGAATA-G-TGACG--TGTGAATCCTATCTCCCTGGTCAGTAG
* * *
20787920 TGGAATAGGTTGAAGATTGTAAGTCCAATCTCCTTGGTCAGCATTGGAATA---G-G--TG-AAT
322 TGGAATAGGTTGAAGATTGTAAGTCCTATCTCC-TGGTCAGCAGTGAAATAGGTGAGATTGTAAT
20787978 CC
386 CC
* *
20787980 TATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAATAG
1 TATCTCCCTGG-CAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAAT-G
20788045 -AATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGA
64 TAATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGA
* * * *
20788109 TCTTATCTCCCAAAGCTGTAGTGGAGCAGATCGAAGACTGCGAATCTTATCTTCCCAAGGCAGTA
129 TCCTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGCAGTA
20788174 GGGAAG-AACATTTAAGCCACTCA-CCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG
194 GGGAAGCAA-ATTTAAGCCACT-AGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG
*
20788237 TAAGTCATATCTCCCTGGTCAGCAGT-GAA-A-T-A-G-GTGAATCCTATCTCCCTTGTCAGTAG
257 TAAGTCATATCTCCCTGGTCAGCAGTGGAATAGTGACGTGTGAATCCTATCTCCCTGGTCAGTAG
* *
20788296 TGGAATAGGTTGAAGATTGTGAA-TCCTATCTCTCTGGTCAGTAGTGCAATAGGTTGTAGATTGT
322 TGGAATAGGTTGAAGATTGT-AAGTCCTATCTC-CTGGTCAGCAGTGAAATAGG-TG-AGATTGT
20788360 AAATCC
383 -AATCC
*
20788366 TATCTCCCTGAGCAGCAGTGGAATAGGTTGAAAATTA
1 TATCTCCCTG-GCAGCAGTGGAATAGGTTGAAGATTA
20788403 CAGATCTTAT
Statistics
Matches: 1231, Mismatches: 230, Indels: 196
0.74 0.14 0.12
Matches are distributed among these distances:
364 13 0.01
365 28 0.02
366 15 0.01
367 4 0.00
370 1 0.00
372 2 0.00
373 3 0.00
374 205 0.17
375 7 0.01
376 224 0.18
377 16 0.01
378 7 0.01
379 10 0.01
380 6 0.00
381 7 0.01
382 4 0.00
383 1 0.00
384 12 0.01
385 119 0.10
386 514 0.42
387 33 0.03
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (387 bp):
TATCTCCCTGGCAGCAGTGGAATAGGTTGAAGATTATGAATCCTATCTCCCTGGTCAGCAATGTA
ATAGGTTGAAGATTGTGAATCCTATCTCCCTGACCAGCAGTGGAGTAGGTTGAAAATTACAGATC
CTATCTCCCAAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGCAGTAGG
GAAGCAAATTTAAGCCACTAGCCTTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAG
TCATATCTCCCTGGTCAGCAGTGGAATAGTGACGTGTGAATCCTATCTCCCTGGTCAGTAGTGGA
ATAGGTTGAAGATTGTAAGTCCTATCTCCTGGTCAGCAGTGAAATAGGTGAGATTGTAATCC
Found at i:20788567 original size:45 final size:44
Alignment explanation
Indices: 20788498--20788613 Score: 160
Period size: 45 Copynumber: 2.6 Consensus size: 44
20788488 CCACTAGCCT
* ** *
20788498 TATCTCCCTGGTCAGTAGTGGAATAGGCTGAAGATTGTAAGTCC
1 TATCTCCCTAGTCAACAGTGGAATAGGCTGAAGATTCTAAGTCC
* *
20788542 TATCTCCCTAAGTCAACAGTGGAATAGGTTGAAGATTCTGAGTCC
1 TATCTCCCT-AGTCAACAGTGGAATAGGCTGAAGATTCTAAGTCC
*
20788587 TATCTCCCTGGTCAACAGTGGAATAGG
1 TATCTCCCTAGTCAACAGTGGAATAGG
20788614 TTGATGTACA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
44 26 0.41
45 38 0.59
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (44 bp):
TATCTCCCTAGTCAACAGTGGAATAGGCTGAAGATTCTAAGTCC
Found at i:20790166 original size:33 final size:33
Alignment explanation
Indices: 20790123--20790200 Score: 102
Period size: 33 Copynumber: 2.4 Consensus size: 33
20790113 AGCTAATGTG
* *
20790123 CTTGATTTCCAACAATAGATACAATGACAAACT
1 CTTGATTTCCAACAACAAATACAATGACAAACT
* * **
20790156 GTTGATTTCCAACAGCAAATACAATGGTAAACT
1 CTTGATTTCCAACAACAAATACAATGACAAACT
20790189 CTTGATTTCCAA
1 CTTGATTTCCAA
20790201 AAGGAAATAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (33 bp):
CTTGATTTCCAACAACAAATACAATGACAAACT
Found at i:20790209 original size:33 final size:33
Alignment explanation
Indices: 20790123--20790209 Score: 95
Period size: 33 Copynumber: 2.6 Consensus size: 33
20790113 AGCTAATGTG
* *
20790123 CTTGATTTCCAACAA-TAGATACAATGACAAACT
1 CTTGATTTCCAA-AAGCAAATACAATGACAAACT
* * **
20790156 GTTGATTTCCAACAGCAAATACAATGGTAAACT
1 CTTGATTTCCAAAAGCAAATACAATGACAAACT
*
20790189 CTTGATTTCCAAAAGGAAATA
1 CTTGATTTCCAAAAGCAAATA
20790210 AAGGATTTTC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
32 1 0.02
33 43 0.98
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (33 bp):
CTTGATTTCCAAAAGCAAATACAATGACAAACT
Found at i:20792617 original size:18 final size:18
Alignment explanation
Indices: 20792581--20792634 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
20792571 ATATATTCTT
*
20792581 AAGAAAAGAAAAACGAAA
1 AAGAAAAGAAAAACAAAA
*
20792599 AAGAAAAGAAAAATAAAAA
1 AAGAAAAGAAAAA-CAAAA
*
20792618 AAGAGAAGGAAAAACAA
1 AAGA-AAAGAAAAACAA
20792635 GTAAAAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 13 0.43
19 9 0.30
20 8 0.27
ACGTcount: A:0.78, C:0.04, G:0.17, T:0.02
Consensus pattern (18 bp):
AAGAAAAGAAAAACAAAA
Found at i:20794661 original size:45 final size:44
Alignment explanation
Indices: 20794610--20794702 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 44
20794600 GGTTCGCTGT
* *
20794610 AATGGAATAGAGCTGTAATAGTAATTCAATT-T-TTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-ATTC--TTCTGTTAGGTTGAATGG
*
20794655 AATGGAATAGAACTGTAATGGTATTCTTCTGTTAGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCTTCTGTTAGGTTGAATGG
20794699 AATG
1 AATG
20794703 ATGTTGTAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
42 2 0.05
43 1 0.02
44 20 0.47
45 20 0.47
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCTTCTGTTAGGTTGAATGG
Found at i:20795130 original size:17 final size:17
Alignment explanation
Indices: 20795110--20795142 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
20795100 ATTAAGAATG
20795110 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
*
20795127 TTATTAAATTTTATTT
1 TTATTAAATTATATTT
20795143 AATAAGATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:20801735 original size:50 final size:50
Alignment explanation
Indices: 20801668--20801859 Score: 215
Period size: 50 Copynumber: 3.8 Consensus size: 50
20801658 TTTCTTGTAC
* * * * * *
20801668 TGCCAATGCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGG
* * **
20801718 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTT-TCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CTTCTCATCTCGG
* * * *
20801768 TGCCAACGCCATGTCCCAGACAAGGTCTTACATGGGACCTCTTATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGG
** *
20801818 TGCCAACAACATGTCCCAGACATGGTCTTACATGGGATTTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTTCT
20801860 TTACCCAAAT
Statistics
Matches: 119, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
49 2 0.02
50 115 0.97
51 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGG
Found at i:20803515 original size:15 final size:14
Alignment explanation
Indices: 20803491--20803532 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 14
20803481 TAATCTTTGG
20803491 TTTATTATTTTATT
1 TTTATTATTTTATT
20803505 TTTAGTTA-TTTATT
1 TTTA-TTATTTTATT
20803519 TTTAATTATTTTAT
1 TTT-ATTATTTTAT
20803533 CTGACTTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 16 0.64
15 9 0.36
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (14 bp):
TTTATTATTTTATT
Found at i:20804391 original size:20 final size:20
Alignment explanation
Indices: 20804366--20804405 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
20804356 CATTGAGAAT
20804366 TTGAGTGGCGTGTTCTTTTC
1 TTGAGTGGCGTGTTCTTTTC
20804386 TTGAGTGGCGTGTTCTTTTC
1 TTGAGTGGCGTGTTCTTTTC
20804406 AAGCTTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.05, C:0.15, G:0.30, T:0.50
Consensus pattern (20 bp):
TTGAGTGGCGTGTTCTTTTC
Found at i:20807188 original size:25 final size:25
Alignment explanation
Indices: 20807153--20807200 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
20807143 TCAAATCTGT
20807153 GACTTTGGTAAACTTTACGATCCGC
1 GACTTTGGTAAACTTTACGATCCGC
*
20807178 GACTTTTGTAAACTTTACGATCC
1 GACTTTGGTAAACTTTACGATCC
20807201 ACTTCCGCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (25 bp):
GACTTTGGTAAACTTTACGATCCGC
Found at i:20821443 original size:15 final size:17
Alignment explanation
Indices: 20821425--20821460 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
20821415 TAATAAGTTC
20821425 AAAATTAAAA-AT-AGA
1 AAAATTAAAATATGAGA
20821440 AAAA-TAAAATATGAGA
1 AAAATTAAAATATGAGA
20821456 AAAAT
1 AAAAT
20821461 CATCAACCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
14 5 0.28
15 6 0.33
16 7 0.39
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.19
Consensus pattern (17 bp):
AAAATTAAAATATGAGA
Found at i:20823754 original size:8 final size:8
Alignment explanation
Indices: 20823723--20823785 Score: 56
Period size: 9 Copynumber: 7.2 Consensus size: 8
20823713 AAATTATCAA
20823723 ATAAAAAT
1 ATAAAAAT
20823731 A-AAAAAT
1 ATAAAAAT
20823738 CAATAAAAATT
1 --ATAAAAA-T
20823749 ATAAAAAT
1 ATAAAAAT
*
20823757 ATTAAAATTT
1 A-TAAAA-AT
20823767 AATAAAAAT
1 -ATAAAAAT
20823776 ATAAAAAT
1 ATAAAAAT
20823784 AT
1 AT
20823786 TTAAAATTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
7 6 0.13
8 13 0.28
9 14 0.30
10 11 0.24
11 2 0.04
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.29
Consensus pattern (8 bp):
ATAAAAAT
Found at i:20823756 original size:19 final size:18
Alignment explanation
Indices: 20823722--20823852 Score: 79
Period size: 19 Copynumber: 6.9 Consensus size: 18
20823712 AAAATTATCA
20823722 AATAAAAA-TA-AAAAAT
1 AATAAAAATTATAAAAAT
20823738 CAATAAAAATTATAAAAAT
1 -AATAAAAATTATAAAAAT
* *
20823757 ATTAAAATTTAATAAAAAT
1 AATAAAAATT-ATAAAAAT
* *
20823776 -ATAAAAATATTTAAAATTT
1 AATAAAAAT-TATAAAA-AT
* * *
20823795 ACTAAAAATTAGAAAGAAA
1 AATAAAAATTATAAA-AAT
*
20823814 AATATATAAATTGTAAAATAT
1 AATA-A-AAATTATAAAA-AT
20823835 ATATAAAATATTATAAAA
1 A-ATAAAA-ATTATAAAA
20823853 TGCATCAAAA
Statistics
Matches: 86, Mismatches: 16, Indels: 20
0.70 0.13 0.16
Matches are distributed among these distances:
17 8 0.09
18 21 0.24
19 23 0.27
20 12 0.14
21 19 0.22
22 3 0.03
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (18 bp):
AATAAAAATTATAAAAAT
Found at i:20823763 original size:27 final size:26
Alignment explanation
Indices: 20823723--20823792 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 26
20823713 AAATTATCAA
*
20823723 ATAAAAATA-AAAAATCAATAAAAATT
1 ATAAAAATATTAAAATCAATAAAAA-T
*
20823749 ATAAAAATATTAAAATTTAATAAAAAT
1 ATAAAAATATTAAAA-TCAATAAAAAT
20823776 ATAAAAATATTTAAAAT
1 ATAAAAATA-TTAAAAT
20823793 TTACTAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
26 9 0.23
27 15 0.38
28 15 0.38
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.30
Consensus pattern (26 bp):
ATAAAAATATTAAAATCAATAAAAAT
Found at i:20823801 original size:27 final size:28
Alignment explanation
Indices: 20823723--20823805 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
20823713 AAATTATCAA
* *
20823723 ATAAAAATA--AAAAATCAATAAAAATT
1 ATAAAAATATTAAAATTTAATAAAAATT
20823749 ATAAAAATATTAAAATTTAATAAAAA-T
1 ATAAAAATATTAAAATTTAATAAAAATT
*
20823776 ATAAAAATATTTAAAATTTACTAAAAATT
1 ATAAAAATA-TTAAAATTTAATAAAAATT
20823805 A
1 A
20823806 GAAAGAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 9 0.18
27 10 0.20
28 29 0.58
29 2 0.04
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.31
Consensus pattern (28 bp):
ATAAAAATATTAAAATTTAATAAAAATT
Found at i:20823851 original size:10 final size:10
Alignment explanation
Indices: 20823740--20823853 Score: 50
Period size: 10 Copynumber: 11.7 Consensus size: 10
20823730 TAAAAAATCA
20823740 ATAAAA-ATT
1 ATAAAATATT
20823749 ATAAAA-A-T
1 ATAAAATATT
20823757 ATTAAAAT-TT
1 A-TAAAATATT
20823767 AATAAAA-A-T
1 -ATAAAATATT
20823776 ATAAAAATATT
1 AT-AAAATATT
20823787 -TAAAAT-TT
1 ATAAAATATT
20823795 ACTAAAA-ATT
1 A-TAAAATATT
* * *
20823805 AGAAAGAAAAAT
1 A-TAA-AATATT
*
20823817 ATATAA-ATT
1 ATAAAATATT
*
20823826 GTAAAATATAT
1 ATAAAATAT-T
20823837 ATAAAATATT
1 ATAAAATATT
20823847 ATAAAAT
1 ATAAAAT
20823854 GCATCAAAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 29
0.68 0.08 0.24
Matches are distributed among these distances:
8 6 0.07
9 28 0.35
10 30 0.37
11 14 0.17
12 3 0.04
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (10 bp):
ATAAAATATT
Found at i:20824227 original size:29 final size:29
Alignment explanation
Indices: 20824178--20824251 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
20824168 TTATAATCCT
*
20824178 TTTCTAAT-TTTTTTATAAAAATTAAATA
1 TTTCTAATATTTTTTATTAAAATTAAATA
* *
20824206 TTTCTTATATTTTTTATTAAAATTTAATA
1 TTTCTAATATTTTTTATTAAAATTAAATA
* *
20824235 ATT-TAATAATTTTTATT
1 TTTCTAATATTTTTTATT
20824252 GATTTTTATT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 19 0.49
29 20 0.51
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTCTAATATTTTTTATTAAAATTAAATA
Found at i:20825685 original size:22 final size:23
Alignment explanation
Indices: 20825631--20825685 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
20825621 GAAGATATTC
20825631 AATCTTA-AGATATGATATGTAT
1 AATCTTAGAGATATGATATGTAT
*
20825653 --TCTTAGAAGATATGAT-TTTAT
1 AATCTTAG-AGATATGATATGTAT
20825674 AATCTTAGAGAT
1 AATCTTAGAGAT
20825686 TTAATTTGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
20 5 0.18
21 4 0.14
22 13 0.46
23 6 0.21
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (23 bp):
AATCTTAGAGATATGATATGTAT
Found at i:20829388 original size:8 final size:8
Alignment explanation
Indices: 20829375--20829404 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
20829365 ACATTTGTTT
20829375 TTTATTAA
1 TTTATTAA
20829383 TTTATTAA
1 TTTATTAA
20829391 TTTATTAA
1 TTTATTAA
20829399 -TTATTA
1 TTTATTA
20829405 TTATTGGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TTTATTAA
Found at i:20836017 original size:88 final size:88
Alignment explanation
Indices: 20835854--20836040 Score: 241
Period size: 88 Copynumber: 2.1 Consensus size: 88
20835844 AACAGATTAG
* * * * *
20835854 TGAAGATAGTAGATCTTGCCTTCCTACACCGACAGTGAAGCAGATTGAAGACACCAGCCTTGCCT
1 TGAAAATAGCAGATCTTGCCTTCCTACACCGACAGTGAAGCAAATCGAAGAAACCAGCCTTGCCT
* ** *
20835919 CCCTCGGTTGCAGTGGAGTAGGT
66 ACCTCGGTTGCAGCAGAGCAGGT
* * *
20835942 TGAAAATAGCAGATCTTGCCTTCCTGCACCGATAGTGAAGCAAATCGAAGAAACCAGCCTTGCTT
1 TGAAAATAGCAGATCTTGCCTTCCTACACCGACAGTGAAGCAAATCGAAGAAACCAGCCTTGCCT
*
20836007 ATCT-GTGTTGCAGCAGAGCAGGT
66 ACCTCG-GTTGCAGCAGAGCAGGT
20836030 TGAAAATAGCA
1 TGAAAATAGCA
20836041 AATCGAAGAC
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
87 1 0.01
88 84 0.99
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (88 bp):
TGAAAATAGCAGATCTTGCCTTCCTACACCGACAGTGAAGCAAATCGAAGAAACCAGCCTTGCCT
ACCTCGGTTGCAGCAGAGCAGGT
Found at i:20836074 original size:57 final size:57
Alignment explanation
Indices: 20835980--20836095 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 57
20835970 CCGATAGTGA
* * * * *
20835980 AGCAAATCGAAGAAACCAGCCTTGCTTATCTGTGTTGCAGCAGAGCAGGTTGAAAAT
1 AGCAAATCGAAGAAACCAGCCTTACCTACCCGGGTTGCAGCAGAGCAGGTTGAAAAT
* * * * *
20836037 AGCAAATCGAAGACACCAGCCTTACCTCCCCGGGTTGCAGCGGAGTAGGTTGAAGAT
1 AGCAAATCGAAGAAACCAGCCTTACCTACCCGGGTTGCAGCAGAGCAGGTTGAAAAT
20836094 AG
1 AG
20836096 TGGATCTTGC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (57 bp):
AGCAAATCGAAGAAACCAGCCTTACCTACCCGGGTTGCAGCAGAGCAGGTTGAAAAT
Found at i:20836171 original size:145 final size:145
Alignment explanation
Indices: 20835900--20836178 Score: 362
Period size: 145 Copynumber: 1.9 Consensus size: 145
20835890 GAAGCAGATT
* *
20835900 GAAGACACCAGCCTTGCCTCCCTCGGTTGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGCCTTC
1 GAAGACACCAGCCTTACCTCCCTCGGTTGCAGCGGAGTAGGTTGAAAATAGCAGATCTTGCCTTC
* * * * * * * *
20835965 CTGCACCGATAGTGAAGCAAATCGAAGAAACCAGCCTTGCTTATCTGTGTTGCAGCAGAGCAGGT
66 CTGCACCAACAGCGAAGCAAATCGAAGAAACCAGCCTTGCCTACCTGGGTTACAGCAGAGCAGAT
20836030 TGAAAATAGCAAATC
131 TGAAAATAGCAAATC
* **
20836045 GAAGACACCAGCCTTACCTCCC-CGGGTTGCAGCGGAGTAGGTTGAAGATAGTGGATCTTGCCTT
1 GAAGACACCAGCCTTACCTCCCTC-GGTTGCAGCGGAGTAGGTTGAAAATAGCAGATCTTGCCTT
* * * * * **
20836109 CCTGCACCAACAGCGAAGTAGATCGAAGACACTAGCCTTGCCTCCCTGGGTTACAGTGGAGCAGA
65 CCTGCACCAACAGCGAAGCAAATCGAAGAAACCAGCCTTGCCTACCTGGGTTACAGCAGAGCAGA
20836174 TTGAA
130 TTGAA
20836179 GATGGCAGAT
Statistics
Matches: 113, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
144 1 0.01
145 112 0.99
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (145 bp):
GAAGACACCAGCCTTACCTCCCTCGGTTGCAGCGGAGTAGGTTGAAAATAGCAGATCTTGCCTTC
CTGCACCAACAGCGAAGCAAATCGAAGAAACCAGCCTTGCCTACCTGGGTTACAGCAGAGCAGAT
TGAAAATAGCAAATC
Found at i:20836194 original size:88 final size:88
Alignment explanation
Indices: 20836037--20836456 Score: 347
Period size: 88 Copynumber: 4.8 Consensus size: 88
20836027 GGTTGAAAAT
* * * * * * **
20836037 AGCAAATCGAAGACACCAGCCTTACCTCCCCGGGTTGCAGCGGAGTAGGTTGAAGATAGTGGATC
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGATTGAAGATAGCAGATC
*
20836102 TTGCCTTCCTGCACCAACAGCGA
66 TTGCCTTCCTGCACTAACAGCGA
* * * * *
20836125 AGTAGATCGAAGACACTAGCCTTGCCTCCCTGGGTTACAGTGGAGCAGATTGAAGATGGCAGATA
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGATTGAAGATAGCAGATC
* *
20836190 TTGCCTTCCTGTACTGACAGCGA
66 TTGCCTTCCTGCACTAACAGCGA
* * * *** * * *
20836213 AGCAAATCGAAGACACCAGTCTTGCCTTCCTCAACTGACAACGGAGCAGACTGAAGATAGCAGAT
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCT-GGGTTACAGCGGAGCAGATTGAAGATAGCAGAT
* * * *
20836278 CTTGCTTTCCTACACTAATAGTGA
65 CTTGCCTTCCTGCACTAACAGCGA
* * * * ** * * *
20836302 AGCAGATTGAAGACACTAGCCTTGCCTCCATGGGTTGCAGCGGAATAGGTTAAAGATAGTAGATC
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGATTGAAGATAGCAGATC
* ** * *
20836367 TTGCATTCCTATACTGACAGTGA
66 TTGCCTTCCTGCACTAACAGCGA
* * * * * * * * *
20836390 AGCAGATTGAAGACACTAGCCTGGCCTTCCTGGATTGCAGCAGAGCAGGTTGAAAATTA-CAGAT
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGATTGAAGA-TAGCAGAT
20836454 CTT
65 CTT
20836457 ATCTCCCTAA
Statistics
Matches: 262, Mismatches: 68, Indels: 4
0.78 0.20 0.01
Matches are distributed among these distances:
88 193 0.74
89 69 0.26
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.23
Consensus pattern (88 bp):
AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCGGAGCAGATTGAAGATAGCAGATC
TTGCCTTCCTGCACTAACAGCGA
Found at i:20836269 original size:44 final size:45
Alignment explanation
Indices: 20836184--20836288 Score: 106
Period size: 44 Copynumber: 2.4 Consensus size: 45
20836174 TTGAAGATGG
* ** *
20836184 CAGATATTGCCTTCCTGTACTGACAGCGAAGCAAATCGAAGACAC
1 CAGATCTTGCCTTCCTCAACTGACAACGAAGCAAATCGAAGACAC
* * * *
20836229 CAG-TCTTGCCTTCCTCAACTGACAACGGAGCAGA-CTGAAGATAG
1 CAGATCTTGCCTTCCTCAACTGACAACGAAGCAAATC-GAAGACAC
*
20836273 CAGATCTTGCTTTCCT
1 CAGATCTTGCCTTCCT
20836289 ACACTAATAG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
43 1 0.02
44 34 0.69
45 14 0.29
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (45 bp):
CAGATCTTGCCTTCCTCAACTGACAACGAAGCAAATCGAAGACAC
Found at i:20836304 original size:89 final size:89
Alignment explanation
Indices: 20836087--20836328 Score: 225
Period size: 89 Copynumber: 2.7 Consensus size: 89
20836077 CGGAGTAGGT
** * * * * * *
20836087 TGAAGATAGTGGATCTTGCCTTCCTGCACCAACAGCGAAGTAGATCGAAGACACTAGCCTTGCCT
1 TGAAGATAGCAGATATTGCCTTCCTACACTAACAGCGAAGCAAATCGAAGACACCAGCCTTGCCT
* *** * ** *
20836152 CCCT-GGGTTACAGTGGAGCAGAT
66 TCCTCAACTGACAACGGAGCAGAC
* ** * *
20836175 TGAAGATGGCAGATATTGCCTTCCTGTACTGACAGCGAAGCAAATCGAAGACACCAGTCTTGCCT
1 TGAAGATAGCAGATATTGCCTTCCTACACTAACAGCGAAGCAAATCGAAGACACCAGCCTTGCCT
20836240 TCCTCAACTGACAACGGAGCAGAC
66 TCCTCAACTGACAACGGAGCAGAC
* * * * * * *
20836264 TGAAGATAGCAGATCTTGCTTTCCTACACTAATAGTGAAGCAGATTGAAGACACTAGCCTTGCCT
1 TGAAGATAGCAGATATTGCCTTCCTACACTAACAGCGAAGCAAATCGAAGACACCAGCCTTGCCT
20836329 CCATGGGTTG
Statistics
Matches: 122, Mismatches: 31, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
88 57 0.47
89 65 0.53
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (89 bp):
TGAAGATAGCAGATATTGCCTTCCTACACTAACAGCGAAGCAAATCGAAGACACCAGCCTTGCCT
TCCTCAACTGACAACGGAGCAGAC
Done.