Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 82 of 150
Found at i:25229530 original size:112 final size:111
Alignment explanation
Indices: 25229396--25229621 Score: 416
Period size: 112 Copynumber: 2.0 Consensus size: 111
25229386 CTTGAATGGT
25229396 CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTAAAATCAAATAGT
1 CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTAAAATCAAATAGT
25229461 GAACAAATTTTACATCTTTTACGATTTAGTCCTTTTTAATTCATTAA
66 GAACAAATTTTACATCTTTTACGATTTAGTCC-TTTTAATTCATTAA
* *
25229508 CTAATTACCATTTAGGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTGAAATCAAATAGT
1 CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTAAAATCAAATAGT
*
25229573 GATCAAATTTTACATCTTTTACGATTTAGTCCTTTTAATTCATTAA
66 GAACAAATTTTACATCTTTTACGATTTAGTCCTTTTAATTCATTAA
25229619 CTA
1 CTA
25229622 TGGAAACGTT
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
111 17 0.15
112 94 0.85
ACGTcount: A:0.34, C:0.18, G:0.05, T:0.43
Consensus pattern (111 bp):
CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTAAAATCAAATAGT
GAACAAATTTTACATCTTTTACGATTTAGTCCTTTTAATTCATTAA
Found at i:25232619 original size:5 final size:5
Alignment explanation
Indices: 25232603--25232708 Score: 55
Period size: 5 Copynumber: 21.0 Consensus size: 5
25232593 TGTAATAAAA
* *
25232603 ATTAT A-TAT ATTAT ATT-T -TTAGT AATA- ATTAT ATTAT ATTAT ATTTT
1 ATTAT ATTAT ATTAT ATTAT ATTA-T ATTAT ATTAT ATTAT ATTAT ATTAT
*
25232650 ATT-T ATTAGT AATAGT -TATAT ATTAT ATTAT AGTATAGT ATTACT A-TAT
1 ATTAT ATTA-T ATTA-T AT-TAT ATTAT ATTAT A-T-TA-T ATTA-T ATTAT
*
25232699 AATAT ATTAT
1 ATTAT ATTAT
25232709 CATTGAAGTT
Statistics
Matches: 81, Mismatches: 7, Indels: 26
0.71 0.06 0.23
Matches are distributed among these distances:
3 2 0.02
4 14 0.17
5 44 0.54
6 16 0.20
7 3 0.04
8 2 0.02
ACGTcount: A:0.40, C:0.01, G:0.05, T:0.55
Consensus pattern (5 bp):
ATTAT
Found at i:25232630 original size:30 final size:33
Alignment explanation
Indices: 25232571--25232681 Score: 97
Period size: 33 Copynumber: 3.4 Consensus size: 33
25232561 TGTAATACTA
* * *
25232571 TATATTTTGTTATAATTTATATTGTAATAA-AAAT
1 TATATTATATTAT-ATTTAT-TAGTAATAATAAAT
*
25232605 TATA-TATATTATATTT-TTAGTAATAATTATAT
1 TATATTATATTATATTTATTAGTAATAA-TAAAT
* * *
25232637 TATATTATATTTTATTTATTAGTAATAGT-TA-
1 TATATTATATTATATTTATTAGTAATAATAAAT
25232668 TATATTATATTATA
1 TATATTATATTATA
25232682 GTATAGTATT
Statistics
Matches: 66, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
30 8 0.12
31 14 0.21
32 13 0.20
33 18 0.27
34 13 0.20
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (33 bp):
TATATTATATTATATTTATTAGTAATAATAAAT
Found at i:25232668 original size:24 final size:23
Alignment explanation
Indices: 25232630--25232688 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 23
25232620 TTTAGTAATA
* *
25232630 ATTATATTATA-TTATATTTTAT
1 ATTATAGTATAGTTATATATTAT
25232652 -TTATTAGTAATAGTTATATATTAT
1 ATTA-TAGT-ATAGTTATATATTAT
25232676 ATTATAGTATAGT
1 ATTATAGTATAGT
25232689 ATTACTATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
21 3 0.10
22 3 0.10
23 8 0.26
24 14 0.45
25 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (23 bp):
ATTATAGTATAGTTATATATTAT
Found at i:25232669 original size:34 final size:35
Alignment explanation
Indices: 25232603--25232686 Score: 111
Period size: 36 Copynumber: 2.5 Consensus size: 35
25232593 TGTAATAAAA
25232603 ATTATA-TATATTATATTTTTAGTAATAA-T-TAT
1 ATTATATTATATTATATTTTTAGTAATAATTATAT
* *
25232635 ATTATATTATATTTTATTTATTAGTAATAGTTATAT
1 ATTATATTATATTATATTT-TTAGTAATAATTATAT
*
25232671 ATTATATTATAGTATA
1 ATTATATTATATTATA
25232687 GTATTACTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
32 6 0.14
33 11 0.25
34 9 0.20
35 1 0.02
36 17 0.39
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (35 bp):
ATTATATTATATTATATTTTTAGTAATAATTATAT
Found at i:25232675 original size:31 final size:33
Alignment explanation
Indices: 25232603--25232681 Score: 103
Period size: 31 Copynumber: 2.5 Consensus size: 33
25232593 TGTAATAAAA
*
25232603 ATTATA-TATATTATATTTTTAGTAATAATTAT
1 ATTATATTATATTATATTTTTAGTAATAAGTAT
*
25232635 ATTATATTATATTTTATTTATTAGTAAT-AGT-T
1 ATTATATTATATTATATTT-TTAGTAATAAGTAT
25232667 A-TATATTATATTATA
1 ATTATATTATATTATA
25232682 GTATAGTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
31 13 0.31
32 8 0.19
33 13 0.31
34 8 0.19
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (33 bp):
ATTATATTATATTATATTTTTAGTAATAAGTAT
Found at i:25232699 original size:18 final size:17
Alignment explanation
Indices: 25232632--25232708 Score: 54
Period size: 18 Copynumber: 4.5 Consensus size: 17
25232622 TAGTAATAAT
* *
25232632 TATATTATATTATATTT
1 TATATTATATTATAGTA
*
25232649 TAT-TTATTAGTAATAGTTA
1 TATATTA-TA-TTATAG-TA
25232668 TATATTATATTATAGTA
1 TATATTATATTATAGTA
25232685 TAGTATTACTA-TATA--A
1 TA-TATTA-TATTATAGTA
25232701 TATATTAT
1 TATATTAT
25232709 CATTGAAGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
14 1 0.02
15 5 0.10
16 6 0.12
17 9 0.18
18 18 0.36
19 8 0.16
20 3 0.06
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.55
Consensus pattern (17 bp):
TATATTATATTATAGTA
Found at i:25232801 original size:16 final size:17
Alignment explanation
Indices: 25232780--25232812 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
25232770 ATAATTATAG
25232780 TATTAAA-AATATTTTA
1 TATTAAATAATATTTTA
25232796 TATTAAATTAATATTTT
1 TATTAAA-TAATATTTT
25232813 TAAAATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTAAATAATATTTTA
Found at i:25233433 original size:20 final size:18
Alignment explanation
Indices: 25233386--25233423 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
25233376 GTGGTCATGC
25233386 CTTAATTTTTGAGATTAA
1 CTTAATTTTTGAGATTAA
25233404 CTTAATTTTTGAGATTAA
1 CTTAATTTTTGAGATTAA
25233422 CT
1 CT
25233424 GTGCATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.50
Consensus pattern (18 bp):
CTTAATTTTTGAGATTAA
Found at i:25236323 original size:40 final size:39
Alignment explanation
Indices: 25236194--25236421 Score: 179
Period size: 41 Copynumber: 5.7 Consensus size: 39
25236184 CACTTAATTA
* * * *
25236194 TACCCCTAAATTACA-TTACATGCCCCTGTTTGTACTTCGA
1 TACCCCTGAATTGCACTTACGTG-CCCTG-TTGTACTTCGG
* ** * * *
25236234 TACCCTTGAATTATAGTTATGTGCTACTGTTTGTACTTCGG
1 TACCCCTGAATTGCACTTACGTGC-CCTG-TTGTACTTCGG
* * * *
25236275 TACTCCTGAACTGCACTTACGTGCCCTTGTTGCACTTCAG
1 TACCCCTGAATTGCACTTACGTGCCC-TGTTGTACTTCGG
* * * * *
25236315 TACCCCTGAATTGCACTTATGTACCCCTATTGTACTTTGA
1 TACCCCTGAATTGCACTTACGT-GCCCTGTTGTACTTCGG
* *
25236355 TACCCCTGAATTGCTCTTACGTGCCACTGTTTGTACTTTGG
1 TACCCCTGAATTGCACTTACGTGCC-CTG-TTGTACTTCGG
*
25236396 TACCCCTGAATTGCACATACGTGCCC
1 TACCCCTGAATTGCACTTACGTGCCC
25236422 CTATTTACAC
Statistics
Matches: 149, Mismatches: 33, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
39 2 0.01
40 73 0.49
41 74 0.50
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36
Consensus pattern (39 bp):
TACCCCTGAATTGCACTTACGTGCCCTGTTGTACTTCGG
Found at i:25236330 original size:21 final size:20
Alignment explanation
Indices: 25236274--25236411 Score: 79
Period size: 21 Copynumber: 6.8 Consensus size: 20
25236264 TTGTACTTCG
* *
25236274 GTACTCCTGAACTGCACTTA
1 GTACCCCTGAATTGCACTTA
* *
25236294 CGTGCCCTTG--TTGCACTTCA
1 -GTACCCCTGAATTGCACTT-A
25236314 GTACCCCTGAATTGCACTTA
1 GTACCCCTGAATTGCACTTA
* *
25236334 TGTACCCCT--ATTGTACTTT
1 -GTACCCCTGAATTGCACTTA
*
25236353 GATACCCCTGAATTGCTCTTA
1 G-TACCCCTGAATTGCACTTA
* * * * *
25236374 CGTGCCACTG-TTTGTACTTTG
1 -GTACCCCTGAATTGCAC-TTA
25236395 GTACCCCTGAATTGCAC
1 GTACCCCTGAATTGCAC
25236412 ATACGTGCCC
Statistics
Matches: 86, Mismatches: 21, Indels: 20
0.68 0.17 0.16
Matches are distributed among these distances:
18 1 0.01
19 29 0.34
20 13 0.15
21 42 0.49
22 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.35
Consensus pattern (20 bp):
GTACCCCTGAATTGCACTTA
Found at i:25236400 original size:41 final size:41
Alignment explanation
Indices: 25236194--25236420 Score: 201
Period size: 40 Copynumber: 5.6 Consensus size: 41
25236184 CACTTAATTA
* * * * *
25236194 TACCCCTAAATTACA-TTACATGCCCCTGTTTGTACTTCGA
1 TACCCCTGAATTGCACTTACGTGCCACTGTTTGTACTTCGG
* ** * * *
25236234 TACCCTTGAATTATAGTTATGTGCTACTGTTTGTACTTCGG
1 TACCCCTGAATTGCACTTACGTGCCACTGTTTGTACTTCGG
* * * *
25236275 TACTCCTGAACTGCACTTACGTGCC-CT-TGTTGCACTTCAG
1 TACCCCTGAATTGCACTTACGTGCCACTGT-TTGTACTTCGG
* * * * * *
25236315 TACCCCTGAATTGCACTTATGTACCCCT-ATTGTACTTTGA
1 TACCCCTGAATTGCACTTACGTGCCACTGTTTGTACTTCGG
* *
25236355 TACCCCTGAATTGCTCTTACGTGCCACTGTTTGTACTTTGG
1 TACCCCTGAATTGCACTTACGTGCCACTGTTTGTACTTCGG
*
25236396 TACCCCTGAATTGCACATACGTGCC
1 TACCCCTGAATTGCACTTACGTGCC
25236421 CCTATTTACA
Statistics
Matches: 148, Mismatches: 35, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
39 1 0.01
40 75 0.51
41 72 0.49
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36
Consensus pattern (41 bp):
TACCCCTGAATTGCACTTACGTGCCACTGTTTGTACTTCGG
Found at i:25247518 original size:25 final size:25
Alignment explanation
Indices: 25247473--25247544 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
25247463 TAGGCCCATT
* *
25247473 TTCACAACTCGTGTGAA-CATACCGA
1 TTCACAGCTCATGT-AAGCATACCGA
*
25247498 TTTACAGCTCATGTAAGCATACCGA
1 TTCACAGCTCATGTAAGCATACCGA
*
25247523 TTCACAGCTCGTGTAAGCATAC
1 TTCACAGCTCATGTAAGCATAC
25247545 ATGTATAGGA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
24 2 0.05
25 39 0.95
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (25 bp):
TTCACAGCTCATGTAAGCATACCGA
Found at i:25266215 original size:15 final size:16
Alignment explanation
Indices: 25266195--25266224 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25266185 AATTTTAAAG
25266195 TAGTG-AAATAATTAT
1 TAGTGAAAATAATTAT
25266210 TAGTGAAAATAATTA
1 TAGTGAAAATAATTA
25266225 ATTTGGCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (16 bp):
TAGTGAAAATAATTAT
Found at i:25266270 original size:14 final size:11
Alignment explanation
Indices: 25266236--25266265 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
25266226 TTTGGCTCGA
25266236 AAAATAATTTT
1 AAAATAATTTT
25266247 AAAATAATTTT
1 AAAATAATTTT
25266258 AAAATAAT
1 AAAATAAT
25266266 AATTTACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AAAATAATTTT
Found at i:25271043 original size:50 final size:50
Alignment explanation
Indices: 25270916--25271207 Score: 246
Period size: 50 Copynumber: 5.7 Consensus size: 50
25270906 GATAATAACA
* * ** * **
25270916 TGCCAAAGCCATGACCCAGACATGGTCTTACATGGGATGTTTC-T-TGAAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-AGG
* * * * * ** *
25270965 TGCCAATGCCATATCCAAGATATGGTCTTATATGGGAGTTCTCATATTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* * ** * *
25271015 TGCCCACGCCATGTCCCAGACATTGTCTTACCGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* * * * *
25271065 TGCCAACGCCATCTCCCAGATATGGTCATACATGGGACCTCTTATCTAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* *
25271115 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T--A-GG
*
25271171 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
25271208 TCTCATCCCC
Statistics
Matches: 192, Mismatches: 43, Indels: 9
0.79 0.18 0.04
Matches are distributed among these distances:
49 34 0.18
50 119 0.62
51 1 0.01
53 1 0.01
55 1 0.01
56 36 0.19
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
Found at i:25275948 original size:13 final size:13
Alignment explanation
Indices: 25275930--25275955 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25275920 ATTCTAAGAG
25275930 GAAATAATTTCAA
1 GAAATAATTTCAA
25275943 GAAATAATTTCAA
1 GAAATAATTTCAA
25275956 TTTTTCTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (13 bp):
GAAATAATTTCAA
Found at i:25276683 original size:13 final size:14
Alignment explanation
Indices: 25276663--25276697 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
25276653 CTCTATGAGA
*
25276663 TCTTCTTCTTCTTC
1 TCTTCTTCTGCTTC
25276677 T-TTCTTCTGCTTC
1 TCTTCTTCTGCTTC
25276690 TCTTCTTC
1 TCTTCTTC
25276698 GGGATCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.00, C:0.34, G:0.03, T:0.63
Consensus pattern (14 bp):
TCTTCTTCTGCTTC
Found at i:25277612 original size:25 final size:26
Alignment explanation
Indices: 25277583--25277638 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
25277573 TTAATTAGTA
*
25277583 TAAAATATTAAA-AATTCAAT-AAAT
1 TAAAATATTAAATAATTAAATAAAAT
25277607 TGAAAA-ATTAAATAATTAAATAAAAT
1 T-AAAATATTAAATAATTAAATAAAAT
25277633 TAAAAT
1 TAAAAT
25277639 TTAGGAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 7 0.26
25 15 0.56
26 5 0.19
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (26 bp):
TAAAATATTAAATAATTAAATAAAAT
Found at i:25292416 original size:51 final size:51
Alignment explanation
Indices: 25292361--25292463 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 51
25292351 AAACTTTTGT
* *
25292361 AGGTTAATTAATTATTTAATATTGTAGGTACGAAGGTGATAGTTTACATTG
1 AGGTTAATTAATTAATTAATATTGTAGGTACAAAGGTGATAGTTTACATTG
* *
25292412 AGGTTAATTAATTAATTAATCTTGTAGGTACAAAGGTGATAGTTTGCATTG
1 AGGTTAATTAATTAATTAATATTGTAGGTACAAAGGTGATAGTTTACATTG
25292463 A
1 A
25292464 TCATGCAGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (51 bp):
AGGTTAATTAATTAATTAATATTGTAGGTACAAAGGTGATAGTTTACATTG
Found at i:25298983 original size:56 final size:50
Alignment explanation
Indices: 25298842--25299012 Score: 164
Period size: 50 Copynumber: 3.3 Consensus size: 50
25298832 CATGTCTTAA
** * * *
25298842 ACATGGTCTTACGGGGGACCTCTCATCTCGG-CGCCAACGCCATGTCCCAG
1 ACATGGTCTTACATGAGACCTCTCGTCT-GGATGCCAACGCCATGTCCCAG
* * *
25298892 ACATGGTCTGACATGGGACCTCTCGTCTTGATGCCAACGCCATGTCCCAG
1 ACATGGTCTTACATGAGACCTCTCGTCTGGATGCCAACGCCATGTCCCAG
* * * *
25298942 GCATGGTCTTACATGAGACCTCTCATGATCTCAAGGATGCCAATGCCATATCCCAA
1 ACATGGTCTTACATGAGACCTCTC--G-TCT---GGATGCCAACGCCATGTCCCAG
25298998 ACATGGTCTTACATG
1 ACATGGTCTTACATG
25299013 GGATCTCTTT
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
49 1 0.01
50 63 0.63
52 1 0.01
53 3 0.03
56 32 0.32
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (50 bp):
ACATGGTCTTACATGAGACCTCTCGTCTGGATGCCAACGCCATGTCCCAG
Found at i:25301881 original size:18 final size:18
Alignment explanation
Indices: 25301859--25301902 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
25301849 CTCTTTCTTT
*
25301859 CTCTTCTTCAACAACTTC
1 CTCTTCTGCAACAACTTC
* * *
25301877 TTCTTCAGCAACAATTTC
1 CTCTTCTGCAACAACTTC
25301895 CTCTTCTG
1 CTCTTCTG
25301903 TAGCAGCAGC
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.34, G:0.05, T:0.41
Consensus pattern (18 bp):
CTCTTCTGCAACAACTTC
Found at i:25312667 original size:25 final size:25
Alignment explanation
Indices: 25312638--25312757 Score: 127
Period size: 25 Copynumber: 4.8 Consensus size: 25
25312628 GCAGATACTC
*
25312638 TATAGCTCGTGAGAGCATACTAATT
1 TATAGCTCGTGAGAGCATACCAATT
*
25312663 TATAGCTCGTAAGAGCATACCAATT
1 TATAGCTCGTGAGAGCATACCAATT
* *
25312688 TATAGCTCGTGAGAGCATACCGATC
1 TATAGCTCGTGAGAGCATACCAATT
* * *
25312713 TACAGCTCG-AATGAGCATACCGATT
1 TATAGCTCGTGA-GAGCATACCAATT
* *
25312738 CACAGCTCGT-ACGAGCATAC
1 TATAGCTCGTGA-GAGCATAC
25312758 ATTTGCATGA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
24 1 0.01
25 82 0.99
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (25 bp):
TATAGCTCGTGAGAGCATACCAATT
Found at i:25312720 original size:50 final size:50
Alignment explanation
Indices: 25312638--25312757 Score: 145
Period size: 50 Copynumber: 2.4 Consensus size: 50
25312628 GCAGATACTC
* * *
25312638 TATAGCTCGTGAGAGCATACTAATTTATAGCTCGTAA-GAGCATACCAATT
1 TATAGCTCGTGAGAGCATACCAATCTACAGCTCG-AATGAGCATACCAATT
* *
25312688 TATAGCTCGTGAGAGCATACCGATCTACAGCTCGAATGAGCATACCGATT
1 TATAGCTCGTGAGAGCATACCAATCTACAGCTCGAATGAGCATACCAATT
* *
25312738 CACAGCTCGT-ACGAGCATAC
1 TATAGCTCGTGA-GAGCATAC
25312758 ATTTGCATGA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
49 3 0.05
50 58 0.95
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (50 bp):
TATAGCTCGTGAGAGCATACCAATCTACAGCTCGAATGAGCATACCAATT
Found at i:25313433 original size:22 final size:22
Alignment explanation
Indices: 25313389--25313429 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
25313379 TATGTATATA
25313389 AGTAACCTTAAAATGGTTGATG
1 AGTAACCTTAAAATGGTTGATG
*
25313411 AGTAA-CTTAATATGGTTGA
1 AGTAACCTTAAAATGGTTGA
25313430 ATGATGGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (22 bp):
AGTAACCTTAAAATGGTTGATG
Found at i:25320991 original size:21 final size:22
Alignment explanation
Indices: 25320955--25320995 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
25320945 TATGTATATA
25320955 AGTAACCTTAAAATGGTTGACG
1 AGTAACCTTAAAATGGTTGACG
*
25320977 AGTAA-CTTAATATGGTTGA
1 AGTAACCTTAAAATGGTTGA
25320996 ATGATGGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.32
Consensus pattern (22 bp):
AGTAACCTTAAAATGGTTGACG
Found at i:25321467 original size:42 final size:42
Alignment explanation
Indices: 25321408--25321502 Score: 163
Period size: 42 Copynumber: 2.3 Consensus size: 42
25321398 TATTTTTGTC
* *
25321408 CACACGGGCAGAGACACAGACGTGTGTGTCAGCCACGTGTGA
1 CACACGGCCAGAGACACAGACGTGTGTCTCAGCCACGTGTGA
*
25321450 CACACGGCCAGAGACACAGGCGTGTGTCTCAGCCACGTGTGA
1 CACACGGCCAGAGACACAGACGTGTGTCTCAGCCACGTGTGA
25321492 CACACGGCCAG
1 CACACGGCCAG
25321503 GTCACACGGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.25, C:0.31, G:0.32, T:0.13
Consensus pattern (42 bp):
CACACGGCCAGAGACACAGACGTGTGTCTCAGCCACGTGTGA
Found at i:25327064 original size:15 final size:15
Alignment explanation
Indices: 25327044--25327074 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25327034 CTTTTTCCCT
25327044 AAATCTGTCCAACAC
1 AAATCTGTCCAACAC
*
25327059 AAATCTGTCCTACAC
1 AAATCTGTCCAACAC
25327074 A
1 A
25327075 TGTAGCACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.32, G:0.06, T:0.23
Consensus pattern (15 bp):
AAATCTGTCCAACAC
Found at i:25344880 original size:21 final size:22
Alignment explanation
Indices: 25344836--25344885 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
25344826 ACGCCTACAA
25344836 TAAACACATTAAAATGAGCTTAT
1 TAAACACATTAAAA-GAGCTTAT
25344859 TAAACACATGTAAAA-A-CTTAT
1 TAAACACAT-TAAAAGAGCTTAT
25344880 TAAACA
1 TAAACA
25344886 TAACACACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 11 0.42
22 1 0.04
23 9 0.35
24 5 0.19
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (22 bp):
TAAACACATTAAAAGAGCTTAT
Found at i:25360340 original size:51 final size:50
Alignment explanation
Indices: 25360215--25360402 Score: 189
Period size: 51 Copynumber: 3.7 Consensus size: 50
25360205 TATCATTCGA
* * * * ** **
25360215 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAAATTTTTGG
1 TACACATAGTAGCCTGCACATAGTACTACACACATGACCAAAACCTTCAG
* *
25360265 TTCACATAGTAGCCTCCACATAGTACTACACACATGACCAAAACCTTCCAG
1 TACACATAGTAGCCTGCACATAGTACTACACACATGACCAAAACCTT-CAG
** ** *
25360316 TACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCTAGTGA-
1 TACACATAGTAGCCTGCACATAGTACTACACACATGACCAAAACCT--TCAG
* *
25360367 TACACGTAGTAGCCTGCACTTAGTACTACACACATG
1 TACACATAGTAGCCTGCACATAGTACTACACACATG
25360403 TTTATAGGCA
Statistics
Matches: 115, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
50 40 0.35
51 73 0.63
52 1 0.01
53 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (50 bp):
TACACATAGTAGCCTGCACATAGTACTACACACATGACCAAAACCTTCAG
Found at i:25360347 original size:26 final size:26
Alignment explanation
Indices: 25360316--25360398 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 26
25360306 AACCTTCCAG
25360316 TACACATAGTAGCCTGCACATAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
* *
25360342 TACACAT-GT-GACCAT-TACCTAGTGA-
1 TACACATAGTAG-CC-TGCACATAGT-AC
* *
25360367 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
25360393 TACACA
1 TACACA
25360399 CATGTTTATA
Statistics
Matches: 44, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
24 1 0.02
25 18 0.41
26 24 0.55
27 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACATAGTAC
Found at i:25362327 original size:21 final size:20
Alignment explanation
Indices: 25362298--25362343 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
25362288 CGAAAGGAAA
25362298 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
25362319 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
25362339 T-AACC
1 TCAACC
25362344 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:25362930 original size:14 final size:14
Alignment explanation
Indices: 25362911--25362937 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25362901 CATTTCTTGT
25362911 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
25362925 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
25362938 ACTGGACCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:25366646 original size:13 final size:14
Alignment explanation
Indices: 25366618--25366657 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
25366608 ATAAAGCTGA
25366618 TAATAATTAATATAT
1 TAATAATT-ATATAT
*
25366633 ATTATAATTATATAT
1 -TAATAATTATATAT
25366648 TAATAATTAT
1 TAATAATTAT
25366658 CACCTTTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 9 0.41
15 6 0.27
16 7 0.32
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATAATTATATAT
Found at i:25374851 original size:19 final size:20
Alignment explanation
Indices: 25374813--25374851 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
25374803 ATTTTTAAGG
*
25374813 TTAAAATGGTAAATAGGTAA
1 TTAAAATGGTAAATAAGTAA
*
25374833 TTAAAAT-GTAATTAAGTAA
1 TTAAAATGGTAAATAAGTAA
25374852 AGAAAAATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.33
Consensus pattern (20 bp):
TTAAAATGGTAAATAAGTAA
Found at i:25375547 original size:25 final size:25
Alignment explanation
Indices: 25375519--25375594 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
25375509 TCAGTGAGTT
25375519 ACACTGCCTAGCACACGGGCATGTC
1 ACACTGCCTAGCACACGGGCATGTC
* * * *
25375544 ACAC-G--GAGCAACTCAGTG-A-GTT
1 ACACTGCCTAGC-ACAC-GGGCATGTC
25375566 ACACTGCCTAGCACACGGGCATGTC
1 ACACTGCCTAGCACACGGGCATGTC
25375591 ACAC
1 ACAC
25375595 GGCCATGTGT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 9 0.25
23 7 0.19
24 7 0.19
25 13 0.36
ACGTcount: A:0.28, C:0.33, G:0.24, T:0.16
Consensus pattern (25 bp):
ACACTGCCTAGCACACGGGCATGTC
Found at i:25375570 original size:47 final size:47
Alignment explanation
Indices: 25375462--25375596 Score: 199
Period size: 47 Copynumber: 3.0 Consensus size: 47
25375452 TTCTTAGGGT
* * * *
25375462 GCAAGTCAGTGAGTTACACGGCCTGGCACACGGGCGTGT-----GGA
1 GCAACTCAGTGAGTTACACTGCCTAGCACACGGGCATGTCACACGGA
25375504 GCAACTCAGTGAGTTACACTGCCTAGCACACGGGCATGTCACACGGA
1 GCAACTCAGTGAGTTACACTGCCTAGCACACGGGCATGTCACACGGA
25375551 GCAACTCAGTGAGTTACACTGCCTAGCACACGGGCATGTCACACGG
1 GCAACTCAGTGAGTTACACTGCCTAGCACACGGGCATGTCACACGG
25375597 CCATGTGTCC
Statistics
Matches: 84, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
42 35 0.42
47 49 0.58
ACGTcount: A:0.25, C:0.28, G:0.30, T:0.17
Consensus pattern (47 bp):
GCAACTCAGTGAGTTACACTGCCTAGCACACGGGCATGTCACACGGA
Found at i:25392783 original size:42 final size:42
Alignment explanation
Indices: 25392718--25392816 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 42
25392708 GTGGATACTT
*
25392718 CACAGCTCATGTGAACAGCATCATGTAGCTTACA-TTCGGACC
1 CACAGCTCATGTGAGCAGCATCATGTAGCTTACATTTC-GACC
* *
25392760 CACAGCTCGTGTGAGCAGTATCATGTAGCTTACATTTCGACC
1 CACAGCTCATGTGAGCAGCATCATGTAGCTTACATTTCGACC
* *
25392802 CACGGCTCCTGTGAG
1 CACAGCTCATGTGAG
25392817 TAGGCCCATT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 48 0.94
43 3 0.06
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (42 bp):
CACAGCTCATGTGAGCAGCATCATGTAGCTTACATTTCGACC
Found at i:25393551 original size:39 final size:39
Alignment explanation
Indices: 25393466--25393551 Score: 95
Period size: 39 Copynumber: 2.2 Consensus size: 39
25393456 TTTAGGATCG
* * *
25393466 AATATTATTATAATTAATGTAATTGTATTTTTTTTGTCA
1 AATATTATTATAATTAATGTAATTATATTTATTTGGTCA
* *
25393505 AACATTATTATAATT-ATGGTAATTATA-TTATTTGGTTA
1 AATATTATTATAATTAAT-GTAATTATATTTATTTGGTCA
25393543 AATTATTAT
1 AA-TATTAT
25393552 GATTTGATTC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
38 12 0.31
39 27 0.69
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.53
Consensus pattern (39 bp):
AATATTATTATAATTAATGTAATTATATTTATTTGGTCA
Found at i:25402957 original size:269 final size:270
Alignment explanation
Indices: 25402466--25402993 Score: 977
Period size: 269 Copynumber: 2.0 Consensus size: 270
25402456 GCTAATATAT
* *
25402466 ATAAATAAACGAATTGCTTCCAAAATCTTTGTCAAGCATGATTTACAGATACATCCTCCCAGCAT
1 ATAAATAAACGAATTGCTTCCAAAAACTTTGTCAAGCATGATTTACAGATACATCCTCCAAGCAT
*
25402531 AATAATGCTCTAATACATTAACAAAAACAAACTTCACTAACTGGAAAAATTTAGCATGCTGGTTG
66 AATAATACTCTAATACATTAACAAAAACAAACTTCACTAACTGGAAAAATTTAGCATGCTGGTTG
*
25402596 TGTTCTACCTGTTTAAAATCCAATTCTCGAAAGTAAATTTTACTCTAGCATCCCCCAATGGTGCA
131 TGTTCTACCTGTTTAAAATCCAATTCTCGAAAGTAAATTTTACCCTAGCATCCCCCAATGGTGCA
*
25402661 TAAAACTGCCTTAAACATGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTGC
196 TAAAACTGCCTTAAACAAGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTGC
25402726 TTCCAAATAA
261 TTCCAAATAA
*
25402736 ATAAATAAATGAATTGCTTCCAAAAACTTTGTCAAGCATGATTTACAGATACATCCTCCAAGCAT
1 ATAAATAAACGAATTGCTTCCAAAAACTTTGTCAAGCATGATTTACAGATACATCCTCCAAGCAT
25402801 AATAATACTCTAATACATTAACAAAAACAAACTTCACTAACTGG-AAAATTTAGCATGCTGGTTG
66 AATAATACTCTAATACATTAACAAAAACAAACTTCACTAACTGGAAAAATTTAGCATGCTGGTTG
* *
25402865 TGTTCTACCTGTTTAAAATCCAATTCTTGAAAGTAAATTTTACCCTAGCATCCCCCACTGGTGCA
131 TGTTCTACCTGTTTAAAATCCAATTCTCGAAAGTAAATTTTACCCTAGCATCCCCCAATGGTGCA
25402930 TAAAACTGCCTTAAACAAGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTG
196 TAAAACTGCCTTAAACAAGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTG
25402994 TCAAGGGCAC
Statistics
Matches: 250, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
269 145 0.58
270 105 0.42
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (270 bp):
ATAAATAAACGAATTGCTTCCAAAAACTTTGTCAAGCATGATTTACAGATACATCCTCCAAGCAT
AATAATACTCTAATACATTAACAAAAACAAACTTCACTAACTGGAAAAATTTAGCATGCTGGTTG
TGTTCTACCTGTTTAAAATCCAATTCTCGAAAGTAAATTTTACCCTAGCATCCCCCAATGGTGCA
TAAAACTGCCTTAAACAAGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTGC
TTCCAAATAA
Found at i:25411828 original size:144 final size:142
Alignment explanation
Indices: 25411560--25411849 Score: 447
Period size: 144 Copynumber: 2.0 Consensus size: 142
25411550 AATTCAACTG
* * * *
25411560 TGCATCTTAATGGTAGCAAAGTTTTAATTTTAAATACTTTTTAGCGTAGAGAGGAGCAATGCAAG
1 TGCATCTTAATGGTAGCAAAGGTTTAATTTTAAATAC-TTTTAGCCTAGAGAAGAGCAATGAAAG
* *
25411625 GTTGGAATCCTCTCTCCCCTCTTAGACTTCCTTATATGTATTTAGGAAAAGATAACAGGCATCTA
65 GTTGGAATCCTCTATCCCCTCTTAGACTTCCTAATATGTATTTAGGAAAAGATAACAGGCATCTA
25411690 CCATCAGTACATA
130 CCATCAGTACATA
*
25411703 TGCATCTTAAATGGTAGGAAAGGTTTAATTTTAAATTAAC-TTTAGCCTAGAGAAGAGCAATGAA
1 TGCATCTT-AATGGTAGCAAAGGTTTAATTTTAAA-T-ACTTTTAGCCTAGAGAAGAGCAATGAA
**
25411767 AGGTTGGAATCCTCTATCCCCTCTTAGACTTCCTAATATGTATTTAGGAAGGGATAACAGGCATC
63 AGGTTGGAATCCTCTATCCCCTCTTAGACTTCCTAATATGTATTTAGGAAAAGATAACAGGCATC
*
25411832 TATCATCAGTACATA
128 TACCATCAGTACATA
25411847 TGC
1 TGC
25411850 CTCATAATTC
Statistics
Matches: 134, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
143 8 0.06
144 123 0.92
145 1 0.01
146 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Consensus pattern (142 bp):
TGCATCTTAATGGTAGCAAAGGTTTAATTTTAAATACTTTTAGCCTAGAGAAGAGCAATGAAAGG
TTGGAATCCTCTATCCCCTCTTAGACTTCCTAATATGTATTTAGGAAAAGATAACAGGCATCTAC
CATCAGTACATA
Found at i:25416927 original size:16 final size:18
Alignment explanation
Indices: 25416903--25416936 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
25416893 AAAATAATCC
25416903 AAGATAAAAAA-AATTTA
1 AAGATAAAAAACAATTTA
25416920 AAGA-AAAAAACAATTTA
1 AAGATAAAAAACAATTTA
25416937 CCTCAGTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.21
Consensus pattern (18 bp):
AAGATAAAAAACAATTTA
Found at i:25418714 original size:31 final size:32
Alignment explanation
Indices: 25418679--25418759 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 32
25418669 TTAGGGTTAA
*
25418679 GACTAAAATTTTA-AAATTTGAAAAGTACAAG
1 GACTAAAATTTGACAAATTTGAAAAGTACAAG
* * *
25418710 GACT-AGATTTGACCAATTTGAAAAGTACATG
1 GACTAAAATTTGACAAATTTGAAAAGTACAAG
*
25418741 AACTAAAA-TTGATCAAATT
1 GACTAAAATTTGA-CAAATT
25418760 AAATTACAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
30 6 0.15
31 27 0.68
32 7 0.17
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.30
Consensus pattern (32 bp):
GACTAAAATTTGACAAATTTGAAAAGTACAAG
Found at i:25419024 original size:22 final size:22
Alignment explanation
Indices: 25418996--25419039 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
25418986 TGGTGGGTCC
25418996 ATTGAATTAAGTATAATTTGAG
1 ATTGAATTAAGTATAATTTGAG
25419018 ATTGAATTAAGTATAATTTGAG
1 ATTGAATTAAGTATAATTTGAG
25419040 TACCTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (22 bp):
ATTGAATTAAGTATAATTTGAG
Found at i:25421811 original size:16 final size:16
Alignment explanation
Indices: 25421790--25421821 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25421780 GTTTTGTTGC
*
25421790 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
25421806 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
25421822 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:25422204 original size:51 final size:51
Alignment explanation
Indices: 25422044--25422188 Score: 195
Period size: 51 Copynumber: 2.8 Consensus size: 51
25422034 GATACCGGTT
*
25422044 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATA
** * * *
25422095 CACGCAGTAGCCTTCACATAGTACTACACACGTGATCGA--AGCTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCCGATA
*
25422146 CGCATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
25422189 TTCACTTTCA
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
50 3 0.04
51 73 0.92
52 3 0.04
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATA
Found at i:25423646 original size:38 final size:38
Alignment explanation
Indices: 25423610--25423783 Score: 249
Period size: 38 Copynumber: 4.6 Consensus size: 38
25423600 GGCTCAAAGT
* * * ** *
25423610 CTGCTAGGCAATATGCTTGATTAACACTAGCACAAAGC
1 CTGCTAGGCACTAAGCTTGAATAACACCGGCACTAAGC
* *
25423648 CTACTAGGCACTAAGCCTGAATAACACCGGCACTAAGC
1 CTGCTAGGCACTAAGCTTGAATAACACCGGCACTAAGC
*
25423686 CTGCTAGGCACTAAGCCTGAATAACACCGGCACTAAGC
1 CTGCTAGGCACTAAGCTTGAATAACACCGGCACTAAGC
* *
25423724 CTGCTAGGCACTAAGCTTGTATAACACCAGCACTAAGC
1 CTGCTAGGCACTAAGCTTGAATAACACCGGCACTAAGC
25423762 CTGCTAGGCACTAAGCTTGAAT
1 CTGCTAGGCACTAAGCTTGAAT
25423784 CAATACATTC
Statistics
Matches: 123, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 123 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (38 bp):
CTGCTAGGCACTAAGCTTGAATAACACCGGCACTAAGC
Found at i:25423663 original size:16 final size:16
Alignment explanation
Indices: 25423635--25423703 Score: 50
Period size: 16 Copynumber: 4.0 Consensus size: 16
25423625 CTTGATTAAC
*
25423635 ACTA-GCACAAAGCCT
1 ACTAGGCACTAAGCCT
25423650 ACTAGGCACTAAGCCT
1 ACTAGGCACTAAGCCT
*
25423666 GAATAACACCGGCACTAAGCCT
1 -ACT---A--GGCACTAAGCCT
*
25423688 GCTAGGCACTAAGCCT
1 ACTAGGCACTAAGCCT
25423704 GAATAACACC
Statistics
Matches: 43, Mismatches: 4, Indels: 13
0.72 0.07 0.22
Matches are distributed among these distances:
15 4 0.09
16 22 0.51
17 2 0.05
18 1 0.02
20 1 0.02
21 1 0.02
22 12 0.28
ACGTcount: A:0.33, C:0.32, G:0.19, T:0.16
Consensus pattern (16 bp):
ACTAGGCACTAAGCCT
Found at i:25423679 original size:22 final size:22
Alignment explanation
Indices: 25423654--25423726 Score: 95
Period size: 22 Copynumber: 3.6 Consensus size: 22
25423644 AAGCCTACTA
25423654 GGCACTAAGCCTGAATAACACC
1 GGCACTAAGCCTGAATAACACC
*
25423676 GGCACTAAGCCTG-CT---A--
1 GGCACTAAGCCTGAATAACACC
25423692 GGCACTAAGCCTGAATAACACC
1 GGCACTAAGCCTGAATAACACC
25423714 GGCACTAAGCCTG
1 GGCACTAAGCCTG
25423727 CTAGGCACTA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
16 13 0.30
17 1 0.02
18 1 0.02
20 1 0.02
21 1 0.02
22 26 0.60
ACGTcount: A:0.32, C:0.32, G:0.22, T:0.15
Consensus pattern (22 bp):
GGCACTAAGCCTGAATAACACC
Found at i:25423704 original size:16 final size:16
Alignment explanation
Indices: 25423676--25423739 Score: 65
Period size: 16 Copynumber: 3.6 Consensus size: 16
25423666 GAATAACACC
25423676 GGCACTAAGCCTGCTA
1 GGCACTAAGCCTGCTA
*
25423692 GGCACTAAGCCTGAATAACA
1 GGCACTAAGCCTG-CT---A
25423712 CCGGCACTAAGCCTGCTA
1 --GGCACTAAGCCTGCTA
25423730 GGCACTAAGC
1 GGCACTAAGC
25423740 TTGTATAACA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
16 23 0.57
17 1 0.03
18 1 0.03
20 1 0.03
21 1 0.03
22 13 0.32
ACGTcount: A:0.30, C:0.31, G:0.23, T:0.16
Consensus pattern (16 bp):
GGCACTAAGCCTGCTA
Found at i:25426431 original size:31 final size:31
Alignment explanation
Indices: 25426383--25426443 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
25426373 CAGTGTCTCA
25426383 GGCCATGTGGACATTCAAAGTAGGGACACAC
1 GGCCATGTGGACATTCAAAGTAGGGACACAC
* *
25426414 GGCCTTGTGGACGTTCAAAGTAGGGACACA
1 GGCCATGTGGACATTCAAAGTAGGGACACA
25426444 TGGCTGTGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.31, T:0.18
Consensus pattern (31 bp):
GGCCATGTGGACATTCAAAGTAGGGACACAC
Found at i:25427993 original size:2 final size:2
Alignment explanation
Indices: 25427986--25428034 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
25427976 ATGCAATCGG
25427986 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25428028 TA TA TA T
1 TA TA TA T
25428035 GGGAATCCAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:25431666 original size:30 final size:31
Alignment explanation
Indices: 25431630--25431688 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
25431620 TTCGATCTTT
25431630 GGGACAAAAAT-GTAATTATG-CAAAAGTTTA
1 GGGAC-AAAATCGTAATTATGACAAAAGTTTA
*
25431660 GGGACAAAATCGTAATTTTGACAAAAGTT
1 GGGACAAAATCGTAATTATGACAAAAGTT
25431689 GAGTTGAAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 5 0.19
30 13 0.50
31 8 0.31
ACGTcount: A:0.44, C:0.08, G:0.20, T:0.27
Consensus pattern (31 bp):
GGGACAAAATCGTAATTATGACAAAAGTTTA
Found at i:25432337 original size:102 final size:101
Alignment explanation
Indices: 25432157--25432500 Score: 449
Period size: 102 Copynumber: 3.4 Consensus size: 101
25432147 AATCGATGAA
* * *
25432157 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGTATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
25432222 TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGA-AAGCTTTGGT
* *
25432259 CACATGTGTAGTACTATGTGAAGGCTACTACGCGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
25432324 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGGT
* *** * *
25432361 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* * * * * * *
25432425 TATGTAAAGGCTACTACGTGAACTGTAAAAC-TTGAT
66 TAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGGT
* * *
25432461 CATGTGTGTAGTACTATGTGAAGGCTACTACCTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
25432501 ATGATAAAAG
Statistics
Matches: 214, Mismatches: 26, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
100 39 0.18
101 44 0.21
102 130 0.61
103 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAGCTTTGGT
Found at i:25432427 original size:50 final size:50
Alignment explanation
Indices: 25432157--25432491 Score: 350
Period size: 51 Copynumber: 6.6 Consensus size: 50
25432147 AATCGATGAA
* * * * ***
25432157 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGTATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGT
* * * * * *
25432208 CACATGTGTAGTACTAAGTGAAGGCTACAATGTGTACCG-AGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGGT
* * * ***
25432259 CACATGTGTAGTACTATGTGAAGGCTACTACGCGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGT
* * * *
25432310 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA-C-TTGGT
*
25432361 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
* * *
25432411 CACGTGTGTAGTACTATGTAAAGGCTACTACGTGAACTGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
*
25432461 CATGTGTGTAGTACTATGTGAAGGCTACTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTAC
25432492 CTGTATCGAA
Statistics
Matches: 241, Mismatches: 36, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
49 4 0.02
50 83 0.34
51 147 0.61
52 6 0.02
53 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
Found at i:25433508 original size:85 final size:85
Alignment explanation
Indices: 25433365--25433539 Score: 332
Period size: 85 Copynumber: 2.1 Consensus size: 85
25433355 AGCTTACTCT
*
25433365 TCTTTATTTTTCTCTTATTTTATAGTGATATTAATCAGCTCGGGAATTGGACGGGGTCAGAACAT
1 TCTTTATTTTTCTCTTATTTTATAGTGATATTAATCAGCTAGGGAATTGGACGGGGTCAGAACAT
25433430 CATCCACACTATCATCATCA
66 CATCCACACTATCATCATCA
*
25433450 TCTTTATTTTTCTCTTATTTTATAGTGATATTAATTAGCTAGGGAATTGGACGGGGTCAGAACAT
1 TCTTTATTTTTCTCTTATTTTATAGTGATATTAATCAGCTAGGGAATTGGACGGGGTCAGAACAT
25433515 CATCCACACTATCATCATCA
66 CATCCACACTATCATCATCA
25433535 TCTTT
1 TCTTT
25433540 TGGGTATTTT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 88 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (85 bp):
TCTTTATTTTTCTCTTATTTTATAGTGATATTAATCAGCTAGGGAATTGGACGGGGTCAGAACAT
CATCCACACTATCATCATCA
Found at i:25434169 original size:43 final size:43
Alignment explanation
Indices: 25434108--25434221 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
25434098 TGAGTTCTCC
* * * *
25434108 TGTAAGACTACGTCTGGGACGTTGGCATCGA-CTTGTGTTTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATC-TGTGATTACA
25434151 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATCTGTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATCTGTGATTACA
*
25434194 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
25434222 TGTACAAGCT
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.03
43 56 0.92
44 3 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATCTGTGATTACA
Found at i:25434959 original size:2 final size:2
Alignment explanation
Indices: 25434952--25434985 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
25434942 CTTATAAAGA
*
25434952 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25434986 GCTTGATGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:25436378 original size:66 final size:66
Alignment explanation
Indices: 25436268--25436393 Score: 225
Period size: 66 Copynumber: 1.9 Consensus size: 66
25436258 CATTTCAGAG
* *
25436268 AGCACACTCCCGTGAACCTCATCCTTACAGCGGGATTACTAGTCCAAGCTAAATCCCCTGCAAGA
1 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAAGCTAAATCCCCTGCAAGA
25436333 T
66 T
*
25436334 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTG
1 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAAGCTAAATCCCCTG
25436394 TAATATAAAC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.27, C:0.36, G:0.17, T:0.20
Consensus pattern (66 bp):
AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAAGCTAAATCCCCTGCAAGA
T
Found at i:25436607 original size:57 final size:59
Alignment explanation
Indices: 25436539--25436654 Score: 184
Period size: 57 Copynumber: 2.0 Consensus size: 59
25436529 GCTAAATCCA
25436539 TTTTCCACATATTCTTCGGGAGGGCTATATC-A-A-GATCACCCGTCCGGGCTAGATTT
1 TTTTCCACATATTCTTCGGGAGGGCTATATCGATAGGATCACCCGTCCGGGCTAGATTT
25436595 TTTTCACACATATTCTTCGGGAGGGCTATATCAGGATAGGATCACCCGTCCGGGCTAGAT
1 TTTTC-CACATATTCTTCGGGAGGGCTATATC--GATAGGATCACCCGTCCGGGCTAGAT
25436655 CCTTTTTACC
Statistics
Matches: 54, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
56 5 0.09
57 26 0.48
60 1 0.02
61 1 0.02
62 21 0.39
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.30
Consensus pattern (59 bp):
TTTTCCACATATTCTTCGGGAGGGCTATATCGATAGGATCACCCGTCCGGGCTAGATTT
Found at i:25441473 original size:23 final size:23
Alignment explanation
Indices: 25441447--25441490 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
25441437 CTAGTTATGC
25441447 AAATACAAAAAGTTTTATAACTT
1 AAATACAAAAAGTTTTATAACTT
*
25441470 AAATACAAAAGGTTTTATAAC
1 AAATACAAAAAGTTTTATAAC
25441491 CCTAAACCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.32
Consensus pattern (23 bp):
AAATACAAAAAGTTTTATAACTT
Found at i:25441502 original size:24 final size:23
Alignment explanation
Indices: 25441451--25441502 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
25441441 TTATGCAAAT
* *
25441451 ACAAAAAGTTTTATAACTTAAAT
1 ACAAAAAGTTTTATAACCTAAAC
*
25441474 ACAAAAGGTTTTATAACCCTAAAC
1 ACAAAAAGTTTTATAA-CCTAAAC
*
25441498 CCAAA
1 ACAAA
25441503 TACAAAAAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.27
Consensus pattern (23 bp):
ACAAAAAGTTTTATAACCTAAAC
Found at i:25443791 original size:39 final size:39
Alignment explanation
Indices: 25443748--25443827 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
25443738 AAAGGATAAT
25443748 AAACTAAAGGCTAAATAAAAATAAAACAAAAACTATTCA
1 AAACTAAAGGCTAAATAAAAATAAAACAAAAACTATTCA
25443787 AAACTAAAGGCTAAATAAAAATAAAACAAAAACTATTCA
1 AAACTAAAGGCTAAATAAAAATAAAACAAAAACTATTCA
25443826 AA
1 AA
25443828 CTTCTAATGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.65, C:0.12, G:0.05, T:0.17
Consensus pattern (39 bp):
AAACTAAAGGCTAAATAAAAATAAAACAAAAACTATTCA
Found at i:25445257 original size:16 final size:17
Alignment explanation
Indices: 25445217--25445261 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
25445207 GGGGAATGTG
25445217 TAAAAAT-AAATATAAA
1 TAAAAATGAAATATAAA
* *
25445233 TAGACATGAAA-ATAAA
1 TAAAAATGAAATATAAA
25445249 TAAAAATGAAATA
1 TAAAAATGAAATA
25445262 CGAATAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (17 bp):
TAAAAATGAAATATAAA
Found at i:25446094 original size:153 final size:147
Alignment explanation
Indices: 25445902--25446291 Score: 469
Period size: 154 Copynumber: 2.6 Consensus size: 147
25445892 CAAAGTAGAT
* *
25445902 AAAAAAAATCAAAACTTTGTATTAAAATTTTAAAATTTCCTTTAAAATGAATTAAACAAATATAT
1 AAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGAATTAAA-AAATATAT
25445967 TTTTATTTTTCAAAATCTAAACTTTCTC-CCTTTTTAAAAAAAAACACTATTTTTCTTAAAGATT
65 TTTTATTTTTCAAAATCTAAACTTTCTCTCCTTTTTAAAAAAAAA-A--A---TTCTTAAAGATT
* *
25446031 AAAATTTTTATTTTGAAATAGTTG
124 AAAACTTTTACTTTGAAATAGTTG
**
25446055 AAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGATAAAAAAAAACAATA
1 AAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATG---AATTAAAA-AATA
* ** **
25446120 GATTTTTATTTTTCAAAATCTAAACTTTCTCTTTTTTTTTTTTTAAAAAAAAATTCTTAAAGATT
62 TATTTTTATTTTTCAAAATCTAAACTTTCTC---TCCTTTTTAAAAAAAAAAATTCTTAAAGATT
*
25446185 AAAGCTTTTACTTTGAAATAGTTG
124 AAAACTTTTACTTTGAAATAGTTG
* * *
25446209 AAAAAAAATCAAAACTTTATTTTAAAATTTTAATCTTTCCTTTAAAAT-AACTATAAAAAACATA
1 AAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGAA-T-TAAAAAATATA
*
25446273 TTTTTATTTGTTAAAAATC
64 TTTTTATTT-TTCAAAATC
25446292 AAGCCTTTTT
Statistics
Matches: 207, Mismatches: 19, Indels: 23
0.83 0.08 0.09
Matches are distributed among these distances:
150 2 0.01
151 13 0.06
152 12 0.06
153 47 0.23
154 79 0.38
155 1 0.00
156 39 0.19
157 1 0.00
159 1 0.00
160 12 0.06
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.42
Consensus pattern (147 bp):
AAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGAATTAAAAAATATATT
TTTATTTTTCAAAATCTAAACTTTCTCTCCTTTTTAAAAAAAAAAATTCTTAAAGATTAAAACTT
TTACTTTGAAATAGTTG
Found at i:25446706 original size:9 final size:10
Alignment explanation
Indices: 25446688--25446721 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
25446678 AAAAGGAAAG
25446688 AAGAAAAAAA
1 AAGAAAAAAA
25446698 AAGAAAAAAA
1 AAGAAAAAAA
*
25446708 TAAGAAAAATA
1 -AAGAAAAAAA
25446719 AAG
1 AAG
25446722 GTTTCAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (10 bp):
AAGAAAAAAA
Found at i:25447031 original size:16 final size:16
Alignment explanation
Indices: 25447010--25447040 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
25447000 TAGGCCTCTA
25447010 AATGCAATGAAAAGTC
1 AATGCAATGAAAAGTC
25447026 AATGCAATGAAAAGT
1 AATGCAATGAAAAGT
25447041 AAACTAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.10, G:0.19, T:0.19
Consensus pattern (16 bp):
AATGCAATGAAAAGTC
Found at i:25447109 original size:42 final size:42
Alignment explanation
Indices: 25447047--25447427 Score: 424
Period size: 42 Copynumber: 9.1 Consensus size: 42
25447037 AAGTAAACTA
* * *
25447047 GAAAAGTAAACGGACCTCCACACCTGGGTCTCTAAATGTAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* ** *
25447089 GAAAAGTCAAAT-GACATCCACACCTGGATCTCTAAATGAAAT
1 GAAAAGT-AAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* * * *
25447131 GAAAAGTGAGTGGACCTCAATACCTGGGCCTCTAAATGCAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* * * * * *
25447173 AAAAAGTAAATGGACCTCTACACCTAGGTCTCTAAATGTAAA
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* * * *
25447215 GAAAAGTAAATAGACCTCCATATCTGGGCTTCTAAATGCAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* * * *
25447257 GAAAAGTAAACGAACCTCTACACCTAGGCCTCTAAATGCAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
*** *
25447299 GAAAAG-AGAACAAACCTCCACACCTAGGCCTCTAAATGCAAT
1 GAAAAGTA-AATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* * * *
25447341 GAAAAGTAAATGGACTTCCACCCCTAGGCCTCTAAATGTAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
*
25447383 GAAAAGTAAATGGACCTCCACACCTGGGCCACTAAATGCAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
25447425 GAA
1 GAA
25447428 TGTTTTCCTT
Statistics
Matches: 283, Mismatches: 52, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
41 3 0.01
42 276 0.98
43 4 0.01
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.21
Consensus pattern (42 bp):
GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
Found at i:25447857 original size:17 final size:17
Alignment explanation
Indices: 25447835--25447867 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
25447825 CTTTATTTTT
*
25447835 TTTCTTTTTTTTTTTGG
1 TTTCTTTTTTGTTTTGG
25447852 TTTCTTTTTTGTTTTG
1 TTTCTTTTTTGTTTTG
25447868 TTGTTTTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.06, G:0.12, T:0.82
Consensus pattern (17 bp):
TTTCTTTTTTGTTTTGG
Found at i:25447874 original size:14 final size:15
Alignment explanation
Indices: 25447857--25447889 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
25447847 TTTGGTTTCT
25447857 TTTTTGTT-TTGTTG
1 TTTTTGTTGTTGTTG
25447871 -TTTTGTTGTTGTTG
1 TTTTTGTTGTTGTTG
25447885 TTTTT
1 TTTTT
25447890 TATTTAGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.41
14 6 0.35
15 4 0.24
ACGTcount: A:0.00, C:0.00, G:0.21, T:0.79
Consensus pattern (15 bp):
TTTTTGTTGTTGTTG
Found at i:25455992 original size:4 final size:4
Alignment explanation
Indices: 25455958--25456015 Score: 53
Period size: 4 Copynumber: 14.5 Consensus size: 4
25455948 TGAATAAACA
* * * * * **
25455958 AATG AACG AATG AGTG AACG AATG GATG AATG AATG AATG AATT AAAA
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG
25456006 AATG AATG AA
1 AATG AATG AA
25456016 ATTGGGGCAC
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.52, C:0.03, G:0.24, T:0.21
Consensus pattern (4 bp):
AATG
Found at i:25457275 original size:9 final size:9
Alignment explanation
Indices: 25457261--25457291 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
25457251 GTTAAACGAA
25457261 TCGAGTTAT
1 TCGAGTTAT
*
25457270 TCGAGTTAA
1 TCGAGTTAT
25457279 TCGAGTTAT
1 TCGAGTTAT
25457288 TCGA
1 TCGA
25457292 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:25457361 original size:9 final size:9
Alignment explanation
Indices: 25457344--25457380 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
25457334 TGAGTTTTCG
25457344 AATTCGAAT
1 AATTCGAAT
*
25457353 AACTCGAAT
1 AATTCGAAT
25457362 AATTCGAAT
1 AATTCGAAT
25457371 AATTCGAAT
1 AATTCGAAT
25457380 A
1 A
25457381 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:25457628 original size:30 final size:31
Alignment explanation
Indices: 25457594--25457653 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
25457584 AAACCTTTTA
*
25457594 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
25457624 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
25457654 TCTCACCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:25471863 original size:53 final size:53
Alignment explanation
Indices: 25471806--25471964 Score: 201
Period size: 54 Copynumber: 3.0 Consensus size: 53
25471796 GGCCATAACA
* * ** *
25471806 ATCATTTCATCTTCTAGGGGTATAACAGTCATTTTACCCTATGGGGTATTTCG
1 ATCATTTTATCTTATAGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCG
* *
25471859 ATCATTTTATCCTATAAGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCG
1 ATCATTTTATCTTATAGGGGTATTTCGGTCATTTTACCCTATG-GGGTATTTCG
* * * *
25471913 GTTATTTTACCTTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTT
1 ATCATTTTATCTTATAGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTT
25471965 TAGTCATTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 36 0.40
54 54 0.59
55 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.43
Consensus pattern (53 bp):
ATCATTTTATCTTATAGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCG
Found at i:25471890 original size:27 final size:27
Alignment explanation
Indices: 25471833--25471987 Score: 204
Period size: 27 Copynumber: 5.8 Consensus size: 27
25471823 GGGTATAACA
25471833 GTCATTTTACCCTAT-GGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * **
25471859 ATCATTTTATCCTATAAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
25471886 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
25471913 GTTATTTTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
**
25471940 GTCATTTTACCCTATGGGGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
25471967 GTCATTTTGCCTTATGGGGGT
1 GTCATTTTACCCTATGGGGGT
25471988 CTCAATGCAG
Statistics
Matches: 113, Mismatches: 15, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
26 13 0.12
27 100 0.88
ACGTcount: A:0.17, C:0.15, G:0.23, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:25485684 original size:50 final size:51
Alignment explanation
Indices: 25485507--25485689 Score: 167
Period size: 51 Copynumber: 3.6 Consensus size: 51
25485497 TGCCTATAAA
* * * ** *
25485507 CACGTGTGTAGTACTAAGTGCAGGCTACTACGA-GTATCG-ATAGATAATGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTAC-ATGAACCGAAAAG-TTTTGAT
* * ** * * * *
25485558 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAGGTTTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGAACCGAAAAGTTTTGAT
25485609 CACGTGTGTAGTACTATA-TGCAGGCTACTACATGAACCGAAAAG-TTTGAT
1 CACGTGTGTAGTACTA-AGTGCAGGCTACTACATGAACCGAAAAGTTTTGAT
* *
25485659 CATGTGTGTAGTACTAAGTGAAGGCTACTAC
1 CACGTGTGTAGTACTAAGTGCAGGCTACTAC
25485690 GTGTATCGAA
Statistics
Matches: 109, Mismatches: 19, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
49 1 0.01
50 32 0.29
51 74 0.68
52 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACATGAACCGAAAAGTTTTGAT
Found at i:25488000 original size:25 final size:27
Alignment explanation
Indices: 25487953--25488002 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
25487943 TGTTCTTAAA
25487953 GAGTCATTTCAATAGCTAATCATTATC
1 GAGTCATTTCAATAGCTAATCATTATC
* *
25487980 GAGT-ATTTCCAT-GCTATTCATTA
1 GAGTCATTTCAATAGCTAATCATTA
25488003 GCCATATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 7 0.33
27 4 0.19
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (27 bp):
GAGTCATTTCAATAGCTAATCATTATC
Found at i:25488289 original size:12 final size:12
Alignment explanation
Indices: 25488272--25488304 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
25488262 AATATCATGA
25488272 TCTTTACTTTCT
1 TCTTTACTTTCT
25488284 TCTTTACTTTCT
1 TCTTTACTTTCT
25488296 TCTTTACTT
1 TCTTTACTT
25488305 ACTCTCTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.09, C:0.24, G:0.00, T:0.67
Consensus pattern (12 bp):
TCTTTACTTTCT
Found at i:25488323 original size:20 final size:20
Alignment explanation
Indices: 25488298--25488336 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
25488288 TACTTTCTTC
25488298 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
25488318 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
25488337 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:25489177 original size:28 final size:28
Alignment explanation
Indices: 25489138--25489400 Score: 367
Period size: 28 Copynumber: 9.4 Consensus size: 28
25489128 CTATTCAGTG
25489138 ACAGT-ACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
25489165 ACAGTAACAGTGTGGGCCTTAGCCAAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
25489193 ACAGTAACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
25489221 ACAGTAACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
25489249 ACAG-AATCAGTGTGGGCCTTAGCCCATT
1 ACAGTAA-CAGTGTGGGCCTTAGCCCAAT
* *
25489277 ACAG-AATCAGTGTGGGACTTAGCCCATT
1 ACAGTAA-CAGTGTGGGCCTTAGCCCAAT
* *
25489305 ACAG-AATCAGTGTGGGACTTAGCCCATT
1 ACAGTAA-CAGTGTGGGCCTTAGCCCAAT
*
25489333 ATAGTAACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
25489361 -CTAG-AATCAGTGTAGGCCTTAGCCCAAT
1 AC-AGTAA-CAGTGTGGGCCTTAGCCCAAT
25489389 ACAGTAACAGTG
1 ACAGTAACAGTG
25489401 CAGTGCAATA
Statistics
Matches: 220, Mismatches: 9, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
27 9 0.04
28 206 0.94
29 5 0.02
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (28 bp):
ACAGTAACAGTGTGGGCCTTAGCCCAAT
Found at i:25489836 original size:27 final size:27
Alignment explanation
Indices: 25489804--25490147 Score: 256
Period size: 27 Copynumber: 12.7 Consensus size: 27
25489794 TTTTATCTCC
**
25489804 TAGGGGTATAACAGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
* *
25489831 TTGGGGTATTTCAGTTATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
* *
25489858 TAGGGGTATTTCAATTATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
* **
25489885 TGGGGGTATTTTGGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
25489912 T-GAGGGTATTTC-GATCATTTTACCCTA
1 TAG-GGGTATTTCAG-TCATTTTACCCTA
* *
25489939 TAGGGGTATTTC-GATCATTTTATCCTG
1 TAGGGGTATTTCAG-TCATTTTACCCTA
* * *
25489966 TGGGGGTAATTT-GGTCATTTTACCCTG
1 TAGGGGT-ATTTCAGTCATTTTACCCTA
* * *
25489993 T-GAGGGTAATTT-GGTCACTTTACCGTA
1 TAG-GGGT-ATTTCAGTCATTTTACCCTA
* * *
25490020 TGGGGGTAATTCTGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
* * * *
25490047 TGGGGGTAATTT-GGTTATTTTACCCTG
1 TAGGGGT-ATTTCAGTCATTTTACCCTA
* * * *
25490074 TGGGGGTAATTCGGTCATTTTACCCTG
1 TAGGGGTATTTCAGTCATTTTACCCTA
** *
25490101 CGGGGGTAATTC-GATCATTTTACCCTA
1 TAGGGGTATTTCAG-TCATTTTACCCTA
*
25490128 TGGGGGTATTTC-GATCATTT
1 TAGGGGTATTTCAG-TCATTT
25490148 ATCGACCTCT
Statistics
Matches: 273, Mismatches: 33, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.04
27 253 0.93
28 10 0.04
ACGTcount: A:0.19, C:0.16, G:0.24, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTCAGTCATTTTACCCTA
Found at i:25489932 original size:81 final size:81
Alignment explanation
Indices: 25489817--25490135 Score: 385
Period size: 81 Copynumber: 3.9 Consensus size: 81
25489807 GGGTATAACA
* * * *
25489817 GTCATTTTACCCTATTG-GGGTATTTC-AGTTATTTTACCCTATAGGGGTATTTCAATTATTTTA
1 GTCATTTTACCCTA-TGAGGGTATTTCGA-TCATTTTACCCTATAGGGGTAATTCGATCATTTTA
*
25489880 CCCTATGGGGGTATTTTG
64 CCCTATGGGGGTAATTTG
* *
25489898 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATAGGGGTATTTCGATCATTTTATC
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATAGGGGTAATTCGATCATTTTACC
*
25489963 CTGTGGGGGTAATTTG
66 CTATGGGGGTAATTTG
* * * * *
25489979 GTCATTTTACCCTGTGAGGGTAATTT-GGTCACTTTACCGTATGGGGGTAATTCTG-TCATTTTA
1 GTCATTTTACCCTATGAGGGT-ATTTCGATCATTTTACCCTATAGGGGTAATTC-GATCATTTTA
25490042 CCCTATGGGGGTAATTTG
64 CCCTATGGGGGTAATTTG
* * * * * ***
25490060 GTTATTTTACCCTGTGGGGGTAATTCGGTCATTTTACCCTGCGGGGGTAATTCGATCATTTTACC
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATAGGGGTAATTCGATCATTTTACC
25490125 CTATGGGGGTA
66 CTATGGGGGTA
25490136 TTTCGATCAT
Statistics
Matches: 211, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
80 6 0.03
81 199 0.94
82 6 0.03
ACGTcount: A:0.19, C:0.16, G:0.24, T:0.41
Consensus pattern (81 bp):
GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATAGGGGTAATTCGATCATTTTACC
CTATGGGGGTAATTTG
Found at i:25490146 original size:54 final size:54
Alignment explanation
Indices: 25489818--25490147 Score: 362
Period size: 54 Copynumber: 6.1 Consensus size: 54
25489808 GGTATAACAG
* * * * *
25489818 TCATTTTACCCTATTGGGGT-ATTTCAGTTATTTTACCCTATAGGGGTATTTCAA
1 TCATTTTACCCTATGGGGGTAATTT-GGTCATTTTACCCTATGGGGGTATTTCGA
* * *
25489872 TTATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTAATTTGGTCATTTTACCCTATGGGGGTATTTCGA
* * * * *
25489926 TCATTTTACCCTATAGGGGT-ATTTCGATCATTTTATCCTGTGGGGGTAATTT-GG
1 TCATTTTACCCTATGGGGGTAATTT-GGTCATTTTACCCTATGGGGGT-ATTTCGA
* * * * *
25489980 TCATTTTACCCTGTGAGGGTAATTTGGTCACTTTACCGTATGGGGGTAATTCTG-
1 TCATTTTACCCTATGGGGGTAATTTGGTCATTTTACCCTATGGGGGTATTTC-GA
* * * *
25490034 TCATTTTACCCTATGGGGGTAATTTGGTTATTTTACCCTGTGGGGGTAATTCGG
1 TCATTTTACCCTATGGGGGTAATTTGGTCATTTTACCCTATGGGGGTATTTCGA
** * *
25490088 TCATTTTACCCTGCGGGGGTAATTCGATCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTAATTTGGTCATTTTACCCTATGGGGGTATTTCGA
25490142 TCATTT
1 TCATTT
25490148 ATCGACCTCT
Statistics
Matches: 230, Mismatches: 39, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
53 7 0.03
54 211 0.92
55 12 0.05
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (54 bp):
TCATTTTACCCTATGGGGGTAATTTGGTCATTTTACCCTATGGGGGTATTTCGA
Found at i:25490373 original size:17 final size:18
Alignment explanation
Indices: 25490351--25490386 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
25490341 TTCATCCGTG
*
25490351 TGGGCCTACA-AGCCCAT
1 TGGGCCCACACAGCCCAT
25490368 TGGGCCCACACAGCCCAT
1 TGGGCCCACACAGCCCAT
25490386 T
1 T
25490387 TCGACCTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.22, C:0.39, G:0.22, T:0.17
Consensus pattern (18 bp):
TGGGCCCACACAGCCCAT
Found at i:25491722 original size:50 final size:50
Alignment explanation
Indices: 25491656--25491846 Score: 193
Period size: 50 Copynumber: 3.7 Consensus size: 50
25491646 TCCTGTACTA
* * **
25491656 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGATG
* * * *
25491706 CCCATGCCATGTCCCAGACATAGTCTTACAGGGGACCTCTCATCTCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGATG
* * * * *
25491756 CCAACGGCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATAACCTCAATAATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GATG
* *
25491812 CCAATTCCATGTCCCAAACATGGTCTTACATGGGA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGA
25491847 TCTCATCCCC
Statistics
Matches: 112, Mismatches: 23, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
50 78 0.70
53 2 0.02
56 32 0.29
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGATG
Found at i:25496291 original size:28 final size:27
Alignment explanation
Indices: 25496177--25496316 Score: 163
Period size: 27 Copynumber: 5.1 Consensus size: 27
25496167 TATTTTGGTT
* *
25496177 ATTTTACCCTTCGGGGGTATTTCGATA
1 ATTTTACCCTTCGGGGGTAATTCGATC
** * *
25496204 ATTTTACCCTTCAAGGGTATTTCAATC
1 ATTTTACCCTTCGGGGGTAATTCGATC
25496231 ATTTTACCCTTCGGGGGTAATTCGATC
1 ATTTTACCCTTCGGGGGTAATTCGATC
* *
25496258 ATTTTACCCTCCGGGGGTAATTCGGTC
1 ATTTTACCCTTCGGGGGTAATTCGATC
* * * *
25496285 ATTTTTACCTTTCAGGGGTAACTCGGTC
1 A-TTTTACCCTTCGGGGGTAATTCGATC
25496313 ATTT
1 ATTT
25496317 AACAACCTTT
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 75 0.77
28 23 0.23
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.39
Consensus pattern (27 bp):
ATTTTACCCTTCGGGGGTAATTCGATC
Found at i:25497863 original size:25 final size:25
Alignment explanation
Indices: 25497826--25497879 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
25497816 TGAACCTCTG
*
25497826 ACCTCCTTACCACACCTGTGACGCC
1 ACCTCCTTACCACACCTGTGACACC
* *
25497851 ACCTCCTTGCCACACCTGTGTCACC
1 ACCTCCTTACCACACCTGTGACACC
25497876 ACCT
1 ACCT
25497880 TGCCACTACA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.19, C:0.48, G:0.11, T:0.22
Consensus pattern (25 bp):
ACCTCCTTACCACACCTGTGACACC
Found at i:25503106 original size:42 final size:43
Alignment explanation
Indices: 25503059--25503170 Score: 129
Period size: 42 Copynumber: 2.6 Consensus size: 43
25503049 TTCTGAGGTG
* *
25503059 TGATTTCATGTAAGACCATGTCTGGGGC-GTTGGCATCG-TATA
1 TGATTTCATGTAAGACCATGTCTGGGACAG-TGACATCGATATA
* * *
25503101 TGATTTCGTGTAAGACCCTGTTTGGGACAGTGACATCGATATA
1 TGATTTCATGTAAGACCATGTCTGGGACAGTGACATCGATATA
* * *
25503144 TTATATCATGTAAGACCATATCTGGGA
1 TGATTTCATGTAAGACCATGTCTGGGA
25503171 TATGGCATTA
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
42 31 0.54
43 26 0.46
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCTGGGACAGTGACATCGATATA
Found at i:25505229 original size:16 final size:16
Alignment explanation
Indices: 25505208--25505239 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
25505198 GGGGTGTTAC
25505208 AGGTCCGTATAAACAG
1 AGGTCCGTATAAACAG
25505224 AGGTCCGTATAAACAG
1 AGGTCCGTATAAACAG
25505240 TCACTTTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.19
Consensus pattern (16 bp):
AGGTCCGTATAAACAG
Found at i:25527750 original size:39 final size:39
Alignment explanation
Indices: 25527707--25527888 Score: 206
Period size: 39 Copynumber: 4.7 Consensus size: 39
25527697 AAGATGTTTT
*
25527707 TGAGTATTGTGATATATGCTTAAATGTTATGCGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * *
25527746 TGAGTA-GGTGATATATGCTTGAATTTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * *
25527784 CGAGTATTGTGACATATGCTTAAATGTTATGAGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * *
25527823 TGAGTATTGTGACATATGC-TAGTATGTTAGGTGATTATA
1 TGAGTATTGTGATATATGCTTA-AATGTTATGTGATTATA
* * * * *
25527862 TGTGTAATATGGTATATACTTAAATGT
1 TGAGTATTGTGATATATGCTTAAATGT
25527889 GAATATGTCT
Statistics
Matches: 119, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
38 35 0.29
39 82 0.69
40 2 0.02
ACGTcount: A:0.31, C:0.05, G:0.22, T:0.42
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:25527794 original size:77 final size:78
Alignment explanation
Indices: 25527708--25527888 Score: 229
Period size: 78 Copynumber: 2.3 Consensus size: 78
25527698 AGATGTTTTT
* * * *
25527708 GAGTATTGTGATATATGCTTAAATGTTATGCGATTATATGAGTA-GGTGATATATGCTTGAATTT
1 GAGTATTGTGATATATGCTTAAATGTTATGAGATTATATGAGTATGGTGACATATGCTAGAATGT
*
25527772 TATGTGATTATAC
66 TAGGTGATTATAC
* * *
25527785 GAGTATTGTGACATATGCTTAAATGTTATGAGATTATATGAGTATTGTGACATATGCTAGTATGT
1 GAGTATTGTGATATATGCTTAAATGTTATGAGATTATATGAGTATGGTGACATATGCTAGAATGT
*
25527850 TAGGTGATTATAT
66 TAGGTGATTATAC
* * * * *
25527863 GTGTAATATGGTATATACTTAAATGT
1 GAGTATTGTGATATATGCTTAAATGT
25527889 GAATATGTCT
Statistics
Matches: 88, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
77 42 0.48
78 46 0.52
ACGTcount: A:0.31, C:0.05, G:0.22, T:0.42
Consensus pattern (78 bp):
GAGTATTGTGATATATGCTTAAATGTTATGAGATTATATGAGTATGGTGACATATGCTAGAATGT
TAGGTGATTATAC
Found at i:25541291 original size:14 final size:15
Alignment explanation
Indices: 25541264--25541296 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
25541254 ATTCTTCATT
25541264 TTTTTGTGTATTTTA
1 TTTTTGTGTATTTTA
*
25541279 TTTTTGT-TTTTTTA
1 TTTTTGTGTATTTTA
25541293 TTTT
1 TTTT
25541297 GATTGATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.82
Consensus pattern (15 bp):
TTTTTGTGTATTTTA
Found at i:25545150 original size:19 final size:19
Alignment explanation
Indices: 25545126--25545172 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
25545116 TGACGCCTTT
*
25545126 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTACAT-CA
25545145 TTTGCATTACATTACATCA
1 TTTGCATTACATTACATCA
*
25545164 TATGCATTA
1 TTTGCATTA
25545173 AAGTCCACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTACATCA
Found at i:25548321 original size:18 final size:18
Alignment explanation
Indices: 25548292--25548339 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
25548282 AAAATGATGG
*
25548292 AAAGAGAAAAGAAAAAGA
1 AAAGAAAAAAGAAAAAGA
* * *
25548310 GAAGGAAAAAGAAAAGGA
1 AAAGAAAAAAGAAAAAGA
25548328 AAAGAAAAAAGA
1 AAAGAAAAAAGA
25548340 GAGGCCAAAG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAAGAAAAAGA
Found at i:25548336 original size:12 final size:13
Alignment explanation
Indices: 25548292--25548338 Score: 55
Period size: 12 Copynumber: 3.8 Consensus size: 13
25548282 AAAATGATGG
25548292 AAAGAGAAAA-GA
1 AAAGAGAAAAGGA
*
25548304 AAA-AGAGAAGGA
1 AAAGAGAAAAGGA
25548316 AAA-AGAAAAGGA
1 AAAGAGAAAAGGA
*
25548328 AAAGAAAAAAG
1 AAAGAGAAAAG
25548339 AGAGGCCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
11 5 0.17
12 19 0.63
13 6 0.20
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
AAAGAGAAAAGGA
Found at i:25550830 original size:45 final size:44
Alignment explanation
Indices: 25550684--25551604 Score: 445
Period size: 44 Copynumber: 20.5 Consensus size: 44
25550674 TGGCAAATCA
* * * * * *
25550684 TATCTCCTTGAAGTTGCAATGGAGTAGATTAAAGCCAATAA-TCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-AAACAAGTCT
* * **
25550728 TATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
* * *
25550772 TATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGAAAGTAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAA-CAAGTCT
* * * * ** *
25550817 TATCCCCCTGAAGTTACAGT-GAGGCAGACTGAAGATGGCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGA-GCAGATTAAAGA-AACAAGTCT
* * * * * *
25550862 TATCTCCTTGAAGTTACAGTGGAGCATATTAAAGCCAATAA-TAT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-AAACAAGTCT
* * ** **
25550906 TATCCCCCTAAAGTTGCAGTGGAGTGGATTAAAGTTACAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
* * * *
25550950 TATCTCCCTGAAGTTGAAGTGAAGCAGACTGAAGAAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAA-CAAGTCT
* * * *
25550995 TATC-CCCGTGAAGTTGTAGTGGGGCAGGTTGAAGATGGAA-AA-TCT
1 TATCTCCC-TGAAGTTGCAGTGGAGCAGATT-AA-A-GAAACAAGTCT
* * * * *
25551040 TATCTCCCTGAAGTTGCAGTAGAGCAAATTAAAGCCAATAA-TCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-AAACAAGTCT
* * **
25551084 TATCTCTCTGAAGTTACAGTGGAGCAGATTAAAGTTACAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
* * *
25551128 TATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAA-CAAGTCT
* * * *
25551173 TATCCCCCTAAAGTTGCAGTGGAACAGATTGAAGTTGTAAATTGC-AGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA--AG-AAA---CAAG-TCT
** * * * * * ** *
25551224 TATCTCTTTAAAGTTGCAGTAGAGAAGATCATA-TCAC-ACT-T
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
* * * * *
25551265 TATCTCCCTGAATTTGTAGTGGAGCAGGTTGAAGATACCAA-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGA-AACAAGTCT
* * * * ** *
25551309 TGTCTCCGTGAAGTTGCAGTGGAGCATATTGAAGCTACTAA-TCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAAC-AAGTCT
* * *
25551353 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACGAAA-AA-TCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAA-GAAACAAGTCT
* * * * ** *
25551397 TATAC-CTCTGAAGTTGCAGTAGGTCGGATCAAATTCACCAAATCCAAGTTT
1 TAT-CTCCCTGAAGTTGC---A-GT-GGAGCAGATTAAAGAAA--CAAGTCT
* *** * **
25551448 TATCTCCCTGAAGTTACAGTGGAGCAGACCGAAGATATCAAACCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGA-AACAAGTCT
* * * * * * *
25551493 TATCTCCCTCAATTTTCAGTGGAGCAGGTTGAAGATACAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
* * * **
25551537 TATCCCCCTGAAGTTGCAGTGGGGCAGATTGAAGCCACAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
*
25551581 TATATCCCT-AAGGTTGCAGTGGAG
1 TATCTCCCTGAA-GTTGCAGTGGAG
25551605 TAGACTGAAG
Statistics
Matches: 660, Mismatches: 173, Indels: 88
0.72 0.19 0.10
Matches are distributed among these distances:
41 23 0.03
42 2 0.00
43 19 0.03
44 333 0.50
45 189 0.29
46 20 0.03
47 8 0.01
48 8 0.01
49 10 0.02
50 6 0.01
51 42 0.06
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
Found at i:25550875 original size:178 final size:178
Alignment explanation
Indices: 25550673--25551193 Score: 756
Period size: 178 Copynumber: 2.9 Consensus size: 178
25550663 AGAATAGATC
* * * *
25550673 ATGGCAAATCATATCTCCTTGAAGTTGCAATGGAGTAGATTAAAGCCAATAATCCTATCTCCTTG
1 ATGGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTAAAGCCAATAATCCTATCTCCTTG
* *
25550738 AAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTG
66 AAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTG
* *
25550803 AAGAAAGTAAGTCTTATCCCCCTGAAGTTACAGTGAGGCAGACTGAAG
131 AAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGAGGCAGACTGAAG
* * ** * * *
25550851 ATGGCAAATCTTATCTCCTTGAAGTTACAGTGGAGCATATTAAAGCCAATAATATTATCCCCCTA
1 ATGGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTAAAGCCAATAATCCTATCTCCTTG
* * *
25550916 AAGTTGCAGTGGAGTGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGAAGTGAAGCAGACTG
66 AAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTG
* * * **
25550981 AAGAAAGCAAGTCTTATCCCCGTGAAGTTGTAGTGGGGCAGGTTGAAG
131 AAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGAGGCAGACTGAAG
* * *
25551029 ATGGAAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAAATTAAAGCCAATAATCCTATCT-CTCT
1 ATGGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTAAAGCCAATAATCCTATCTCCT-T
* * *
25551093 GAAGTTACAGTGGAGCAGATTAAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT
65 GAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
*
25551158 GAAGAAAGCAAGTCTTATCCCCCTAAAGTTGCAGTG
130 GAAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTG
25551194 GAACAGATTG
Statistics
Matches: 301, Mismatches: 41, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
177 1 0.00
178 300 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (178 bp):
ATGGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTAAAGCCAATAATCCTATCTCCTTG
AAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTG
AAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGAGGCAGACTGAAG
Found at i:25551330 original size:44 final size:44
Alignment explanation
Indices: 25551265--25551659 Score: 192
Period size: 44 Copynumber: 8.8 Consensus size: 44
25551255 TATCACACTT
* * * *
25551265 TATCTCCCTGAATTTGTAGTGGAGCAGGTTGAAGATACCAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAATCC
* * * * *
25551309 TGTCTCCGTGAAGTTGCAGTGGAGCATATTGAAGCTACTAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAATCC
* * * *
25551353 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACGA-A-AAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-GAA-GATACCAATCC
* * * * * **
25551397 TATAC-CTCTGAAGTTGCAGTAGGTCGGATCAAATTCACCAAAT-CCAAGTTT
1 TAT-CTCCCTGAAGTTGC---A-GT-GGAGCAGATTGA--AGATACCAA-TCC
* ** * *
25551448 TATCTCCCTGAAGTTACAGTGGAGCAGACCGAAGATATCAAACC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAATCC
* * * * * *
25551492 TTATCTCCCTCAATTTTCAGTGGAGCAGGTTGAAGATACAAATCT
1 -TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAATCC
* * ** *
25551537 TATCCCCCTGAAGTTGCAGTGGGGCAGATTGAAGCCA-CAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAA-TCC
* * * *
25551581 TATATCCCT-AAGGTTGCAGTGGAGTAGACTGAAGATAGCAAAT-C
1 TATCTCCCTGAA-GTTGCAGTGGAGCAGATTGAAGATA-CCAATCC
* * * * *
25551625 TCATTTCCCTAAAATTGCAGTGGAACAAATTGAAG
1 T-ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
25551660 CTATAAATTG
Statistics
Matches: 256, Mismatches: 73, Indels: 43
0.69 0.20 0.12
Matches are distributed among these distances:
43 4 0.02
44 141 0.55
45 66 0.26
46 12 0.05
47 3 0.01
48 4 0.02
49 8 0.03
50 4 0.02
51 14 0.05
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAATCC
Found at i:25552359 original size:11 final size:11
Alignment explanation
Indices: 25552335--25552374 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
25552325 CCCCCGATTC
*
25552335 TTTATTTTGAT
1 TTTATTTTGTT
*
25552346 TTTGTTTTGTT
1 TTTATTTTGTT
25552357 TTTATTTTGTT
1 TTTATTTTGTT
*
25552368 TTGATTT
1 TTTATTT
25552375 CACTTTTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.10, C:0.00, G:0.12, T:0.78
Consensus pattern (11 bp):
TTTATTTTGTT
Found at i:25552363 original size:16 final size:16
Alignment explanation
Indices: 25552339--25552370 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25552329 CGATTCTTTA
25552339 TTTTGATTTTGTTTTG
1 TTTTGATTTTGTTTTG
*
25552355 TTTTTATTTTGTTTTG
1 TTTTGATTTTGTTTTG
25552371 ATTTCACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.00, G:0.16, T:0.78
Consensus pattern (16 bp):
TTTTGATTTTGTTTTG
Found at i:25568966 original size:21 final size:21
Alignment explanation
Indices: 25568937--25568992 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
25568927 AGGATGATTG
*
25568937 CACATGCCCGTGTGGAAATCC
1 CACACGCCCGTGTGGAAATCC
*
25568958 CACACGCCCGTGTGGGAATCC
1 CACACGCCCGTGTGGAAATCC
* *
25568979 CACACACCCTTGTG
1 CACACGCCCGTGTG
25568993 TGATAGCTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.21, C:0.38, G:0.23, T:0.18
Consensus pattern (21 bp):
CACACGCCCGTGTGGAAATCC
Found at i:25572929 original size:27 final size:27
Alignment explanation
Indices: 25572883--25573056 Score: 213
Period size: 27 Copynumber: 6.4 Consensus size: 27
25572873 AAAATTACTA
* * *
25572883 AAATACCCCAATCGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
25572910 AAATACCCCCATATGTTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
25572937 AAATACTCCTATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
25572964 AAATATCCCTATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
25572991 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* ** * *
25573018 ATATATGCCCATAGGATAAAATGACCA
1 AAATACCCCCATAGGGTAAAATGACCG
25573045 AAATACCCCCAT
1 AAATACCCCCAT
25573057 GAGACGAAAT
Statistics
Matches: 124, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 124 1.00
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCG
Found at i:25572968 original size:81 final size:81
Alignment explanation
Indices: 25572867--25573053 Score: 236
Period size: 81 Copynumber: 2.3 Consensus size: 81
25572857 AAACCCCAAA
* * * * *
25572867 ATAGG-TAAAATTACTAAAATACCCCAATCGGGTAAAATGA-CTGAAATACCCCCATATGTTAAA
1 ATAGGATAAAATGACCAAAATACCCCAATAGGGTAAAATGATC-GAAATACCCCCATAGGGTAAA
*
25572930 ATGACCGAAATACT-CCT
65 ATGACCGAAATA-TGCCC
* * * *
25572947 ATAGGGTAAAATGACCGAAATATCCCTATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAA
1 ATAGGATAAAATGACCAAAATACCCCAATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAA
*
25573012 TGACCGATATATGCCC
66 TGACCGAAATATGCCC
25573028 ATAGGATAAAATGACCAAAATACCCC
1 ATAGGATAAAATGACCAAAATACCCC
25573054 CATGAGACGA
Statistics
Matches: 91, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
80 6 0.07
81 84 0.92
82 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (81 bp):
ATAGGATAAAATGACCAAAATACCCCAATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAA
TGACCGAAATATGCCC
Found at i:25577672 original size:16 final size:16
Alignment explanation
Indices: 25577651--25577682 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25577641 TGGGAGTATG
*
25577651 TTAGAGACTTTAGTAA
1 TTAGAGACTTCAGTAA
25577667 TTAGAGACTTCAGTAA
1 TTAGAGACTTCAGTAA
25577683 ATTGATGCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (16 bp):
TTAGAGACTTCAGTAA
Found at i:25579358 original size:45 final size:46
Alignment explanation
Indices: 25579244--25579337 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
25579234 ATAAATAATG
25579244 TTATGAAAGTATAAAAAGGTATGAGTTGATGATGTTTTGAATATGC
1 TTATGAAAGTATAAAAAGGTATGAGTTGATGATGTTTTGAATATGC
*
25579290 TTATGAAAGTATAAAAAGGTATGAGTTGATGATGTTTT-ATTATGC
1 TTATGAAAGTATAAAAAGGTATGAGTTGATGATGTTTTGAATATGC
25579335 TTA
1 TTA
25579338 GCCATATACT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 9 0.19
46 38 0.81
ACGTcount: A:0.36, C:0.02, G:0.22, T:0.39
Consensus pattern (46 bp):
TTATGAAAGTATAAAAAGGTATGAGTTGATGATGTTTTGAATATGC
Found at i:25590511 original size:32 final size:32
Alignment explanation
Indices: 25590443--25590552 Score: 132
Period size: 32 Copynumber: 3.5 Consensus size: 32
25590433 GAATGGCTGC
*
25590443 AAGCCATAAGTA-CAGTAATATGATTGGCACA
1 AAGCCATAAGTAGCAGTAATATGATCGGCACA
* *
25590474 AAGCCATAAGTAGCAGTGATATGATCGGTACA
1 AAGCCATAAGTAGCAGTAATATGATCGGCACA
* * * * *
25590506 CAGCCATCATTAACAGTAATATGATCAGCACA
1 AAGCCATAAGTAGCAGTAATATGATCGGCACA
*
25590538 AAGCCATCAGTAGCA
1 AAGCCATAAGTAGCA
25590553 TCACAGCAAA
Statistics
Matches: 65, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
31 12 0.18
32 53 0.82
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (32 bp):
AAGCCATAAGTAGCAGTAATATGATCGGCACA
Found at i:25590585 original size:26 final size:26
Alignment explanation
Indices: 25590556--25590605 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
25590546 AGTAGCATCA
25590556 CAGCAA-AGCTGCCAGCAACAGTATCG
1 CAGCAACA-CTGCCAGCAACAGTATCG
* *
25590582 CAGCAACACTGGCAGTAACAGTAT
1 CAGCAACACTGCCAGCAACAGTAT
25590606 ATGTGGCCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.36, C:0.28, G:0.22, T:0.14
Consensus pattern (26 bp):
CAGCAACACTGCCAGCAACAGTATCG
Found at i:25590628 original size:27 final size:26
Alignment explanation
Indices: 25590594--25590657 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 26
25590584 GCAACACTGG
25590594 CAGTAACAGTATATGTGGCCA-AGCCAC
1 CAGTAACAGTAT-TGT-GCCAGAGCCAC
25590621 CAGTAACAGTGATTGTGCCAGAGCCAC
1 CAGTAACAGT-ATTGTGCCAGAGCCAC
25590648 CAGT-ACAGTA
1 CAGTAACAGTA
25590658 CTTCCTCCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
25 1 0.03
26 9 0.26
27 23 0.66
28 2 0.06
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGTAACAGTATTGTGCCAGAGCCAC
Found at i:25590752 original size:24 final size:24
Alignment explanation
Indices: 25590721--25590778 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
25590711 CCATGCTCAG
*
25590721 AATCAGTCATACAAATTACAGACA
1 AATCAGTCATACAAATCACAGACA
* *
25590745 AATTAGTCATACCAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
25590769 AATCAGTCAT
1 AATCAGTCAT
25590779 TTGCATCACG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.47, C:0.22, G:0.09, T:0.22
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:25590786 original size:24 final size:24
Alignment explanation
Indices: 25590759--25590804 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
25590749 AGTCATACCA
*
25590759 ATCACAGACAAATCAGTCATTTGC
1 ATCACAGACAAATCAATCATTTGC
*
25590783 ATCACGGACAAATCAATCATTT
1 ATCACAGACAAATCAATCATTT
25590805 ACACTCGAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (24 bp):
ATCACAGACAAATCAATCATTTGC
Found at i:25590858 original size:27 final size:27
Alignment explanation
Indices: 25590824--25590967 Score: 141
Period size: 27 Copynumber: 5.4 Consensus size: 27
25590814 GGCCAAAATC
*
25590824 GTCA-TTTACCCTCTAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
25590850 GTCATTTTACCTTATAGGGGTATTTA-T
1 GTCATTTTACCCTATAGGGGCA-TTACG
* *
25590877 GTCATTTAACCCTATAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
25590904 ATCATTTTACCCTACAAGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
25590931 ATCATTCTACCTTATA-GGGCTATTACG
1 GTCATTTTACCCTATAGGGGC-ATTACG
25590958 GTCATTTTAC
1 GTCATTTTAC
25590968 AAATATTAGG
Statistics
Matches: 97, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
26 11 0.11
27 83 0.86
28 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGCATTACG
Found at i:25590902 original size:54 final size:52
Alignment explanation
Indices: 25590823--25590967 Score: 164
Period size: 54 Copynumber: 2.7 Consensus size: 52
25590813 GGGCCAAAAT
* * * * * *
25590823 CGTCATTTACCCTCTAGGGGCATTACGGTCATTTTACCTTATAGGGGTATTTA
1 CGTCATTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAAGGGCA-TTA
* *
25590876 TGTCATTTAACCCTATAGGGGTATTACGATCATTTTACCCTACAAGGGCATTA
1 CGTCATTT-ACCCTATAGGGGTATTACGGTCATTTTACCCTACAAGGGCATTA
* *
25590929 CGATCATTCTACCTTATAGGGCTATTACGGTCATTTTAC
1 CG-TCATT-TACCCTATAGGGGTATTACGGTCATTTTAC
25590968 AAATATTAGG
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
53 11 0.14
54 65 0.84
55 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (52 bp):
CGTCATTTACCCTATAGGGGTATTACGGTCATTTTACCCTACAAGGGCATTA
Found at i:25594738 original size:38 final size:38
Alignment explanation
Indices: 25594683--25594982 Score: 298
Period size: 38 Copynumber: 7.9 Consensus size: 38
25594673 ATTACACCAT
* *
25594683 CACAAAGCCTGGTAGGCACAAAGCCCGAATAACACTAG
1 CACAAAGCCTGCTAGGCACATAGCCCGAATAACACTAG
* * * *
25594721 TACAAAGCCTG-TGAGGCACATAGCCTGAATAAAACCAG
1 CACAAAGCCTGCT-AGGCACATAGCCCGAATAACACTAG
* * * ** *
25594759 CACAAAGCCTGTTAGGCACATGGCCTGAATATTA-TCGG
1 CACAAAGCCTGCTAGGCACATAGCCCGAATAACACT-AG
* * *
25594797 CACAAAGCCTGCTAGGCATATAGCCCGAATATCACTGG
1 CACAAAGCCTGCTAGGCACATAGCCCGAATAACACTAG
* * * *
25594835 CACAAAGCCTGCTAGGCATATAGCCCAAATATCACTGG
1 CACAAAGCCTGCTAGGCACATAGCCCGAATAACACTAG
* * * * ** *
25594873 CACAAAGCCTGCTTGGCATATAACCTGAATATGACCAG
1 CACAAAGCCTGCTAGGCACATAGCCCGAATAACACTAG
* *
25594911 CACAAAGCCTGCTAAGCACATAGCCCGAATAACACCAG
1 CACAAAGCCTGCTAGGCACATAGCCCGAATAACACTAG
* *
25594949 CACAAAGCCTACTAGGCACATAGCCCAAATAACA
1 CACAAAGCCTGCTAGGCACATAGCCCGAATAACA
25594983 TTATGTTTCT
Statistics
Matches: 224, Mismatches: 34, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
37 1 0.00
38 221 0.99
39 2 0.01
ACGTcount: A:0.36, C:0.28, G:0.19, T:0.16
Consensus pattern (38 bp):
CACAAAGCCTGCTAGGCACATAGCCCGAATAACACTAG
Found at i:25594883 original size:114 final size:114
Alignment explanation
Indices: 25594678--25594980 Score: 367
Period size: 114 Copynumber: 2.7 Consensus size: 114
25594668 TTTGCATTAC
* * * *
25594678 ACCATCACAAAGCCTGGTAGGCACAAAGCCCGAATAACACTAGTACAAAGCCTG-TGAGGCACAT
1 ACCAGCACAAAGCCTGCTAGGCACATAGCCCGAATAACACTAGCACAAAGCCTGCT-AGGCACAT
** ** *
25594742 AGCCTGAATAAAACCAGCACAAAGCCTG-TTAGGCACATGGCCTGAATATT
65 AGCCCAAATAAAACCAGCACAAAGCCTGCTT-GGCACATAACCTGAATATG
* * * * * *
25594792 ATCGGCACAAAGCCTGCTAGGCATATAGCCCGAATATCACTGGCACAAAGCCTGCTAGGCATATA
1 ACCAGCACAAAGCCTGCTAGGCACATAGCCCGAATAACACTAGCACAAAGCCTGCTAGGCACATA
** ** *
25594857 GCCCAAATATCACTGGCACAAAGCCTGCTTGGCATATAACCTGAATATG
66 GCCCAAATAAAACCAGCACAAAGCCTGCTTGGCACATAACCTGAATATG
* * *
25594906 ACCAGCACAAAGCCTGCTAAGCACATAGCCCGAATAACACCAGCACAAAGCCTACTAGGCACATA
1 ACCAGCACAAAGCCTGCTAGGCACATAGCCCGAATAACACTAGCACAAAGCCTGCTAGGCACATA
25594971 GCCCAAATAA
66 GCCCAAATAA
25594981 CATTATGTTT
Statistics
Matches: 157, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
114 154 0.98
115 3 0.02
ACGTcount: A:0.36, C:0.28, G:0.19, T:0.17
Consensus pattern (114 bp):
ACCAGCACAAAGCCTGCTAGGCACATAGCCCGAATAACACTAGCACAAAGCCTGCTAGGCACATA
GCCCAAATAAAACCAGCACAAAGCCTGCTTGGCACATAACCTGAATATG
Found at i:25618819 original size:10 final size:10
Alignment explanation
Indices: 25618804--25618872 Score: 61
Period size: 10 Copynumber: 6.9 Consensus size: 10
25618794 ACGAGCTCAA
25618804 TGAGCTGAAT
1 TGAGCTGAAT
25618814 TGAGCTTGAA-
1 TGAGC-TGAAT
*
25618824 TGAGCTGACT
1 TGAGCTGAAT
*
25618834 TGAGGTCGAA-
1 TGAGCT-GAAT
*
25618844 TGAGCTGACT
1 TGAGCTGAAT
* *
25618854 TGAGCTCAAG
1 TGAGCTGAAT
25618864 TGAGCTGAA
1 TGAGCTGAA
25618873 ATACATGAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
9 5 0.11
10 35 0.76
11 6 0.13
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (10 bp):
TGAGCTGAAT
Found at i:25618825 original size:20 final size:20
Alignment explanation
Indices: 25618802--25618872 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
25618792 TAACGAGCTC
25618802 AATGAGCTGAATTGAGCTTG
1 AATGAGCTGAATTGAGCTTG
* * *
25618822 AATGAGCTGACTTGAGGTCG
1 AATGAGCTGAATTGAGCTTG
* *
25618842 AATGAGCTGACTTGAGC-TC
1 AATGAGCTGAATTGAGCTTG
25618861 AAGTGAGCTGAA
1 AA-TGAGCTGAA
25618873 ATACATGAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 2 0.05
20 41 0.95
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.25
Consensus pattern (20 bp):
AATGAGCTGAATTGAGCTTG
Found at i:25619687 original size:17 final size:17
Alignment explanation
Indices: 25619665--25619698 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25619655 TTTCATTTGT
25619665 TTGCAGATCAATATCGC
1 TTGCAGATCAATATCGC
*
25619682 TTGCAGATCATTATCGC
1 TTGCAGATCAATATCGC
25619699 AATTTGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (17 bp):
TTGCAGATCAATATCGC
Found at i:25623313 original size:20 final size:20
Alignment explanation
Indices: 25623282--25623358 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 20
25623272 AGCTAATAAC
*
25623282 GAGCTC-AATGAGTTGAATT
1 GAGCTCGAATGAGCTGAATT
*
25623301 GAGCTCGAATGAGCTGACTT
1 GAGCTCGAATGAGCTGAATT
* *
25623321 GAGCTTGAATGAGCTGACTT
1 GAGCTCGAATGAGCTGAATT
*
25623341 GATCTC-AAGTGAGCTGAA
1 GAGCTCGAA-TGAGCTGAA
25623359 CCACATGAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.16
20 42 0.84
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (20 bp):
GAGCTCGAATGAGCTGAATT
Found at i:25623596 original size:10 final size:10
Alignment explanation
Indices: 25623581--25623615 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
25623571 TTGGGACTAA
25623581 ATGTGATTAT
1 ATGTGATTAT
25623591 ATGTGATTAT
1 ATGTGATTAT
*
25623601 TTGTGATTAT
1 ATGTGATTAT
*
25623611 TTGTG
1 ATGTG
25623616 GTTAATGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (10 bp):
ATGTGATTAT
Done.