Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 83 of 150
Found at i:25626049 original size:26 final size:26
Alignment explanation
Indices: 25626019--25626073 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
25626009 AACACACCAA
*
25626019 TATCGCAGCAAAG-TTGCCAGTAATAG
1 TATCGCAGCAAAGCTT-CCAGTAACAG
*
25626045 TATCGTAGCAAAGCTTCCAGTAACAG
1 TATCGCAGCAAAGCTTCCAGTAACAG
25626071 TAT
1 TAT
25626074 ATGTGGCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (26 bp):
TATCGCAGCAAAGCTTCCAGTAACAG
Found at i:25626091 original size:27 final size:26
Alignment explanation
Indices: 25626035--25626093 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
25626025 AGCAAAGTTG
* **
25626035 CCAGTAATAGTATCGTAGCAAAGCTT
1 CCAGTAACAGTATCGTAGCAAAGCCA
* *
25626061 CCAGTAACAGTATATGTGGCAAAGCCA
1 CCAGTAACAGTAT-CGTAGCAAAGCCA
25626088 CCAGTA
1 CCAGTA
25626094 GGTCCACAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (26 bp):
CCAGTAACAGTATCGTAGCAAAGCCA
Found at i:25626274 original size:25 final size:26
Alignment explanation
Indices: 25626228--25626284 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
25626218 GCTCAATCAT
* *
25626228 AGTCATACATATCATAGAGCAAT-TC
1 AGTCATACATAACATAGAGCAATAAC
25626253 AGTCATACATAACATA-AGGCAATAAC
1 AGTCATACATAACATAGA-GCAATAAC
25626279 AGTCAT
1 AGTCAT
25626285 TTTATCTCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 1 0.04
25 20 0.71
26 7 0.25
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (26 bp):
AGTCATACATAACATAGAGCAATAAC
Found at i:25626349 original size:27 final size:27
Alignment explanation
Indices: 25626306--25626552 Score: 243
Period size: 27 Copynumber: 9.2 Consensus size: 27
25626296 GGGGTATAAA
*
25626306 AGTCA-TTTACCTTATGGGGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
* *
25626332 AGCCATTTTACCCTATGGGGTTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
* * * *
25626359 GGTCATTTTAACCTAT-AGGGTATTTT
1 AGTCATTTTACCCTATGGGGGTATTTC
* * * *
25626385 AGTTAGTTTACCTTATGGGGGTATTTT
1 AGTCATTTTACCCTATGGGGGTATTTC
* * *
25626412 AGTCAATTTACCCTATGGGTGTATTTT
1 AGTCATTTTACCCTATGGGGGTATTTC
* * *
25626439 GGTCATTTTACCTTATGGGGCTATTT-
1 AGTCATTTTACCCTATGGGGGTATTTC
* *
25626465 TGATCATTTTACCCTATGAGGGTATTT-
1 AG-TCATTTTACCCTATGGGGGTATTTC
*
25626492 TGATCATTTTACCCTATGGGGGTATTTC
1 AG-TCATTTTACCCTATGGGGGTATTTC
25626520 -GATCATTTTACCCTATGGGGGTATTTC
1 AG-TCATTTTACCCTATGGGGGTATTTC
*
25626547 GGTCAT
1 AGTCAT
25626553 ATATCGACCT
Statistics
Matches: 187, Mismatches: 29, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
26 23 0.12
27 163 0.87
28 1 0.01
ACGTcount: A:0.19, C:0.15, G:0.21, T:0.44
Consensus pattern (27 bp):
AGTCATTTTACCCTATGGGGGTATTTC
Found at i:25631448 original size:12 final size:12
Alignment explanation
Indices: 25631431--25631461 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
25631421 AGTTTTCCAA
25631431 GCCGTGTGCTAG
1 GCCGTGTGCTAG
*
25631443 GCCGTGTGCTTG
1 GCCGTGTGCTAG
25631455 GCCGTGT
1 GCCGTGT
25631462 AACTCACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.03, C:0.26, G:0.42, T:0.29
Consensus pattern (12 bp):
GCCGTGTGCTAG
Found at i:25632195 original size:40 final size:40
Alignment explanation
Indices: 25632171--25632493 Score: 340
Period size: 40 Copynumber: 8.0 Consensus size: 40
25632161 AAGTGAATTT
* *
25632171 AGGGGTACCGAAGTACAAATAGGGGCACTTATGTGCAATT
1 AGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATC
** * * *
25632211 AGGGGGTACTAAAGTACAAAATACGGGCATGTATGTGCAATG
1 A-GGGGTACCGAAGTAC-AAATAGGGGCACGTATGTGCAATC
* * * *
25632253 AGGGATACCAAAGTATAAACAGGGGCACGTATGTGCAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATC
* * * * *
25632293 AGTGGTACTGAAGGACAAAAAAGGGCACGTATGTGCAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATC
* ** *
25632333 AGTGGTATTGAAGTACAAATAGGGGCACGTATGTGAAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATC
* * * * * *
25632373 AGGGGTAACTAAGTACAAACAGGGGTACGCATGTTCAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATC
* * * * *
25632413 AGGGGTGCCGAAGTACAAACAGAGGCATGTATGTGCAATT
1 AGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATC
*
25632453 AGGGTTACCGAAGTACAAATAGGGGCACGTATGTGCAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATC
25632493 A
1 A
25632494 CCAATAATCA
Statistics
Matches: 231, Mismatches: 50, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
40 185 0.80
41 25 0.11
42 21 0.09
ACGTcount: A:0.35, C:0.15, G:0.30, T:0.20
Consensus pattern (40 bp):
AGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATC
Found at i:25638307 original size:21 final size:21
Alignment explanation
Indices: 25638259--25638307 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 21
25638249 AAAACTCACT
*
25638259 TACCATATTTTTTCAATACAAA
1 TACCA-ATTTTTGCAATACAAA
25638281 TA-CAATTTTTGCACATAC-AA
1 TACCAATTTTTGCA-ATACAAA
25638301 TACCAAT
1 TACCAAT
25638308 ATTGCAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 12 0.50
21 10 0.42
22 2 0.08
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.37
Consensus pattern (21 bp):
TACCAATTTTTGCAATACAAA
Found at i:25647126 original size:27 final size:26
Alignment explanation
Indices: 25647096--25647164 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 26
25647086 AGGGGTATAA
**
25647096 CGGTCATTTTACCCTGTAGGCCTATTT
1 CGGTCATTTTACCCTCAAGG-CTATTT
* *
25647123 CGGTAATTTTACCCATCAAGGGTATTT
1 CGGTCATTTTACCC-TCAAGGCTATTT
*
25647150 CAGTCATTTTACCCT
1 CGGTCATTTTACCCT
25647165 TCGGGGGTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
26 1 0.03
27 30 0.86
28 4 0.11
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (26 bp):
CGGTCATTTTACCCTCAAGGCTATTT
Found at i:25647172 original size:27 final size:27
Alignment explanation
Indices: 25647118--25647244 Score: 125
Period size: 27 Copynumber: 4.7 Consensus size: 27
25647108 CCTGTAGGCC
* *
25647118 TATTTCGGTAATTTTACCCATCAAGGG
1 TATTTCAGTAATTTTACCCATCGAGGG
* * *
25647145 TATTTCAGTCATTTTACCCTTCGGGGG
1 TATTTCAGTAATTTTACCCATCGAGGG
25647172 TATTTTCA-TAATTTTACCCATCGAGGG
1 TA-TTTCAGTAATTTTACCCATCGAGGG
* * *
25647199 TATTTTAGAAATTTTACCTAAT-GAGGG
1 TATTTCAGTAATTTTACC-CATCGAGGG
*
25647226 TATCTT-GGTAATTTTACCC
1 TAT-TTCAGTAATTTTACCC
25647245 TACAGGGGTC
Statistics
Matches: 82, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
26 4 0.05
27 69 0.84
28 9 0.11
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (27 bp):
TATTTCAGTAATTTTACCCATCGAGGG
Found at i:25652074 original size:27 final size:27
Alignment explanation
Indices: 25651920--25652075 Score: 179
Period size: 27 Copynumber: 5.8 Consensus size: 27
25651910 CATTTTATAG
* * *
25651920 GGGTATTTTGGTAATTTTACCCA-CAA
1 GGGTATTTCGATAATTTTACCCATCGA
* * *
25651946 GGGTATTTCGATCATTTTACCCTTCGG
1 GGGTATTTCGATAATTTTACCCATCGA
* *
25651973 GGGTATTTTGATAATTTTACCCATTGA
1 GGGTATTTCGATAATTTTACCCATCGA
*
25652000 GGGTATTTCTATAATTTTACCCATCGA
1 GGGTATTTCGATAATTTTACCCATCGA
* *
25652027 GGGTATTTCGATAACTGTACCCATCGA
1 GGGTATTTCGATAATTTTACCCATCGA
* **
25652054 GGGTATCTCGGCAATTTTACCC
1 GGGTATTTCGATAATTTTACCC
25652076 TACAGGGGTC
Statistics
Matches: 107, Mismatches: 22, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
26 19 0.18
27 88 0.82
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACCCATCGA
Found at i:25663311 original size:20 final size:20
Alignment explanation
Indices: 25663286--25663326 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
25663276 AAGTAAAACC
25663286 AGCCTCAACTCTCGTAGCCT
1 AGCCTCAACTCTCGTAGCCT
25663306 AGCCTCAACTCTCGTAGCCT
1 AGCCTCAACTCTCGTAGCCT
25663326 A
1 A
25663327 TCTATGTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.39, G:0.15, T:0.24
Consensus pattern (20 bp):
AGCCTCAACTCTCGTAGCCT
Found at i:25670716 original size:15 final size:15
Alignment explanation
Indices: 25670696--25670724 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
25670686 ATGCTTCACA
25670696 CACCATGTTATCAAT
1 CACCATGTTATCAAT
25670711 CACCATGTTATCAA
1 CACCATGTTATCAA
25670725 ACAACAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.31
Consensus pattern (15 bp):
CACCATGTTATCAAT
Found at i:25671901 original size:24 final size:25
Alignment explanation
Indices: 25671874--25671923 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
25671864 CTGGTCATAA
*
25671874 AGAGAATTGAGGAG-GCATATTGGG
1 AGAGAATTGAGGAGAGAATATTGGG
*
25671898 AGAGATTTGAGGAGAGAATATTGGG
1 AGAGAATTGAGGAGAGAATATTGGG
25671923 A
1 A
25671924 TTTGGGGAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.36, C:0.02, G:0.40, T:0.22
Consensus pattern (25 bp):
AGAGAATTGAGGAGAGAATATTGGG
Found at i:25673017 original size:27 final size:28
Alignment explanation
Indices: 25672994--25673062 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
25672984 CTAATAGATG
25672994 AAAATGACTGAAATAACCC-CATAGGGT
1 AAAATGACTGAAATAACCCACATAGGGT
*
25673021 AAAATGATTGAAAT-ACCCACATAGGGT
1 AAAATGACTGAAATAACCCACATAGGGT
*
25673048 AAAATGACCGAAATA
1 AAAATGACTGAAATA
25673063 TCCTTGAAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.11
27 33 0.89
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (28 bp):
AAAATGACTGAAATAACCCACATAGGGT
Found at i:25687582 original size:28 final size:28
Alignment explanation
Indices: 25687524--25687578 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
25687514 ATAATAATTG
*
25687524 TAATAATGATAATATATATATAATATAA
1 TAATAATGATAATATATATAAAATATAA
*
25687552 TAATAGTGATAATA-ATAGTAAAA-ATAA
1 TAATAATGATAATATATA-TAAAATATAA
25687579 ATAAAAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 7 0.29
28 17 0.71
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (28 bp):
TAATAATGATAATATATATAAAATATAA
Found at i:25687614 original size:15 final size:14
Alignment explanation
Indices: 25687577--25687618 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 14
25687567 TAGTAAAAAT
*
25687577 AAATAAAAAAAC-G
1 AAATTAAAAAACAG
25687590 -AATTAAAAAACAG
1 AAATTAAAAAACAG
25687603 AAATTAACAAAACAG
1 AAATTAA-AAAACAG
25687618 A
1 A
25687619 GGAATAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 10 0.40
13 1 0.04
14 6 0.24
15 8 0.32
ACGTcount: A:0.71, C:0.10, G:0.07, T:0.12
Consensus pattern (14 bp):
AAATTAAAAAACAG
Found at i:25689240 original size:132 final size:131
Alignment explanation
Indices: 25689089--25697234 Score: 11253
Period size: 132 Copynumber: 61.6 Consensus size: 131
25689079 TCTTTGATCG
* * * * *
25689089 ATTCCACTGCCGACCAGGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACATCAAGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * *
25689154 GTAAAATCTGCCATCTTCGATCTACTCCACTACTGCCTT-GGGAGATAAGATCTGTAATCGTCAA
66 GTAAAATCTACCATCTT-GATCTGCTCCACTACTG-CTTAGGGAGATAAGATCTGTAATCTTCAA
25689218 TCT
129 TCT
* * * *
25689221 ATTCCACTACTGCCTAGGGAGATAGAACTACTGGCTTCAATGTACTCCACTGTAACCTCA-GGAA
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** * * *
25689285 GTAAAATCTGTCATCCTTGATCTGCTCCACTGCTACTTAGGGAGATAAGATCTGTAATCTTTAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25689350 CT
130 CT
*
25689352 ATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* ** * *
25689417 GAAAAATCCGCCATCCTTGATCTGCACCACTACTGCTTAGGGAGATAAGATCTGTAATCTTAAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25689482 CT
130 CT
*
25689484 ATTCCACTGCTACCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** * * *
25689549 GTAAAATCTGTCATCCTTGATCCGCTCCACTTCTGCTTAGGGAGATCAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25689614 CT
130 CT
*
25689616 ATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
*
25689681 GTAAAATCTACCATCCTTGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25689746 CT
130 CT
* * * * *
25689748 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCATCAATGTACTCTATTGCAACCTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
*
25689813 GTAAAATCTACCATCTTTGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25689878 CT
130 CT
* * *
25689880 ATTACACTGCTCCCCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * * * * *
25689945 CTAAAATCCACCATCTTTGATCTACTCCAATATTGCTTAGGGAGATAAGATCTGTAATCTTTAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25690010 CT
130 CT
* * * * *
25690012 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGACTTTAATATACTCCACTGTAACCTGAGAGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * * * * * * *
25690077 CTAAAATCCACCATCTTTGATCTACTCCAATATTGCTTAAGGAGATAAGATCTATAATCTTTAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25690142 CT
130 CT
* * * * *
25690144 ATTCCACTACTGCCCAGGGAGATAGAATTACTGACTTTAATATACTCTGA-TGTAACCTCAGGGA
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTC-CACTGTAACCTCAGGGA
* * * * *
25690208 GGTAAAATCTGCCATCATTGATCTGTTCCACTGCTACTTAGGGAGATAAGATCTGTAATCTTTAA
65 GGTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAA
25690273 TCT
129 TCT
* *
25690276 ATTCCACTGCTTCCTAGGGAGATAGAATTACTGGC-TCAAATGTACTCCACTGTAACCTCAGGGA
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTC-AATGTACTCCACTGTAACCTCAGGGA
* ** *
25690340 CGTAAAATCCGCCATCCTTGATCTGCTCCACTACTGCTTAGGGAAATAAGATCTGTAATCTTCAA
65 GGTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAA
25690405 TCT
129 TCT
* * *
25690408 ATTCCACTGCTACCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTTTAACCTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* *
25690473 GTAAAATCAACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25690538 CT
130 CT
* * * *
25690540 ATTACACTGCTGCCTAGAGAGATAGAATTACTGGCTACAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** * *
25690605 GTAAAATCTGTCATTCTTCATCTGCTCCACTACTGCTTAGGGAGATCAGATCTGTAATCTTCAAT
66 GTAAAATCTACCA-TCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25690670 CT
130 CT
* *
25690672 ATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCTCAAGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* *
25690737 GTAAAATCTACCATCCTTGATCTGCTCCACTACTACTGT-GGGAGATAGGATCTGTAATCTTCAA
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCT-TAGGGAGATAAGATCTGTAATCTTCAA
25690801 TCT
129 TCT
* * * *
25690804 ATTCCACTGCTGCCCAGGGAGACAGAATTACTGGCTTCAATGTACTGCACTATAACCTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * *
25690869 GTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAGTCTTCGAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25690934 CT
130 CT
* * * * * *
25690936 ACTACACTGCTGCCTAGAGAGATAGATTTATTGGCTTCAATGTACTCCACTGTAACCTCA-GGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * *
25691000 CTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25691065 CT
130 CT
* * * *
25691067 ATTTCACTGCTTCCCAGGGAGATAGATTTACTGACTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* *
25691132 CTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25691197 CT
130 CT
* * * **
25691199 ATTACACTGCTGCCTAGAGAGATAGAATTACTGGCAACAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** * *
25691264 GTAAAATCTGTCATCCTTCATCTGCTCCACTACTGCTTAGGGAGATCAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25691329 CT
130 CT
* * *
25691331 ATTCCACTGCTGCCCAGAGAGATAGAATTATTGGCTTCAATGTACTCTACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* *
25691396 GTAAAATCTACCATCCTTGATCTGCTCCACTACTGCTTTGGGAGATAGGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25691461 CT
130 CT
* * * * *
25691463 ATTCCACTGCTGCCCAGGGAGACAGAACTACTGGCTTCAATGTATTGCACTGTAACCTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* *
25691528 GTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAGTCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25691593 CT
130 CT
* * * * *
25691595 ACTACACTGCTGCCTAGGGAGATAGATTTATTGGCTTCAATGTACTCCACTGTAACCTCA-GGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * *
25691659 CTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25691724 CT
130 CT
* * * * *
25691726 ATTTCACTGCTGCCCAGGGAGATAGATTTACTGACTT-ATTTGTACTCTACTGTAACCTCAGGGA
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCA-ATGTACTCCACTGTAACCTCAGGGA
** * * *
25691790 GGTAAAATCCGCCATCAACCTTGATCTGCTCCACTACTGTTTACGGAGATAAGATTTGTAATCTT
65 GGTAAAATCTACCAT----CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT
*
25691855 TAATCT
126 CAATCT
* * *
25691861 ATTCCACTGCTACCCAGGGAGATAGAATTACTGGTTTCAATGTACTCCACTGTAACCTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
25691926 GTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25691991 CT
130 CT
* * *
25691993 ATTACACTGCTGCCCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTAAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** * * *
25692058 GTAAAATCTGTCATCCTTAATCTGCTCCGCTACTGCTTAGGGGGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25692123 CT
130 CT
* * * * *
25692125 ATTCCACTGCAGGCTAGGGAGACAGAATTATTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** * *
25692190 GTAAAATCTGTCATCCTTGATCTGCTCCACTACGGCTTAGGGAGATCAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25692255 CT
130 CT
* * *
25692257 ATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCCTCAATGTACTCCACTATAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* *
25692322 GTAAAATCTACCATCCTTGATCTGCTCCACTACTGCTTTGGGAGATAGGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25692387 CT
130 CT
* * * * *
25692389 ATTCCACTGCTGCCCTGGGAGACAGAATTACTGGCTTCAATGTACTGCACTGTAACGTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * * * * *
25692454 GTAAAATCTACCATATTTGATCTGCTCCACTACAGCTTAGGGAGATAAGATTTGTAGTTTTCGAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
*
25692519 AT
130 CT
* * * * *
25692521 ACTACACTGCTGCCCAGGGAGATAGATTTATTGGCTTCAATGTACTCCACTGTAACCTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * *
25692586 CTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25692651 CT
130 CT
* * *
25692653 ATTCCACTGCTGCCCGGGGAGATAGATTTACTGACTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * *
25692718 CTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25692783 CT
130 CT
* * *
25692785 ATTCCACTGCTGCCCAGGAAGATAGATTTACTGACTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** * * *
25692850 GTAAAATCCGCCATCAACCTTGATCTGCTCCACTACTGTTTACGGAGATAAGATTTGTAATCTTC
66 GTAAAATCTACCAT----CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC
25692915 AATCT
127 AATCT
* * * *
25692920 ATTCCACTGCTACCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTTATGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* *
25692985 GTAAAAACTACCATATTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25693050 CT
130 CT
* * * * *
25693052 ATTACACTGCTACCCAGAGAGATAGAATTACTCGCTTCAATGTACTCCACTGTAACCTAAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** * *
25693117 GTAAAATCTGTCATCCTTGATCTGCTCCGCTACTGCTTAGGGGGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25693182 CT
130 CT
* * * * * *
25693184 ATTCCACTGCAGGCTAGGGAGACAGAATTATTGGCTTCAATGAACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** *
25693249 GTAAAATCCGCCATCAACCTTGATCTTCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC
66 GTAAAATCTACCAT----CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC
25693314 AATCT
127 AATCT
* * *
25693319 ATTCCACTGGTACCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
*
25693384 GTAAAATCTACCATCTTTGATCTGCTCCACTACTGGTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25693449 CT
130 CT
* *
25693451 ATTACACTGCTGCCCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** * *
25693516 GTAAAATCTGTCATCCTTGATCTGCTCCGCTACTGCTTAGGGGGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25693581 CT
130 CT
* * * * *
25693583 ATTCCACTGCAGGCTAGGGAGATAGAATTATTGGATTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* *
25693648 GTAAAATCTATCATCCATGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25693713 CT
130 CT
* * * * * *
25693715 ATTCCACTGCTACCCAGGGAGATAGAATTACTGGCTTCATTATACTCCACTGTCACATCAGGCAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * * *
25693780 GTAAAATCTGCCATCATTGATCTGCTCCACTACTGCTTAAGGAGATAAGATTTTTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25693845 CT
130 CT
* * *
25693847 ATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTTTAACCTCAAGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
*
25693912 GTAAAAT-T-CGTCATCCTTGATCTGCCCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
66 GTAAAATCTAC--CAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
25693975 ATCT
128 ATCT
* * *
25693979 ATTCCACTGCTGCCCTGGGAGATAGAATTATTGGCTTCATTGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
25694044 GTAAAATCTACCATCCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25694109 CT
130 CT
* * *
25694111 ATTCAACTGCTGCTCAGGGAGATAGAATTACTGGCTTCAAGGTACTCCACTGTAACCAT-AGGGA
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACC-TCAGGGA
* * **
25694175 GGTAAAATCTACTATCTTTGATCTGCTCCACTACTGCTTAGGGAGATGAGATCTGTAATCTTCGC
65 GGTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAA
25694240 TCT
129 TCT
* *
25694243 ATTACACTGCTGCCCAGGGAGATAGATTTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * * * * *
25694308 CTAAAATCCACTATCTTTGATCTACTCCACCACTGCTTAGGGAGATAAGATCTGTAATCTTAAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25694373 CT
130 CT
* * *** *
25694375 ATTCCACTGCTTCCTAGGGAGATAGAATTACAAACTTCAATGTACTCAACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** **
25694440 GTAAAATCGGCCATCAACCTTGATCTGCTCCACTACTTTTTAGGGAGATAAGATCTGTAATCTTC
66 GTAAAATCTACCAT----CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC
25694505 AATCT
127 AATCT
* * * * *
25694510 ATTCCACTGCTACCCAGGGAGATAGAATTATTGGCTTCATTGTACTCCACTGTAACCTCAAGGTG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
25694575 GTAAAATCTACCATCCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25694640 CT
130 CT
* * * *
25694642 ATTCCACTGCTACCCAGGGACATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAAGTAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * * *
25694707 GTAAAATCTGCCATCATTAATCTGCTCCACTACTGCTTAAGGAGATAAGATTTGTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25694772 CT
130 CT
* * * *
25694774 ATTCCACTGTTACCTAGGGAGATAGAATTACTGGCATCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** * * *
25694839 GTAAAATCCGCCATCAACCTTGATCTGCTCCACTACTGTTTACGGAGATAAGATTTGTAATCTTC
66 GTAAAATCTACCAT----CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC
25694904 AATCT
127 AATCT
* * * *
25694909 ATTCCACTGCTGCCCAGGGAGACAGAATTACTGGCTTCAATGTATTGCACTGTAACCTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * *
25694974 GTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAGTCTTCGAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25695039 CT
130 CT
* * * * * *
25695041 ACTACACTCCTGCCTAGGGAGATAGATTTATTGGCTTCAATGTACTCCACTGTAACCTCA-GGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * *
25695105 CTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25695170 CT
130 CT
* * * *
25695172 ATTCCACTGGTGCCCAGGGAGATAGATTTACTGACTT-ATTTGTACTCCACTGTAACCTCAGGGA
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCA-ATGTACTCCACTGTAACCTCAGGGA
** * * *
25695236 GGTAAAATCCGCCATCAACCTTGATCTGCTCCACTACTGTTTACGGAGATAAGATTTGTAATCTT
65 GGTAAAATCTACCAT----CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT
25695301 CAATCT
126 CAATCT
* * * *
25695307 ATTCCACTACTACCCAGGGAGATAGAATTACTGGCTCCAATGTACTCCACTGTAACCTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
25695372 GTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25695437 CT
130 CT
* * * * * * *
25695439 ATTACGCTGGTGCCCAGAGAGGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCTAACGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** * *
25695504 GTAAAATCTGTCATCCTTGATCTGCTCCGCTACTGCTTAGGGGGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25695569 CT
130 CT
* * * * * *
25695571 ATTCCAGTGCAGGCTAGGGAGACAGAATTATTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * *
25695636 GTAAAATCTATCATCCTTAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25695701 CT
130 CT
* * ** *
25695703 ATTCCACTGGTACCCAGGGAGATAGAATTACTGGCTTCAATGTACTGTACTGTAACCTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* *
25695768 GTAAAATCTACGATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATATGTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25695833 CT
130 CT
* * *
25695835 ATTACACTGTTGCCCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** ** *
25695900 GTAAGTTCTGTCATCATTGATCTGCTCCACTACTGCTTAGGGGGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25695965 CT
130 CT
* * * * * *
25695967 ATTCCACTGCAGGCTAGGGAGACAGAATTATTGGCTTCAATATACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* *
25696032 GTAAAATCTATCATCCTTGATCTGCTCCACTACTGCTTAGGGAGATAATATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25696097 CT
130 CT
* * * * *
25696099 ATTCCACTGCTACCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTCACATCAGGCAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * * * *
25696164 GTAAAATCTGCCATCATTGATCTGTTCCACTACTACTTAAGGAGATAAGATTTGTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25696229 CT
130 CT
* *
25696231 ATTCCACTGCTGCCTAGGGAGATAGAATTACTGACTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* *
25696296 ATAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
*
25696361 AT
130 CT
* * *
25696363 ATTCCACTGCTGCCCTGGGAGATAGAATTATTGGCTTCATTGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
25696428 GTAAAATCTACCATCCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCAT-CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25696493 CT
130 CT
* * * * *
25696495 ATTCAACTACTGCTCAGGGAGATAGAATTACTGGCTTCAAGGTACTCCACTGTAACCTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * **
25696560 GTAAAATCTACTATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGCT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25696625 CT
130 CT
* * * * * * * **
25696627 ATTACTCTGCTGCCTAGGGAGATAGATTTATTAGATTCAATGTACTCCACTGTAACCTCAATGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
* * * * * * * *
25696692 CTAAAATCCACCATCTTTGATCTACTCCGCCACTGCTTAGGGAGATAAGATCCGTAATTTTAAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25696757 CT
130 CT
* * ***
25696759 ATTCCACTGCTTCCTAGGGAGATAGAATTACAAACTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** *
25696824 GTAAAATCCGCCATCAACCTTGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTC
66 GTAAAATCTACCAT----CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC
25696889 AATCT
127 AATCT
* * *
25696894 ATTCCACTGCTACCCAGGAAGATAGAATTACTGACTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
*
25696959 GTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCTACCATC-TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAAT
25697024 CT
130 CT
* * * *
25697026 ATTCCACTGCTACCTAGGGAGATAAAATTACTGGCTTCAATGTACTCCACTGTAACCTGAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
25697091 GTAAAATC-AGCCATCAACCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT
66 GTAAAATCTA-CCAT----CTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT
25697155 CAATCT
126 CAATCT
* * * *
25697161 ATTCCACTGCTGCCCAGGGAGAGAGAGTTACTAGCTTCAATGTACTCTACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
25697226 GTAAAATCT
66 GTAAAATCT
25697235 GCCGTCAACC
Statistics
Matches: 7162, Mismatches: 771, Indels: 158
0.89 0.10 0.02
Matches are distributed among these distances:
130 6 0.00
131 484 0.07
132 5722 0.80
133 16 0.00
134 1 0.00
135 924 0.13
136 9 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (131 bp):
ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
GTAAAATCTACCATCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATC
T
Found at i:25690987 original size:43 final size:44
Alignment explanation
Indices: 25690888--25690987 Score: 103
Period size: 43 Copynumber: 2.3 Consensus size: 44
25690878 ACCATCTTTG
* * * * * * *
25690888 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAGTCTTCG
1 ATCTACTCCACTGCTGCCTAGAGAGATAAGATTTATAGGCTTCA
* *
25690932 ATCTACTACACTGCTGCCTAGAGAGAT-AGATTTATTGGCTTCA
1 ATCTACTCCACTGCTGCCTAGAGAGATAAGATTTATAGGCTTCA
*
25690975 ATGTACTCCACTG
1 ATCTACTCCACTG
25690988 TAACCTCAGG
Statistics
Matches: 45, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
43 23 0.51
44 22 0.49
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (44 bp):
ATCTACTCCACTGCTGCCTAGAGAGATAAGATTTATAGGCTTCA
Found at i:25691623 original size:43 final size:44
Alignment explanation
Indices: 25691555--25691646 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 44
25691545 TGATCTGCTC
* * * *
25691555 CACTACTGCTTAGGGAGATAAGATTTGTAGTCTTCAATCTACTA
1 CACTGCTGCCTAGGGAGATAAGATTTATAGGCTTCAATCTACTA
* * *
25691599 CACTGCTGCCTAGGGAGAT-AGATTTATTGGCTTCAATGTACTC
1 CACTGCTGCCTAGGGAGATAAGATTTATAGGCTTCAATCTACTA
25691642 CACTG
1 CACTG
25691647 TAACCTCAGG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 24 0.59
44 17 0.41
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (44 bp):
CACTGCTGCCTAGGGAGATAAGATTTATAGGCTTCAATCTACTA
Found at i:25697032 original size:44 final size:44
Alignment explanation
Indices: 25689150--25697182 Score: 681
Period size: 44 Copynumber: 182.1 Consensus size: 44
25689140 GTAACATCAA
* ** *
25689150 GGAGGTAAAATCTGCCATCTTCGATCTACTCCACTACTGCCTT-G
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTG-CTTAG
* * * *
25689194 GGAGATAAGATCTGTAATCGTCAATCTATTCCACTACTGCCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * *
25689238 GGAGATAGAACTACTG---GCTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * * *
25689282 GAAG-TAAAATCTGTCATCCTT-GATCTGCTCCACTGCTACTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * **
25689325 GGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25689369 GGAGATAGAAT-TACT-AGCTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCT-GTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* ** * * *
25689413 GGAGGA-AAAATCCGCCATCCTT-GATCTGCACCACTACTGCTTAG
1 GGA-GATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * * **
25689457 GGAGATAAGATCTGTAATCTTAAATCTATTCCACTGCTACCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * *
25689501 GGAGATAGAATTACTG---GCTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * ** *
25689545 GGAGGTAAAATCTGTCATCCTT-GATCCGCTCCACTTCTGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * **
25689589 GGAGATCAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * *** * *
25689633 GGAGATAGAAT-TATTGGCTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* *** * **
25689677 GGAGGTAAAATCTACCATCCTT-GATCCGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * **
25689721 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * * * **
25689765 GGAGATAGAATTACTG---GCATCAATGTACTCTATTGCAACCTTAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCACTAC-TGCTTAG
* *** ** * *
25689809 GGAGGTAAAATCTACCATCTTTGATCTGCTCCACTATTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * **
25689853 GGAGATAAGATCTGTAATCTTCAATCTATTACACTGCTCCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25689897 AGAGATAGAATTACTG---GCTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* **** ** * *
25689941 GGAGCTAAAATCCACCATCTTTGATCTACTCCAATATTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * **
25689985 GGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * *
25690029 GGAGATAGAATTACTG--A-CTTTAATATACTCCACTGTAAC--CTGAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * **** ** * * *
25690073 AGAGCTAAAATCCACCATCTTTGATCTACTCCAATATTGCTTAA
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * **
25690117 GGAGATAAGATCTATAATCTTTAATCTATTCCACTACTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * *
25690161 GGAGATAGAATTACTG--A-CTTTAATATACTCTGATGTAAC--CTCAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTC-CA-CT-ACTGCTTAG
* ** * ** * *
25690205 GGAGGTAAAATCTGCCATCATT-GATCTGTTCCACTGCTACTTAG
1 GGAGATAAAATCTGTAATC-TTCAATCTACTCCACTACTGCTTAG
* * * * * *
25690249 GGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTTCCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * *
25690293 GGAGATAGAATTACTG---GC-TCAAATGTACTCCACTGTAAC--CTCAG
1 GGAGATA-AAAT-CTGTAATCTTC-AATCTACTCCAC--T-ACTGCTTAG
* ** * *
25690337 GGACG-TAAAATCCGCCATCCTT-GATCTGCTCCACTACTGCTTAG
1 GGA-GATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * * **
25690381 GGAAATAAGATCTGTAATCTTCAATCTATTCCACTGCTACCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * *
25690425 GGAGATAGAATTACTG---GCTTCAATGTACTCCACTTTAAC--CTTAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* **** ** *
25690469 GGAGGTAAAATCAACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * *
25690513 GGAGATAAGATTTGTAATCTTCAATCTATTACACTGCTGCCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * *
25690557 AGAGATAGAATTACTG---GCTACAATGTACTCCACTGTAAC--CTCAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * *
25690601 GGAGGTAAAATCTGTCATTCTTC-ATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGT-AATCTTCAATCTACTCCACTACTGCTTAG
* * * * **
25690645 GGAGATCAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * *** * * *
25690689 GGAGATAGAAT-TATTGGCTTCAATGTACTCCACTGTAAC--CTCAA
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* *** * * *
25690733 GGAGGTAAAATCTACCATCCTT-GATCTGCTCCACTACTACTGT-G
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCT-TAG
** * * **
25690777 GGAGATAGGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * *
25690821 GGAGACAGAATTACTG---GCTTCAATGTACTGCACTA-TAACCTTAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCACTACT--GCTTAG
* *** ** *
25690865 GGAGGTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * * *
25690909 GGAGATAAGATTTGTAGTCTTCGATCTACTACACTGCTGCCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25690953 AGAGAT-AGAT-T-TATTGGCTTCAATGTACTCCACTGTAAC--CTCA-
1 GGAGATAAAATCTGTAAT--CTTCAATCTACTCCAC--T-ACTGCTTAG
* **** ** *
25690996 GGAGCTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * * **
25691040 GGAGATAAGATCTGTAATATTCAATCTATTTCACTGCTTCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * *
25691084 GGAGAT-AGAT-T-TACTGACTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAAT--CTTCAATCTACTCCAC--T-ACTGCTTAG
* **** ** *
25691128 GGAGCTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25691172 GGAGATAAGATCTGTAATCTTCAATCTATTACACTGCTGCCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25691216 AGAGATAGAATTACTGGCAA----CAATGTACTCCACTGTAAC--CTCAG
1 GGAGATA-AAAT-CT-GTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * *
25691260 GGAGGTAAAATCTGTCATCCTTC-ATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * **
25691304 GGAGATCAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * *** * * *
25691348 AGAGATAGAAT-TATTGGCTTCAATGTACTCTACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* *** * * *
25691392 GGAGGTAAAATCTACCATCCTT-GATCTGCTCCACTACTGCTTTG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
** * * **
25691436 GGAGATAGGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * *
25691480 GGAGACAGAACTACTG---GCTTCAATGTATTGCACTGTAAC--CTTAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* *** ** *
25691524 GGAGGTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * *
25691568 GGAGATAAGATTTGTAGTCTTCAATCTACTACACTGCTGCCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * *
25691612 GGAGAT-AGAT-T-TATTGGCTTCAATGTACTCCACTGTAAC--CTCA-
1 GGAGATAAAATCTGTAAT--CTTCAATCTACTCCAC--T-ACTGCTTAG
* **** ** *
25691655 GGAGCTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * **
25691699 GGAGATAAGATCTGTAATATTCAATCTATTTCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * *
25691743 GGAGAT-AGAT-T-TACTGACTT-ATTTGTACTCTACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAAT--CTTCA-ATCTACTCCAC--T-ACTGCTTAG
* * * * * * *
25691787 GGAGGTAAAATCCGCCATCAACCTT-GATCTGCTCCACTACTGTTTAC
1 GGAGATAAAATCTG---T-AATCTTCAATCTACTCCACTACTGCTTAG
* * * * * * **
25691834 GGAGATAAGATTTGTAATCTTTAATCTATTCCACTGCTACCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * *
25691878 GGAGATAGAATTACTG--GT-TTCAATGTACTCCACTGTAAC--CTTAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* *** ** *
25691922 GGAGGTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * **
25691966 GGAGATAAGATCTGTAATCTTCAATCTATTACACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25692010 AGAGATAGAATTACTG---GCTTCAATGTACTCCACTGTAAC--CTAAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * *
25692054 GGAGGTAAAATCTGTCATCCTT-AATCTGCTCCGCTACTGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * *
25692098 GGGGATAAGATCTGTAATCTTCAATCTATTCCACTGCAGGC-TAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTAC-TGCTTAG
* * * *** * *
25692142 GGAGACAGAAT-TATTGGCTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * *
25692186 GGAGGTAAAATCTGTCATCCTT-GATCTGCTCCACTACGGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * **
25692230 GGAGATCAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * *** * * * *
25692274 GGAGATAGAAT-TATTGGCCTCAATGTACTCCACTA-TAACCTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACT--GCTTAG
* *** * * *
25692318 GGAGGTAAAATCTACCATCCTT-GATCTGCTCCACTACTGCTTTG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
** * * *
25692362 GGAGATAGGATCTGTAATCTTCAATCTATTCCACTGCTGCCCT-G
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTG-CTTAG
* * * * *
25692406 GGAGACAGAATTACTG---GCTTCAATGTACTGCACTGTAAC-G-TTAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* *** * ** * *
25692450 GGAGGTAAAATCTACCATATTTGATCTGCTCCACTACAGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * * * * **
25692494 GGAGATAAGATTTGTAGTTTTCGATATACTACACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * *
25692538 GGAGAT-AGAT-T-TATTGGCTTCAATGTACTCCACTGTAAC--CTTAG
1 GGAGATAAAATCTGTAAT--CTTCAATCTACTCCAC--T-ACTGCTTAG
* **** ** *
25692582 GGAGCTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * ***
25692626 GGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCCGG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * *
25692670 GGAGAT-AGAT-T-TACTGACTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAAT--CTTCAATCTACTCCAC--T-ACTGCTTAG
* **** ** *
25692714 GGAGCTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * **
25692758 GGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25692802 GAAGAT-AGAT-T-TACTGACTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAAT--CTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * * * *
25692846 GGAGGTAAAATCCGCCATCAACCTT-GATCTGCTCCACTACTGTTTAC
1 GGAGATAAAATCTG---T-AATCTTCAATCTACTCCACTACTGCTTAG
* * * * * **
25692893 GGAGATAAGATTTGTAATCTTCAATCTATTCCACTGCTACCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25692937 GGAGATAGAAT-TACT-AGCTTCAATGTACTCCACTGTAAC--CTTAT
1 GGAGATAAAATCT-GTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * *** * ** *
25692981 GGAGGTAAAAACTACCATATTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * **
25693025 GGAGATAAGATCTGTAATCTTCAATCTATTACACTGCTACCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25693069 AGAGATAGAA--T-TACTCGCTTCAATGTACTCCACTGTAAC--CTAAG
1 GGAGATAAAATCTGTAAT--CTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * *
25693113 GGAGGTAAAATCTGTCATCCTT-GATCTGCTCCGCTACTGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * *
25693157 GGGGATAAGATCTGTAATCTTCAATCTATTCCACTGCAGGC-TAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTAC-TGCTTAG
* * * *** ** *
25693201 GGAGACAGAAT-TATTGGCTTCAATGAACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * *
25693245 GGAGGTAAAATCCGCCATCAACCTT-GATCTTCTCCACTACTGCTTAG
1 GGAGATAAAATCTG---T-AATCTTCAATCTACTCCACTACTGCTTAG
* * ** * **
25693292 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGGTACCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * *
25693336 GGAGATAGAATTACTG---GCTTCAATGTACTCCACTGTAAC--CTTAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* *** ** * *
25693380 GGAGGTAAAATCTACCATCTTTGATCTGCTCCACTACTGGTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * **
25693424 GGAGATAAGATCTGTAATCTTCAATCTATTACACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25693468 AGAGATAGAATTACTG---GCTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * *
25693512 GGAGGTAAAATCTGTCATCCTT-GATCTGCTCCGCTACTGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * *
25693556 GGGGATAAGATCTGTAATCTTCAATCTATTCCACTGCAGGC-TAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTAC-TGCTTAG
* * **** * *
25693600 GGAGATAGAAT-TATTGGATTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * *
25693644 GGAGGTAAAATCTATCATC--CATGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCA--ATCTACTCCACTACTGCTTAG
* * * * **
25693688 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTACCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * * *
25693732 GGAGATAGAATTACTG---GCTTCATTATACTCCACT-GTCACATCAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCACTACT-GC-TTAG
* * ** * * *
25693776 GCAGGTAAAATCTGCCATCATT-GATCTGCTCCACTACTGCTTAA
1 GGAGATAAAATCTGTAATC-TTCAATCTACTCCACTACTGCTTAG
* * * * * *
25693820 GGAGATAAGATTTTTAATCTTCAATCTATTCCACTGCTGCCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25693864 GGAGATAGAATTACTG---GCTTCAATGTACTCCACTTTAAC--CTCAA
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * *
25693908 GGAGGTAAAAT-TCGTCATCCTT-GATCTGCCCCACTACTGCTTAG
1 GGAGATAAAATCT-GTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * *
25693952 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCT-G
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTG-CTTAG
* * *** * * *
25693996 GGAGATAGAAT-TATTGGCTTCATTGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* *** * *
25694040 GGAGGTAAAATCTACCATCCTT-GATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * *
25694084 GGAGATAAGATCTGTAATCTTCAATCTATTCAACTGCTGCTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * ** *
25694128 GGAGATAGAATTACTG---GCTTCAAGGTACTCCACTGTAAC--CATAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * ** *
25694172 GGAGGTAAAATCTACT-ATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCT-GTAATCTTCAATCTACTCCACTACTGCTTAG
* * ** * * * **
25694216 GGAGATGAGATCTGTAATCTTCGCTCTATTACACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * *
25694260 GGAGAT-AGAT-T-TACTGGCTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAAT--CTTCAATCTACTCCAC--T-ACTGCTTAG
* ** ** *
25694304 GGAGCTAAAATCCACT-ATCTTTGATCTACTCCACCACTGCTTAG
1 GGAGATAAAAT-CTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * *
25694348 GGAGATAAGATCTGTAATCTTAAATCTATTCCACTGCTTCCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* ** * * * *
25694392 GGAGATAGAAT-TACAAACTTCAATGTACTCAACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * * **
25694436 GGAGGTAAAATCGGCCATCAACCTT-GATCTGCTCCACTACTTTTTAG
1 GGAGATAAAATCTG---T-AATCTTCAATCTACTCCACTACTGCTTAG
* * * * **
25694483 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTACCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * *** * * * *
25694527 GGAGATAGAAT-TATTGGCTTCATTGTACTCCACTGTAAC--CTCAA
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * *** * *
25694571 GGTGGTAAAATCTACCATCCTT-GATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * **
25694615 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTACCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * *
25694659 GGACATAGAATTACTG---GCTTCAATGTACTCCACTGTAAC--CTCAA
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * ** * *
25694703 GTAGGTAAAATCTGCCATCATT-AATCTGCTCCACTACTGCTTAA
1 GGAGATAAAATCTGTAATC-TTCAATCTACTCCACTACTGCTTAG
* * * ** * *
25694747 GGAGATAAGATTTGTAATCTTCAATCTATTCCACTGTTACCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25694791 GGAGATAGAATTACTG---GCATCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * * * *
25694835 GGAGGTAAAATCCGCCATCAACCTT-GATCTGCTCCACTACTGTTTAC
1 GGAGATAAAATCTG---T-AATCTTCAATCTACTCCACTACTGCTTAG
* * * * **
25694882 GGAGATAAGATTTGTAATCTTCAATCTATTCCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * *
25694926 GGAGACAGAATTACTG---GCTTCAATGTATTGCACTGTAAC--CTTAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* *** ** *
25694970 GGAGGTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * * *
25695014 GGAGATAAGATTTGTAGTCTTCGATCTACTACACTCCTGCCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * *
25695058 GGAGAT-AGAT-T-TATTGGCTTCAATGTACTCCACTGTAAC--CTCA-
1 GGAGATAAAATCTGTAAT--CTTCAATCTACTCCAC--T-ACTGCTTAG
* **** ** *
25695101 GGAGCTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * ** **
25695145 GGAGATAAGATCTGTAATATTCAATCTATTCCACTGGTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25695189 GGAGAT-AGAT-T-TACTGACTT-ATTTGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAAT--CTTCA-ATCTACTCCAC--T-ACTGCTTAG
* * * * * * *
25695233 GGAGGTAAAATCCGCCATCAACCTT-GATCTGCTCCACTACTGTTTAC
1 GGAGATAAAATCTG---T-AATCTTCAATCTACTCCACTACTGCTTAG
* * * * **
25695280 GGAGATAAGATTTGTAATCTTCAATCTATTCCACTACTACCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * *
25695324 GGAGATAGAATTACTG---GCTCCAATGTACTCCACTGTAAC--CTTAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* *** ** *
25695368 GGAGGTAAAATCTACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * ** **
25695412 GGAGATAAGATCTGTAATCTTCAATCTATTACGCTGGTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * * *
25695456 AGAGGTAGAATTACTG---GCTTCAATGTACTCCACTGTAAC--CTAAC
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * *
25695500 GGAGGTAAAATCTGTCATCCTT-GATCTGCTCCGCTACTGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * * *
25695544 GGGGATAAGATCTGTAATCTTCAATCTATTCCAGTGCAGGC-TAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTAC-TGCTTAG
* * * *** * *
25695588 GGAGACAGAAT-TATTGGCTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * *
25695632 GGAGGTAAAATCTATCATCCTT-AATCTACTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * ** * **
25695676 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGGTACCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * **
25695720 GGAGATAGAATTACTG---GCTTCAATGTACTGTACTGTAAC--CTTAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* *** ** *
25695764 GGAGGTAAAATCTACGATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * ** **
25695808 GGAGATAAGATATGTAATCTTCAATCTATTACACTGTTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25695852 AGAGATAGAATTACTG---GCTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* ** * * *
25695896 GGAGGTAAGTTCTGTCATCATT-GATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATC-TTCAATCTACTCCACTACTGCTTAG
* * * * *
25695940 GGGGATAAGATCTGTAATCTTCAATCTATTCCACTGCAGGC-TAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTAC-TGCTTAG
* * * *** * *
25695984 GGAGACAGAAT-TATTGGCTTCAATATACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * *
25696028 GGAGGTAAAATCTATCATCCTT-GATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * * *
25696072 GGAGATAATATCTGTAATCTTCAATCTATTCCACTGCTACCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * *
25696116 GGAGATAGAATTACTG---GCTTCAATGTACTCCACT-GTCACATCAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCACTACT-GC-TTAG
* * ** * ** * *
25696160 GCAGGTAAAATCTGCCATCATT-GATCTGTTCCACTACTACTTAA
1 GGAGATAAAATCTGTAATC-TTCAATCTACTCCACTACTGCTTAG
* * * * *
25696204 GGAGATAAGATTTGTAATCTTCAATCTATTCCACTGCTGCCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * *
25696248 GGAGATAGAATTACTG--A-CTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
**** ** *
25696292 GGAGATAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25696336 GGAGATAAGATCTGTAATCTTCAATATATTCCACTGCTGCCCT-G
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTG-CTTAG
* * *** * * *
25696380 GGAGATAGAAT-TATTGGCTTCATTGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* *** * *
25696424 GGAGGTAAAATCTACCATCCTT-GATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAAT-CTTCAATCTACTCCACTACTGCTTAG
* * * *
25696468 GGAGATAAGATCTGTAATCTTCAATCTATTCAACTACTGCTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * **
25696512 GGAGATAGAATTACTG---GCTTCAAGGTACTCCACTGTAAC--CTTAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * **
25696556 GGAGGTAAAATCTACT-ATCTTTGATCTACTCCACTACTGCTTAG
1 GGAGATAAAATCT-GTAATCTTCAATCTACTCCACTACTGCTTAG
* ** * * * * *
25696600 GGAGATAAGATCTGTAATCTTCGCTCTATTACTCTGCTGCCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * ** * * *
25696644 GGAGAT-AGATTTATTAGATTCAATGTACTCCACTGTAAC--CTCAA
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * **** ** * *
25696688 TGAGCTAAAATCCACCATCTTTGATCTACTCCGCCACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * * * * *
25696732 GGAGATAAGATCCGTAATTTTAAATCTATTCCACTGCTTCCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* ** * * *
25696776 GGAGATAGAAT-TACAAACTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * * *
25696820 GGAGGTAAAATCCGCCATCAACCTT-GATCTGCTCCACTACTGTTTAG
1 GGAGATAAAATCTG---T-AATCTTCAATCTACTCCACTACTGCTTAG
* * * * **
25696867 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTACCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * *
25696911 GAAGATAGAATTACTG--A-CTTCAATGTACTCCACTGTAAC--CTCAG
1 GGAGATA-AAAT-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* **** ** *
25696955 GGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * * * *
25696999 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTACCTAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
* * *
25697043 GGAGATAAAATTACTG---GCTTCAATGTACTCCACTGTAAC--CTGAG
1 GGAGATAAAA-T-CTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAG
* * * * *
25697087 GGAGGTAAAATCAGCCATCAACCTT-GATCTGCTCCACTACTGCTTAG
1 GGAGATAAAATCTG---T-AATCTTCAATCTACTCCACTACTGCTTAG
* * * **
25697134 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
1 GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
25697178 GGAGA
1 GGAGA
25697183 GAGAGTTACT
Statistics
Matches: 5373, Mismatches: 1958, Indels: 1316
0.62 0.23 0.15
Matches are distributed among these distances:
41 46 0.01
42 173 0.03
43 1155 0.21
44 2867 0.53
45 693 0.13
46 221 0.04
47 116 0.02
48 69 0.01
49 27 0.01
50 3 0.00
51 3 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
GGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAG
Found at i:25698475 original size:6 final size:6
Alignment explanation
Indices: 25698449--25698491 Score: 50
Period size: 6 Copynumber: 6.5 Consensus size: 6
25698439 TCCACTTTAC
25698449 TTTTCCA TTCTTCA TTTTTCA TTTTCA CTTTTCA TTTTCA TTT
1 TTTT-CA TT-TTCA -TTTTCA TTTTCA -TTTTCA TTTTCA TTT
25698492 CATCATTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
6 15 0.45
7 14 0.42
8 4 0.12
ACGTcount: A:0.14, C:0.21, G:0.00, T:0.65
Consensus pattern (6 bp):
TTTTCA
Found at i:25698480 original size:13 final size:13
Alignment explanation
Indices: 25698447--25698488 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
25698437 CCTCCACTTT
25698447 ACTTTTCCATTCTTC
1 ACTTTT-CATT-TTC
*
25698462 ATTTTTCATTTTC
1 ACTTTTCATTTTC
25698475 ACTTTTCATTTTC
1 ACTTTTCATTTTC
25698488 A
1 A
25698489 TTTCATCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 16 0.64
14 4 0.16
15 5 0.20
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.60
Consensus pattern (13 bp):
ACTTTTCATTTTC
Found at i:25704242 original size:22 final size:21
Alignment explanation
Indices: 25704190--25704243 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
25704180 GTAACCCAAA
* *
25704190 TGAAAGAAAAAGAAAGAAGAG
1 TGAAATAAAAAGAAAGAAAAG
*
25704211 -AAAATGAAAAAGATAAGAAAAG
1 TGAAAT-AAAAAGA-AAGAAAAG
25704233 TGAAATAAAAA
1 TGAAATAAAAA
25704244 AATTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
20 3 0.12
21 7 0.27
22 12 0.46
23 4 0.15
ACGTcount: A:0.70, C:0.00, G:0.20, T:0.09
Consensus pattern (21 bp):
TGAAATAAAAAGAAAGAAAAG
Found at i:25704243 original size:23 final size:21
Alignment explanation
Indices: 25704196--25704244 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 21
25704186 CAAATGAAAG
* *
25704196 AAAAAGAAAGAAGAGAAAATG
1 AAAAAGAAAGAAAAGAAAATA
*
25704217 AAAAAGATAAGAAAAGTGAAATA
1 AAAAAGA-AAGAAAAG-AAAATA
25704240 AAAAA
1 AAAAA
25704245 ATTCAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 7 0.30
22 7 0.30
23 9 0.39
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.08
Consensus pattern (21 bp):
AAAAAGAAAGAAAAGAAAATA
Found at i:25707306 original size:19 final size:20
Alignment explanation
Indices: 25707267--25707306 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
25707257 TGCAAGCCGA
**
25707267 CTTTAGCTCAATTTTAGCTC
1 CTTTAGCTCAATTCCAGCTC
25707287 CTTTAGCTC-ATTCCAGCTC
1 CTTTAGCTCAATTCCAGCTC
25707306 C
1 C
25707307 AACCAGCTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.17, C:0.33, G:0.10, T:0.40
Consensus pattern (20 bp):
CTTTAGCTCAATTCCAGCTC
Found at i:25710003 original size:135 final size:135
Alignment explanation
Indices: 25709761--25710030 Score: 486
Period size: 135 Copynumber: 2.0 Consensus size: 135
25709751 TCTCTGATCA
* * * *
25709761 GCGGTAACCCAGGTAATTCTTTTGGAAATAGATCTAGATAGTCGCAAACCACGAGAACTGATTCT
1 GCGGTAACCCAGGTAATTCTTCTGGAAACAGATCTAGATACTCGCAAACCACAAGAACTGATTCT
25709826 ACCTTCAACTTAGAAACTCTAGAATCAAATACATAGGCAAGGTATGCAACACAACATTTTCTCAT
66 ACCTTCAACTTAGAAACTCTAGAATCAAATACATAGGCAAGGTATGCAACACAACATTTTCTCAT
25709891 ATATC
131 ATATC
25709896 GCGGTAACCCAGGTAATTCTTCTGGAAACAGATCTAGATACTCGCAAACCACAAGAACTGATTCT
1 GCGGTAACCCAGGTAATTCTTCTGGAAACAGATCTAGATACTCGCAAACCACAAGAACTGATTCT
* *
25709961 ACCTTCAACTTAGAAACTCTAGAATCAAATACATAGGCAAGGTATGCATCACAACCTTTTCTCAT
66 ACCTTCAACTTAGAAACTCTAGAATCAAATACATAGGCAAGGTATGCAACACAACATTTTCTCAT
25710026 ATATC
131 ATATC
25710031 TCTGTGTTGA
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
135 129 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (135 bp):
GCGGTAACCCAGGTAATTCTTCTGGAAACAGATCTAGATACTCGCAAACCACAAGAACTGATTCT
ACCTTCAACTTAGAAACTCTAGAATCAAATACATAGGCAAGGTATGCAACACAACATTTTCTCAT
ATATC
Found at i:25714402 original size:5 final size:5
Alignment explanation
Indices: 25714392--25714423 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
25714382 AGTTCTATAC
*
25714392 TAATT TAATT TAATT TAATA TAATT TAATT TA
1 TAATT TAATT TAATT TAATT TAATT TAATT TA
25714424 CGTCTGTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
TAATT
Found at i:25714781 original size:12 final size:12
Alignment explanation
Indices: 25714764--25714789 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
25714754 ATAAGGCTTA
25714764 TGCATGACATAT
1 TGCATGACATAT
25714776 TGCATGACATAT
1 TGCATGACATAT
25714788 TG
1 TG
25714790 GAGAACTGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (12 bp):
TGCATGACATAT
Found at i:25719138 original size:50 final size:50
Alignment explanation
Indices: 25719057--25719172 Score: 135
Period size: 50 Copynumber: 2.3 Consensus size: 50
25719047 GAGATCTCAT
* * * ** *
25719057 GTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGGTCCCCC
1 GTAAGACCATGTCTGGAACACGACATTGGCACCAAGATGAGAACTCCCAC
* *
25719107 GTAAGACCATGTCTGGAACACGAC-TTGGGCACCAATATGAGAACTCCCAT
1 GTAAGACCATGTCTGGAACACGACATT-GGCACCAAGATGAGAACTCCCAC
*
25719157 GTAAGACCATATCTGG
1 GTAAGACCATGTCTGG
25719173 GATATGGCAT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
49 2 0.04
50 54 0.96
ACGTcount: A:0.29, C:0.25, G:0.26, T:0.20
Consensus pattern (50 bp):
GTAAGACCATGTCTGGAACACGACATTGGCACCAAGATGAGAACTCCCAC
Found at i:25726741 original size:50 final size:51
Alignment explanation
Indices: 25726635--25726775 Score: 160
Period size: 50 Copynumber: 2.8 Consensus size: 51
25726625 TCATTGAGAC
* * * * * *
25726635 TATGAGAGGTCCCATGTAAAACCATGTCTTGGACATGGCGTTGGAACCGAG
1 TATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCATGGGAACCGAA
* * *
25726686 T-TGAGAGGTCCCCTGTAAGGCCATATCTGGGACATGGCATGGGCACC-AA
1 TATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCATGGGAACCGAA
** *
25726735 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCAT
1 TATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCAT
25726776 TGGCGGTACA
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
49 2 0.03
50 72 0.96
51 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (51 bp):
TATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCATGGGAACCGAA
Found at i:25736001 original size:15 final size:15
Alignment explanation
Indices: 25735981--25736013 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
25735971 GGGGCTTTAC
25735981 ACACAAAATTATACA
1 ACACAAAATTATACA
25735996 ACACAAAATTATACA
1 ACACAAAATTATACA
25736011 ACA
1 ACA
25736014 ACCATAGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.61, C:0.21, G:0.00, T:0.18
Consensus pattern (15 bp):
ACACAAAATTATACA
Found at i:25740726 original size:22 final size:21
Alignment explanation
Indices: 25740701--25740741 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
25740691 TTCAATTCAC
*
25740701 CCAAAATTATTCTCAAAATTAG
1 CCAAAAATATTCT-AAAATTAG
25740723 CCAAAAATATTCTAAAATT
1 CCAAAAATATTCTAAAATT
25740742 TCTCAAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (21 bp):
CCAAAAATATTCTAAAATTAG
Found at i:25746234 original size:38 final size:38
Alignment explanation
Indices: 25746183--25746258 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
25746173 GTACTTCTAC
*
25746183 AGAGTTCATTTCTTACGGTTTTTCTCTTTAAACCAACA
1 AGAGTTCATTTCTTACGGTTTTTCTCTTCAAACCAACA
25746221 AGAGTTCATTTCTTACGGTTTTTCTCTTCAAACCAACA
1 AGAGTTCATTTCTTACGGTTTTTCTCTTCAAACCAACA
25746259 CTTAACATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.41
Consensus pattern (38 bp):
AGAGTTCATTTCTTACGGTTTTTCTCTTCAAACCAACA
Found at i:25749914 original size:43 final size:43
Alignment explanation
Indices: 25749853--25750053 Score: 330
Period size: 43 Copynumber: 4.7 Consensus size: 43
25749843 TTAGCCAGAC
* * *
25749853 ATGGTCTTACATAGAAATCTCATATCGATGCCAATAGCCCAGCT
1 ATGGTCTTACA-CGAAATCTCAAATCGATGCCAATAGCCTAGCT
25749897 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCTAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCTAGCT
* *
25749940 ATGGTCTTACACAAAATCTCAAATCGATGACAATAGCCTAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCTAGCT
* *
25749983 ATGGTCTTACATGAAATCTCAAATCGATGCCAATAGCCTAACT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCTAGCT
25750026 ATGGTCTTACACGAAATCTCAAATCGAT
1 ATGGTCTTACACGAAATCTCAAATCGAT
25750054 ATTGGAACAT
Statistics
Matches: 147, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
43 136 0.93
44 11 0.07
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCTAGCT
Found at i:25754850 original size:50 final size:50
Alignment explanation
Indices: 25754745--25754851 Score: 128
Period size: 50 Copynumber: 2.1 Consensus size: 50
25754735 TTATGGAGGT
* * * *
25754745 TATGAGAGGTCCCACGTAAGACCATGCATGGGACATGGCATTGGTACCGA
1 TATGAGAGGTCCCACGTAAAACCATGCATAGGACATGGCATGGGCACCGA
* *
25754795 GATGAGAGGTTCCC-CGTAAAACCATGTC-TAGGACATGGCATGGGCATCGA
1 TATGAGAGG-TCCCACGTAAAACCATG-CATAGGACATGGCATGGGCACCGA
25754845 TATGAGA
1 TATGAGA
25754852 ACTCTCATGT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
50 43 0.90
51 5 0.10
ACGTcount: A:0.29, C:0.21, G:0.30, T:0.21
Consensus pattern (50 bp):
TATGAGAGGTCCCACGTAAAACCATGCATAGGACATGGCATGGGCACCGA
Found at i:25755166 original size:20 final size:20
Alignment explanation
Indices: 25755141--25755179 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
25755131 TGAGTTATTT
25755141 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
25755161 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
25755180 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:25755364 original size:20 final size:20
Alignment explanation
Indices: 25755339--25755377 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
25755329 TGAGTTATTT
25755339 AAGTAAGAAAGTAAGTAAAC
1 AAGTAAGAAAGTAAGTAAAC
*
25755359 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAAAGTAAGTAAA
25755378 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.59, C:0.03, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAAAGTAAGTAAAC
Found at i:25755410 original size:198 final size:197
Alignment explanation
Indices: 25755073--25755465 Score: 707
Period size: 198 Copynumber: 2.0 Consensus size: 197
25755063 AAGGGTTAAG
*
25755073 AATATCTCAGTTATCAGTTAAAAAAAAGTTTCAGTAAGGGAGGAGTAAGTTATAATCATGAGTTA
1 AATATCTCAGTTATCAGTTAAAAAAAAGTTTCAGCAAGGGAGGAGTAAGTTATAATCATGAGTTA
* *
25755138 TTTAAGTAAGCAAGTAAGTAAACAAGTAAGAGAGTAAGTAAAGAAGAAAGTAAAGATCATGATAC
66 TTTAAGTAAGAAAGTAAGTAAACAAGTAAGAGAGTAAGTAAAGAAGAAAGTAAAGATCATGAGAC
25755203 TTGATGATAATTTATGAGCATAATTATTTATGATAAATGTTGCTATTTATTTGCTTGTAAACTTA
131 TTGATGATAATTTATGAGCATAATTATTTATGATAAATGTTGCTATTTATTTGCTTGTAAACTTA
25755268 CT
196 CT
25755270 AATATCTCAGTTATCAGTTGAGAAAAAAA-TTTCAGCAAGGGAGGAGTAAGTTATAATCATGAGT
1 AATATCTCAGTTATCAGTT-A-AAAAAAAGTTTCAGCAAGGGAGGAGTAAGTTATAATCATGAGT
25755334 TATTTAAGTAAGAAAGTAAGTAAACAAGTAAGAGAGTAAGTAAAGAAGAAAGTAAAGATCATGAG
64 TATTTAAGTAAGAAAGTAAGTAAACAAGTAAGAGAGTAAGTAAAGAAGAAAGTAAAGATCATGAG
* * *
25755399 ACTTGATGATAATTTTTGAGTATAATTATTTATGATAAATGTTGTTATTTATTTGCTTGTAAACT
129 ACTTGATGATAATTTATGAGCATAATTATTTATGATAAATGTTGCTATTTATTTGCTTGTAAACT
25755464 TA
194 TA
25755466 GTAAGCTTTA
Statistics
Matches: 188, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
197 19 0.10
198 162 0.86
199 7 0.04
ACGTcount: A:0.42, C:0.06, G:0.19, T:0.33
Consensus pattern (197 bp):
AATATCTCAGTTATCAGTTAAAAAAAAGTTTCAGCAAGGGAGGAGTAAGTTATAATCATGAGTTA
TTTAAGTAAGAAAGTAAGTAAACAAGTAAGAGAGTAAGTAAAGAAGAAAGTAAAGATCATGAGAC
TTGATGATAATTTATGAGCATAATTATTTATGATAAATGTTGCTATTTATTTGCTTGTAAACTTA
CT
Found at i:25765245 original size:16 final size:17
Alignment explanation
Indices: 25765210--25765247 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
25765200 TTATCTGAAT
*
25765210 TTTATCCAACACTTATA
1 TTTATCCAACACTAATA
*
25765227 TTTATCCAACTC-AATA
1 TTTATCCAACACTAATA
25765243 TTTAT
1 TTTAT
25765248 TTTCTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTATCCAACACTAATA
Found at i:25765291 original size:5 final size:5
Alignment explanation
Indices: 25765281--25765320 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
25765271 TTAAATAAAA
* *
25765281 AAATT AAATT AAATT AAATT AGATT AGATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT AAATT AAATT AAATT
25765321 CTTAATCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:25766166 original size:27 final size:25
Alignment explanation
Indices: 25766128--25766179 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
25766118 ACAAAAATAA
*
25766128 AATAAAATTTAAACTAAAAAGAAAAC
1 AATAAAAGTTAAACT-AAAAGAAAAC
* *
25766154 AATACAAAGTTAATCTAAGAGAAAAC
1 AATA-AAAGTTAAACTAAAAGAAAAC
25766180 CTAAACCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.63, C:0.10, G:0.08, T:0.19
Consensus pattern (25 bp):
AATAAAAGTTAAACTAAAAGAAAAC
Found at i:25769377 original size:17 final size:17
Alignment explanation
Indices: 25769355--25769395 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
25769345 AGCTCCGACA
25769355 AGCTTCCAACCCGAACG
1 AGCTTCCAACCCGAACG
25769372 AGCTTCCAACCCGAACG
1 AGCTTCCAACCCGAACG
25769389 AGCTTCC
1 AGCTTCC
25769396 GATTTACTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.27, C:0.41, G:0.17, T:0.15
Consensus pattern (17 bp):
AGCTTCCAACCCGAACG
Found at i:25769873 original size:25 final size:25
Alignment explanation
Indices: 25769840--25769998 Score: 160
Period size: 25 Copynumber: 6.4 Consensus size: 25
25769830 GTATGCTTAT
* *
25769840 ACGAACTGTGAATCAGTATGCTCTC
1 ACGAGCTGTAAATCAGTATGCTCTC
*
25769865 TCGAGCTGTAAAT-AGATATGCTCTC
1 ACGAGCTGTAAATCAG-TATGCTCTC
* * *
25769890 ACGAGCTGTAAAACGGTATACTCTC
1 ACGAGCTGTAAATCAGTATGCTCTC
* *
25769915 ACGAGCTATAAATCATTATGCTCTC
1 ACGAGCTGTAAATCAGTATGCTCTC
* * *
25769940 ACGAGCTATATATTAGTATGCTCTC
1 ACGAGCTGTAAATCAGTATGCTCTC
* *
25769965 ACGAGCTGTAAA-CTGGTAAGCTCTC
1 ACGAGCTGTAAATC-AGTATGCTCTC
*
25769990 ATGAGCTGT
1 ACGAGCTGT
25769999 GGTGTGTTTA
Statistics
Matches: 110, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
24 2 0.02
25 107 0.97
26 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (25 bp):
ACGAGCTGTAAATCAGTATGCTCTC
Found at i:25784458 original size:50 final size:51
Alignment explanation
Indices: 25784404--25784543 Score: 176
Period size: 50 Copynumber: 2.8 Consensus size: 51
25784394 GTGGAACCAA
*
25784404 TGGCAGTATATCTGCATATTAGTGGTGGCTTGTCCATAAAA-TCATATCAG
1 TGGCAGTATATCTGCATATTAGTGGTGGCTTGTCCACAAAAGTCATATCAG
* * **
25784454 TGGCAGTAAATCTG-ATAATAGTGGTGGCTTGTCCACAAAAGTGTTATCAG
1 TGGCAGTATATCTGCATATTAGTGGTGGCTTGTCCACAAAAGTCATATCAG
* * * * *
25784504 TGGCAGTTTATTTGCAAATAAGTGGTGGCTTTTCCACAAA
1 TGGCAGTATATCTGCATATTAGTGGTGGCTTGTCCACAAA
25784544 TGGTGTTATG
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
49 24 0.32
50 31 0.41
51 21 0.28
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (51 bp):
TGGCAGTATATCTGCATATTAGTGGTGGCTTGTCCACAAAAGTCATATCAG
Found at i:25784902 original size:31 final size:28
Alignment explanation
Indices: 25784849--25784911 Score: 90
Period size: 31 Copynumber: 2.1 Consensus size: 28
25784839 AAAAAAATGG
25784849 TTATGGACTTATATTTTAATTTGGGACTT
1 TTATGGACTTATATTTTAATTTGGGA-TT
*
25784878 TTATGGACTTTATTATTTTTATTTGGGATT
1 TTATGGAC-TTA-TATTTTAATTTGGGATT
25784908 TTAT
1 TTAT
25784912 TTTGCGGTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
29 8 0.26
30 9 0.29
31 14 0.45
ACGTcount: A:0.22, C:0.05, G:0.16, T:0.57
Consensus pattern (28 bp):
TTATGGACTTATATTTTAATTTGGGATT
Found at i:25787501 original size:21 final size:21
Alignment explanation
Indices: 25787468--25787515 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
25787458 ATTAATTTTA
* *
25787468 ATTATATCTAATTTATTTTGG
1 ATTAAATCCAATTTATTTTGG
25787489 ATTAAATCCAATTTATTTTGG
1 ATTAAATCCAATTTATTTTGG
25787510 ATTAAA
1 ATTAAA
25787516 ATAATAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.06, G:0.08, T:0.50
Consensus pattern (21 bp):
ATTAAATCCAATTTATTTTGG
Found at i:25794339 original size:50 final size:50
Alignment explanation
Indices: 25794285--25794507 Score: 288
Period size: 50 Copynumber: 4.5 Consensus size: 50
25794275 TATCCTAAAT
* * * * * *
25794285 ATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACTTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
* *
25794335 ATGGTCTTACGA-GGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTAC-ATGGGACTTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
* * *
25794385 ATGGTCTTACATGAGACCTT-TCACCTCGGTGTCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGA-CTTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
* * *
25794435 ATGGTCTTACATGGGACCTCTCATCTCGATGCCAAGGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACTTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
25794485 ATGGTCTTACATGGGACTTCTCA
1 ATGGTCTTACATGGGACTTCTCA
25794508 GAATCTCAAT
Statistics
Matches: 150, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
49 3 0.02
50 144 0.96
51 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACATGGGACTTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
Found at i:25796398 original size:41 final size:41
Alignment explanation
Indices: 25796339--25796418 Score: 151
Period size: 41 Copynumber: 2.0 Consensus size: 41
25796329 CATAAGGTGT
*
25796339 CATCTTCAAACTCGATTGGTAACTATTATTATAGGCAAAGC
1 CATCTTCAAACTCAATTGGTAACTATTATTATAGGCAAAGC
25796380 CATCTTCAAACTCAATTGGTAACTATTATTATAGGCAAA
1 CATCTTCAAACTCAATTGGTAACTATTATTATAGGCAAA
25796419 CTCTACCAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (41 bp):
CATCTTCAAACTCAATTGGTAACTATTATTATAGGCAAAGC
Found at i:25799640 original size:49 final size:50
Alignment explanation
Indices: 25799562--25799850 Score: 134
Period size: 50 Copynumber: 5.7 Consensus size: 50
25799552 GAATATAACA
* * * ** * * *
25799562 TGCCAAAGCTATATACCAGACATAATCTTACATGGGATGTT-TCTTGTA-C
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGAGA-GTTCTCATATAGC
* *
25799611 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGAGAGTTCTCATATAGC
* * ** * ** * * *
25799661 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGAGAGTTCTCATATAGC
* * * * * *** *
25799711 TGCCAACGTCATGTCCCAGACATGGTCTTACGTGGGACCACTCATCTCAG-
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGAGAGTTCTCATAT-AGC
* * * * * ** *
25799761 TGCCAACGCCATGTCCGAAACATGGTCTTACATGGGAACTCTCATAAACTCAATGA
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGAGAGTTCTCAT--A-T--A-GC
* *
25799817 TGCCAATGCCATGTCCTAGACATGGTCTTACATG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATG
25799851 GGATCCCTTT
Statistics
Matches: 194, Mismatches: 37, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
48 3 0.02
49 35 0.18
50 121 0.62
51 1 0.01
53 1 0.01
54 1 0.01
55 1 0.01
56 31 0.16
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGAGAGTTCTCATATAGC
Found at i:25799679 original size:50 final size:50
Alignment explanation
Indices: 25799611--25799848 Score: 185
Period size: 50 Copynumber: 4.6 Consensus size: 50
25799601 TTTCTTGTAC
* * * **
25799611 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATATAGG
* * * * *
25799661 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATATAGG
* * * * *
25799711 TGCCAACGTCATGTCCCAGACATGGTCTTAC-GTGGGACCACTCATCTCA-G
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAG-GAGACCTCTCATAT-AGG
* * * * *
25799761 TGCCAACGCCATGTCCGAAACATGGTCTTACATGG-GAACTCTCATAAACTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA-GGAGACCTCTCAT--A-T--A-GG
*
25799817 TGCCAATGCCATGTCCTAGACATGGTCTTACA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA
25799849 TGGGATCCCT
Statistics
Matches: 152, Mismatches: 26, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
49 1 0.01
50 118 0.78
51 1 0.01
52 1 0.01
53 1 0.01
54 1 0.01
56 29 0.19
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGAGACCTCTCATATAGG
Found at i:25799755 original size:100 final size:100
Alignment explanation
Indices: 25799624--25799850 Score: 222
Period size: 100 Copynumber: 2.2 Consensus size: 100
25799614 CAATGCCATA
* *** * * *
25799624 TCCCAGATATGGTCTTACATGAGAGTTCTCATAT-AGGTGCCCATGCCATGTCCCAGACATGGTC
1 TCCCAGACATGGTCTTACATGAGACCACTCATATCA-GTGCCAACGCCATGTCCCAAACATGGTC
* *
25799688 TTACGGGGGACCTCTCATCTTGGTGCCAACGTCATG
65 TTACAGGGGAACTCTCATCTTGGTGCCAACGTCATG
* * * *
25799724 TCCCAGACATGGTCTTACGTGGGACCACTCATCTCAGTGCCAACGCCATGTCCGAAACATGGTCT
1 TCCCAGACATGGTCTTACATGAGACCACTCATATCAGTGCCAACGCCATGTCCCAAACATGGTCT
* * * *
25799789 TACATGGGAACTCTCATAAACTCAATGATGCCAATGCCATG
66 TACAGGGGAACTCTCAT---CT---TGGTGCCAACGTCATG
*
25799830 TCCTAGACATGGTCTTACATG
1 TCCCAGACATGGTCTTACATG
25799851 GGATCCCTTT
Statistics
Matches: 101, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
100 66 0.65
101 1 0.01
103 2 0.02
106 32 0.32
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (100 bp):
TCCCAGACATGGTCTTACATGAGACCACTCATATCAGTGCCAACGCCATGTCCCAAACATGGTCT
TACAGGGGAACTCTCATCTTGGTGCCAACGTCATG
Found at i:25812570 original size:53 final size:53
Alignment explanation
Indices: 25812495--25812601 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
25812485 CATGTACTCG
*
25812495 AACGGATCAACGGTAATGCCTATAAAATTGATCTACCTGGTGAGTACAATGTA
1 AACGGATCAACGGCAATGCCTATAAAATTGATCTACCTGGTGAGTACAATGTA
*
25812548 AACGGATCAACGGCAATGCCTATAAAATTGATCTACCTGGTGTGTACAATGTA
1 AACGGATCAACGGCAATGCCTATAAAATTGATCTACCTGGTGAGTACAATGTA
25812601 A
1 A
25812602 GTTCTACTTT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (53 bp):
AACGGATCAACGGCAATGCCTATAAAATTGATCTACCTGGTGAGTACAATGTA
Found at i:25820358 original size:25 final size:25
Alignment explanation
Indices: 25820314--25820364 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
25820304 TACAATCTAT
25820314 CTATAGCAGTCTCAGTATATACTAC
1 CTATAGCAGTCTCAGTATATACTAC
*
25820339 CTATAGCAGTTTCAAG-ATATACTAC
1 CTATAGCAGTCTC-AGTATATACTAC
25820364 C
1 C
25820365 AAAAACAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (25 bp):
CTATAGCAGTCTCAGTATATACTAC
Found at i:25820373 original size:25 final size:25
Alignment explanation
Indices: 25820330--25820377 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
25820320 CAGTCTCAGT
* * *
25820330 ATATACTACCTATAGCAGTTTCAAG
1 ATATACTACCAAAAACAGTTTCAAG
25820355 ATATACTACCAAAAACAGTTTCA
1 ATATACTACCAAAAACAGTTTCA
25820378 GTTTAGACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (25 bp):
ATATACTACCAAAAACAGTTTCAAG
Found at i:25830385 original size:21 final size:21
Alignment explanation
Indices: 25830351--25830391 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
25830341 AAAATACAAG
*
25830351 TGAAAAAGAAGAAAATGAAAA
1 TGAAAAAGAAGAAAAGGAAAA
**
25830372 TGAAAAAGGCGAAAAGGAAA
1 TGAAAAAGAAGAAAAGGAAA
25830392 GCGAGAGAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.66, C:0.02, G:0.24, T:0.07
Consensus pattern (21 bp):
TGAAAAAGAAGAAAAGGAAAA
Found at i:25845072 original size:13 final size:13
Alignment explanation
Indices: 25845054--25845078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25845044 ATCTTGATTA
25845054 AAATCGTATTTTG
1 AAATCGTATTTTG
25845067 AAATCGTATTTT
1 AAATCGTATTTT
25845079 AATATTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (13 bp):
AAATCGTATTTTG
Found at i:25846825 original size:51 final size:51
Alignment explanation
Indices: 25846688--25846836 Score: 178
Period size: 50 Copynumber: 2.9 Consensus size: 51
25846678 CCGTGTAATT
* *
25846688 ATTATC-ATTCGATACATGTAGTAGCCTTCACATAGTACTACACACGTGATC
1 ATTATCTA-TCGATACATGTAGTAGCCTGCACATAGTACTACACACGTGACC
* * * * *
25846739 A--AACTTTCTGGTTCATGTAGTAGCCTGCACATAGTACTACACATGTGACC
1 ATTATCTATC-GATACATGTAGTAGCCTGCACATAGTACTACACACGTGACC
* *
25846789 ATTATCTATCGATACAAGTAGTAGCCTGCACTTAGTACTACACACGTG
1 ATTATCTATCGATACATGTAGTAGCCTGCACATAGTACTACACACGTG
25846837 TGTATAGGCA
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
49 4 0.05
50 37 0.46
51 34 0.43
52 5 0.06
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (51 bp):
ATTATCTATCGATACATGTAGTAGCCTGCACATAGTACTACACACGTGACC
Found at i:25854288 original size:22 final size:22
Alignment explanation
Indices: 25854262--25854307 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
25854252 ATTATGTGTA
25854262 TTAATTCATAATAT-AA-TTAATT
1 TTAATT-ATAAT-TCAATTTAATT
25854284 TTAATTATAATTCAATTTAATT
1 TTAATTATAATTCAATTTAATT
25854306 TT
1 TT
25854308 GTTTAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 1 0.05
21 7 0.32
22 14 0.64
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (22 bp):
TTAATTATAATTCAATTTAATT
Found at i:25854292 original size:16 final size:16
Alignment explanation
Indices: 25854273--25854305 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
25854263 TAATTCATAA
25854273 TATAATT-AATTTTAAT
1 TATAATTCAA-TTTAAT
25854289 TATAATTCAATTTAAT
1 TATAATTCAATTTAAT
25854305 T
1 T
25854306 TTGTTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TATAATTCAATTTAAT
Found at i:25869520 original size:30 final size:30
Alignment explanation
Indices: 25869486--25869735 Score: 129
Period size: 30 Copynumber: 8.4 Consensus size: 30
25869476 TTATCGGCCA
*
25869486 ATGAAAAGGGATAGCTTCGACTGTCAAATT
1 ATGAAAAGGGATAGCTTCGACTATCAAATT
* * * * *
25869516 ATGAAAAGGAAT-GGTGACGACCATC-AACT
1 ATGAAAAGGGATAGCT-TCGACTATCAAATT
* * **
25869545 ATGAAAAGGGATAG-TGACAACTATCAAAGC
1 ATGAAAAGGGATAGCT-TCGACTATCAAATT
* * * **
25869575 ATGAAAAGGAATAGCTTTGCCTATTGAATT
1 ATGAAAAGGGATAGCTTCGACTATCAAATT
* *
25869605 ATGAAATGGGATAGCTTCAACTATCAAATT
1 ATGAAAAGGGATAGCTTCGACTATCAAATT
* * *
25869635 ATGAAAAGGGA-CGGTGAT-GACCATCAACA--
1 ATGAAAAGGGATAGCT--TCGACTATCAA-ATT
* * * *
25869664 ATGAAAAGGGAT-GGTGACGACCATCAAAAT
1 ATGAAAAGGGATAGCT-TCGACTATCAAATT
* * * **
25869694 ATGAAAAGGGGTAGCTTCGGCTATCGAGCT
1 ATGAAAAGGGATAGCTTCGACTATCAAATT
25869724 ATGAAAAGGGAT
1 ATGAAAAGGGAT
25869736 GGTGACAATC
Statistics
Matches: 165, Mismatches: 43, Indels: 24
0.71 0.19 0.10
Matches are distributed among these distances:
28 1 0.01
29 50 0.30
30 109 0.66
31 5 0.03
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.22
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCGACTATCAAATT
Found at i:25869552 original size:29 final size:31
Alignment explanation
Indices: 25869515--25869588 Score: 91
Period size: 29 Copynumber: 2.5 Consensus size: 31
25869505 ACTGTCAAAT
* *
25869515 TATGAAAAGGAATGGTGACGACCATC-AA-C
1 TATGAAAAGGAATAGTGACAACCATCAAAGC
* *
25869544 TATGAAAAGGGATAGTGACAACTATCAAAGC
1 TATGAAAAGGAATAGTGACAACCATCAAAGC
25869575 -ATGAAAAGGAATAG
1 TATGAAAAGGAATAG
25869589 CTTTGCCTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
29 22 0.58
30 15 0.39
31 1 0.03
ACGTcount: A:0.46, C:0.12, G:0.24, T:0.18
Consensus pattern (31 bp):
TATGAAAAGGAATAGTGACAACCATCAAAGC
Found at i:25869670 original size:29 final size:30
Alignment explanation
Indices: 25869627--25869703 Score: 111
Period size: 29 Copynumber: 2.6 Consensus size: 30
25869617 AGCTTCAACT
* *
25869627 ATCAAATTATGAAAAGGGACGGTGATGACC
1 ATCAAAATATGAAAAGGGACGGTGACGACC
* *
25869657 ATCAACA-ATGAAAAGGGATGGTGACGACC
1 ATCAAAATATGAAAAGGGACGGTGACGACC
25869686 ATCAAAATATGAAAAGGG
1 ATCAAAATATGAAAAGGG
25869704 GTAGCTTCGG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
29 26 0.63
30 15 0.37
ACGTcount: A:0.44, C:0.13, G:0.26, T:0.17
Consensus pattern (30 bp):
ATCAAAATATGAAAAGGGACGGTGACGACC
Found at i:25869698 original size:119 final size:119
Alignment explanation
Indices: 25869486--25869735 Score: 329
Period size: 119 Copynumber: 2.1 Consensus size: 119
25869476 TTATCGGCCA
* * * *
25869486 ATGAAAAGGGATAGCTTCGACTGTCAAATTATGAAAAGGAATGGTGACGACCATCAACTATGAAA
1 ATGAAAAGGGATAGCTTCAACTATCAAATTATGAAAAGGAACGGTGACGACCATCAACAATGAAA
* *
25869551 AGGGATAGTGACAACTATCAAAGCATGAAAAGGAATAGCTTTGCCTATTGAATT
66 AGGGATAGTGACAACCATCAAAACATGAAAAGGAATAGCTTTGCCTATTGAATT
* * *
25869605 ATGAAATGGGATAGCTTCAACTATCAAATTATGAAAAGGGACGGTGATGACCATCAACAATGAAA
1 ATGAAAAGGGATAGCTTCAACTATCAAATTATGAAAAGGAACGGTGACGACCATCAACAATGAAA
* * * ** * * * **
25869670 AGGGATGGTGACGACCATCAAAATATGAAAAGGGGTAGCTTCGGCTATCGAGCT
66 AGGGATAGTGACAACCATCAAAACATGAAAAGGAATAGCTTTGCCTATTGAATT
25869724 ATGAAAAGGGAT
1 ATGAAAAGGGAT
25869736 GGTGACAATC
Statistics
Matches: 111, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
119 111 1.00
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.22
Consensus pattern (119 bp):
ATGAAAAGGGATAGCTTCAACTATCAAATTATGAAAAGGAACGGTGACGACCATCAACAATGAAA
AGGGATAGTGACAACCATCAAAACATGAAAAGGAATAGCTTTGCCTATTGAATT
Found at i:25896224 original size:22 final size:22
Alignment explanation
Indices: 25896189--25896248 Score: 93
Period size: 22 Copynumber: 2.7 Consensus size: 22
25896179 TACATGGCCA
* *
25896189 GTGTCACGACACCCTATTGCCT
1 GTGTCATGACACCCTAGTGCCT
*
25896211 GTGTCATGATACCCTAGTGCCT
1 GTGTCATGACACCCTAGTGCCT
25896233 GTGTCATGACACCCTA
1 GTGTCATGACACCCTA
25896249 AGAGCAGCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.20, C:0.32, G:0.20, T:0.28
Consensus pattern (22 bp):
GTGTCATGACACCCTAGTGCCT
Found at i:25901871 original size:18 final size:18
Alignment explanation
Indices: 25901831--25901872 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
25901821 CTCAACTTTT
25901831 CCTTTTTTTTCTATTCTC
1 CCTTTTTTTTCTATTCTC
* *
25901849 TCTTTTTTTTC-CTTCTC
1 CCTTTTTTTTCTATTCTC
25901866 ACCTTTT
1 -CCTTTT
25901873 CCCTCTTGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.05, C:0.29, G:0.00, T:0.67
Consensus pattern (18 bp):
CCTTTTTTTTCTATTCTC
Found at i:25906624 original size:9 final size:10
Alignment explanation
Indices: 25906606--25906644 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
25906596 AATTGTAGTT
25906606 TCGAAAAAAA
1 TCGAAAAAAA
25906616 TCGAAAAAAA
1 TCGAAAAAAA
*
25906626 TCGAAAAAAT
1 TCGAAAAAAA
25906636 TC-AAAAAAA
1 TCGAAAAAAA
25906645 AAGAATTTCG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
9 6 0.22
10 21 0.78
ACGTcount: A:0.69, C:0.10, G:0.08, T:0.13
Consensus pattern (10 bp):
TCGAAAAAAA
Found at i:25921396 original size:18 final size:18
Alignment explanation
Indices: 25921373--25921433 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
25921363 TTAATCATTT
25921373 TTAATTTATCTTAGTATG
1 TTAATTTATCTTAGTATG
* * ** * *
25921391 TTAATTAATTTGTCTTTTT
1 TTAATTTATCT-TAGTATG
25921410 TTAATTTATCTTAGTATG
1 TTAATTTATCTTAGTATG
25921428 TTAATT
1 TTAATT
25921434 AATTTATCTT
Statistics
Matches: 30, Mismatches: 12, Indels: 2
0.68 0.27 0.05
Matches are distributed among these distances:
18 18 0.60
19 12 0.40
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.61
Consensus pattern (18 bp):
TTAATTTATCTTAGTATG
Found at i:25921398 original size:22 final size:22
Alignment explanation
Indices: 25921373--25921443 Score: 84
Period size: 22 Copynumber: 3.5 Consensus size: 22
25921363 TTAATCATTT
25921373 TTAATTTATCTTAGTATGTTAA
1 TTAATTTATCTTAGTATGTTAA
*
25921395 TTAATTTGTC-T--T-T-TT--
1 TTAATTTATCTTAGTATGTTAA
25921410 TTAATTTATCTTAGTATGTTAA
1 TTAATTTATCTTAGTATGTTAA
25921432 TTAATTTATCTT
1 TTAATTTATCTT
25921444 GATATTATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
15 9 0.22
16 1 0.03
17 2 0.05
18 2 0.05
19 2 0.05
20 2 0.05
21 1 0.03
22 21 0.52
ACGTcount: A:0.27, C:0.06, G:0.07, T:0.61
Consensus pattern (22 bp):
TTAATTTATCTTAGTATGTTAA
Found at i:25921413 original size:37 final size:37
Alignment explanation
Indices: 25921370--25921443 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
25921360 TTTTTAATCA
*
25921370 TTTTTAATTTATCTTAGTATGTTAATTAATTTGTCTT
1 TTTTTAATTTATCTTAGTATGTTAATTAATTTATCTT
25921407 TTTTTAATTTATCTTAGTATGTTAATTAATTTATCTT
1 TTTTTAATTTATCTTAGTATGTTAATTAATTTATCTT
25921444 GATATTATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.62
Consensus pattern (37 bp):
TTTTTAATTTATCTTAGTATGTTAATTAATTTATCTT
Found at i:25924108 original size:19 final size:19
Alignment explanation
Indices: 25924084--25924121 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
25924074 TAAGTAGGGG
25924084 TGGACT-TCTTGATTGGGCT
1 TGGACTATCTT-ATTGGGCT
25924103 TGGACTCATCTTATTGGGC
1 TGGACT-ATCTTATTGGGC
25924122 CTTGCCTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.13, C:0.18, G:0.29, T:0.39
Consensus pattern (19 bp):
TGGACTATCTTATTGGGCT
Found at i:25931602 original size:430 final size:431
Alignment explanation
Indices: 25930802--25931656 Score: 1444
Period size: 430 Copynumber: 2.0 Consensus size: 431
25930792 TATGGTTTGT
* * *
25930802 CTTCTTGTTTGGGCATGGAATCATCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTGTTCCA
1 CTTCTTGATTCGGCATGGAATCATCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTATTCCA
* * * *
25930867 TCTTCTACCGAAATTGGTTCGTTGATGCTCGTAACGGAGATCCAATGCGCTTTGGCTGCAAGATT
66 TCTTCTACCGAAATTGGGTCGTTGAGGCTCGTAACGGAGATCCAATGCGATTTGGCTACAAGATT
25930932 TGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCC
131 TGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCC
*
25930997 AAACAGCAAGATTGGGCCAAGATTCGGTTTCTTGATTTCCTTGAAAACAAGAAAGTGAATCTTGA
196 AAACAGCAAGATTGGGCCAAGATTCAGTTTCTTGATTTCCTTGAAAACAAGAAAGTGAATCTTGA
* *
25931062 TTTTCTTTTTCTTTCATGTACGCATCCAAGGCCTTGCTAACAAACTCCTGAATGGTCCCATTTAG
261 TTTTCTCTTTCTCTCATGTACGCATCCAAGGCCTTGCTAACAAACTCCTGAATGGTCCCATTTAG
* * *
25931127 TTTGGAACGCATTTGTCGAGCCTTTGATCTTGTTATTGGGCCTTGTGGTAATTTGAGCCCATCAC
326 TTTGGAACACATTTGTCGAGCCTTTGATCTCGTTATTGGGCCTTGTGGTAAGTTGAGCCCATCAC
*
25931192 GTTCTTGGGCTTGGGTT-GGCCTTTGTGACTCGTATAAGGA
391 GTTCTTGAGCTTGGGTTGGGCCTTTGTGACTCGTATAAGGA
* *
25931232 CTTCTTGATTCGGCTTGGACTCATCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTATTCCA
1 CTTCTTGATTCGGCATGGAATCATCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTATTCCA
25931297 TC-TCTTACCGAAATTGGGTCGTTGAGGCTCGTAACGGAGATCCAATGCGATTTGGCTACAAGAT
66 TCTTC-TACCGAAATTGGGTCGTTGAGGCTCGTAACGGAGATCCAATGCGATTTGGCTACAAGAT
25931361 TTGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTC
130 TTGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTC
*
25931426 CAAACAGCAAGATTGGGCCAAGATTCAGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTG
195 CAAACAGCAAGATTGGGCCAAGATTCAGTTTCTTGATTTCCTTGAAAACAAGAAAGTGAATCTTG
* * * * * * *
25931491 ATTTTCTCTTTCTCTCGTTTATGCATCTAAGGCCTTGCTAACGAAGTCCTGGATGGTCCCATTTA
260 ATTTTCTCTTTCTCTCATGTACGCATCCAAGGCCTTGCTAACAAACTCCTGAATGGTCCCATTTA
* *
25931556 GTTTGGAACACATTTTTCGGGCCTTTGATCTCGTTATTGGGCCTTGTGGTAAGTTGAGCCCATCA
325 GTTTGGAACACATTTGTCGAGCCTTTGATCTCGTTATTGGGCCTTGTGGTAAGTTGAGCCCATCA
*
25931621 CGTTCTTGAGCTTTGGTTGGGCCTTTGTGACTCGTA
390 CGTTCTTGAGCTTGGGTTGGGCCTTTGTGACTCGTA
25931657 CCACAAGCAA
Statistics
Matches: 396, Mismatches: 27, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
429 2 0.01
430 377 0.95
431 17 0.04
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.36
Consensus pattern (431 bp):
CTTCTTGATTCGGCATGGAATCATCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTATTCCA
TCTTCTACCGAAATTGGGTCGTTGAGGCTCGTAACGGAGATCCAATGCGATTTGGCTACAAGATT
TGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCC
AAACAGCAAGATTGGGCCAAGATTCAGTTTCTTGATTTCCTTGAAAACAAGAAAGTGAATCTTGA
TTTTCTCTTTCTCTCATGTACGCATCCAAGGCCTTGCTAACAAACTCCTGAATGGTCCCATTTAG
TTTGGAACACATTTGTCGAGCCTTTGATCTCGTTATTGGGCCTTGTGGTAAGTTGAGCCCATCAC
GTTCTTGAGCTTGGGTTGGGCCTTTGTGACTCGTATAAGGA
Found at i:25947034 original size:28 final size:28
Alignment explanation
Indices: 25947002--25947134 Score: 167
Period size: 28 Copynumber: 4.8 Consensus size: 28
25946992 CTTTAGAGTA
* * *
25947002 TGCCACAAAGGATTACATTTTCTTAGTT
1 TGCCACAAAGGCTTCCATTTTCTTAGAT
*
25947030 TGCCACAAAGGCTTCCATTTTCTTAAAT
1 TGCCACAAAGGCTTCCATTTTCTTAGAT
* *
25947058 TGCCACAAATGCTTCCATTTTCATAGAT
1 TGCCACAAAGGCTTCCATTTTCTTAGAT
* *
25947086 CGCCACAAAGGCTTCCCTTTTCTTAGAT
1 TGCCACAAAGGCTTCCATTTTCTTAGAT
* * *
25947114 CGCTACAAAGGCTTCGATTTT
1 TGCCACAAAGGCTTCCATTTT
25947135 TTGGTGTGTT
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 91 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (28 bp):
TGCCACAAAGGCTTCCATTTTCTTAGAT
Found at i:25952051 original size:14 final size:14
Alignment explanation
Indices: 25952032--25952058 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25952022 TGCATCTCCC
25952032 CATGCATGAATCTA
1 CATGCATGAATCTA
25952046 CATGCATGAATCT
1 CATGCATGAATCT
25952059 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:25952682 original size:45 final size:46
Alignment explanation
Indices: 25952631--25952722 Score: 168
Period size: 45 Copynumber: 2.0 Consensus size: 46
25952621 TGTCCTCAAA
*
25952631 TCGCAATCTGCATCAAATAGAGACAAATC-AGAACGTTAAAGGTCG
1 TCGCAATCTGCATCAAATAGAGACAAATCAAAAACGTTAAAGGTCG
25952676 TCGCAATCTGCATCAAATAGAGACAAATCAAAAACGTTAAAGGTCG
1 TCGCAATCTGCATCAAATAGAGACAAATCAAAAACGTTAAAGGTCG
25952722 T
1 T
25952723 ACTAACATTG
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 29 0.64
46 16 0.36
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (46 bp):
TCGCAATCTGCATCAAATAGAGACAAATCAAAAACGTTAAAGGTCG
Found at i:25957700 original size:21 final size:22
Alignment explanation
Indices: 25957676--25957722 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
25957666 TTTCTTTCTT
*
25957676 TTTTAAATTTGAA-TTTTTTTA
1 TTTTAAATTTCAATTTTTTTTA
* *
25957697 TTTTTATTTTCAATTTTTTTTA
1 TTTTAAATTTCAATTTTTTTTA
25957719 TTTT
1 TTTT
25957723 GAACGACGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTAAATTTCAATTTTTTTTA
Found at i:25961463 original size:20 final size:20
Alignment explanation
Indices: 25961438--25961476 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
25961428 TACTTTCTTA
25961438 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
25961458 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
25961477 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:25961465 original size:12 final size:12
Alignment explanation
Indices: 25961427--25961477 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
25961417 ATCATGATCT
* *
25961427 TTACTTTCTTAT
1 TTACTTGCTTAC
*
25961439 TTACTTACTCT-C
1 TTACTTGCT-TAC
*
25961451 TTACTTGTTTAC
1 TTACTTGCTTAC
25961463 TTACTTGCTTAC
1 TTACTTGCTTAC
25961475 TTA
1 TTA
25961478 AATAACTCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
11 1 0.03
12 30 0.94
13 1 0.03
ACGTcount: A:0.18, C:0.22, G:0.04, T:0.57
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:25961796 original size:50 final size:51
Alignment explanation
Indices: 25961679--25961920 Score: 219
Period size: 50 Copynumber: 4.7 Consensus size: 51
25961669 GATAATAACA
* *
25961679 TGCCAAAGCCATGTCCCAGACATGATCTTACATGGGATGTT-TCATGTA-C--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCAT-TATCGG
* *
25961728 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCT-ATTATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATTATCGG
* ** *
25961778 TGCCCATGCCATGTCCCAGACATGGTCTTACA-GGAGACCTCTCA-TCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGG-GAGTTCTCATTATCGG
* * ** * **
25961828 TGCCAACGCCATGTCCCAGACATGGTCTTCCATGGGACCTCTCATAACCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATTA--TC---GG
*
25961884 TGCCAATTCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
25961921 TATCATCCCC
Statistics
Matches: 160, Mismatches: 20, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
47 2 0.01
48 6 0.04
49 36 0.22
50 77 0.48
51 3 0.02
53 2 0.01
56 34 0.21
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATTATCGG
Found at i:25991386 original size:21 final size:21
Alignment explanation
Indices: 25991347--25991386 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
25991337 TTCATTGGAG
*
25991347 GGGAGATTAGAGCCGTTTGAA
1 GGGAGATTAGAGCCATTTGAA
* *
25991368 GGGATATTAGAGCTATTTG
1 GGGAGATTAGAGCCATTTG
25991387 GATCTCGATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.07, G:0.35, T:0.30
Consensus pattern (21 bp):
GGGAGATTAGAGCCATTTGAA
Found at i:26002340 original size:19 final size:20
Alignment explanation
Indices: 26002308--26002345 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
26002298 CAAGCTGACT
26002308 TTAGCTCAATTTCAGCTCCC
1 TTAGCTCAATTTCAGCTCCC
26002328 TTAGCTC-ATTTCAGCTCC
1 TTAGCTCAATTTCAGCTCC
26002346 AATCAGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.18, C:0.34, G:0.11, T:0.37
Consensus pattern (20 bp):
TTAGCTCAATTTCAGCTCCC
Found at i:26002353 original size:20 final size:19
Alignment explanation
Indices: 26002310--26002355 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
26002300 AGCTGACTTT
* *
26002310 AGCTCAATTTCAGCTCCCTT
1 AGCTC-ATTTCAGCTCCATC
26002330 AGCTCATTTCAGCTCCAATC
1 AGCTCATTTCAGCTCC-ATC
26002350 AGCTCA
1 AGCTCA
26002356 CTTGAGCTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.24, C:0.35, G:0.11, T:0.30
Consensus pattern (19 bp):
AGCTCATTTCAGCTCCATC
Found at i:26006146 original size:41 final size:41
Alignment explanation
Indices: 26006114--26006231 Score: 164
Period size: 41 Copynumber: 2.9 Consensus size: 41
26006104 TGAATTATAG
* *
26006114 CAGGTTTTATGCCTAGCAGGCTTCATGCCGGTGTACCATAT
1 CAGGCTTTATGCCTAGCAGGCTTCATGCCGGTGTATCATAT
* *
26006155 CAGGCTTTATGCCTAGCAGGCTTCGTGCTGGTGTATCATAT
1 CAGGCTTTATGCCTAGCAGGCTTCATGCCGGTGTATCATAT
* * * *
26006196 CTGGCTTTGTGCCTAGAAGGCTTTATGCCGGTGTAT
1 CAGGCTTTATGCCTAGCAGGCTTCATGCCGGTGTAT
26006232 TTTAATAAGC
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.17, C:0.22, G:0.27, T:0.34
Consensus pattern (41 bp):
CAGGCTTTATGCCTAGCAGGCTTCATGCCGGTGTATCATAT
Found at i:26010032 original size:40 final size:41
Alignment explanation
Indices: 26009977--26010120 Score: 161
Period size: 40 Copynumber: 3.6 Consensus size: 41
26009967 TTGTACGGGA
26009977 TTTGCACTTCGGTGCCCCTGTTAT-CACTTTGGTGCCCCTG
1 TTTGCACTTCGGTGCCCCTGTTATACACTTTGGTGCCCCTG
* *
26010017 TTTGCACTTCGGTGCCCCTG-TATACACTTTGGTGTCCCTA
1 TTTGCACTTCGGTGCCCCTGTTATACACTTTGGTGCCCCTG
* * * * *
26010057 TTCGCACTACGATGCCCCTATT-TGCACATTT-GTGCCCCTG
1 TTTGCACTTCGGTGCCCCTGTTATACAC-TTTGGTGCCCCTG
* * *
26010097 TCTGCACCTCGGTGCTCCTGTTAT
1 TTTGCACTTCGGTGCCCCTGTTAT
26010121 GCATCTATGA
Statistics
Matches: 84, Mismatches: 16, Indels: 7
0.79 0.15 0.07
Matches are distributed among these distances:
39 3 0.04
40 76 0.90
41 5 0.06
ACGTcount: A:0.11, C:0.33, G:0.20, T:0.36
Consensus pattern (41 bp):
TTTGCACTTCGGTGCCCCTGTTATACACTTTGGTGCCCCTG
Found at i:26010064 original size:20 final size:19
Alignment explanation
Indices: 26009978--26010118 Score: 95
Period size: 20 Copynumber: 7.1 Consensus size: 19
26009968 TGTACGGGAT
*
26009978 TTGCACTTCGGTGCCCCTG
1 TTGCACTTTGGTGCCCCTG
*
26009997 TTATCACTTTGGTGCCCCTG
1 TT-GCACTTTGGTGCCCCTG
*
26010017 TTTGCACTTCGGTGCCCCTG
1 -TTGCACTTTGGTGCCCCTG
* * *
26010037 TATACACTTTGGTGTCCCTA
1 T-TGCACTTTGGTGCCCCTG
** * *
26010057 TTCGCACTACGATGCCCCTAT
1 TT-GCACTTTGGTGCCCCT-G
26010078 TTGCACATTT-GTGCCCCTG
1 TTGCAC-TTTGGTGCCCCTG
* * *
26010097 TCTGCACCTCGGTGCTCCTG
1 T-TGCACTTTGGTGCCCCTG
26010117 TT
1 TT
26010119 ATGCATCTAT
Statistics
Matches: 93, Mismatches: 21, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
19 7 0.08
20 81 0.87
21 5 0.05
ACGTcount: A:0.11, C:0.33, G:0.21, T:0.35
Consensus pattern (19 bp):
TTGCACTTTGGTGCCCCTG
Found at i:26011664 original size:69 final size:69
Alignment explanation
Indices: 26011537--26011800 Score: 291
Period size: 69 Copynumber: 3.8 Consensus size: 69
26011527 TTTGATGAAT
* * * *
26011537 TGTAAAATTAAGGTTCGCAGGCAAAAGAGC-CACGACCTCCAGAAGAGTTAGCGAGAGCAAAGCT
1 TGTAAAATTAAGGTTCGCAAGC-AAAGAGCTGA-GACCTCCAAAACAGTTAGCGAGAGCAAAGCT
*
26011601 CTCAGC
64 CCCAGC
* * *
26011607 TTTAAAATTAAGGTTCGCAAGCAAAGAGCTGAGACCTCCAAAACAATTAGTGAGAGCAAAGCTCC
1 TGTAAAATTAAGGTTCGCAAGCAAAGAGCTGAGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCC
26011672 CAGC
66 CAGC
* * * * * *
26011676 TGTAAAATTAAGGTTCGTACGCGAAGATCCGCA-ACCTCCAAAATAGTTAGCGAGAGCAAAGCTC
1 TGTAAAATTAAGGTTCGCAAGCAAAGAGCTG-AGACCTCCAAAACAGTTAGCGAGAGCAAAGCTC
26011740 CCAGC
65 CCAGC
** * * * *
26011745 TGTAAAACCAAGGTTCGCAAGCGAAGAG-TCGCGACCTCCAACACAGTTAGCAAGAG
1 TGTAAAATTAAGGTTCGCAAGCAAAGAGCT-GAGACCTCCAAAACAGTTAGCGAGAG
26011801 AACTAAGGTT
Statistics
Matches: 163, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
69 141 0.87
70 22 0.13
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (69 bp):
TGTAAAATTAAGGTTCGCAAGCAAAGAGCTGAGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCC
CAGC
Found at i:26016181 original size:14 final size:14
Alignment explanation
Indices: 26016162--26016188 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26016152 TACATTGGGC
26016162 AGATTCATGCATGT
1 AGATTCATGCATGT
26016176 AGATTCATGCATG
1 AGATTCATGCATG
26016189 GGGAGATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:26020829 original size:21 final size:20
Alignment explanation
Indices: 26020783--26020830 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
26020773 AATTATATGA
*
26020783 ATATATTAAATATTTAATTTT
1 ATAT-TTAAATATTTAATGTT
26020804 ATATTTAAATTATTT-ATGTT
1 ATATTTAAA-TATTTAATGTT
26020824 AGTATTT
1 A-TATTT
26020831 TACATCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (20 bp):
ATATTTAAATATTTAATGTT
Found at i:26021286 original size:26 final size:25
Alignment explanation
Indices: 26021220--26021326 Score: 134
Period size: 25 Copynumber: 4.4 Consensus size: 25
26021210 TCTTTTTAAA
26021220 AATTTAAATTTGTTTGTTTAAGAAT
1 AATTTAAATTTGTTTGTTTAAGAAT
*
26021245 AATTTAAATTTGTTTGTTTTAGAAT
1 AATTTAAATTTGTTTGTTTAAGAAT
*
26021270 AATTTAAACTTTATTTGTTTAAGAAT
1 AATTTAAA-TTTGTTTGTTTAAGAAT
* *
26021296 AATCT-AA--T-TCT-TTTAAGAAT
1 AATTTAAATTTGTTTGTTTAAGAAT
26021316 AATTTAAATTT
1 AATTTAAATTT
26021327 TAGTTTTTAA
Statistics
Matches: 72, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
20 13 0.18
21 4 0.06
22 1 0.01
23 1 0.01
25 34 0.47
26 19 0.26
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.51
Consensus pattern (25 bp):
AATTTAAATTTGTTTGTTTAAGAAT
Found at i:26021334 original size:25 final size:24
Alignment explanation
Indices: 26021220--26021341 Score: 119
Period size: 25 Copynumber: 5.0 Consensus size: 24
26021210 TCTTTTTAAA
26021220 AATTTAAATTTGTTTGTTTAAGAAT
1 AATTTAAATTTG-TTGTTTAAGAAT
*
26021245 AATTTAAATTTGTTTGTTTTAGAAT
1 AATTTAAATTTG-TTGTTTAAGAAT
*
26021270 AATTTAAACTTTATTTGTTTAAGAAT
1 AATTTAAA-TTT-GTTGTTTAAGAAT
* *
26021296 AATCT-AA-TT-CT-TTTAAGAAT
1 AATTTAAATTTGTTGTTTAAGAAT
26021316 AATTTAAATTTTAGTT-TTTAAGAAT
1 AATTTAAA-TTT-GTTGTTTAAGAAT
26021341 A
1 A
26021342 CCAATAAAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
20 13 0.16
21 3 0.04
23 4 0.05
25 45 0.54
26 18 0.22
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (24 bp):
AATTTAAATTTGTTGTTTAAGAAT
Found at i:26021951 original size:90 final size:88
Alignment explanation
Indices: 26021824--26022011 Score: 229
Period size: 90 Copynumber: 2.1 Consensus size: 88
26021814 GCTCTTGTTT
* * *
26021824 TTTTTCTTTACACTCATTTGGGTAGTTCAACTTTCAAAATA-CATCAAAAA-AGCCCTCAAACCT
1 TTTTTCTTTACACTCAATTGGGTACTTCAACTTTCAAAA-AGCATCAAAAAGA-CCCTCAAA-CA
* *
26021887 TTTTAAGAAAAAAGCAATTAAGCCCCTA
63 TTTT--CAAAAAAGCAACTAAGCCCCTA
* *
26021915 TTTTT-TTTGCACTCAATTGGGTACTTGAACTTTCAAAAAGCATCAAAAAGACCCTCAAACATTT
1 TTTTTCTTTACACTCAATTGGGTACTTCAACTTTCAAAAAGCATCAAAAAGACCCTCAAACATTT
*
26021979 TCAAAAAAGCAACTAAGCCCCTG
66 TCAAAAAAGCAACTAAGCCCCTA
*
26022002 TTTTTATTTA
1 TTTTTCTTTA
26022012 AAATTAGAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
87 24 0.28
88 3 0.04
89 6 0.07
90 46 0.54
91 6 0.07
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (88 bp):
TTTTTCTTTACACTCAATTGGGTACTTCAACTTTCAAAAAGCATCAAAAAGACCCTCAAACATTT
TCAAAAAAGCAACTAAGCCCCTA
Found at i:26022033 original size:10 final size:9
Alignment explanation
Indices: 26022020--26022078 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
26022010 TAAAATTAGA
26022020 AAAAAAT-T
1 AAAAAATAT
*
26022028 ATAAAAATCGT
1 A-AAAAAT-AT
26022039 AAAAAATAT
1 AAAAAATAT
*
26022048 AAAATATAT
1 AAAAAATAT
*
26022057 -AGAAATAT
1 AAAAAATAT
26022065 AAAAAATTAT
1 AAAAAA-TAT
26022075 AAAA
1 AAAA
26022079 TTTTATAAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
8 7 0.17
9 19 0.46
10 13 0.32
11 2 0.05
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.25
Consensus pattern (9 bp):
AAAAAATAT
Found at i:26022062 original size:27 final size:26
Alignment explanation
Indices: 26022022--26022080 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 26
26022012 AAATTAGAAA
*
26022022 AAAATTATAAAAATCGTAAAAAA-TAT
1 AAAATTATAAAAAT-ATAAAAAATTAT
*
26022048 AAAATATATAGAAATATAAAAAATTAT
1 AAAAT-TATAAAAATATAAAAAATTAT
26022075 AAAATT
1 AAAATT
26022081 TTATAAAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 13 0.45
27 16 0.55
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (26 bp):
AAAATTATAAAAATATAAAAAATTAT
Found at i:26022079 original size:17 final size:16
Alignment explanation
Indices: 26022041--26022079 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
26022031 AAAATCGTAA
*
26022041 AAAATATAAAATATAT
1 AAAATATAAAAAATAT
26022057 AGAAATATAAAAAATTAT
1 A-AAATATAAAAAA-TAT
26022075 AAAAT
1 AAAAT
26022080 TTTATAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 15 0.75
18 4 0.20
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (16 bp):
AAAATATAAAAAATAT
Found at i:26022312 original size:12 final size:13
Alignment explanation
Indices: 26022288--26022313 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26022278 TTTTATAAAA
26022288 TTTTACAATTTTT
1 TTTTACAATTTTT
26022301 TTTTACAATTTTT
1 TTTTACAATTTTT
26022314 ATAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTACAATTTTT
Found at i:26022386 original size:19 final size:19
Alignment explanation
Indices: 26022364--26022414 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
26022354 ATATTTTTAT
26022364 TAAAATTTAATAATTTTTC
1 TAAAATTTAATAATTTTTC
** *
26022383 TAAAATTTTTTATTTTTTC
1 TAAAATTTAATAATTTTTC
**
26022402 TAATTTTTAATAA
1 TAAAATTTAATAA
26022415 GAGCATTGGC
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (19 bp):
TAAAATTTAATAATTTTTC
Found at i:26022411 original size:38 final size:39
Alignment explanation
Indices: 26022341--26022414 Score: 98
Period size: 38 Copynumber: 1.9 Consensus size: 39
26022331 TTTCATAAAA
*
26022341 TTCTAAATTTTTTATATTTTTATTAAAATTTAATAATTT
1 TTCTAAATTTTTTATATTTTTACTAAAATTTAATAATTT
**
26022380 TTCTAAAATTTTTTAT-TTTTT-CTAATTTTTAATAA
1 TTCT-AAATTTTTTATATTTTTACTAAAATTTAATAA
26022415 GAGCATTGGC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
38 11 0.35
39 9 0.29
40 11 0.35
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (39 bp):
TTCTAAATTTTTTATATTTTTACTAAAATTTAATAATTT
Found at i:26036775 original size:32 final size:33
Alignment explanation
Indices: 26036739--26036805 Score: 82
Period size: 36 Copynumber: 2.0 Consensus size: 33
26036729 TTCTCCCTCT
26036739 GTTTTTCTCCC-TTCTCCATTTCTTTTAACATG
1 GTTTTTCTCCCATTCTCCATTTCTTTTAACATG
* *
26036771 GTTTTTTTCCCTATATTTTCCATTTCTTTTAACAT
1 GTTTTTCTCCC---ATTCTCCATTTCTTTTAACAT
26036806 AACTTTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 10 0.34
36 19 0.66
ACGTcount: A:0.15, C:0.24, G:0.04, T:0.57
Consensus pattern (33 bp):
GTTTTTCTCCCATTCTCCATTTCTTTTAACATG
Found at i:26065845 original size:25 final size:25
Alignment explanation
Indices: 26065811--26065869 Score: 118
Period size: 25 Copynumber: 2.4 Consensus size: 25
26065801 GAGCTAGAGG
26065811 AGGGATCAATTAGACATATGTAATT
1 AGGGATCAATTAGACATATGTAATT
26065836 AGGGATCAATTAGACATATGTAATT
1 AGGGATCAATTAGACATATGTAATT
26065861 AGGGATCAA
1 AGGGATCAA
26065870 ATGATTTGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (25 bp):
AGGGATCAATTAGACATATGTAATT
Found at i:26065882 original size:22 final size:24
Alignment explanation
Indices: 26065811--26065883 Score: 87
Period size: 25 Copynumber: 3.0 Consensus size: 24
26065801 GAGCTAGAGG
*
26065811 AGGGATCAATTAGACATATGTAATT
1 AGGGATCAAATAGA-ATATGTAATT
*
26065836 AGGGATCAATTAGACATATGTAATT
1 AGGGATCAAATAGA-ATATGTAATT
*
26065861 AGGGATCAAAT-G-ATTTGTAATT
1 AGGGATCAAATAGAATATGTAATT
26065883 A
1 A
26065884 AGTTATGACT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
22 10 0.22
24 1 0.02
25 35 0.76
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.33
Consensus pattern (24 bp):
AGGGATCAAATAGAATATGTAATT
Found at i:26067579 original size:22 final size:22
Alignment explanation
Indices: 26067553--26067598 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
26067543 CTATGCTTAA
26067553 TAACTTAATCAATTGAATCACT
1 TAACTTAATCAATTGAATCACT
26067575 TAACTTAATCAATTGAATCACT
1 TAACTTAATCAATTGAATCACT
26067597 TA
1 TA
26067599 GTATATAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.17, G:0.04, T:0.37
Consensus pattern (22 bp):
TAACTTAATCAATTGAATCACT
Found at i:26069083 original size:22 final size:21
Alignment explanation
Indices: 26069052--26069094 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
26069042 GCGATCATTT
26069052 GAAAAAGTAAAATTCAAGATA
1 GAAAAAGTAAAATTCAAGATA
* *
26069073 GAAAAACGTAAACTTTAAGATA
1 GAAAAA-GTAAAATTCAAGATA
26069095 ATATGTGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.58, C:0.07, G:0.14, T:0.21
Consensus pattern (21 bp):
GAAAAAGTAAAATTCAAGATA
Found at i:26074493 original size:20 final size:21
Alignment explanation
Indices: 26074446--26074493 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
26074436 GACGACACAA
*
26074446 GAAATAGAACATATAAGTTAT
1 GAAACAGAACATATAAGTTAT
** *
26074467 GCTACAGAACA-ATAATTTAT
1 GAAACAGAACATATAAGTTAT
26074487 GAAACAG
1 GAAACAG
26074494 GGCCACATGG
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (21 bp):
GAAACAGAACATATAAGTTAT
Found at i:26075394 original size:11 final size:11
Alignment explanation
Indices: 26075372--26075402 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
26075362 AAAAGCCAAA
26075372 AAGAAA-AAAG
1 AAGAAATAAAG
26075382 AAGAAATAAAG
1 AAGAAATAAAG
26075393 AAGAAATAAA
1 AAGAAATAAA
26075403 AGAGAGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.30
11 14 0.70
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.06
Consensus pattern (11 bp):
AAGAAATAAAG
Found at i:26075414 original size:11 final size:10
Alignment explanation
Indices: 26075372--26075414 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 10
26075362 AAAAGCCAAA
26075372 AAGAAAAAAG
1 AAGAAAAAAG
26075382 AAGAAATAAAG
1 AAGAAA-AAAG
26075393 AAGAAATAAAAG
1 AAG-AA-AAAAG
26075405 AGAGAAAAAA
1 A-AGAAAAAA
26075415 TGATGGAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 6 0.21
11 11 0.38
12 9 0.31
13 3 0.10
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.05
Consensus pattern (10 bp):
AAGAAAAAAG
Found at i:26076445 original size:38 final size:38
Alignment explanation
Indices: 26076393--26076623 Score: 286
Period size: 38 Copynumber: 6.1 Consensus size: 38
26076383 TGAATCATAA
* *
26076393 TGTTATTCACGCTTTGTGCCTAGCAGGCTTAGTGCCAG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
* *
26076431 TGTTATTTAAGCTTTGTGCCTAGCAGGCTTAGTACCGG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
* *
26076469 TGTTATTCAAGTTTTGTGCCTAGCAGGCTTAGTGCCTG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
* * *
26076507 TGTTATTCAGGCTTTGTGCCTAACAGGCTTAGT-CTCGA
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGC-CGG
* * *
26076545 TGTTATTCAGGCTTTGTTCCTAGCTA-GCTTAATGCCGG
1 TGTTATTCAAGCTTTGTGCCTAGC-AGGCTTAGTGCCGG
* * * *
26076583 TGTTATTCAAGCTTAGTGCCTAGTAGGCTTATTACCGG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
26076621 TGT
1 TGT
26076624 AATAAATGTT
Statistics
Matches: 166, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
37 2 0.01
38 162 0.98
39 2 0.01
ACGTcount: A:0.17, C:0.20, G:0.25, T:0.38
Consensus pattern (38 bp):
TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
Found at i:26080290 original size:20 final size:20
Alignment explanation
Indices: 26080264--26080312 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
26080254 TTAATATGCC
*
26080264 TTGTCTTAGCTGAATT-AAT
1 TTGTCTTAGCTCAATTAAAT
*
26080283 TGTGTCTTAGTTCAATTAAAT
1 T-TGTCTTAGCTCAATTAAAT
26080304 TTGTCTTAG
1 TTGTCTTAG
26080313 ATTATTACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 1 0.04
20 21 0.81
21 4 0.15
ACGTcount: A:0.24, C:0.10, G:0.16, T:0.49
Consensus pattern (20 bp):
TTGTCTTAGCTCAATTAAAT
Found at i:26081616 original size:21 final size:21
Alignment explanation
Indices: 26081592--26081631 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26081582 AGAAGTGTTA
26081592 AAAAAATTTTGAAAAAAAATG
1 AAAAAATTTTGAAAAAAAATG
** *
26081613 AAAAGTTTTTTAAAAAAAA
1 AAAAAATTTTGAAAAAAAA
26081632 CAAAAAAACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (21 bp):
AAAAAATTTTGAAAAAAAATG
Found at i:26081637 original size:21 final size:21
Alignment explanation
Indices: 26081598--26081637 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26081588 GTTAAAAAAA
**
26081598 TTTTGAAAAAAAATGAAAAGT
1 TTTTGAAAAAAAACAAAAAGT
*
26081619 TTTTTAAAAAAAACAAAAA
1 TTTTGAAAAAAAACAAAAA
26081638 AACAAAATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (21 bp):
TTTTGAAAAAAAACAAAAAGT
Found at i:26082201 original size:23 final size:23
Alignment explanation
Indices: 26082167--26082217 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
26082157 GACCTATAAG
*
26082167 TGTAATATCCTGAAAATTACTAC
1 TGTAATACCCTGAAAATTACTAC
26082190 TGTAATACCCTGAAAATTACTAC
1 TGTAATACCCTGAAAATTACTAC
*
26082213 AGTAA
1 TGTAA
26082218 GAAAGTAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (23 bp):
TGTAATACCCTGAAAATTACTAC
Found at i:26085254 original size:20 final size:20
Alignment explanation
Indices: 26085189--26085232 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
26085179 AAAATTTTAA
26085189 AAAATTAAAAAAAGTATTTT
1 AAAATTAAAAAAAGTATTTT
26085209 AAAATTAAAAAAAGTATTTT
1 AAAATTAAAAAAAGTATTTT
26085229 AAAA
1 AAAA
26085233 ATATTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32
Consensus pattern (20 bp):
AAAATTAAAAAAAGTATTTT
Found at i:26085254 original size:41 final size:41
Alignment explanation
Indices: 26085209--26085336 Score: 213
Period size: 41 Copynumber: 3.1 Consensus size: 41
26085199 AAAGTATTTT
26085209 AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAA
1 AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAA
26085250 AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTTAAAA
1 AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAA-TTAAAA
* * *
26085292 AAAAAT-AAAAAAGTATGTAAAAAATATTTTAAAATTAAAA
1 AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAA
26085332 AAAAT
1 AAAAT
26085337 AAATATATTT
Statistics
Matches: 82, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
40 10 0.12
41 61 0.74
42 11 0.13
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (41 bp):
AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAA
Found at i:26085275 original size:31 final size:30
Alignment explanation
Indices: 26085172--26085273 Score: 134
Period size: 31 Copynumber: 3.3 Consensus size: 30
26085162 GGCCCATTTT
**
26085172 TATTTTAAAAATTTTAAAAAATTAAAAAAAG
1 TATTTT-AAAATTAAAAAAAATTAAAAAAAG
**
26085203 TATTTTAAAATTAAAAAAAGTATTTTAAAAA-
1 TATTTTAAAATTAAAAAAA--ATTAAAAAAAG
26085234 TATTTTAAAATTAAAAAAAATTAAAAAAAG
1 TATTTTAAAATTAAAAAAAATTAAAAAAAG
26085264 TATTTTAAAA
1 TATTTTAAAA
26085274 ATATTTTAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
29 8 0.13
30 21 0.34
31 25 0.40
32 8 0.13
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (30 bp):
TATTTTAAAATTAAAAAAAATTAAAAAAAG
Found at i:26096751 original size:9 final size:9
Alignment explanation
Indices: 26096739--26096773 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
26096729 ATTATCAAAT
26096739 TATTAATTG
1 TATTAATTG
26096748 TATTAATTG
1 TATTAATTG
26096757 --TTAATTG
1 TATTAATTG
26096764 TATTAATTG
1 TATTAATTG
26096773 T
1 T
26096774 TGTAACAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.29
9 17 0.71
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:26096760 original size:16 final size:16
Alignment explanation
Indices: 26096736--26096774 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
26096726 AAAATTATCA
*
26096736 AATTATTAATTGTATT
1 AATTGTTAATTGTATT
26096752 AATTGTTAATTGTATT
1 AATTGTTAATTGTATT
26096768 AATTGTT
1 AATTGTT
26096775 GTAACAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.56
Consensus pattern (16 bp):
AATTGTTAATTGTATT
Found at i:26098757 original size:24 final size:25
Alignment explanation
Indices: 26098715--26098764 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
26098705 GTAAAGTATT
*
26098715 AAAATAAAAAACTATTATAT-TTTA
1 AAAATAAAAAAATATTATATATTTA
26098739 AAAATAAAAAAA-ATATATATATTTA
1 AAAATAAAAAAATAT-TATATATTTA
26098764 A
1 A
26098765 TATATTTTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 2 0.09
24 16 0.70
25 5 0.22
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (25 bp):
AAAATAAAAAAATATTATATATTTA
Found at i:26098764 original size:25 final size:24
Alignment explanation
Indices: 26098715--26098762 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
26098705 GTAAAGTATT
*
26098715 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAAATATTATATTTTA
26098739 AAAATAAAAAAAATATATATATTT
1 AAAAT-AAAAAAATAT-TATATTT
26098763 AATATATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.24
25 9 0.43
26 7 0.33
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
AAAATAAAAAAATATTATATTTTA
Found at i:26105107 original size:14 final size:13
Alignment explanation
Indices: 26105090--26105155 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 13
26105080 GTAAAAAAGG
26105090 AAAAAGAACAAGAA
1 AAAAAGAA-AAGAA
*
26105104 AAAAAG-AGAGAA
1 AAAAAGAAAAGAA
*
26105116 AAAGA-AAAAGAA
1 AAAAAGAAAAGAA
26105128 AAGAAAGAAAATTGAA
1 AA-AAAGAAAA--GAA
26105144 AAAAAGGAAAAG
1 AAAAA-GAAAAG
26105156 TTGAGAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
12 15 0.36
13 3 0.07
14 11 0.26
15 3 0.07
16 10 0.24
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.03
Consensus pattern (13 bp):
AAAAAGAAAAGAA
Found at i:26105120 original size:24 final size:23
Alignment explanation
Indices: 26105082--26105135 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
26105072 AAGAGACTGT
*
26105082 AAAAA-AGGAAAAAGAACAAGAA
1 AAAAAGAGGAAAAAGAAAAAGAA
26105104 AAAAAGAGAGAAAAAGAAAAAGAA
1 AAAAAGAG-GAAAAAGAAAAAGAA
26105128 AAGAAAGA
1 AA-AAAGA
26105136 AAATTGAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 5 0.18
23 2 0.07
24 16 0.57
25 5 0.18
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (23 bp):
AAAAAGAGGAAAAAGAAAAAGAA
Found at i:26105121 original size:6 final size:6
Alignment explanation
Indices: 26105083--26105133 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
26105073 AGAGACTGTA
* *
26105083 AAAAAGG AAAAAG AACAAG AAAAA- AAGAGAG AAAAAG AAAAAG -AAAAG
1 AAAAA-G AAAAAG AAAAAG AAAAAG AA-AAAG AAAAAG AAAAAG AAAAAG
26105131 AAA
1 AAA
26105134 GAAAATTGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
5 7 0.19
6 23 0.62
7 7 0.19
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:26105123 original size:15 final size:15
Alignment explanation
Indices: 26105089--26105138 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
26105079 TGTAAAAAAG
26105089 GAAAAAGAACAAGAAA
1 GAAAAAGAA-AAGAAA
*
26105105 -AAAAGAGAGAA-AAA
1 GAAAA-AGAAAAGAAA
26105119 GAAAAAGAAAAGAAA
1 GAAAAAGAAAAGAAA
26105134 GAAAA
1 GAAAA
26105139 TTGAAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
14 8 0.28
15 18 0.62
16 3 0.10
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (15 bp):
GAAAAAGAAAAGAAA
Done.