Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr03 ID=Chr03-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45765648
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 655849 characters in sequence are not A, C, G, or T
File 98 of 150
Found at i:30799570 original size:20 final size:19
Alignment explanation
Indices: 30799528--30799571 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
30799518 CTAGTTGTAG
* *
30799528 TTTTAGATTATTTTAGTGT
1 TTTTAGATTATTTTAATGC
*
30799547 TTTTATATTATTTTTAATGC
1 TTTTAGATTA-TTTTAATGC
30799567 TTTTA
1 TTTTA
30799572 AATAAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.66
Consensus pattern (19 bp):
TTTTAGATTATTTTAATGC
Found at i:30804215 original size:24 final size:26
Alignment explanation
Indices: 30804172--30804229 Score: 75
Period size: 24 Copynumber: 2.3 Consensus size: 26
30804162 GTATTACACC
*
30804172 CAAACCCAAACAGCCCAAAACT-AAA
1 CAAACCCAAACAGCACAAAACTAAAA
*
30804197 CAAACCC-AACAGCATAAAACTAAAAA
1 CAAACCCAAACAGCACAAAACT-AAAA
30804223 CAAACCC
1 CAAACCC
30804230 TAGCCCCCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 12 0.41
25 7 0.24
26 10 0.34
ACGTcount: A:0.57, C:0.34, G:0.03, T:0.05
Consensus pattern (26 bp):
CAAACCCAAACAGCACAAAACTAAAA
Found at i:30805416 original size:4 final size:4
Alignment explanation
Indices: 30805407--30805435 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
30805397 TTTTACTTAA
30805407 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
30805436 GTCCATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:30807357 original size:22 final size:22
Alignment explanation
Indices: 30807331--30807374 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
30807321 GAGACAGGAG
30807331 GAGAAAGTCTACATGTTAAACA
1 GAGAAAGTCTACATGTTAAACA
30807353 GAGAAAGTCTACATGTTAAACA
1 GAGAAAGTCTACATGTTAAACA
30807375 ATTCCTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.23
Consensus pattern (22 bp):
GAGAAAGTCTACATGTTAAACA
Found at i:30813065 original size:19 final size:18
Alignment explanation
Indices: 30813030--30813092 Score: 56
Period size: 20 Copynumber: 3.3 Consensus size: 18
30813020 AATTACAACA
*
30813030 AAAAATT-AAAGTAATTTT
1 AAAAATTCAAAAT-ATTTT
30813048 CAAAAATTCAAAATATTTAT
1 -AAAAATTCAAAATATTT-T
*
30813068 AAAAATTTCAAATATTTTTT
1 AAAAA-TTCAAA-ATATTTT
30813088 AAAAA
1 AAAAA
30813093 AAGTATAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
19 16 0.42
20 17 0.45
21 5 0.13
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.38
Consensus pattern (18 bp):
AAAAATTCAAAATATTTT
Found at i:30813090 original size:20 final size:19
Alignment explanation
Indices: 30813030--30813092 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
30813020 AATTACAACA
* *
30813030 AAAAATT-AAAGTAATTTTC
1 AAAAATTCAAAAT-ATTTTT
*
30813049 AAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTTT
30813068 AAAAATTTC-AAATATTTTTT
1 AAAAA-TTCAAAATA-TTTTT
30813088 AAAAA
1 AAAAA
30813093 AAGTATAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 21 0.57
20 16 0.43
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAAATTCAAAATATTTTT
Found at i:30820918 original size:106 final size:106
Alignment explanation
Indices: 30820728--30820934 Score: 369
Period size: 106 Copynumber: 2.0 Consensus size: 106
30820718 TCGACTATAA
* *
30820728 AAAGAGAGCGTCGAAAAAACTACATTCTTAGATTTGGACTTAAAATGGAATTTATGAGACATACT
1 AAAGAGAGCATCCAAAAAACTACATTCTTAGATTTGGACTTAAAATGGAATTTATGAGACATACT
*
30820793 AACCTCTTTTTTTACGATTCGTGTGTCCAAATCATAGATCG
66 AACCTCTTTTTGTACGATTCGTGTGTCCAAATCATAGATCG
*
30820834 AAAGAGAGCATCCAAACAACTACATTCTTAGATTTGGACTTAAAATGGAATTTATGAGACATACT
1 AAAGAGAGCATCCAAAAAACTACATTCTTAGATTTGGACTTAAAATGGAATTTATGAGACATACT
*
30820899 AACCTCTTTTTGTATGATTCGTGTGTCCAAATCATA
66 AACCTCTTTTTGTACGATTCGTGTGTCCAAATCATA
30820935 TATCTTCGAT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 96 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (106 bp):
AAAGAGAGCATCCAAAAAACTACATTCTTAGATTTGGACTTAAAATGGAATTTATGAGACATACT
AACCTCTTTTTGTACGATTCGTGTGTCCAAATCATAGATCG
Found at i:30847449 original size:5 final size:5
Alignment explanation
Indices: 30847441--30847465 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
30847431 TTCTTTTATT
30847441 ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA
30847466 TACTTAACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:30849599 original size:29 final size:29
Alignment explanation
Indices: 30849555--30849623 Score: 102
Period size: 29 Copynumber: 2.4 Consensus size: 29
30849545 GTTCACTCAG
* *
30849555 TTAACCGACCCAAACTACTATTAATCGAA
1 TTAACCGACCCAAACTACTATTAACCAAA
* *
30849584 TTAACTGACCCGAACTACTATTAACCAAA
1 TTAACCGACCCAAACTACTATTAACCAAA
30849613 TTAACCGACCC
1 TTAACCGACCC
30849624 TTTTAAACCC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.39, C:0.30, G:0.07, T:0.23
Consensus pattern (29 bp):
TTAACCGACCCAAACTACTATTAACCAAA
Found at i:30853996 original size:16 final size:16
Alignment explanation
Indices: 30853975--30854012 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
30853965 CTAAACTACT
30853975 ATAAAACAACCTAAAA
1 ATAAAACAACCTAAAA
* *
30853991 ATAAAACAATCTAATA
1 ATAAAACAACCTAAAA
30854007 ATAAAA
1 ATAAAA
30854013 TTAAAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.68, C:0.13, G:0.00, T:0.18
Consensus pattern (16 bp):
ATAAAACAACCTAAAA
Found at i:30854763 original size:24 final size:24
Alignment explanation
Indices: 30854736--30854785 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
30854726 ATACTAAAAG
30854736 GTATTATTAAACGAACCTAAACAT
1 GTATTATTAAACGAACCTAAACAT
*
30854760 GTATTATTAAATGAACCTAAACAT
1 GTATTATTAAACGAACCTAAACAT
30854784 GT
1 GT
30854786 CCTTAGTCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (24 bp):
GTATTATTAAACGAACCTAAACAT
Found at i:30855750 original size:18 final size:18
Alignment explanation
Indices: 30855727--30855761 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
30855717 GTAGGTTTCC
*
30855727 AAAAATGGAAATGGAAAT
1 AAAAATGAAAATGGAAAT
30855745 AAAAATGAAAATGGAAA
1 AAAAATGAAAATGGAAA
30855762 GTTGCAATCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.20, T:0.14
Consensus pattern (18 bp):
AAAAATGAAAATGGAAAT
Found at i:30855948 original size:26 final size:25
Alignment explanation
Indices: 30855926--30855974 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
30855916 GGCAAAATTG
30855926 TCAAAATTTTATAAATGGTAAAATCT
1 TCAAAATTTTATAAA-GGTAAAATCT
* * *
30855952 TTAAAATTTTGTCAAGGTAAAAT
1 TCAAAATTTTATAAAGGTAAAAT
30855975 AGGGATGAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (25 bp):
TCAAAATTTTATAAAGGTAAAATCT
Found at i:30856401 original size:35 final size:35
Alignment explanation
Indices: 30856362--30856435 Score: 130
Period size: 35 Copynumber: 2.1 Consensus size: 35
30856352 AGAACAACAA
*
30856362 TTTTACTGGTTTTTATTAAAAAAGAGAAATTTTCT
1 TTTTACTGGTTTCTATTAAAAAAGAGAAATTTTCT
*
30856397 TTTTACTGGTTTCTATTAAAGAAGAGAAATTTTCT
1 TTTTACTGGTTTCTATTAAAAAAGAGAAATTTTCT
30856432 TTTT
1 TTTT
30856436 CACCTCAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (35 bp):
TTTTACTGGTTTCTATTAAAAAAGAGAAATTTTCT
Found at i:30857756 original size:29 final size:29
Alignment explanation
Indices: 30857724--30857780 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
30857714 CTATTTATTG
* * **
30857724 TCCCGGCAGACTTTGTCCTGTGTTTACTA
1 TCCCGACAGACTTTATCCCATGTTTACTA
*
30857753 TCCCTACAGACTTTATCCCATGTTTACT
1 TCCCGACAGACTTTATCCCATGTTTACT
30857781 GTCCTAGCAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.18, C:0.30, G:0.14, T:0.39
Consensus pattern (29 bp):
TCCCGACAGACTTTATCCCATGTTTACTA
Found at i:30857784 original size:58 final size:58
Alignment explanation
Indices: 30857717--30857867 Score: 180
Period size: 58 Copynumber: 2.6 Consensus size: 58
30857707 TTATCTTCTA
* * * * *
30857717 TTTATTGTCCCGGCAGACTTTGTC-CTGTGTTTACTATCCCTA-CAGACTTTATCCCATG
1 TTTACTGTCCCAGCAAACTTTATCTC-GTGTTTACTAT-CCTAGCAAACTTTATCCCATG
* * * *
30857775 TTTACTGTCCTAGCAAACTTTATCTCGTGTTTACTGTCCTAGCAAACTTTATCTCGTG
1 TTTACTGTCCCAGCAAACTTTATCTCGTGTTTACTATCCTAGCAAACTTTATCCCATG
*
30857833 TTTACTGTCCTAGCAAACTTTATCTCGTGTTTACT
1 TTTACTGTCCCAGCAAACTTTATCTCGTGTTTACT
30857868 GTCTCTACGA
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
57 4 0.05
58 77 0.94
59 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.14, T:0.42
Consensus pattern (58 bp):
TTTACTGTCCCAGCAAACTTTATCTCGTGTTTACTATCCTAGCAAACTTTATCCCATG
Found at i:30857794 original size:29 final size:29
Alignment explanation
Indices: 30857743--30857870 Score: 204
Period size: 29 Copynumber: 4.4 Consensus size: 29
30857733 ACTTTGTCCT
* * *
30857743 GTGTTTACTATCCCTA-CAGACTTTATCCC
1 GTGTTTACTGT-CCTAGCAAACTTTATCTC
*
30857772 ATGTTTACTGTCCTAGCAAACTTTATCTC
1 GTGTTTACTGTCCTAGCAAACTTTATCTC
30857801 GTGTTTACTGTCCTAGCAAACTTTATCTC
1 GTGTTTACTGTCCTAGCAAACTTTATCTC
30857830 GTGTTTACTGTCCTAGCAAACTTTATCTC
1 GTGTTTACTGTCCTAGCAAACTTTATCTC
30857859 GTGTTTACTGTC
1 GTGTTTACTGTC
30857871 TCTACGAATT
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
28 4 0.04
29 89 0.96
ACGTcount: A:0.20, C:0.25, G:0.13, T:0.41
Consensus pattern (29 bp):
GTGTTTACTGTCCTAGCAAACTTTATCTC
Found at i:30869881 original size:2 final size:2
Alignment explanation
Indices: 30869874--30869907 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
30869864 GAAGTACCTC
*
30869874 CT CT CT CT CT CT TT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
30869908 ATGCATTTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:30875265 original size:45 final size:48
Alignment explanation
Indices: 30875213--30875314 Score: 120
Period size: 49 Copynumber: 2.2 Consensus size: 48
30875203 TCCATATAGA
* * *
30875213 ACTACACTTCTTTTA-TTT-TATT-TTAGAATAAAGTTTTTCAACATT
1 ACTACACTTCATCTATTTTATATTATTAGAATAAAGTGTTTCAACATT
* * *
30875258 ATTACACTTCATCTATTTTATATTGATTAGAATAAGGTGTTTCAACCTT
1 ACTACACTTCATCTATTTTATATT-ATTAGAATAAAGTGTTTCAACATT
30875307 ACTACACT
1 ACTACACT
30875315 CCTATTAGAA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
45 12 0.26
46 3 0.07
47 4 0.09
49 27 0.59
ACGTcount: A:0.31, C:0.16, G:0.07, T:0.46
Consensus pattern (48 bp):
ACTACACTTCATCTATTTTATATTATTAGAATAAAGTGTTTCAACATT
Found at i:30878501 original size:15 final size:15
Alignment explanation
Indices: 30878481--30878512 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
30878471 TTATTTCAAA
30878481 AGAAATAGTTTTGAC
1 AGAAATAGTTTTGAC
30878496 AGAAATAGTTTTGAC
1 AGAAATAGTTTTGAC
30878511 AG
1 AG
30878513 TTGTTTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (15 bp):
AGAAATAGTTTTGAC
Found at i:30880465 original size:14 final size:14
Alignment explanation
Indices: 30880423--30880469 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
30880413 AATAATTAAG
*
30880423 TAATTTATTCATTT
1 TAATTTATTCTTTT
30880437 TAAGTTT-TT-TTTT
1 TAA-TTTATTCTTTT
30880450 TAATTTATTCTTTT
1 TAATTTATTCTTTT
30880464 TAATTT
1 TAATTT
30880470 CAAAAGTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
12 3 0.10
13 8 0.28
14 15 0.52
15 3 0.10
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.70
Consensus pattern (14 bp):
TAATTTATTCTTTT
Found at i:30884301 original size:21 final size:21
Alignment explanation
Indices: 30884252--30884301 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
30884242 TGTTTACTTT
*
30884252 TTTAATTTAACTCGACTTGAA
1 TTTAATTTAACTCGACTTCAA
* *
30884273 TTTCATTTCACTCGA-TTCAA
1 TTTAATTTAACTCGACTTCAA
30884293 TTTGAATTT
1 TTT-AATTT
30884302 TTTTCAAATC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (21 bp):
TTTAATTTAACTCGACTTCAA
Found at i:30887205 original size:33 final size:33
Alignment explanation
Indices: 30887163--30887248 Score: 163
Period size: 33 Copynumber: 2.6 Consensus size: 33
30887153 CTGTTACGGT
*
30887163 GGAATCAGCACTTAGCAACCACCGATGATTTGG
1 GGAATCAGCAGTTAGCAACCACCGATGATTTGG
30887196 GGAATCAGCAGTTAGCAACCACCGATGATTTGG
1 GGAATCAGCAGTTAGCAACCACCGATGATTTGG
30887229 GGAATCAGCAGTTAGCAACC
1 GGAATCAGCAGTTAGCAACC
30887249 CCTTGGGGGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (33 bp):
GGAATCAGCAGTTAGCAACCACCGATGATTTGG
Found at i:30890348 original size:69 final size:69
Alignment explanation
Indices: 30890237--30890373 Score: 231
Period size: 69 Copynumber: 2.0 Consensus size: 69
30890227 TATGTTCACG
*
30890237 AATCATGTTTTAAGCGTATATTTAAGTTAGGGAAGCTTTATTCTATGCAAA-TCGTACTGTGTGG
1 AATCATGTTTTAAGCGTATATTTAAGTTAGGGAAGCTTTATTCTATACAAACT-GTACTGTGTGG
30890301 GATCA
65 GATCA
* *
30890306 AATCATGTTTTGAGTGTATATTTAAGTTAGGGAAGCTTTATTCTATACAAACTGTACTGTGTGGG
1 AATCATGTTTTAAGCGTATATTTAAGTTAGGGAAGCTTTATTCTATACAAACTGTACTGTGTGGG
30890371 ATC
66 ATC
30890374 TCATCCCTCG
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
69 63 0.98
70 1 0.02
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (69 bp):
AATCATGTTTTAAGCGTATATTTAAGTTAGGGAAGCTTTATTCTATACAAACTGTACTGTGTGGG
ATCA
Found at i:30903647 original size:20 final size:21
Alignment explanation
Indices: 30903606--30903647 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
30903596 ATGACAAAAA
30903606 AAATATAATATTTTTATGAAT
1 AAATATAATATTTTTATGAAT
*
30903627 AAATATATTATTTTTAT-AAT
1 AAATATAATATTTTTATGAAT
30903647 A
1 A
30903648 TATAGCATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
AAATATAATATTTTTATGAAT
Found at i:30907851 original size:21 final size:22
Alignment explanation
Indices: 30907798--30907858 Score: 72
Period size: 21 Copynumber: 2.8 Consensus size: 22
30907788 ATTCTAAAAA
* *
30907798 ATTAAAAAATCTTTAAAATATT
1 ATTAAAAATTATTTAAAATATT
*
30907820 ATT-AAATTTATTTAAAATA-T
1 ATTAAAAATTATTTAAAATATT
30907840 ATTAAAAATTATGTTAAAA
1 ATTAAAAATTAT-TTAAAA
30907859 ATTTTCAACA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 4 0.12
21 20 0.61
22 9 0.27
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
ATTAAAAATTATTTAAAATATT
Found at i:30909265 original size:21 final size:22
Alignment explanation
Indices: 30909230--30909277 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
30909220 GAAGCGAGTG
*
30909230 TCAATTTTGTTTTTTGCTTCAA
1 TCAAGTTTGTTTTTTGCTTCAA
*
30909252 TCAAGTTT-TTTTTTTCTTCAA
1 TCAAGTTTGTTTTTTGCTTCAA
30909273 TCAAG
1 TCAAG
30909278 CATGAGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.21, C:0.15, G:0.08, T:0.56
Consensus pattern (22 bp):
TCAAGTTTGTTTTTTGCTTCAA
Found at i:30909458 original size:20 final size:18
Alignment explanation
Indices: 30909433--30909483 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
30909423 TAATTTTTAA
30909433 TATTTTTAAGAATTTATATT
1 TATTTTTAAGAATTT-T-TT
*
30909453 TATTTTAAAG-ATTTTTT
1 TATTTTTAAGAATTTTTT
* *
30909470 AATTTTTTAGAATT
1 TATTTTTAAGAATT
30909484 ACTGTTAAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 9 0.35
18 4 0.15
19 4 0.15
20 9 0.35
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (18 bp):
TATTTTTAAGAATTTTTT
Found at i:30909477 original size:19 final size:19
Alignment explanation
Indices: 30909424--30909478 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
30909414 ATGTTAATAT
30909424 AATTTTTAATATTTTT-AAG
1 AATTTTTAAT-TTTTTAAAG
* *
30909443 AATTTATATTTATTTTAAAG
1 AATTTTTAATT-TTTTAAAG
*
30909463 ATTTTTTAATTTTTTA
1 AATTTTTAATTTTTTA
30909479 GAATTACTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
18 1 0.03
19 17 0.59
20 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (19 bp):
AATTTTTAATTTTTTAAAG
Found at i:30915989 original size:29 final size:29
Alignment explanation
Indices: 30915952--30916007 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
30915942 GGAAAAATAT
30915952 TTATAAAATTAAAAATA-TGTTATAAAAGC
1 TTATAAAATTAAAAATATTGTT-TAAAAGC
* *
30915981 TTATCAAATTAAAATTATTGTTTAAAA
1 TTATAAAATTAAAAATATTGTTTAAAA
30916008 ATATGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (29 bp):
TTATAAAATTAAAAATATTGTTTAAAAGC
Found at i:30919312 original size:6 final size:6
Alignment explanation
Indices: 30919301--30919371 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 6
30919291 TCTAAAACGT
* * *
30919301 TTTTTC TTTTTC TTTTTC -CTCTC -TTTTC -TTTTC TTTTAC ATTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC -TTTTTC
30919347 TTCTTTC TTTTGAT- TTTTTC TTTTT
1 TT-TTTC TTTT--TC TTTTTC TTTTT
30919372 GACTGTGTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
5 12 0.23
6 25 0.47
7 15 0.28
8 1 0.02
ACGTcount: A:0.04, C:0.18, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTTC
Found at i:30919370 original size:26 final size:27
Alignment explanation
Indices: 30919302--30919371 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 27
30919292 CTAAAACGTT
30919302 TTTTCTTTTTCTTTTTCCTCTCTTTTC
1 TTTTCTTTTTCTTTTTCCTCTCTTTTC
*
30919329 TTTTCTTTTACATTTTT-CT-TC-TTTC
1 TTTTCTTTTTC-TTTTTCCTCTCTTTTC
*
30919354 TTTTGATTTTTTCTTTTT
1 TTTT--CTTTTTCTTTTT
30919372 GACTGTGTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
25 8 0.22
26 7 0.19
27 17 0.46
28 5 0.14
ACGTcount: A:0.04, C:0.19, G:0.01, T:0.76
Consensus pattern (27 bp):
TTTTCTTTTTCTTTTTCCTCTCTTTTC
Found at i:30921316 original size:50 final size:50
Alignment explanation
Indices: 30921201--30921444 Score: 339
Period size: 50 Copynumber: 4.9 Consensus size: 50
30921191 GATCATAACA
* * * ** *
30921201 TGCCAAAGTCATGTCCCAAACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
*
30921252 TGCTC-ATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGG
1 TGC-CAACGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGG
*
30921302 TGCCAACGCCATGTCCCAGACATGATCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
30921352 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
** *
30921402 TGCCAACATCATGTCCCAGACATGGTCTTACATGGGATCTCTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC
30921445 TACCCAAATG
Statistics
Matches: 175, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
49 2 0.01
50 141 0.81
51 30 0.17
52 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:30924183 original size:16 final size:17
Alignment explanation
Indices: 30924158--30924193 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
30924148 CAACATTTAA
30924158 TTTCCATTAAATATT-T
1 TTTCCATTAAATATTCT
*
30924174 TTTCCTTTAAATATTCT
1 TTTCCATTAAATATTCT
30924191 TTT
1 TTT
30924194 TTAAAAAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.25, C:0.14, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTCCATTAAATATTCT
Found at i:30940792 original size:15 final size:15
Alignment explanation
Indices: 30940772--30940802 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
30940762 TAACTCGCAT
*
30940772 TACACATAGTTCGTA
1 TACACATAGCTCGTA
30940787 TACACATAGCTCGTA
1 TACACATAGCTCGTA
30940802 T
1 T
30940803 GCAACATGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (15 bp):
TACACATAGCTCGTA
Found at i:30942023 original size:21 final size:22
Alignment explanation
Indices: 30941990--30942032 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
30941980 TGCTTGACCA
30941990 ATCTTCAATACAT-TCTTATATT
1 ATCTTCAATACATATC-TATATT
30942012 ATCTTC-ATACATATCTATATT
1 ATCTTCAATACATATCTATATT
30942033 TAATATTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (22 bp):
ATCTTCAATACATATCTATATT
Found at i:30945347 original size:30 final size:31
Alignment explanation
Indices: 30945308--30945367 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
30945298 GGAGGTGGGA
*
30945308 TGGGAAGGGAATAAAAGTTTTAGGG-GAAAAG
1 TGGGAAGGGAATAAAAATTTT-GGGAGAAAAG
*
30945339 TGGG-AGGGAGTAAAAATTTTGGGAGAAAA
1 TGGGAAGGGAATAAAAATTTTGGGAGAAAA
30945368 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 3 0.12
30 19 0.73
31 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTGGGAGAAAAG
Found at i:30945514 original size:30 final size:31
Alignment explanation
Indices: 30945472--30945532 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 31
30945462 GGGTTGGAAG
* *
30945472 GGGAAGGGAGTAAAAGTTTTGGGGGGAAAGT
1 GGGAAGGGAGTAAAAGTTTTGAGGGAAAAGT
30945503 GGGAA-GGAGTAAAAGTTTTGAGGGAAAAGT
1 GGGAAGGGAGTAAAAGTTTTGAGGGAAAAGT
30945533 AAAAAAGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 23 0.82
31 5 0.18
ACGTcount: A:0.36, C:0.00, G:0.44, T:0.20
Consensus pattern (31 bp):
GGGAAGGGAGTAAAAGTTTTGAGGGAAAAGT
Found at i:30951038 original size:22 final size:22
Alignment explanation
Indices: 30951013--30951063 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
30951003 CTCATATTTC
* *
30951013 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTACTTACAAAATT
30951035 CTCTCAATTTACTTACAAAATT
1 CTCTCAATTTACTTACAAAATT
30951057 CTCTCAA
1 CTCTCAA
30951064 ATTCATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.39
Consensus pattern (22 bp):
CTCTCAATTTACTTACAAAATT
Found at i:30952251 original size:7 final size:7
Alignment explanation
Indices: 30952239--30952263 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
30952229 AGTCGATTGA
30952239 TATTTAG
1 TATTTAG
30952246 TATTTAG
1 TATTTAG
30952253 TATTTAG
1 TATTTAG
30952260 TATT
1 TATT
30952264 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:30952660 original size:19 final size:21
Alignment explanation
Indices: 30952622--30952660 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
30952612 CAGGAGTTAT
30952622 CATGCGTTTCAGAATACATGC
1 CATGCGTTTCAGAATACATGC
*
30952643 CATG-GTTT-AGAATCCATG
1 CATGCGTTTCAGAATACATG
30952661 GCAAGCCGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 4 0.24
21 4 0.24
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (21 bp):
CATGCGTTTCAGAATACATGC
Found at i:30953232 original size:21 final size:21
Alignment explanation
Indices: 30953208--30953257 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
30953198 CAGATGCCGA
*
30953208 ACCGGAAGAACCAGAATCC-CC
1 ACCGGAAGAACAAGAA-CCGCC
*
30953229 ACCGGAGGAACAAGAACCGCC
1 ACCGGAAGAACAAGAACCGCC
*
30953250 GCCGGAAG
1 ACCGGAAG
30953258 CTAGAGAAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.36, C:0.34, G:0.28, T:0.02
Consensus pattern (21 bp):
ACCGGAAGAACAAGAACCGCC
Found at i:30953412 original size:42 final size:43
Alignment explanation
Indices: 30953360--30953540 Score: 152
Period size: 44 Copynumber: 4.0 Consensus size: 43
30953350 TTATTTGTAC
*
30953360 AAATATTTTGA-ATATTTTGATATTATTTTATGTAAAAAAATAG
1 AAATATTTTGAGATATTTTGATATTATTTGATGT-AAAAAATAG
*
30953403 AAATA-TTTGAGTTATTTTGATATTATTTGATGTAAAAAATAG
1 AAATATTTTGAGATATTTTGATATTATTTGATGTAAAAAATAG
* * ** * *
30953445 AAGTTTATTTGATGTAATAAAATAGA-AGTTTATTTGATGTAATAAAATAA
1 AAATAT-TTTGA-G--AT-ATTTTGATA--TTATTTGATGTAA-AAAATAG
* * *
30953495 AAAAATTTCGAGTTATTTTGATATTATTTGATGTAATAAAATAG
1 AAATATTTTGAGATATTTTGATATTATTTGATGTAA-AAAATAG
30953539 AA
1 AA
30953541 GTTTATTTGA
Statistics
Matches: 109, Mismatches: 18, Indels: 21
0.74 0.12 0.14
Matches are distributed among these distances:
42 17 0.16
43 25 0.23
44 27 0.25
45 5 0.05
46 2 0.02
47 2 0.02
48 5 0.05
49 17 0.16
50 9 0.08
ACGTcount: A:0.44, C:0.01, G:0.13, T:0.43
Consensus pattern (43 bp):
AAATATTTTGAGATATTTTGATATTATTTGATGTAAAAAATAG
Found at i:30953496 original size:30 final size:25
Alignment explanation
Indices: 30953425--30953560 Score: 137
Period size: 25 Copynumber: 5.7 Consensus size: 25
30953415 TATTTTGATA
30953425 TTATTTGATGTAA-AAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
30953449 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
30953474 TTATTTGATGTAATAAAATA-AA-A
1 TTATTTGATGTAATAAAATAGAAGT
** ** *
30953497 AAATTTCGA-GT--T-ATTTTG-A-T
1 TTATTT-GATGTAATAAAATAGAAGT
30953517 ATTATTTGATGTAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
30953543 TTATTTGATGTAATAAAA
1 TTATTTGATGTAATAAAA
30953561 ACCCTAACCT
Statistics
Matches: 90, Mismatches: 12, Indels: 19
0.74 0.10 0.16
Matches are distributed among these distances:
20 5 0.06
21 7 0.08
23 7 0.08
24 20 0.22
25 50 0.56
26 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.14, T:0.41
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:30953521 original size:93 final size:93
Alignment explanation
Indices: 30953382--30953560 Score: 306
Period size: 94 Copynumber: 1.9 Consensus size: 93
30953372 TATTTTGATA
* * *
30953382 TTATTTTATGTAAAAAAATAGAAATATTTGAGTTATTTTGATATTATTTGATGTAA-AAAATAGA
1 TTATTTGATGTAAAAAAATAAAAAAATTTGAGTTATTTTGATATTATTTGATGTAATAAAATAGA
30953446 AGTTTATTTGATGTAATAAAATAGAAGT
66 AGTTTATTTGATGTAATAAAATAGAAGT
*
30953474 TTATTTGATGTAATAAAATAAAAAAATTTCGAGTTATTTTGATATTATTTGATGTAATAAAATAG
1 TTATTTGATGTAAAAAAATAAAAAAATTT-GAGTTATTTTGATATTATTTGATGTAATAAAATAG
30953539 AAGTTTATTTGATGTAATAAAA
65 AAGTTTATTTGATGTAATAAAA
30953561 ACCCTAACCT
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 25 0.31
93 27 0.33
94 29 0.36
ACGTcount: A:0.44, C:0.01, G:0.13, T:0.42
Consensus pattern (93 bp):
TTATTTGATGTAAAAAAATAAAAAAATTTGAGTTATTTTGATATTATTTGATGTAATAAAATAGA
AGTTTATTTGATGTAATAAAATAGAAGT
Found at i:30953638 original size:29 final size:29
Alignment explanation
Indices: 30953576--30953825 Score: 210
Period size: 29 Copynumber: 9.4 Consensus size: 29
30953566 AACCTAATTT
*
30953576 AACCCTAAACCCTAACCTAAATTAATT--A
1 AACCCT-AACCCTAACCTAATTTAATTAAA
30953604 AA----AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
* *
30953629 AACCCTAACCGTAACCTAATTTACTTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
* *
30953658 AACCCTAAACCT----TAA-CT--TTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
30953680 AACCCT-A-----ACCTAATTTAA-TACAA
1 AACCCTAACCCTAACCTAATTTAATTA-AA
*
30953703 AACCCTAACCTTAACCTAATTTAATT--A
1 AACCCTAACCCTAACCTAATTTAATTAAA
30953730 AA----AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
* * *
30953755 CACCCTAACCCTAATCTAAATTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
30953784 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
30953813 AACCCTAAACCCT
1 AACCCT-AACCCT
30953826 TAACTTAAAA
Statistics
Matches: 181, Mismatches: 14, Indels: 52
0.73 0.06 0.21
Matches are distributed among these distances:
20 3 0.02
21 2 0.01
22 13 0.07
23 46 0.25
24 2 0.01
25 8 0.04
27 3 0.02
28 2 0.01
29 95 0.52
30 7 0.04
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (29 bp):
AACCCTAACCCTAACCTAATTTAATTAAA
Found at i:30953657 original size:52 final size:51
Alignment explanation
Indices: 30953576--30953898 Score: 279
Period size: 52 Copynumber: 6.3 Consensus size: 51
30953566 AACCTAATTT
*
30953576 AACCCTAAACCCTAACCTAAATTAATTAAAAACCCTAACCTAATTTAATTAAA
1 AACCCT-AA-CCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAA
* *
30953629 AACCCTAACCGTAACCTAATTTACTTAAAAACCCTAAACCTTAA-CT--TTAAA
1 AACCCTAACC-TAACCTAATTTAATTAAAAACCCT-AACC-TAATTTAATTAAA
** ** * *
30953680 AACCCTAACCTAATTTAATACAA--AACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCTAACCTAATTTAATTAA---AAACCCTAACCTAATTTAATTAAA
** ** ** * *
30953732 AACCCTAACCTAATTTAA-TTAAACACCCTAACCCTAATCTAAATTAATTAAA
1 AACCCTAACCTAACCTAATTTAATTA--AAAACCCTAACCTAATTTAATTAAA
*
30953784 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACC---CTTAACTT-AA
1 AACCCTAA-CCTAACCTAATTTAATTAAAAACCCT-AACCTAATTTAA-TTAAA
30953834 AACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAA
1 AACCCTAACC-TAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAA
*
30953886 AACCCTAAACTAA
1 AACCCTAACCTAA
30953899 GTTAACAATG
Statistics
Matches: 221, Mismatches: 27, Indels: 46
0.75 0.09 0.16
Matches are distributed among these distances:
48 2 0.01
49 9 0.04
50 51 0.23
51 31 0.14
52 97 0.44
53 23 0.10
54 8 0.04
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (51 bp):
AACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAA
Found at i:30953789 original size:23 final size:23
Alignment explanation
Indices: 30953556--30953903 Score: 240
Period size: 23 Copynumber: 14.0 Consensus size: 23
30953546 TTTGATGTAA
*
30953556 TAAAAACCCTAACCTAATTTAAC
1 TAAAAACCCTAACCTAATTTAAT
*** *
30953579 CCTAAACCCTAACCTAAATTAAT
1 TAAAAACCCTAACCTAATTTAAT
30953602 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
30953625 TAAAAACCCTAACCGTAACCTAATTTACT
1 TAAAAA--C---CC-TAACCTAATTTAAT
*
30953654 TAAAAACCCTAAACCTTAA-CT--T
1 TAAAAACCCT-AACC-TAATTTAAT
30953676 TAAAAACCCTAACCTAATTTAA-
1 TAAAAACCCTAACCTAATTTAAT
30953698 TACAAAACCCTAACCTTAACCTAATTTAAT
1 TA-AAAA--C---CC-TAACCTAATTTAAT
30953728 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
30953751 TAAACACCCTAACCCTAATCTAAATTAAT
1 TAAAAACCCTAA-CCTAA--T---TTAAT
30953780 TAAAAACCCTAACCCTAACCTAATTTAAT
1 T-AAAA-----ACCCTAACCTAATTTAAT
*
30953809 TAAAAACCCTAAACCCTTAACTTAA-
1 TAAAAACCCT-AA-CC-TAATTTAAT
* *
30953834 -AACCCTAACCTTAACCTAATTTAAT
1 TAA---AAACCCTAACCTAATTTAAT
30953859 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* *
30953882 TAAAAACCCTAAACTAAGTTAA
1 TAAAAACCCTAACCTAATTTAA
30953904 CAATGTTACA
Statistics
Matches: 264, Mismatches: 22, Indels: 78
0.73 0.06 0.21
Matches are distributed among these distances:
20 3 0.01
21 5 0.02
22 13 0.05
23 116 0.44
24 25 0.09
25 9 0.03
26 12 0.05
27 7 0.03
28 8 0.03
29 48 0.18
30 5 0.02
32 1 0.00
34 5 0.02
35 7 0.03
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.28
Consensus pattern (23 bp):
TAAAAACCCTAACCTAATTTAAT
Found at i:30954045 original size:116 final size:116
Alignment explanation
Indices: 30953900--30954137 Score: 431
Period size: 116 Copynumber: 2.1 Consensus size: 116
30953890 CTAAACTAAG
* *
30953900 TTAACAATGTTACATTCACGTAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
1 TTAATAATGTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
30953965 TAATTTTACATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAC
66 TAATTTTACATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAC
*
30954016 TTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
1 TTAATAATGTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
* *
30954081 TAATTTTATATAATTTGATAATTTTACTAACTATTAATACAATTTTTTGAC
66 TAATTTTACATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAC
30954132 TTAATA
1 TTAATA
30954138 CAATTTATCA
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
116 117 1.00
ACGTcount: A:0.38, C:0.10, G:0.09, T:0.43
Consensus pattern (116 bp):
TTAATAATGTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
TAATTTTACATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAC
Found at i:30954154 original size:17 final size:18
Alignment explanation
Indices: 30954113--30954154 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
30954103 TTTACTAACT
* *
30954113 ATTAATACAATTTTTTGA
1 ATTAATACAATTTTATCA
*
30954131 CTTAATACAA-TTTATCA
1 ATTAATACAATTTTATCA
30954148 ATTAATA
1 ATTAATA
30954155 ATTTCACAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAATACAATTTTATCA
Found at i:30957436 original size:126 final size:125
Alignment explanation
Indices: 30957128--30957479 Score: 562
Period size: 126 Copynumber: 2.8 Consensus size: 125
30957118 CCCAAACATG
* * *
30957128 CTACTGTAGCAAAAGCGTGTCCATGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGACGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
30957193 TAGAAGTGATTTTATACTATTTGCTCAGAAACGTC-AAAAAAAATTATTTCTTACATGAC
66 TAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
* * *
30957252 CTACTGTAGCAAAAGCGCGTCCACGGGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCATGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGACGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
** * *
30957317 TAGAAACGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCCGTGAC
66 TAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAAAAAAA-AATTATTTCTTACATGAC
*
30957378 CTACTGTAGCAAAAGCGCGTCCACGAGGACGCGATTTCACAAATTCTTCTCAAATAGCATCCCGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGACGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
** *
30957443 TAGAAGTGATTTTATACTATTTTATCAGAAACATCAA
66 TAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAA
30957480 CTCGAAATTA
Statistics
Matches: 208, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
124 93 0.45
125 6 0.03
126 109 0.52
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGACGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
Found at i:30957639 original size:21 final size:21
Alignment explanation
Indices: 30957613--30957658 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
30957603 GGGAGCAGAC
30957613 GCTATACTCTCAACATCATCA
1 GCTATACTCTCAACATCATCA
30957634 GCTATACTCTCAACATCATCA
1 GCTATACTCTCAACATCATCA
30957655 GCTA
1 GCTA
30957659 CGGCTCGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.33, G:0.07, T:0.28
Consensus pattern (21 bp):
GCTATACTCTCAACATCATCA
Found at i:30958735 original size:41 final size:41
Alignment explanation
Indices: 30958678--30958782 Score: 183
Period size: 41 Copynumber: 2.6 Consensus size: 41
30958668 ACATATTCAT
*
30958678 CGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCAC
1 CGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCAC
*
30958719 CGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
1 CGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCAC
*
30958760 CGGCACTTAGCCTGCTAGACTTA
1 CGGCACTTAGCCTGCTAGGCTTA
30958783 AAGTCCGAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (41 bp):
CGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCAC
Found at i:30958801 original size:41 final size:41
Alignment explanation
Indices: 30958673--30958859 Score: 172
Period size: 41 Copynumber: 4.6 Consensus size: 41
30958663 ATTTAACATA
* * *
30958673 TTCATCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGACTTAAAGCCTGATTCAG
* **
30958714 ATCACCGGCACTTAGCCTGCTAGGTTTATAA-CCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGACTTA-AAGCCTGATTCAG
* *
30958755 ATCACCGGCACTTAGCCTGCTAGACTTAAAGTCC-GAATT-AT
1 TTCACCGGCACTTAGCCTGCTAGACTTAAAG-CCTG-ATTCAG
*
30958796 TTCACCGGC-CTTAAGCCTGCTAGACTTAAAGTCC-GAATT-AT
1 TTCACCGGCACTT-AGCCTGCTAGACTTAAAG-CCTG-ATTCAG
*
30958837 TTCACCGGC-CTTAAGCCAGCTAG
1 TTCACCGGCACTT-AGCCTGCTAG
30958860 GTTTTAAACC
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
40 5 0.04
41 121 0.92
42 6 0.05
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGCTAGACTTAAAGCCTGATTCAG
Found at i:30959101 original size:25 final size:25
Alignment explanation
Indices: 30959071--30959128 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
30959061 AACTTTACAT
30959071 ACCTAAATACACTTATTCGAACCTA
1 ACCTAAATACACTTATTCGAACCTA
30959096 ACCTAAATACACTTATTCGAACCTA
1 ACCTAAATACACTTATTCGAACCTA
30959121 A-CTAAATA
1 ACCTAAATA
30959129 TATATATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 7 0.21
25 26 0.79
ACGTcount: A:0.43, C:0.26, G:0.03, T:0.28
Consensus pattern (25 bp):
ACCTAAATACACTTATTCGAACCTA
Found at i:30959394 original size:2 final size:2
Alignment explanation
Indices: 30959387--30959414 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
30959377 AGTCATAAAC
30959387 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
30959415 TTAAATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:30972256 original size:69 final size:69
Alignment explanation
Indices: 30972177--30972613 Score: 445
Period size: 69 Copynumber: 6.4 Consensus size: 69
30972167 AGGGCGCGGT
* * *
30972177 TCTTCGCCTGCGAACCTTGATTTTACAGCTGAGAGCTTTACTCTCGCTAACTGTATTAGAGGTCA
1 TCTTCGCCTGCGAACCTTGATTTTACAACTGAGAGCTTTACTCTCGCTAACTGTGTTAGAGGTCG
*
30972242 CGGC
66 CGAC
* * *
30972246 TCTTCACCTGCGAACCTTGATTTTACAACT-AGGAGCTTTGCTCTCGTTAACTGTGTTAGAGGTC
1 TCTTCGCCTGCGAACCTTGATTTTACAACTGA-GAGCTTTACTCTCGCTAACTGTGTTAGAGGTC
*
30972310 GTGAC
65 GCGAC
* * * * * * *
30972315 TCTTTGCCTGCAAACCTTGATTTTACAACTGGGAGCTATATTCTCGCTAACTGTGTTGGAGGTTG
1 TCTTCGCCTGCGAACCTTGATTTTACAACTGAGAGCTTTACTCTCGCTAACTGTGTTAGAGGTCG
30972380 CGAC
66 CGAC
* ** * * * * * *
30972384 TCTTTGCCTGCG-ACCTTGATTTTACAGTTGGGAG-TTGTGCTTTTGCTAATTGTGTTGGAGGTC
1 TCTTCGCCTGCGAACCTTGATTTTACAACTGAGAGCTT-TACTCTCGCTAACTGTGTTAGAGGTC
** *
30972447 ATGGC
65 GCGAC
* * * * * *
30972452 TCTTCGTCT-CGAATCTTAATTTTACAACTGAGAGCTTTGCTCTCGCTAATTGTGTTGGAGGTCG
1 TCTTCGCCTGCGAACCTTGATTTTACAACTGAGAGCTTTACTCTCGCTAACTGTGTTAGAGGTCG
*
30972516 CGGC
66 CGAC
* * ** *
30972520 TCTTCACCTGTGAACCTTGATTTTACAACT-AGGAGCTTTACTCTTACTAACTGTGTTAGAGGTT
1 TCTTCGCCTGCGAACCTTGATTTTACAACTGA-GAGCTTTACTCTCGCTAACTGTGTTAGAGGTC
30972584 GCGAC
65 GCGAC
30972589 TCTTC-CCTTGCGAACCTTGATTTTA
1 TCTTCGCC-TGCGAACCTTGATTTTA
30972614 TAAATGACAA
Statistics
Matches: 304, Mismatches: 56, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
67 3 0.01
68 104 0.34
69 197 0.65
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (69 bp):
TCTTCGCCTGCGAACCTTGATTTTACAACTGAGAGCTTTACTCTCGCTAACTGTGTTAGAGGTCG
CGAC
Found at i:30972438 original size:68 final size:69
Alignment explanation
Indices: 30972128--30972613 Score: 419
Period size: 69 Copynumber: 7.1 Consensus size: 69
30972118 TGAATCTTAG
* * * * * ** ** *
30972128 TTTTACAGCTAGGAGCTTTGCTCTTGC-AATCTCTGTTGAAGGGCGCGGTTCTTCGCCTGCGAAC
1 TTTTACAACTGGGAGCTTTGCTCTCGCTAA-CTGTGTTGGAGGTTGCGACTCTTTGCCTGCGAAC
30972192 CTTGA
65 CTTGA
* * * * * ** * **
30972197 TTTTACAGCTGAGAGCTTTACTCTCGCTAACTGTATTAGAGGTCACGGCTCTTCACCTGCGAACC
1 TTTTACAACTGGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGTTGCGACTCTTTGCCTGCGAACC
30972262 TTGA
66 TTGA
* * * * * *
30972266 TTTTACAACTAGGAGCTTTGCTCTCGTTAACTGTGTTAGAGGTCGTGACTCTTTGCCTGCAAACC
1 TTTTACAACTGGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGTTGCGACTCTTTGCCTGCGAACC
30972331 TTGA
66 TTGA
* **
30972335 TTTTACAACTGGGAGCTATATTCTCGCTAACTGTGTTGGAGGTTGCGACTCTTTGCCTGCG-ACC
1 TTTTACAACTGGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGTTGCGACTCTTTGCCTGCGAACC
30972399 TTGA
66 TTGA
** * * * * *
30972403 TTTTACAGTTGGGAG-TTGTGCTTTTGCTAATTGTGTTGGAGGTCATG-G-CTCTTCGTCT-CGA
1 TTTTACAACTGGGAGCTT-TGCTCTCGCTAACTGTGTTGGAGGT--TGCGACTCTTTGCCTGCGA
* *
30972464 ATCTTAA
63 ACCTTGA
* * * * ** *
30972471 TTTTACAACTGAGAGCTTTGCTCTCGCTAATTGTGTTGGAGGTCGCGGCTCTTCACCTGTGAACC
1 TTTTACAACTGGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGTTGCGACTCTTTGCCTGCGAACC
30972536 TTGA
66 TTGA
* * ** * *
30972540 TTTTACAACTAGGAGCTTTACTCTTACTAACTGTGTTAGAGGTTGCGACTC-TTCCCTTGCGAAC
1 TTTTACAACTGGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGTTGCGACTCTTTGCC-TGCGAAC
30972604 CTTGA
65 CTTGA
30972609 TTTTA
1 TTTTA
30972614 TAAATGACAA
Statistics
Matches: 339, Mismatches: 68, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
66 1 0.00
67 4 0.01
68 99 0.29
69 231 0.68
70 4 0.01
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (69 bp):
TTTTACAACTGGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGTTGCGACTCTTTGCCTGCGAACC
TTGA
Found at i:30972515 original size:205 final size:207
Alignment explanation
Indices: 30972177--30972613 Score: 542
Period size: 205 Copynumber: 2.1 Consensus size: 207
30972167 AGGGCGCGGT
*
30972177 TCTTCGCCTGCGAACCTTGATTTTACAGCTGAGAGCTTTACTCTCGCTAACTGTATTAGAGGTCA
1 TCTTTGCCTGCGAACCTTGATTTTACAGCTGAGAGCTTTACTCTCGCTAACTGTATTAGAGGTCA
* *
30972242 CGGCTCTTCACCTGCGAACCTTGATTTTACAACTAGGAGCTTTGCTCTCGTTAACTGTGTTAGAG
66 CGGCTCTTCACCTGCGAACCTTAATTTTACAACTAGGAGCTTTGCTCTCGCTAACTGTGTTAGAG
* ** * * *
30972307 GTCGTGACTCTTTGCCTGCAAACCTTGATTTTACAACTGGGAGCTATATTCTCGCTAACTGTGTT
131 GTCGCGACTCTTCACCTGCAAACCTTGATTTTACAACTAGGAGCTATACTCTCACTAACTGTGTT
*
30972372 GGAGGTTGCGAC
196 AGAGGTTGCGAC
* * * * * * * *
30972384 TCTTTGCCTGCG-ACCTTGATTTTACAGTTGGGAG-TTGTGCTTTTGCTAATTGTGTTGGAGGTC
1 TCTTTGCCTGCGAACCTTGATTTTACAGCTGAGAGCTT-TACTCTCGCTAACTGTATTAGAGGTC
* ** * * *
30972447 ATGGCTCTTCGTCT-CGAATCTTAATTTTACAACT-GAGAGCTTTGCTCTCGCTAATTGTGTTGG
65 ACGGCTCTTCACCTGCGAACCTTAATTTTACAACTAG-GAGCTTTGCTCTCGCTAACTGTGTTAG
* ** * *
30972510 AGGTCGCGGCTCTTCACCTGTGAACCTTGATTTTACAACTAGGAGCTTTACTCTTACTAACTGTG
129 AGGTCGCGACTCTTCACCTGCAAACCTTGATTTTACAACTAGGAGCTATACTCTCACTAACTGTG
30972575 TTAGAGGTTGCGAC
194 TTAGAGGTTGCGAC
*
30972589 TC-TTCCCTTGCGAACCTTGATTTTA
1 TCTTTGCC-TGCGAACCTTGATTTTA
30972614 TAAATGACAA
Statistics
Matches: 196, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
204 5 0.03
205 117 0.60
206 63 0.32
207 11 0.06
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (207 bp):
TCTTTGCCTGCGAACCTTGATTTTACAGCTGAGAGCTTTACTCTCGCTAACTGTATTAGAGGTCA
CGGCTCTTCACCTGCGAACCTTAATTTTACAACTAGGAGCTTTGCTCTCGCTAACTGTGTTAGAG
GTCGCGACTCTTCACCTGCAAACCTTGATTTTACAACTAGGAGCTATACTCTCACTAACTGTGTT
AGAGGTTGCGAC
Found at i:30981995 original size:32 final size:31
Alignment explanation
Indices: 30981950--30982045 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
30981940 CTTAGATAAT
30981950 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
30981981 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
30982013 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
30982044 TT
1 TT
30982046 GTAATTTGCC
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:30984677 original size:44 final size:44
Alignment explanation
Indices: 30984608--30985256 Score: 250
Period size: 44 Copynumber: 14.1 Consensus size: 44
30984598 TAGATCGCAT
* * *
30984608 CAGAATGAAGCCAGAAATCTTATCTCTCTGAGATTACAGCGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
* * *
30984652 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
** * *
30984696 C-GAATT-AAAATA-AAGGATCTTATCTCTCTGA-AGTTACAGTGGAGTAG
1 CAG-ATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTACAG-CG-G-AG
* * *
30984743 ATCACATCAGATTGAAGCCAGAAATCCTATCTCCCCGAGATTACAGCGGAG
1 -------CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
* * * *
30984794 CAAATTGAAGCTAGTAATCATATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
** * *
30984838 CAGATT-AAAATA-AAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG
1 CAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTAC---AGCG--GA--G
* * *
30984889 CATCAGATTGAAGCCAGAAATCTTATCTCCCTAAGATTATAGCGGAG
1 ---CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
* * *
30984936 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
** * *
30984980 CAGATT-AAAATA-AAGGATCTTATCTCTCTGA-AGTTACAGTAGAGCAGATCGCAT
1 CAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTAC-----AGC-G---G-AG
* * * * *
30985034 CAGATTGAGGCCAGAAATCTTATCTCCTTGAGATTCCAGCAGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
** * * * * **
30985078 CAGATTGAAGCCCGTAATCCTATCTCCTTGAGATCACAGTAGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
* * ** **
30985122 CGGATTAAAG-TA-AAGGATCTTATCTTTCTGA-AGTTACAGTTGAG
1 CAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTACAGCGGAG
* * * * * *
30985166 TAGATCGCATC-AG--GTCTTATCTCCCTAAGATTACAGCGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
* * * *
30985207 CAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
*
30985251 CGGATT
1 CAGATT
30985257 AAAGTAAAGG
Statistics
Matches: 446, Mismatches: 100, Indels: 118
0.67 0.15 0.18
Matches are distributed among these distances:
41 27 0.06
42 7 0.02
43 17 0.04
44 282 0.63
45 2 0.00
46 1 0.00
47 6 0.01
49 9 0.02
50 1 0.00
51 6 0.01
52 1 0.00
53 2 0.00
54 67 0.15
55 12 0.03
56 6 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (44 bp):
CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
Found at i:30984717 original size:142 final size:142
Alignment explanation
Indices: 30984570--30985307 Score: 1074
Period size: 142 Copynumber: 5.3 Consensus size: 142
30984560 GAAATAGCGA
* * *
30984570 ATCTTATCTCTCTGAAGTTACATTAGAGTAGATCGCATCAGAATGAAGCCAGAAATCTTATCTCT
1 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCC
30984635 CTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGAA
66 CTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGAA
30984700 TTAAAATAAAGG
131 TTAAAATAAAGG
* * *
30984712 ATCTTATCTCTCTGAAGTTACAGTGGAGTAGATCACATCAGATTGAAGCCAGAAATCCTATCTCC
1 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCC
* * *
30984777 CCGAGATTACAGCGGAGCAAATTGAAGCTAGTAATCATATCTCCCTGAGATTACAGTGGAGC-AG
66 CTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGA-
30984841 ATTAAAATAAAGG
130 ATTAAAATAAAGG
30984854 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCC
1 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCC
* *
30984919 CTAAGATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGC-AG
66 CTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGA-
30984983 ATTAAAATAAAGG
130 ATTAAAATAAAGG
* *
30984996 ATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCAGATTGAGGCCAGAAATCTTATCTCC
1 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCC
* * * ** * * * *
30985061 TTGAGATTCCAGCAGAGCAGATTGAAGCCCGTAATCCTATCTCCTTGAGATCACAGTAGAGCGGA
66 CTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGAA
*
30985126 TTAAAGTAAAGG
131 TTAAAATAAAGG
* *
30985138 ATCTTATCTTTCTGAAGTTACAGTTGAGTAGATCGCATC-------AG---G---TCTTATCTCC
1 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCC
* * *
30985190 CTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGA
66 CTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGAA
*
30985255 TTAAAGTAAAGG
131 TTAAAATAAAGG
* *
30985267 ATCTTATCTTTCTGAAGTTACAGTTGAGTAGATCGCATCAG
1 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
30985308 GTTTTATCTC
Statistics
Matches: 549, Mismatches: 43, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
129 118 0.21
132 1 0.00
135 1 0.00
141 1 0.00
142 428 0.78
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (142 bp):
ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCC
CTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGAA
TTAAAATAAAGG
Found at i:30984831 original size:98 final size:97
Alignment explanation
Indices: 30984652--30984842 Score: 233
Period size: 98 Copynumber: 1.9 Consensus size: 97
30984642 TACAGCGGAG
* * * * * * *
30984652 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTT
1 CAGATTGAAGCCAGAAATCCTATCTCCCCGAGATTACAGCGGAGCAAATTAAAAT-AAGAATCAT
* *
30984717 ATCTCTCTGAAGTTACAGTGGAGTAGATCACAT
65 ATCTCCCTGAAGTTACAGTGGAGCAGATCACAT
**
30984750 CAGATTGAAGCCAGAAATCCTATCTCCCCGAGATTACAGCGGAGCAAATTGAAGCT-AGTAATCA
1 CAGATTGAAGCCAGAAATCCTATCTCCCCGAGATTACAGCGGAGCAAATT-AAAATAAG-AATCA
30984814 TATCTCCCTG-AGATTACAGTGGAGCAGAT
64 TATCTCCCTGAAG-TTACAGTGGAGCAGAT
30984843 TAAAATAAAG
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
97 4 0.05
98 72 0.91
99 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (97 bp):
CAGATTGAAGCCAGAAATCCTATCTCCCCGAGATTACAGCGGAGCAAATTAAAATAAGAATCATA
TCTCCCTGAAGTTACAGTGGAGCAGATCACAT
Found at i:30984973 original size:98 final size:97
Alignment explanation
Indices: 30984797--30984984 Score: 209
Period size: 98 Copynumber: 1.9 Consensus size: 97
30984787 AGCGGAGCAA
* * * * * *
30984797 ATTGAAGCTAGTAATCATATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATC
1 ATTGAAGCCAGAAATCATATCTCCCTAAGATTACAGCGGAGCAGATTAAAAT-AAGAATCCTATC
* *
30984862 TCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
65 TCCCTGAAGTTACAGTAGAGCAGATCGCATCAG
* * **
30984895 ATTGAAGCCAGAAATCTTATCTCCCTAAGATTATAGCGGAGCAGATTGAAGCT-AGTAATCCTAT
1 ATTGAAGCCAGAAATCATATCTCCCTAAGATTACAGCGGAGCAGATT-AAAATAAG-AATCCTAT
*
30984959 CTCCCTG-AGATTACAGTGGAGCAGAT
64 CTCCCTGAAG-TTACAGTAGAGCAGAT
30984985 TAAAATAAAG
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
97 4 0.05
98 67 0.91
99 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28
Consensus pattern (97 bp):
ATTGAAGCCAGAAATCATATCTCCCTAAGATTACAGCGGAGCAGATTAAAATAAGAATCCTATCT
CCCTGAAGTTACAGTAGAGCAGATCGCATCAG
Found at i:30985281 original size:129 final size:129
Alignment explanation
Indices: 30985051--30985330 Score: 479
Period size: 129 Copynumber: 2.2 Consensus size: 129
30985041 AGGCCAGAAA
* * * *
30985051 TCTTATCTCCTTGAGATTCCAGCAGAGCAGATTGAAGCCCGTAATCCTATCTCCTTGAGATCACA
1 TCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATCACA
30985116 GTAGAGCGGATTAAAGTAAAGGATCTTATCTTTCTGAAGTTACAGTTGAGTAGATCGCATCAGG
66 GTAGAGCGGATTAAAGTAAAGGATCTTATCTTTCTGAAGTTACAGTTGAGTAGATCGCATCAGG
* * *
30985180 TCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATCACA
*
30985245 GTGGAGCGGATTAAAGTAAAGGATCTTATCTTTCTGAAGTTACAGTTGAGTAGATCGCATCAGG
66 GTAGAGCGGATTAAAGTAAAGGATCTTATCTTTCTGAAGTTACAGTTGAGTAGATCGCATCAGG
*
30985309 TTTTATCTCCCTGAGATTACAG
1 TCTTATCTCCCTGAGATTACAG
30985331 TAGAATAGAC
Statistics
Matches: 141, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
129 141 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (129 bp):
TCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATCACA
GTAGAGCGGATTAAAGTAAAGGATCTTATCTTTCTGAAGTTACAGTTGAGTAGATCGCATCAGG
Found at i:30985288 original size:44 final size:45
Alignment explanation
Indices: 30985098--30985299 Score: 125
Period size: 44 Copynumber: 4.7 Consensus size: 45
30985088 CCCGTAATCC
* * * *
30985098 TATCTCCTTG-AGATCACAGTAGAGCGGATTAAAGTAAAGGATCT
1 TATCTCCCTGAAGATTACAGTGGAGCAGATTAAAGTAAAGGATCT
** * * *** *
30985142 TATCTTTCTGAAG-TTACAGTTGAGTAGATCGCA-T-CAGG-TCT
1 TATCTCCCTGAAGATTACAGTGGAGCAGATTAAAGTAAAGGATCT
* * ** * *
30985183 TATCTCCCT-AAGATTACAGCGGAGCAGATTGAAG-CCAGTAATCC
1 TATCTCCCTGAAGATTACAGTGGAGCAGATTAAAGTAAAG-GATCT
*
30985227 TATCTCCCTG-AGATTACAGTGGAGCGGATTAAAGTAAAGGATCT
1 TATCTCCCTGAAGATTACAGTGGAGCAGATTAAAGTAAAGGATCT
** * *
30985271 TATCTTTCTGAAG-TTACAGTTGAGTAGAT
1 TATCTCCCTGAAGATTACAGTGGAGCAGAT
30985300 CGCATCAGGT
Statistics
Matches: 117, Mismatches: 32, Indels: 18
0.70 0.19 0.11
Matches are distributed among these distances:
40 3 0.03
41 25 0.21
42 6 0.05
43 1 0.01
44 76 0.65
45 6 0.05
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (45 bp):
TATCTCCCTGAAGATTACAGTGGAGCAGATTAAAGTAAAGGATCT
Found at i:30992685 original size:17 final size:18
Alignment explanation
Indices: 30992663--30992698 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
30992653 AAACATATTT
*
30992663 ATTTATTA-AAAATTTTA
1 ATTTATTAGAAAATGTTA
30992680 ATTTATTAGAAAATGTTA
1 ATTTATTAGAAAATGTTA
30992698 A
1 A
30992699 ATATGAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (18 bp):
ATTTATTAGAAAATGTTA
Found at i:30998496 original size:90 final size:90
Alignment explanation
Indices: 30998245--30998498 Score: 269
Period size: 90 Copynumber: 2.8 Consensus size: 90
30998235 AACTACTATT
* * * * * * *
30998245 TAAAATGTTCGTATTATCTTTATACCCGTAAATAAATTTTAGTTCGCATTATTTATTTGTCGAAT
1 TAAAATGTTCGTATTATTTTTGTATCTGTAAATAAATTTTAGTTCGTATTATTTGTTGGTCGAAT
** *
30998310 TTTATATTTTCATATATCAGTTTTG
66 TTTATATTTTCATATATCAAATTTC
* * * * * * **
30998335 TAAAATATTTGTATTATTTGTGGATCTGTAAA-AATGTTTTAGTCCGTATTATTTGCCGGTCGAA
1 TAAAATGTTCGTATTATTTTTGTATCTGTAAATAA-ATTTTAGTTCGTATTATTTGTTGGTCGAA
30998399 TTTTATATTTTCATATATCAAATTTC
65 TTTTATATTTTCATATATCAAATTTC
* * * *
30998425 TAAAATGTTCGTATTATTTTTGTATATGTAAATAAAATTTA-TTTGTTATTATTTGTTGGTCAAA
1 TAAAATGTTCGTATTATTTTTGTATCTGTAAATAAATTTTAGTTCG-TATTATTTGTTGGTCGAA
*
30998489 TTATATATTT
65 TTTTATATTT
30998499 CCGTATATTA
Statistics
Matches: 130, Mismatches: 31, Indels: 6
0.78 0.19 0.04
Matches are distributed among these distances:
89 4 0.03
90 124 0.95
91 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.11, T:0.50
Consensus pattern (90 bp):
TAAAATGTTCGTATTATTTTTGTATCTGTAAATAAATTTTAGTTCGTATTATTTGTTGGTCGAAT
TTTATATTTTCATATATCAAATTTC
Found at i:31002638 original size:22 final size:22
Alignment explanation
Indices: 31002589--31002639 Score: 86
Period size: 22 Copynumber: 2.3 Consensus size: 22
31002579 CTCTCTAATC
31002589 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
31002611 -TGCTCAATTTCCTTCCAAAATT
1 CT-CTCAATTTCCTTCCAAAATT
31002633 CTCTCAA
1 CTCTCAA
31002640 ACCCATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 1 0.04
22 25 0.93
23 1 0.04
ACGTcount: A:0.27, C:0.31, G:0.02, T:0.39
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATT
Found at i:31002723 original size:51 final size:51
Alignment explanation
Indices: 31002613--31002712 Score: 191
Period size: 51 Copynumber: 2.0 Consensus size: 51
31002603 CCAAAATTTG
31002613 CTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTCCT
1 CTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTCCT
*
31002664 CTCAATTTCCTTCCAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
1 CTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTC
31002713 TCCTTAATTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.42
Consensus pattern (51 bp):
CTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTCCT
Found at i:31002751 original size:10 final size:10
Alignment explanation
Indices: 31002738--31002788 Score: 57
Period size: 10 Copynumber: 5.1 Consensus size: 10
31002728 TTGAAAATAA
31002738 TTTTAAATTT
1 TTTTAAATTT
*
31002748 TTTTATATTT
1 TTTTAAATTT
* **
31002758 TTTAAAATAA
1 TTTTAAATTT
31002768 TTTTAAATTT
1 TTTTAAATTT
*
31002778 TTTTATATTT
1 TTTTAAATTT
31002788 T
1 T
31002789 CATCAATGGC
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTAAATTT
Found at i:31002765 original size:30 final size:30
Alignment explanation
Indices: 31002724--31002788 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
31002714 CCTTAATTTC
31002724 ATTTTTGAAAATAATTTTAAATTTTTTTAT
1 ATTTTTGAAAATAATTTTAAATTTTTTTAT
*
31002754 ATTTTTTAAAATAATTTTAAATTTTTTTAT
1 ATTTTTGAAAATAATTTTAAATTTTTTTAT
31002784 ATTTT
1 ATTTT
31002789 CATCAATGGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (30 bp):
ATTTTTGAAAATAATTTTAAATTTTTTTAT
Found at i:31005036 original size:26 final size:25
Alignment explanation
Indices: 31004972--31005041 Score: 95
Period size: 25 Copynumber: 2.7 Consensus size: 25
31004962 TTTAAATTTA
*
31004972 TTATCTAATGTAATAAAATAGAAGT
1 TTATTTAATGTAATAAAATAGAAGT
*
31004997 TTATTTAATATAATAAAATAGAAGT
1 TTATTTAATGTAATAAAATAGAAGT
*
31005022 TCTATTTGATGTAATTAAAA
1 T-TATTTAATGTAA-TAAAA
31005042 ACCCTAACTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 24 0.62
26 10 0.26
27 5 0.13
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (25 bp):
TTATTTAATGTAATAAAATAGAAGT
Found at i:31005056 original size:18 final size:18
Alignment explanation
Indices: 31005033--31005216 Score: 220
Period size: 18 Copynumber: 10.3 Consensus size: 18
31005023 CTATTTGATG
31005033 TAATTAAAAACCCTAACT
1 TAATTAAAAACCCTAACT
*
31005051 TAATTAAAAACCCTAATT
1 TAATTAAAAACCCTAACT
31005069 TAATTAAAAACCCTAACT
1 TAATTAAAAACCCTAACT
31005087 TAATTAAAAACACC--A--
1 TAATTAAAAAC-CCTAACT
***
31005102 -AA-CCCAAA-CCTAACT
1 TAATTAAAAACCCTAACT
31005117 TAATTAAAAACCCTAACT
1 TAATTAAAAACCCTAACT
*
31005135 TAATTAAAAACCCTAATT
1 TAATTAAAAACCCTAACT
31005153 TAATTAAAAACCCTAACT
1 TAATTAAAAACCCTAACT
31005171 TAATTAAAAATCCTAGCCTAACT
1 TAATTAAAAA--C---CCTAACT
31005194 TAATTAAAAACCCTAACT
1 TAATTAAAAACCCTAACT
31005212 TAATT
1 TAATT
31005217 TTACCAACCA
Statistics
Matches: 143, Mismatches: 10, Indels: 26
0.80 0.06 0.15
Matches are distributed among these distances:
11 2 0.01
13 4 0.03
14 2 0.01
16 2 0.01
17 4 0.03
18 108 0.76
19 2 0.01
20 1 0.01
21 1 0.01
23 17 0.12
ACGTcount: A:0.49, C:0.22, G:0.01, T:0.28
Consensus pattern (18 bp):
TAATTAAAAACCCTAACT
Found at i:31005347 original size:56 final size:55
Alignment explanation
Indices: 31005212--31005375 Score: 199
Period size: 56 Copynumber: 3.0 Consensus size: 55
31005202 AACCCTAACT
* * * *
31005212 TAATTTTACCAACCATTAACACAATTGTTGGACTTAATAATTTAACATAATTTGA
1 TAATTTTACTAACCATTAACAAAATTTTTGGACTTAATAATTTTACATAATTTGA
** *
31005267 TAATTTTACCT-A-GTTTAATTAAAATTTTTTTGG-CTTAATAATTTTACATAATTTGA
1 TAATTTTA-CTAACCATTAA-CAAAA--TTTTTGGACTTAATAATTTTACATAATTTGA
*
31005323 TAATTTTACTAACCATTAACAAAATTTTGGGACTTAATAATTTTACATAATTT
1 TAATTTTACTAACCATTAACAAAATTTTTGGACTTAATAATTTTACATAATTT
31005376 TACATAATGT
Statistics
Matches: 91, Mismatches: 11, Indels: 14
0.78 0.09 0.12
Matches are distributed among these distances:
54 10 0.11
55 35 0.38
56 36 0.40
57 10 0.11
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.45
Consensus pattern (55 bp):
TAATTTTACTAACCATTAACAAAATTTTTGGACTTAATAATTTTACATAATTTGA
Found at i:31005374 original size:10 final size:10
Alignment explanation
Indices: 31005359--31005383 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
31005349 TTGGGACTTA
31005359 ATAATTTTAC
1 ATAATTTTAC
31005369 ATAATTTTAC
1 ATAATTTTAC
31005379 ATAAT
1 ATAAT
31005384 GTTAGATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:31008743 original size:123 final size:124
Alignment explanation
Indices: 31008444--31008786 Score: 582
Period size: 123 Copynumber: 2.8 Consensus size: 124
31008434 CCCAAACTTG
*
31008444 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTAG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
* **
31008509 TAGAAGCGATTTTCTACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAAAATCAAAAAAAATTATTTCTTACATGAC
*
31008568 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTCCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
*
31008633 TAGAGGCGATTTTATACTATTTGCTCAGAAAAATC-AAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAAAATCAAAAAAAATTATTTCTTACATGAC
* *
31008691 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCAATTTCATAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
*
31008756 TAGAAGTGATTTTATACTATTTGAC-CAGAAA
66 TAGAAGCGATTTTATACTATTTG-CTCAGAAA
31008787 CGTCAACTCG
Statistics
Matches: 207, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
123 112 0.54
124 95 0.46
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (124 bp):
CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAAGCGATTTTATACTATTTGCTCAGAAAAATCAAAAAAAATTATTTCTTACATGAC
Found at i:31011867 original size:27 final size:27
Alignment explanation
Indices: 31011790--31011872 Score: 71
Period size: 27 Copynumber: 3.0 Consensus size: 27
31011780 TTATAATTTA
*
31011790 TAATTTAAACTTTAATTAGTTATTAT-T
1 TAATTTAAACTTTAATTAATTATT-TCT
* *
31011817 TAA-TTAAAATCTACCTATTAAATTATTTCT
1 TAATTTAAACTTTA---ATT-AATTATTTCT
*
31011847 TAATTTAAACTTTAATTAATTTTTTC
1 TAATTTAAACTTTAATTAATTATTTC
31011873 CTTTTTATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
26 8 0.18
27 11 0.25
28 3 0.07
29 4 0.09
30 10 0.23
31 8 0.18
ACGTcount: A:0.37, C:0.08, G:0.01, T:0.53
Consensus pattern (27 bp):
TAATTTAAACTTTAATTAATTATTTCT
Found at i:31012017 original size:64 final size:63
Alignment explanation
Indices: 31011926--31012257 Score: 367
Period size: 64 Copynumber: 5.4 Consensus size: 63
31011916 TAAATTGATA
*
31011926 TTTTAATTAACATCTATCTATTCAATTAATTTTTAATTTAAACTTTAATTATTTACTTTTTAT
1 TTTTAATTAAAATCTATCTATTCAATTAATTTTTAATTTAAACTTTAATTATTTACTTTTTAT
* * * **
31011989 TTTGTAATTAAAATCTATATATTAAATT-ATTTCTTAATTTAAAATTTAATTA---A-TTTTCCC
1 TTT-TAATTAAAATCTATCTATTCAATTAATTT-TTAATTTAAACTTTAATTATTTACTTTT-TA
31012049 T
63 T
* * * *
31012050 TTTTCAATT-AAA---ATCTATTCAATT-GTTTTATTATTTATACTTTAA--ATTGA-----TA-
1 TTTT-AATTAAAATCTATCTATTCAATTAATTTT-TAATTTAAACTTTAATTATTTACTTTTTAT
*
31012102 TTTTAATTAAAATCTATCTATTCAATTAATTTTTAATTTAAACTTTAATCATTTACTTTTTATT
1 TTTTAATTAAAATCTATCTATTCAATTAATTTTTAATTTAAACTTTAATTATTTACTTTTTA-T
31012166 TTTTAATTAAAATCTATCTATTCAATTAATTTTTAATTTAAACTTTAATTATTTACTTTTTATT
1 TTTTAATTAAAATCTATCTATTCAATTAATTTTTAATTTAAACTTTAATTATTTACTTTTTA-T
*
31012230 TTTTAATTAAAATCTATCTATTAAATTA
1 TTTTAATTAAAATCTATCTATTCAATTA
31012258 TCTATTAAGA
Statistics
Matches: 227, Mismatches: 20, Indels: 43
0.78 0.07 0.15
Matches are distributed among these distances:
51 4 0.02
52 7 0.03
55 26 0.11
56 5 0.02
57 29 0.13
58 1 0.00
60 8 0.04
61 9 0.04
62 2 0.01
63 7 0.03
64 129 0.57
ACGTcount: A:0.36, C:0.08, G:0.01, T:0.55
Consensus pattern (63 bp):
TTTTAATTAAAATCTATCTATTCAATTAATTTTTAATTTAAACTTTAATTATTTACTTTTTAT
Found at i:31012063 original size:176 final size:174
Alignment explanation
Indices: 31011769--31012216 Score: 670
Period size: 176 Copynumber: 2.5 Consensus size: 174
31011759 TCTTTTTTTA
* * * *
31011769 ATTCAATTAATTTATAATTTATAA-TTTAA-ACTTTAATTAGTTATTATTTAATTAAAATCTACC
1 ATTCAATTAATTTTTAATTTA-AACTTTAATA-TTTACTT-TTTATT-TTTAATTAAAATCTATC
* *
31011832 TATTAAATTATTTCTTAATTTAAACTTTAATTAATTTTTTCCTTTTTATTTAAAATCTATTCAAT
62 TATTAAATTATTTCTTAATTTAAACTTTAATTAATTTTTCCCTTTTTAATTAAAATCTATTCAAT
* *
31011897 TGTTTCATTGTTTATACTTTAAATTGATATTTTAATTAACATCTATCT
127 TGTTTCATTATTTATACTTTAAATTGATATTTTAATTAAAATCTATCT
*
31011945 ATTCAATTAATTTTTAATTTAAACTTTAATTATTTACTTTTTATTTTGTAATTAAAATCTATATA
1 ATTCAATTAATTTTTAATTTAAACTTTAA-TATTTACTTTTTATTTT-TAATTAAAATCTATCTA
*
31012010 TTAAATTATTTCTTAATTTAAAATTTAATTAA-TTTTCCCTTTTTCAATTAAAATCTATTCAATT
64 TTAAATTATTTCTTAATTTAAACTTTAATTAATTTTTCCCTTTTT-AATTAAAATCTATTCAATT
*
31012074 GTTTTATTATTTATACTTTAAATTGATATTTTAATTAAAATCTATCT
128 GTTTCATTATTTATACTTTAAATTGATATTTTAATTAAAATCTATCT
31012121 ATTCAATTAATTTTTAATTTAAACTTTAATCATTTACTTTTTATTTTTTAATTAAAATCTATCTA
1 ATTCAATTAATTTTTAATTTAAACTTTAAT-ATTTACTTTTTA-TTTTTAATTAAAATCTATCTA
*
31012186 TTCAATTAATTT-TTAATTTAAACTTTAATTA
64 TTAAATT-ATTTCTTAATTTAAACTTTAATTA
31012217 TTTACTTTTT
Statistics
Matches: 250, Mismatches: 14, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
175 16 0.06
176 219 0.88
177 14 0.06
178 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.02, T:0.54
Consensus pattern (174 bp):
ATTCAATTAATTTTTAATTTAAACTTTAATATTTACTTTTTATTTTTAATTAAAATCTATCTATT
AAATTATTTCTTAATTTAAACTTTAATTAATTTTTCCCTTTTTAATTAAAATCTATTCAATTGTT
TCATTATTTATACTTTAAATTGATATTTTAATTAAAATCTATCT
Found at i:31017818 original size:10 final size:9
Alignment explanation
Indices: 31017800--31017825 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
31017790 ATTTGCTCCC
31017800 TTATTTTTT
1 TTATTTTTT
31017809 TTATTTTTT
1 TTATTTTTT
31017818 TTATTTTT
1 TTATTTTT
31017826 ATATGGATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTATTTTTT
Found at i:31018592 original size:13 final size:13
Alignment explanation
Indices: 31018574--31018601 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
31018564 TCAATCTTTT
31018574 AAGATTAGTTACC
1 AAGATTAGTTACC
31018587 AAGATTAGTTACC
1 AAGATTAGTTACC
31018600 AA
1 AA
31018602 ATATTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AAGATTAGTTACC
Found at i:31022306 original size:16 final size:15
Alignment explanation
Indices: 31022285--31022315 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
31022275 GCAGCCAGTA
31022285 TAATGTGTATTTTTTT
1 TAATGTGT-TTTTTTT
31022301 TAATGTGTTTTTTTT
1 TAATGTGTTTTTTTT
31022316 AATTTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.16, C:0.00, G:0.13, T:0.71
Consensus pattern (15 bp):
TAATGTGTTTTTTTT
Found at i:31025360 original size:21 final size:21
Alignment explanation
Indices: 31025315--31025390 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
31025305 ATCTTCAAGG
* *
31025315 ATATGTAATCTTAGACATG--
1 ATATGCAATCTTAGATATGAT
*
31025334 ATATGCAATCTTAGATGTGAT
1 ATATGCAATCTTAGATATGAT
31025355 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
31025376 ATATGTAATCTTAGA
1 ATATGCAATCTTAGA
31025391 AGATATGATT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
19 16 0.32
21 34 0.68
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:31025396 original size:40 final size:39
Alignment explanation
Indices: 31025315--31025396 Score: 94
Period size: 40 Copynumber: 2.1 Consensus size: 39
31025305 ATCTTCAAGG
* *
31025315 ATATGTAATCTTAGACATGATATGCAATCTTAGATGTGAT
1 ATATGCAATCTTAGACATGATATGCAATCTTAGA-GAGAT
* *
31025355 ATATGCAATCTTAGATATGATATATGTAATCTTAGA-AGAT
1 ATATGCAATCTTAGACATG--ATATGCAATCTTAGAGAGAT
31025395 AT
1 AT
31025397 GATTTTGTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
40 22 0.61
42 14 0.39
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (39 bp):
ATATGCAATCTTAGACATGATATGCAATCTTAGAGAGAT
Found at i:31025409 original size:23 final size:23
Alignment explanation
Indices: 31025315--31025416 Score: 87
Period size: 21 Copynumber: 4.8 Consensus size: 23
31025305 ATCTTCAAGG
*
31025315 ATATGTAATCTT--AGACATG--
1 ATATGTAATCTTAAAGATATGAT
* *
31025334 ATATGCAATCTT--AGATGTGAT
1 ATATGTAATCTTAAAGATATGAT
*
31025355 ATATGCAATCTT--AGATATGAT
1 ATATGTAATCTTAAAGATATGAT
31025376 ATATGTAATCTTAGAAGATATGAT
1 ATATGTAATCTTA-AAGATATGAT
*
31025400 -TTTGTAATCTTAAAGAT
1 ATATGTAATCTTAAAGAT
31025417 TTAATTTGTA
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
19 16 0.22
21 31 0.43
22 5 0.07
23 11 0.15
24 9 0.12
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (23 bp):
ATATGTAATCTTAAAGATATGAT
Found at i:31025423 original size:22 final size:23
Alignment explanation
Indices: 31025379--31025423 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
31025369 ATATGATATA
*
31025379 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
31025402 TGTAATCTTA-AAGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
31025424 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:31025426 original size:21 final size:23
Alignment explanation
Indices: 31025367--31025426 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
31025357 ATGCAATCTT
*
31025367 AGATATGATATATGTAATCTTAGA
1 AGATATGA-ATTTGTAATCTTAGA
*
31025391 AGATATGATTTTGTAATCTTA-A
1 AGATATGAATTTGTAATCTTAGA
*
31025413 AGAT-TTAATTTGTA
1 AGATATGAATTTGTA
31025427 GATACCCTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 8 0.25
22 5 0.16
23 11 0.34
24 8 0.25
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.43
Consensus pattern (23 bp):
AGATATGAATTTGTAATCTTAGA
Found at i:31025643 original size:23 final size:23
Alignment explanation
Indices: 31025599--31025643 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
31025589 TCTTATTTTG
* *
31025599 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
31025622 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
31025644 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:31025890 original size:16 final size:16
Alignment explanation
Indices: 31025869--31025904 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
31025859 ATCTTGTATC
31025869 ATTATTATTATTATTT
1 ATTATTATTATTATTT
*
31025885 ATTATTATTTTTATTT
1 ATTATTATTATTATTT
31025901 -TTAT
1 ATTAT
31025905 ATTCATGCGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
ATTATTATTATTATTT
Found at i:31026003 original size:23 final size:23
Alignment explanation
Indices: 31025941--31026000 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
31025931 TAATATATAT
** *
31025941 TGTTT-TATATATAGTATACGTA
1 TGTTTATATATATTTTATACATA
31025963 TGTTTATATATATTTTATACATA
1 TGTTTATATATATTTTATACATA
*
31025986 TGTTTTTAT-TATTTT
1 TGTTTATATATATTTT
31026001 TATTTTACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 11 0.33
23 22 0.67
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.60
Consensus pattern (23 bp):
TGTTTATATATATTTTATACATA
Found at i:31037454 original size:20 final size:19
Alignment explanation
Indices: 31037410--31037460 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
31037400 ATACATATTA
*
31037410 TCACTGTTCTTGATCTAAC
1 TCACTGTTCATGATCTAAC
31037429 TCCACTGTTCATGA-CTTAACC
1 T-CACTGTTCATGATC-TAA-C
*
31037450 TCACTATTCAT
1 TCACTGTTCAT
31037461 AGGATTGACA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 2 0.07
20 23 0.85
21 2 0.07
ACGTcount: A:0.24, C:0.29, G:0.08, T:0.39
Consensus pattern (19 bp):
TCACTGTTCATGATCTAAC
Found at i:31037620 original size:33 final size:33
Alignment explanation
Indices: 31037565--31037655 Score: 119
Period size: 33 Copynumber: 2.8 Consensus size: 33
31037555 TTGGGTGTAT
* * *
31037565 GCGAGCTGATACTGTGAGCTCCCTTCAACTCCT
1 GCGAGCCGATACAGTGAGCTCCCTTCAACTCCC
* * *
31037598 GCGGGTCGATATAGTGAGCTCCCTTCAACTCCC
1 GCGAGCCGATACAGTGAGCTCCCTTCAACTCCC
*
31037631 GCGAGCCGATACCGTGAGCTCCCTT
1 GCGAGCCGATACAGTGAGCTCCCTT
31037656 TTCTTCTACC
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.18, C:0.34, G:0.24, T:0.24
Consensus pattern (33 bp):
GCGAGCCGATACAGTGAGCTCCCTTCAACTCCC
Found at i:31039083 original size:29 final size:29
Alignment explanation
Indices: 31039039--31039105 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
31039029 GTCTTTGTTA
* * *
31039039 GACAATAGTTCGAGGTTGAATCTATGCTT
1 GACAATAGTTCGAGGTTAAATATATGCTC
** *
31039068 GACAATAGTTTTAGGTTAAATATGTGCTC
1 GACAATAGTTCGAGGTTAAATATATGCTC
31039097 GACAATAGT
1 GACAATAGT
31039106 GCATCTAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.34
Consensus pattern (29 bp):
GACAATAGTTCGAGGTTAAATATATGCTC
Found at i:31043243 original size:36 final size:36
Alignment explanation
Indices: 31043196--31043270 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
31043186 TTCTGGCAGT
31043196 GACGTTGATATGACGTATTAAGATATGATGTCTTAG
1 GACGTTGATATGACGTATTAAGATATGATGTCTTAG
31043232 GACGTTGATATGACGTATTAAGATATGATGTCTTAG
1 GACGTTGATATGACGTATTAAGATATGATGTCTTAG
31043268 GAC
1 GAC
31043271 AACTAGGTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.35
Consensus pattern (36 bp):
GACGTTGATATGACGTATTAAGATATGATGTCTTAG
Found at i:31043898 original size:20 final size:20
Alignment explanation
Indices: 31043873--31043910 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
31043863 AGTCTTTTCG
31043873 ATTCATTTCTACTTTGGACA
1 ATTCATTTCTACTTTGGACA
*
31043893 ATTCATTTCTGCTTTGGA
1 ATTCATTTCTACTTTGGA
31043911 TCGTTATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (20 bp):
ATTCATTTCTACTTTGGACA
Found at i:31046731 original size:39 final size:39
Alignment explanation
Indices: 31046674--31046867 Score: 239
Period size: 39 Copynumber: 4.9 Consensus size: 39
31046664 ATTTACATTG
* * *
31046674 TAATCACATTCACTTTTAAGCATATATCACATTA-TACATA
1 TAATCACA-TAACATTTAAGCATATATCACAATACT-CATA
* * * * *
31046714 TAATTACATAATATTTAAACATATAACACAATACACATA
1 TAATCACATAACATTTAAGCATATATCACAATACTCATA
* *
31046753 TAATTACATAACATTCAAGCATATATCACAATACTCATA
1 TAATCACATAACATTTAAGCATATATCACAATACTCATA
*
31046792 TAATCACATAA-AGTTCAAGCATATATCACAATACTCATA
1 TAATCACATAACA-TTTAAGCATATATCACAATACTCATA
*
31046831 TAATCACATAACATTTAAGCATATATCATAATACTCA
1 TAATCACATAACATTTAAGCATATATCACAATACTCA
31046868 AAAACATGTT
Statistics
Matches: 135, Mismatches: 16, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
39 126 0.93
40 8 0.06
ACGTcount: A:0.46, C:0.19, G:0.03, T:0.32
Consensus pattern (39 bp):
TAATCACATAACATTTAAGCATATATCACAATACTCATA
Found at i:31047401 original size:33 final size:33
Alignment explanation
Indices: 31047306--31047411 Score: 96
Period size: 33 Copynumber: 3.2 Consensus size: 33
31047296 CATTTGCACT
*
31047306 TTCACAACAGTTATCATAACCAC-ATATCACATG
1 TTCACAACAGTTATCATAACCACAAT-TCACATA
* * *
31047339 TT-ATAGCA-TCTA-C-TAAAGCACATAGTTCACATA
1 TTCACAACAGT-TATCAT-AACCACA-A-TTCACATA
31047372 TTCACAACAGTTATCATAACCACAATTCACATA
1 TTCACAACAGTTATCATAACCACAATTCACATA
31047405 TTCACAA
1 TTCACAA
31047412 ACACTTAAGC
Statistics
Matches: 57, Mismatches: 7, Indels: 18
0.70 0.09 0.22
Matches are distributed among these distances:
30 1 0.02
31 7 0.12
32 6 0.11
33 26 0.46
34 8 0.14
35 8 0.14
36 1 0.02
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (33 bp):
TTCACAACAGTTATCATAACCACAATTCACATA
Found at i:31051855 original size:19 final size:20
Alignment explanation
Indices: 31051833--31051874 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
31051823 ATGGTATTGA
*
31051833 TACC-AAAGGAAAGTATAGG
1 TACCTAAAGAAAAGTATAGG
*
31051852 TACCTAAAGAAAAGTATTGG
1 TACCTAAAGAAAAGTATAGG
31051872 TAC
1 TAC
31051875 TTCAAACCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.21
Consensus pattern (20 bp):
TACCTAAAGAAAAGTATAGG
Found at i:31056809 original size:23 final size:23
Alignment explanation
Indices: 31056783--31056857 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
31056773 ATAAGTGCAA
*
31056783 CACTGATATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
31056806 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
* * *
31056829 CACTAAAACGTAGCCGGAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
31056852 CACTGA
1 CACTGA
31056858 TCAATAACAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.17
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:31057517 original size:2 final size:2
Alignment explanation
Indices: 31057505--31057554 Score: 91
Period size: 2 Copynumber: 24.5 Consensus size: 2
31057495 NNNTAGTTAG
31057505 TA TA GTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
31057548 TA TA TA T
1 TA TA TA T
31057555 TATGTCACAA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 45 0.96
3 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:31067435 original size:9 final size:10
Alignment explanation
Indices: 31067406--31067450 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
31067396 TTTACATACA
31067406 TAATAAATA-
1 TAATAAATAT
*
31067415 TAA-ATATAT
1 TAATAAATAT
31067424 TAATAAAT-T
1 TAATAAATAT
31067433 TAATAAATAT
1 TAATAAATAT
31067443 ATAATAAA
1 -TAATAAA
31067451 GCTTGCATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
8 4 0.13
9 15 0.50
10 4 0.13
11 7 0.23
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
TAATAAATAT
Found at i:31068312 original size:49 final size:49
Alignment explanation
Indices: 31068257--31068360 Score: 147
Period size: 49 Copynumber: 2.1 Consensus size: 49
31068247 TCATGTGTTA
* * ** *
31068257 TAATTTTATACAGTGTTGAGTTTTTGATTCATGATATTGAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
*
31068306 TAATTTTATAAAGTGTTCCCCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
31068355 T-ATTTT
1 TAATTTT
31068361 GTTTTTTTTC
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
48 5 0.10
49 44 0.90
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.52
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
Found at i:31070143 original size:11 final size:12
Alignment explanation
Indices: 31070112--31070144 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
31070102 ATGTCAAGTG
31070112 AATTAATTCACA
1 AATTAATTCACA
*
31070124 AATTGATTCA-A
1 AATTAATTCACA
31070135 AATTAATTCA
1 AATTAATTCA
31070145 TCTTGGGTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.36
Consensus pattern (12 bp):
AATTAATTCACA
Found at i:31071250 original size:14 final size:14
Alignment explanation
Indices: 31071231--31071262 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
31071221 AATAAACACC
*
31071231 AAAAAATTATTTTT
1 AAAAAAGTATTTTT
31071245 AAAAAAGTATTTTT
1 AAAAAAGTATTTTT
31071259 AAAA
1 AAAA
31071263 TATTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (14 bp):
AAAAAAGTATTTTT
Found at i:31071636 original size:14 final size:14
Alignment explanation
Indices: 31071617--31071657 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
31071607 ATATACACAA
31071617 ATATATAAAAATAT
1 ATATATAAAAATAT
31071631 ATATATAACAAATAT
1 ATATATAA-AAATAT
* *
31071646 ATTTATTAAAAT
1 ATATATAAAAAT
31071658 TTCTTATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATATAAAAATAT
Found at i:31071675 original size:19 final size:19
Alignment explanation
Indices: 31071653--31071716 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
31071643 TATATTTATT
31071653 AAAATTTCTTATATAAATG
1 AAAATTTCTTATATAAATG
* *** ** *
31071672 AAAAATAAATATATTTATT
1 AAAATTTCTTATATAAATG
31071691 AAAATTTCTTATATAAATG
1 AAAATTTCTTATATAAATG
31071710 AAAATTT
1 AAAATTT
31071717 GTTTTAGTTC
Statistics
Matches: 31, Mismatches: 14, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (19 bp):
AAAATTTCTTATATAAATG
Found at i:31071688 original size:38 final size:38
Alignment explanation
Indices: 31071640--31071713 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
31071630 TATATATAAC
31071640 AAATATATTTATTAAAATTTCTTATATAAATGAAAAAT
1 AAATATATTTATTAAAATTTCTTATATAAATGAAAAAT
31071678 AAATATATTTATTAAAATTTCTTATATAAATGAAAA
1 AAATATATTTATTAAAATTTCTTATATAAATGAAAA
31071714 TTTGTTTTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (38 bp):
AAATATATTTATTAAAATTTCTTATATAAATGAAAAAT
Found at i:31072087 original size:28 final size:28
Alignment explanation
Indices: 31072054--31072109 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
31072044 AATAAATATA
31072054 TTTATTTTTTTAATTTTAAAATATTTTT
1 TTTATTTTTTTAATTTTAAAATATTTTT
31072082 TTTATTTTTTTAATTTTAAAATATTTTT
1 TTTATTTTTTTAATTTTAAAATATTTTT
31072110 AAAATACTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (28 bp):
TTTATTTTTTTAATTTTAAAATATTTTT
Found at i:31072109 original size:11 final size:11
Alignment explanation
Indices: 31072095--31072177 Score: 79
Period size: 11 Copynumber: 7.9 Consensus size: 11
31072085 ATTTTTTTAA
31072095 TTTTAAAATAT
1 TTTTAAAATAT
31072106 TTTTAAAATACT
1 TTTTAAAATA-T
31072118 TTTT-AAAT-T
1 TTTTAAAATAT
* *
31072127 TTTT---TTAA
1 TTTTAAAATAT
31072135 TTTTAAAATAT
1 TTTTAAAATAT
31072146 TTTTAAAATACT
1 TTTTAAAATA-T
*
31072158 TTTTTAAA-AT
1 TTTTAAAATAT
31072168 TTTTAAAATA
1 TTTTAAAATA
31072178 AATTTTTGGT
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
7 1 0.02
8 4 0.07
9 5 0.08
10 8 0.14
11 28 0.47
12 13 0.22
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:31072120 original size:28 final size:28
Alignment explanation
Indices: 31072061--31072120 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
31072051 ATATTTATTT
*** **
31072061 TTTTAATTTTAAAATATTTTTTTTATTT
1 TTTTAATTTTAAAATATTTTTAAAATAC
31072089 TTTTAATTTTAAAATATTTTTAAAATAC
1 TTTTAATTTTAAAATATTTTTAAAATAC
31072117 TTTT
1 TTTT
31072121 TAAATTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (28 bp):
TTTTAATTTTAAAATATTTTTAAAATAC
Found at i:31072132 original size:40 final size:39
Alignment explanation
Indices: 31072067--31072171 Score: 156
Period size: 40 Copynumber: 2.6 Consensus size: 39
31072057 ATTTTTTTAA
* **
31072067 TTTTAAAATATTTTTTTTATTTTTTTAATTTTAAAATAT
1 TTTTAAAATACTTTTTAAATTTTTTTAATTTTAAAATAT
31072106 TTTTAAAATACTTTTTAAATTTTTTTTAATTTTAAAATAT
1 TTTTAAAATACTTTTTAAA-TTTTTTTAATTTTAAAATAT
*
31072146 TTTTAAAATACTTTTTTAAAATTTTT
1 TTTTAAAATAC-TTTTTAAATTTTTT
31072172 AAAATAAATT
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
39 16 0.27
40 36 0.60
41 8 0.13
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (39 bp):
TTTTAAAATACTTTTTAAATTTTTTTAATTTTAAAATAT
Found at i:31072154 original size:29 final size:30
Alignment explanation
Indices: 31072106--31072164 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
31072096 TTTAAAATAT
*
31072106 TTTTAAAATACTTTTTAAAT-TTTTTTTAA
1 TTTTAAAATACTTTTTAAATACTTTTTTAA
31072135 TTTTAAAATA-TTTTTAAAATACTTTTTTAA
1 TTTTAAAATACTTTTT-AAATACTTTTTTAA
31072165 AATTTTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 5 0.19
29 14 0.52
30 8 0.30
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.59
Consensus pattern (30 bp):
TTTTAAAATACTTTTTAAATACTTTTTTAA
Found at i:31072191 original size:22 final size:22
Alignment explanation
Indices: 31072101--31072202 Score: 63
Period size: 22 Copynumber: 4.8 Consensus size: 22
31072091 TTAATTTTAA
*
31072101 AATATTTTTAAAAT-ACTTTTT
1 AATATTTTTAAAATAAATTTTT
* * *
31072122 AA-ATTTTT---TTTAATTTTAA
1 AATATTTTTAAAATAAATTTT-T
**
31072141 AATATTTTTAAAATACTTTTTT
1 AATATTTTTAAAATAAATTTTT
*
31072163 AAAATTTTTAAAATAAATTTTT
1 AATATTTTTAAAATAAATTTTT
**
31072185 GGTATTTATTAAAA-AAAT
1 AATATTT-TTAAAATAAAT
31072203 GGGCTTGGCC
Statistics
Matches: 60, Mismatches: 14, Indels: 13
0.69 0.16 0.15
Matches are distributed among these distances:
17 1 0.02
18 5 0.08
19 2 0.03
20 12 0.20
21 2 0.03
22 27 0.45
23 11 0.18
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (22 bp):
AATATTTTTAAAATAAATTTTT
Found at i:31076053 original size:36 final size:36
Alignment explanation
Indices: 31075999--31076070 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
31075989 TATCTGTTGG
* * *
31075999 TGTCCTGGGTCTACGAGAGTTGTATTATGATGACAA
1 TGTCCTAGGTCTAAGAGAGCTGTATTATGATGACAA
*
31076035 TGTCCTAGGTGTAAGAGAGCTGTATTATGATGACAA
1 TGTCCTAGGTCTAAGAGAGCTGTATTATGATGACAA
31076071 GAATCTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.32
Consensus pattern (36 bp):
TGTCCTAGGTCTAAGAGAGCTGTATTATGATGACAA
Found at i:31082037 original size:46 final size:44
Alignment explanation
Indices: 31081946--31082038 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 44
31081936 TTACACATCT
*
31081946 ATTCCATTCAACCAAACACAAGAATACCATTACGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATACCATTACGCCTCTATTCC
*
31081990 ATTCCATTCAACCAAACAAAAGGATTACCTATTACGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAA-GAATACC-ATTACGCCTCTATTCC
31082036 ATT
1 ATT
31082039 ATGCCTCTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 20 0.44
45 6 0.13
46 19 0.42
ACGTcount: A:0.35, C:0.31, G:0.05, T:0.28
Consensus pattern (44 bp):
ATTCCATTCAACCAAACAAAAGAATACCATTACGCCTCTATTCC
Found at i:31082044 original size:16 final size:16
Alignment explanation
Indices: 31082020--31082056 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
31082010 AGGATTACCT
31082020 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
31082036 ATTATGCCTCTATTCC
1 ATTACGCCTCTATTCC
31082052 ATTAC
1 ATTAC
31082057 AGCGAACCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.32, G:0.05, T:0.41
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:31086232 original size:31 final size:31
Alignment explanation
Indices: 31086197--31086259 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
31086187 ATTAAAGAGT
31086197 AAGACTGAAAATTTGAGAAAACAAAAACATC
1 AAGACTGAAAATTTGAGAAAACAAAAACATC
*
31086228 AAGACTGAAAATTTGAGAAAATAAAAACATC
1 AAGACTGAAAATTTGAGAAAACAAAAACATC
31086259 A
1 A
31086260 CACTTATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.59, C:0.11, G:0.13, T:0.17
Consensus pattern (31 bp):
AAGACTGAAAATTTGAGAAAACAAAAACATC
Found at i:31094389 original size:89 final size:87
Alignment explanation
Indices: 31094222--31094783 Score: 218
Period size: 89 Copynumber: 6.4 Consensus size: 87
31094212 GATTCATTTA
* * * * *
31094222 TTTAGTCTGCCCCACTGCAATTTCAGGGGGATAAGACTTGCTTTCTTGAGTCTGCTCCACTGCAA
1 TTTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTACAA
* * *
31094287 ATTCAAGTAGATAAGACTATCGGT
66 ACTCAAGGAGATAAGACT-T-GCT
* * *
31094311 TTTAATCTGCCCCACTGCAACTTCAGGAAGATAAGATTTG-TCATCTTCAGTCTGC-CTCACTAC
1 TTTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCT-ATCTTCAGTCTGCTC-CACTAC
* *
31094374 AACCTC-AGGAGGATAAGTCTTGCT
64 AAACTCAAGGA-GATAAGACTTGCT
* * * * * *
31094398 TACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAG--A--TGC-GATCTGCT-CTCTG
1 T--TTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAG-TCTGCTCCACTA
*
31094457 C-AACTTC-AGAGAGATAAGATTTGCCAT
63 CAAAC-TCAAG-GAGATAAGACTTG-C-T
* * * * *
31094484 CTTCAGTCTGCCTCACTGCAACTTCA-GGAGGATAAGACTTACT-TACTT-AGTTTGCTCCACTG
1 -TTTAGTCTGCCCCACTGCAACTTCAGGGA-GATAAGACTTGCTAT-CTTCAGTCTGCTCCACTA
* * *
31094546 C-AACTTCAGGGAGATAAGACTAGAT
63 CAAAC-TCAAGGAGATAAGACTTGCT
*** * * * * * * * * * *
31094571 GGGA-TTTG-CTCTCTACAACTTCAGAGAGATAAGA--TCCAAAGTTTTAATTC-GCTCCACTAC
1 TTTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGC-TA-TCTTCAGTCTGCTCCACTAC
* * *
31094631 -AACTTCAGGGAGATAGGATTATCGGC-
64 AAAC-TCAAGGAGATAAGACT-T--GCT
* ** * * * * * **
31094657 TTTAATCTGCTTCACTGCCACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTGCTTCACT-GGA
1 TTTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTACAA
*
31094721 ACTTC-AGGAAGATAGGACTTGCT
66 AC-TCAAGG-AGATAAGACTTGCT
*
31094744 TACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
1 T--TTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACT
31094784 AGATGCGATC
Statistics
Matches: 355, Mismatches: 79, Indels: 78
0.69 0.15 0.15
Matches are distributed among these distances:
82 2 0.01
83 2 0.01
84 70 0.20
85 47 0.13
86 5 0.01
87 11 0.03
88 40 0.11
89 175 0.49
90 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (87 bp):
TTTAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTACAA
ACTCAAGGAGATAAGACTTGCT
Found at i:31094488 original size:129 final size:129
Alignment explanation
Indices: 31094225--31094605 Score: 494
Period size: 129 Copynumber: 2.9 Consensus size: 129
31094215 TCATTTATTT
* * * * *
31094225 AGTCTGCCCCACTGCAATTTCAGGGGGATAAGACTTGCTTTCTTGAGTCTGCTCCACTGCAAATT
1 AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTT-AGTCTGCTCCACTGCAACTT
* * * *** * * *
31094290 CAAGTAGATAAGACTATCGGTTTTAATCTGCCCCACTGCAACTTCAG-GAAGATAAGATTTGTCA
65 CAGGGAGATAAGACTA---GATGCGATCTG-CTCTCTGCAACTTCAGAG-AGATAAGATTTGCCA
31094354 TCTTC
125 TCTTC
* * * *
31094359 AGTCTGCCTCACTACAACCTCAGGAGGATAAGTCTTGCTTACTTAGTCTGCTCCACTACAACTTC
1 AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTC
31094424 AGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATTTGCCATCTTC
66 AGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATTTGCCATCTTC
* *
31094488 AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTACTTACTTAGTTTGCTCCACTGCAACTTC
1 AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTC
* * *
31094553 AGGGAGATAAGACTAGATGGGATTTGCTCTCTACAACTTCAGAGAGATAAGAT
66 AGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
31094606 CCAAAGTTTT
Statistics
Matches: 219, Mismatches: 27, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
129 142 0.65
130 8 0.04
133 32 0.15
134 37 0.17
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (129 bp):
AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTC
AGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATTTGCCATCTTC
Done.