Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_318 ID=scaffold_318-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8259
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:6868 original size:15 final size:15

Alignment explanation


    Indices: 6848--6886  Score: 51
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       6838 GATCAAGAAA

                   *    *  
       6848 TTTGGATTAGATTGG
          1 TTTGGATCAGATCGG

                           
       6863 TTTGGATCAGATCGG
          1 TTTGGATCAGATCGG

            *        
       6878 ATTGGATCA
          1 TTTGGATCA

       6887 TTGAAGACTT


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.23, C:0.08, G:0.31, T:0.38


Consensus pattern (15 bp):   
TTTGGATCAGATCGG
Done.