Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_323 ID=scaffold_323-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8835
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.30
Warning! 625 characters in sequence are not A, C, G, or T
Found at i:6946 original size:108 final size:108
Alignment explanation
Indices: 6757--7056 Score: 487
Period size: 108 Copynumber: 2.8 Consensus size: 108
6747 NNNNNNNNNN
* *
6757 AATATTGTCTTATTTTGAAAATTTTTGAAAAGGATATTAACTCATTTGGTCGAACGAGAAATCGA
1 AATATTGCCTTATTTTGAAAATTTTTGAAAAGGATATTAAGTCATTTGGTCGAACGAGAAATCGA
*
6822 AACCCAATACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAA
66 AACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAA
*
6865 AATATTGCCTTATTTTGAAAATTTTTGAAAAGGATATTAAGTCATTTGGTGGAACGAGAAATCGA
1 AATATTGCCTTATTTTGAAAATTTTTGAAAAGGATATTAAGTCATTTGGTCGAACGAGAAATCGA
*
6930 AACCCAGTACCTTAGGGCACGTTCCTCTAATTTCCAAACGCAA
66 AACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAA
* * *
6973 AACATTGCCTTATTTTTGAAAAGTTTTT-AAAACGATATTTAG-CTATTTGGTCGAACGAGAAAT
1 AATATTGCCTTA-TTTTGAAAA-TTTTTGAAAAGGATATTAAGTC-ATTTGGTCGAACGAGAAAT
7036 CGAAACCCAGTACCTTAGGGC
63 CGAAACCCAGTACCTTAGGGC
7057 NNNNNNNNNN
Statistics
Matches: 180, Mismatches: 9, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
108 115 0.64
109 60 0.33
110 5 0.03
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (108 bp):
AATATTGCCTTATTTTGAAAATTTTTGAAAAGGATATTAAGTCATTTGGTCGAACGAGAAATCGA
AACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAA
Done.