Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_330 ID=scaffold_330-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8120
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:6694 original size:5 final size:5

Alignment explanation


    Indices: 6684--6708  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

       6674 GAAAACGCAC

                                         
       6684 ATTTT ATTTT ATTTT ATTTT ATTTT
          1 ATTTT ATTTT ATTTT ATTTT ATTTT

       6709 TATCTTATCT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80


Consensus pattern (5 bp):   
ATTTT

Done.