Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_337 ID=scaffold_337-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8077
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.33


Found at i:537 original size:2 final size:2

Alignment explanation


    Indices: 530--561  Score: 55
    Period size: 2  Copynumber: 16.0  Consensus size: 2

        520 AACAATATTT

                                                    *      
        530 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

        562 CCACATTACA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
TA

Done.