Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_364 ID=scaffold_364-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7885
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:644 original size:19 final size:19

Alignment explanation


    Indices: 617--656  Score: 71
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        607 GCAATTGATT

                *              
        617 TTACGTGAATTGGGAATTC
          1 TTACATGAATTGGGAATTC

                               
        636 TTACATGAATTGGGAATTC
          1 TTACATGAATTGGGAATTC

              
        655 TT
          1 TT

        657 TGTTGCCTGT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40


Consensus pattern (19 bp):   
TTACATGAATTGGGAATTC

Found at i:4630 original size:19 final size:18

Alignment explanation


    Indices: 4586--4630  Score: 54
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       4576 GTGTCTTTCG

                              
       4586 TTTCCAAAACATTATTCA
          1 TTTCCAAAACATTATTCA

               *    * *        
       4604 TTTACAAATCGTTATTCAA
          1 TTTCCAAAACATTATTC-A

                    
       4623 TTTCCAAA
          1 TTTCCAAA

       4631 CGGTTTTTTA


Statistics
Matches: 22,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  18   14  0.64
  19    8  0.36

ACGTcount: A:0.38, C:0.20, G:0.02, T:0.40


Consensus pattern (18 bp):   
TTTCCAAAACATTATTCA
Done.