Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_378 ID=scaffold_378-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7679
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:3582 original size:32 final size:32

Alignment explanation


    Indices: 3545--3611  Score: 125
    Period size: 32  Copynumber: 2.1  Consensus size: 32

       3535 TGTGATCTCA

                           *                
       3545 AATTCATACAATCATGATGAACATCCTAAAAT
          1 AATTCATACAATCATAATGAACATCCTAAAAT

                                            
       3577 AATTCATACAATCATAATGAACATCCTAAAAT
          1 AATTCATACAATCATAATGAACATCCTAAAAT

               
       3609 AAT
          1 AAT

       3612 ATAATTATCA


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   34  1.00

ACGTcount: A:0.49, C:0.18, G:0.04, T:0.28


Consensus pattern (32 bp):   
AATTCATACAATCATAATGAACATCCTAAAAT
Done.