Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_38 ID=scaffold_38-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 59433
ACGTcount: A:0.13, C:0.12, G:0.09, T:0.16
Warning! 29910 characters in sequence are not A, C, G, or T
Found at i:219 original size:88 final size:88
Alignment explanation
Indices: 77--273 Score: 315
Period size: 88 Copynumber: 2.2 Consensus size: 88
67 CTTCATCCTA
* * *
77 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTTCTTCTCTACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGCAAGA
142 TAAGATTCACCA-TCTTCGATCTG
66 TAAGATTCA-CATTCTTCGATCTG
* *
165 CTCCACTACTGCTTAGGGTGATAGGATTAATGGCTTAAATCTACTTCTCCACTGTATTTGCAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGCAAGA
* *
230 TTAGATTCACATTCTTGGATCTG
66 TAAGATTCACATTCTTCGATCTG
253 CTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGA
274 CAGAATCAGC
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
87 2 0.02
88 99 0.98
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGCAAGA
TAAGATTCACATTCTTCGATCTG
Found at i:313 original size:132 final size:132
Alignment explanation
Indices: 165--801 Score: 907
Period size: 132 Copynumber: 4.8 Consensus size: 132
155 CTTCGATCTG
* * * *
165 CTCCACTACTGCTTAGGGTGATAGGATTAATGGCTTAAATCTACTTCTCCACTGTATTTGCAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * *
230 TTAGATTCA-CATTCTTGGATCTGCTCCACTACTGCTTAGGGTGACAGAATCAGCAATCTTCAAC
66 TAAGATTCACCA-TCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
294 CTA
130 CTA
297 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * * * *
362 TAAGATTCATCATATTTGATATGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
427 TA
131 TA
* * ** * * *
429 CTCCACTACTGCTTTGGGAGATAGGTGTAATGGCTCAAATCTACTTCTCTACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * *
494 TCAGATTCACCATCTTCGATCTACTCCACGATTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
559 TA
131 TA
* * * *
561 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATTTGTTTCTCCACTGTATTCGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* *
626 TAAGATTCACCATCTTCGATCCGCTGCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
691 TA
131 TA
* * * * *
693 CTCCATTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTGCACTCTATTGGGAACA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * *
758 TAAGATTCACCATCTTCGATCTACGCCACTACAGTTTAGGGTGA
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGA
802 TATGATTAAT
Statistics
Matches: 444, Mismatches: 60, Indels: 2
0.88 0.12 0.00
Matches are distributed among these distances:
132 442 1.00
133 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
TA
Found at i:435 original size:44 final size:44
Alignment explanation
Indices: 385--577 Score: 112
Period size: 44 Copynumber: 4.4 Consensus size: 44
375 ATTTGATATG
* *
385 CTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTA
1 CTCCACTACTGTTTAGGGAGACAGAATCTGCAATCTTCAACCTA
* * * *
429 CTCCACTACTGCTTT-GGGAGATAG---GTGTAATGGC-TCAAATCTA
1 CTCCACTACTG-TTTAGGGAGACAGAATCTGCAAT--CTTC-AACCTA
* * * * * * *
472 CTTCTCTACTGTATT-GGGAAGATCAGATTC-ACCATCTTCGATCTA
1 CTCCACTACTGT-TTAGGG-AGA-CAGAATCTGCAATCTTCAACCTA
* * * *
517 CTCCACGATTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGTTTAGGGAGACAGAATCTGCAATCTTCAACCTA
*
561 CTCCACTACTGCTTAGG
1 CTCCACTACTGTTTAGG
578 ATGATAGGAC
Statistics
Matches: 111, Mismatches: 25, Indels: 26
0.69 0.15 0.16
Matches are distributed among these distances:
41 6 0.05
42 3 0.03
43 26 0.23
44 51 0.46
45 21 0.19
46 2 0.02
47 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
CTCCACTACTGTTTAGGGAGACAGAATCTGCAATCTTCAACCTA
Found at i:520 original size:220 final size:218
Alignment explanation
Indices: 28--537 Score: 530
Period size: 220 Copynumber: 2.3 Consensus size: 218
18 ATCATATTTG
* * * * *
28 ATCTGCTCCGCTACTGTTTAGGGTGACAGAATCTGCAATCTTCATCCTACTCCACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGACAGAATCAGCAATCTTCAT-CTACTCCACTACTGCTTAG
* * *
93 GGTGATAGGACTAATGGCTTAAATCTTCTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTT
65 GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATT
* * * * * *
158 CGATCTGCTCCACTACTGCTTAGGGTGATAGGATTAATGGCTTAAATCTACTTCTCCACTGTATT
130 CGATATGCTCCACTACTGCTTAGGGTGACAGAATTAAT-GCTTAAACCTACTCCACCACTGTATT
* ***
223 TGCAAGATTAGATTCACATTCTTGG
194 TGCAAGATTAGATTCACATGCTCAA
* * *
248 ATCTGCTCCACTACTGCTTAGGGTGACAGAATCAGCAATCTTCAACCTACTCCACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGACAGAATCAGCAATCTTC-ATCTACTCCACTACTGCTTAG
*
313 GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATT
65 GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATT
* * * * *
378 TGATATGCTCCACTACTGTTTAGGGTGACAGAATCTGTAAT-CTTCAACCTACTCCACTACTG-C
130 CGATATGCTCCACTACTGCTTAGGGTGACAGAA--T-TAATGCTTAAACCTACTCCACCACTGTA
** *
441 TTTGGGAGA-TAGGTGT-A-ATGGCTCAA
192 TTTGCAAGATTAGAT-TCACAT-GCTCAA
* * * * * * *
467 ATCTACTTCTCTACTG-TATTGGGAAGATCAGATTCA-CCATCTTCGATCTACTCCACGATTGCT
1 ATCTACTCCACTACTGCT-TAGGG-AGA-CAGAATCAGCAATCTTC-ATCTACTCCACTACTGCT
530 TAGGGTGA
62 TAGGGTGA
538 CAGAATCTGC
Statistics
Matches: 244, Mismatches: 37, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
218 3 0.01
219 24 0.10
220 188 0.77
221 24 0.10
222 1 0.00
223 4 0.02
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (218 bp):
ATCTACTCCACTACTGCTTAGGGAGACAGAATCAGCAATCTTCATCTACTCCACTACTGCTTAGG
GTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTC
GATATGCTCCACTACTGCTTAGGGTGACAGAATTAATGCTTAAACCTACTCCACCACTGTATTTG
CAAGATTAGATTCACATGCTCAA
Found at i:849 original size:88 final size:88
Alignment explanation
Indices: 679--889 Score: 242
Period size: 88 Copynumber: 2.4 Consensus size: 88
669 ACAGAATCTG
* * * * * *
679 CAATCTTCAACCTACTCCATTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTGCA
1 CAATCTTCGATCTACGCCACTACAGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCA
* *
744 CTCTATTGGGAACATAAGATTCA
66 ATCTATTGGCAACATAAGATTCA
* * * * *
767 CCATCTTCGATCTACGCCACTACAGTTTAGGGTGATATGATTAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTCGATCTACGCCACTACAGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCA
* * *
832 ATGTATTTGCAAGATAAGATTCA
66 ATCTATTGGCAACATAAGATTCA
* * * *
855 CAATCTTGGATCTGCTCCACTACTGCTTAGGGTGA
1 CAATCTTCGATCTACGCCACTACAGCTTAGGGTGA
890 CAGCATTAGC
Statistics
Matches: 101, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
88 101 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (88 bp):
CAATCTTCGATCTACGCCACTACAGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCA
ATCTATTGGCAACATAAGATTCA
Found at i:916 original size:396 final size:394
Alignment explanation
Indices: 165--933 Score: 901
Period size: 396 Copynumber: 1.9 Consensus size: 394
155 CTTCGATCTG
* * *
165 CTCCACTACTGCTTAGGGTGATAGGATTAATGGCTTAAATCTACTTCTCCACTGTATTTGCAAGA
1 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTCGCAAGA
* * *
230 TTAGATTCACATTCTTGGATCTGCTCCACTACTGCTTAGGGTGACAGAATCAGCAATCTTCAACC
66 TAAGATTCACATTCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCAGCAATCTTCAACC
* *
295 TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAA
131 TACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAA
* * * * * * *
360 GATAAGATTCATCATATTTGATATGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAA
196 CATAAGATTCACCATATTCGATATACGCCACTACAGTTTAGGGTGACAGAA-CTGTAATCTTAAA
* * * ** * * * *
425 CCTACTCCACTACTGCTTTGGGAGATAGGTGTAATGGCTCAAATCTACTTCTCTACTGTATTGGG
260 CCTACTCCACCAATGATTTGCAAGATAGATGTAAT-GCTCAAATCTACTCCACTACTGTATAGGG
* * * * *
490 AAGATCAGATTCACCATCTTCGATCTACTCCACGATTGCTTAGGGTGACAGAATCTGCAATCTTC
324 AAGATCAGATTCACAATCTTCAACCTACTCCACCACTGCTTAGGGTGACAGAATCTGCAATCTTC
555 AACCTA
389 AACCTA
* ** *
561 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATTTGTTTCTCCACTGTATTCGGAAGA
1 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTCGCAAGA
* *
626 TAAGATTCACCA-TCTTCGATCCGCTGCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
66 TAAGATTCA-CATTCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCAGCAATCTTCAAC
* *
690 CTACTCCATTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTGCACTCTATTGGGA
130 CTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGA
* * *
755 ACATAAGATTCACCATCTTCGATCTACGCCACTACAGTTTAGGGTGATATG-A-T-TAATGGCTT
195 ACATAAGATTCACCATATTCGATATACGCCACTACAGTTTAGGGTGACA-GAACTGTAAT--CTT
* * * * *** *
817 AAATCTGCTTCTCCAATGTATTTGCAAGATAAGAT-TCACAAT-CTTGGATCTGCTCCACTACTG
257 AAACCTACTCCACCAATG-ATTTGCAAGAT-AGATGT---AATGCTCAAATCTACTCCACTACTG
*
880 CT-TAGGG-TGA-CAGCATT-AGCAATCTTCAACCTACTCCACCACTGCTTAGGGTGA
317 -TATAGGGAAGATCAG-ATTCA-CAATCTTCAACCTACTCCACCACTGCTTAGGGTGA
934 TAGGACTAAT
Statistics
Matches: 312, Mismatches: 49, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
393 4 0.01
394 1 0.00
395 18 0.06
396 260 0.83
397 25 0.08
398 1 0.00
399 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (394 bp):
CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTCGCAAGA
TAAGATTCACATTCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCAGCAATCTTCAACC
TACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAA
CATAAGATTCACCATATTCGATATACGCCACTACAGTTTAGGGTGACAGAACTGTAATCTTAAAC
CTACTCCACCAATGATTTGCAAGATAGATGTAATGCTCAAATCTACTCCACTACTGTATAGGGAA
GATCAGATTCACAATCTTCAACCTACTCCACCACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
CCTA
Found at i:952 original size:220 final size:220
Alignment explanation
Indices: 549--965 Score: 620
Period size: 220 Copynumber: 1.9 Consensus size: 220
539 AGAATCTGCA
* * * * *
549 ATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATTTGTTTCTCCACT
1 ATCTTCAACCTACGCCACTACAGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCAAT
* * *
614 GTATTCGGAAGATAAGATTCACCATCTTCGATCCGCTGCACTACTGCTTAGGGTGACAGAATCTG
66 GTATTCGCAAGATAAGATTCACAATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTG
** *
679 CAATCTTCAACCTACTCCATTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTGCA
131 CAATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCA
744 CTCTATTGGGAACATAAGATTCACC
196 CTCTATTGGGAACATAAGATTCACC
* * * * * *
769 ATCTTCGATCTACGCCACTACAGTTTAGGGTGATATGATTAATGGCTTAAATCTGCTTCTCCAAT
1 ATCTTCAACCTACGCCACTACAGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCAAT
* * * *
834 GTATTTGCAAGATAAGATTCACAATCTTGGATCTGCTCCACTACTGCTTAGGGTGACAGCAT-TA
66 GTATTCGCAAGATAAGATTCACAATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCT-
*
898 GCAATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCC
130 GCAATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCC
963 ACT
195 ACT
966 GTATNNNNNN
Statistics
Matches: 174, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
219 1 0.01
220 173 0.99
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (220 bp):
ATCTTCAACCTACGCCACTACAGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCAAT
GTATTCGCAAGATAAGATTCACAATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTG
CAATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCA
CTCTATTGGGAACATAAGATTCACC
Found at i:1687 original size:132 final size:132
Alignment explanation
Indices: 1445--2184 Score: 993
Period size: 132 Copynumber: 5.6 Consensus size: 132
1435 NNNNNNNNNN
* * *
1445 ACTATTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTTCACTGTATTGGGAAGATCAG
1 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAG
* * * * * * **
1510 ATTTATCATATTCGATCAGCTCCACTACTATTTAGGGTAACAGAATCTATAATCTTCAACCTACT
66 ATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
1575 CC
131 CC
* *
1577 ACCACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAG
1 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAG
* **
1642 ATTCGCCATCTTCGATCTGCAT-CACTACTGGTTAGGGTGACAGAATCTGCAATCTTCAA-CTGA
66 ATTCACCATCTTCGATCTGC-TCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCT-A
1705 CTCC
129 CTCC
*
1709 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTTCACTGTATTGGGAAGATAAG
1 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAG
* * * * * * *
1774 ATTTATCATATTCGATCTGCTCCACTACT-CTTTAAGGTGACAGAAACTGTAATCTTTAACCTAC
66 ATTCACCATCTTCGATCTGCTCCACTACTAC-TTAGGGTGACAGAATCTGCAATCTTCAACCTAC
1838 TCC
130 TCC
* * * * * * * *
1841 ACTACTACTTA-GGTAGATTGGACTAATGGCTTACATCTGCTGCTCCACTATTTTGAGAAGATAT
1 ACTACTGCTTAGGGT-GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
* * * * *
1905 GATTCACGATCTTCGATCCGCTCCACTACTGCTTAGGGCGATAGAATCTGCAATCTTCAACCTAC
65 GATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
*
1970 TGC
130 TCC
* * *
1973 ACTCCTGCTTAGGGTGATAGGACCAATGGCTTAAATCTGCTTCTCCACTGTATTTGGAAGATAAG
1 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAG
*
2038 ATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTAACAGAATCTGCAATCTTCAACCTACT
66 ATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
2103 CC
131 CC
* * * *
2105 ACTACTGCTTAGGGTGATAGGACTAATGGCTGAAATCTACTTATCCACTATATTGGGAAGATAAG
1 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAG
2170 ATTCTACCATCTTCG
66 ATTC-ACCATCTTCG
2185 NNNNNNNNNN
Statistics
Matches: 526, Mismatches: 73, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
131 6 0.01
132 503 0.96
133 17 0.03
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAG
ATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
CC
Found at i:2523 original size:132 final size:132
Alignment explanation
Indices: 2285--3168 Score: 1279
Period size: 132 Copynumber: 6.7 Consensus size: 132
2275 NNNNNNNNNN
* *
2285 GTGATAGGACTAATGGCTTAAATCTTCTTCTCCACTGTATTGGGAAGATAAGATTCGCCATCTTC
1 GTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
* * **
2350 GATCTGCAT-CACTACTGGTTAGGGTGAAAGAATCTATAATCTTCAACCTACTCCACTACTGCTT
66 GATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
2414 AGG
130 AGG
*
2417 GTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTC
1 GTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
* * * * ** *
2482 GATCTACTCCGCTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTATTCAAGAACTGATTA
66 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
2547 GG
131 GG
* ** * * *
2549 GTGATAGGACTAATGGCTTACATCTGCTTCTCCACAATCTTGAGAAGATATGATTCACCATCTTC
1 GTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
* * *
2614 GATCTGCTGCACAACTGCTTAGCGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
66 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
2679 GG
131 GG
* *
2681 GTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGAGAAGATTCACCATCTTC
1 GTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
* * *
2746 GATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGTAATCGTCAACCTACTCCACTACTGCTTA
66 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
2811 GG
131 GG
* * *
2813 GCGATACGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGATACA-ATTCACCATCTT
1 GTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATA-AGATTCACCATCTT
* * * * * *
2877 CGATCT-CTATCACTACTGGTTAGGGTGACAGAATCTACAATCTTCAACCGAATCCACTACTACT
65 CGATCTGCT-CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
2941 TAGG
129 TAGG
* * *
2945 ATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGTAGATAAGCTTCACCATCTTC
1 GTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
* * * *
3010 GATCCGCTGCACTACTGCTGAGGGTGACAGAATCTGCAATCTTCAACCTTCTCCACTACTGCTTA
66 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
3075 GG
131 GG
* * * *
3077 GTGATAGGACTAATGACTTAAATCTGCTTCTCAACTCTATTGGGAACATAAGATTCACCATCTTC
1 GTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
*
3142 GATCTGCGCCACTACTGCTTAGGGTGA
66 GATCTGCTCCACTACTGCTTAGGGTGA
3169 TAGGATTAAT
Statistics
Matches: 669, Mismatches: 78, Indels: 10
0.88 0.10 0.01
Matches are distributed among these distances:
131 4 0.01
132 662 0.99
133 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (132 bp):
GTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
GG
Found at i:3216 original size:88 final size:88
Alignment explanation
Indices: 3062--3252 Score: 292
Period size: 88 Copynumber: 2.2 Consensus size: 88
3052 TCAACCTTCT
*
3062 CCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCAACTCTATTGGGAACATA
1 CCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCAACTCTATTGGCAACATA
* *
3127 AGATTCACCATCTTCGATCTGCG
66 AGATTCACAATCTTCGATCTACG
* * * * * *
3150 CCACTACTGCTTAGGGTGATAGGATTAATGGCTTAAATCTGCTTCTCCACTGTATTTGCAAGATA
1 CCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCAACTCTATTGGCAACATA
*
3215 AGATTCACAATCTTCGATCTACT
66 AGATTCACAATCTTCGATCTACG
3238 CCACTACTGCTTAGG
1 CCACTACTGCTTAGG
3253 TTGACNNNNN
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 93 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (88 bp):
CCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCAACTCTATTGGCAACATA
AGATTCACAATCTTCGATCTACG
Found at i:4146 original size:132 final size:132
Alignment explanation
Indices: 3790--6221 Score: 2057
Period size: 132 Copynumber: 18.5 Consensus size: 132
3780 NNNNNNNNNN
* * * *
3790 TAATGGCTTAAATTTGCTTCTCCACTGTATTGGTAAGATAAGATTCACCATCTTTGATCTCCTCC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
* * * * *
3855 AGTATTGCTTAGGGTGACAGAATCTGCAATCCTCAACCTACACCACTACTTCTTAGGGTGATAGG
66 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-G
3920 GA-
130 GAC
* * *
3922 TAATGGCTTATATCTGCTTCTCCACTGTATTGGG-AGATAAGATTCATCATATTCGATCTGCTCC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
* * * ** * *
3986 ACTACTGTTTAGGGTGACAAAATCTGCAATATTTGACCTACTCCACTACTGCTCAGGGAGATAGG
66 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
4051 AC
131 AC
* * * ** * *
4053 TAAAGGCTTAAATCTACTTCTCCACTGTTTTCAGAAGATATGATTCACCATCTTCGATCCGCTCC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
* * * * *
4118 TCTACTGCTTAGGGCGATAGAATCTGCAATCTTCAACCCACTCCACTCCTGCTTAGGGTGATAGG
66 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
4183 AC
131 AC
* * *
4185 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACGATTTTTGATCT-CTTC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TC
** * *
4249 CACTGTTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTGCTCCACGT--T-CATAGGGTGATA
65 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC-TACTGCTTAGGGTGATA
4311 GGAC
129 GGAC
* * *
4315 TAATGGCTTAAATCTGTTTCTCCACTGTATTGGG-AGATAAGATTCATCATATTCGATCTGCTCC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
* * * ** * *
4379 ACTACTGTTTAGGGTGACAAAATCTGCAATATTTGACCTACTCCACTACTGCTCAGGGAGATAGG
66 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
4444 AC
131 AC
* * * *
4446 TAAAGGCTTAAATCTACTTCTCCACTGTATTGGCAAGATAAGATTCACCATCTTCGATCTACTCC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
* * * * *
4511 AATATTGCTTAGGGTGACGGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATAATAGG
66 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
4576 AC
131 AC
* * * *
4578 TAATGACTGAAATATGCTTCTCCACTGTATTGCGAAGATAAGATTCACCATCTTCGATCTGCTCC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
4643 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
66 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
4708 AC
131 AC
* * * *
4710 GAATGGCTTAAATCTACTTCTCCACTATATTGGGAAGACAAGATTCACCATCCTT-GATCTGCAT
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCAT-CTTCGATCTGC-T
* * *
4774 -CACTTCTGGTTAGGGTGACAGAATCTGCAATCCTCAA-CTGACTCCACTACTGCTTAGGGTGAT
64 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTGAT
*
4837 AGGAT
128 AGGAC
4842 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
* * ** * * *
4907 ACGT-CTG-TTCAGGGTGACAAAATCTGCAATATTTGACCTACTCCACTACTGCTCAGGGAGATG
66 AC-TACTGCTT-AGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA
4970 GGAC
129 GGAC
* * *
4974 TAATGGCTTAAATCTACTTCTCCAGTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
* * * * *
5039 ACTAATGCTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCGCTACTGCTTACGATGATAGG
66 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
5104 AC
131 AC
* * * * * *
5106 TAATGGCTTAAATTTGTTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCAATCCGCTGC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
* *
5171 ACTACTGCTGAGGGTGACAGAATCTGCAATCTTCAACCTACTCCATTACTGCTTAGGGTGATAGG
66 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
5236 AC
131 AC
* * * * * *
5238 TAATGACTTAAATCTGCTTCTGCACTCTATTGGGAACATAAGATTCACCATCTTGGATCTGCGCC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
* * * * * * * * * * ***
5303 ACTACTGCTTAGGGTGATAGGAT-T--AATGGCTTAAATCTGCTTCTCCACTGTATTTGCAAGAT
66 ACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTG-CTTAGGGTGAT
5365 AGGATTC
128 AGGA--C
* ** * * * * * * * * * * *
5372 ACAAT--CTTGGATCTGCTCCACTACTGCT-TCGGG-TGA-CAGAATCAGCAATCTTCAACCTAC
1 -TAATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCA-CCATCTTCGATCTGC
* * * * * * * * * *
5432 TCCACCACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTGCTTCTCCACTG-TATTGGGA
63 TCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGGG-
* * *
5493 AGATAAGAT
124 TGATAGGAC
* ** ** ** * * * * * *
5502 TCATCATCTTCGATCTG---CTCCAC--TATTGCTTATGGTGACAGAATCTACAATCTTCAACCT
1 TAAT-GGCTTAAATCTGCTTCTCCACTGTATTG-GGAAGAT-A-AGATTC-ACCATCTTCGATCT
** ** ** * * * * * * *
5562 AATCCACTACTGCTTAGGAAGATTGGAT-T-AAAGGCTTACATCTGTTCTCCACTA-T-CTTAAG
61 GCTCCACTACTGCTTAGGGTGACAGAATCTGCAA-TCTT-CAAC-CTACTCCACTACTGCTTAGG
** * *
5623 AAGATAAGAT
123 GTGATAGGAC
** * * * * * * * * * * * *
5633 TCACCAT--CTTCGATCCGCTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAACCT
1 T-A--ATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTC-ACCATCTTCGATCT
* * * * * * * * * *
5693 ACTCCACCACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTACTTCTCCACTG-TATTGG
61 GCTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACTACTGCT-TAGG
* * * *
5754 GAAGACAAGAT
123 G-TGATAGGAC
* * * * * * * * * * *
5765 TCACCAT--C-TACGATCAGCATCACTACT-TGTTAGG--G-TCACAGAATCTGCAATCTTC-AA
1 T-A--ATGGCTTA-AATCTGCTTCTCCACTGTATTGGGAAGAT-A-AGATTC-ACCATCTTCGAT
* * * **
5822 CTGACTCCACTACTGCTTAGGGTGACAGCATCTGCAATCTTCAACCTATTCAAGAACTGCTTAGG
59 CTG-CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
5887 GTGATAGGAC
123 GTGATAGGAC
* * * * * *
5897 TAATGGCTTACATCTGTTTCTCCACTTTATTTGAAAGATAAGATTCACAATCTTCGATCTGCTCC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
* *
5962 ACTACTGCTTCGGGTGACAGAATCTGCAATCTTCAACCTACTCCAATACTGCTTAGGGTGATAGG
66 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
6027 AC
131 AC
* *
6029 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACAATTTTCGATCTGCTCC
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
* *
6094 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCCACTCCACTACTGCGTAGGGTGATAGG
66 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
6159 AC
131 AC
* * * *
6161 TAATGGCTGAAATCTACTTATCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTG
1 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTG
6222 NNNNNNNNNN
Statistics
Matches: 1893, Mismatches: 327, Indels: 160
0.80 0.14 0.07
Matches are distributed among these distances:
126 1 0.00
127 2 0.00
128 1 0.00
129 81 0.04
130 61 0.03
131 269 0.14
132 1387 0.73
133 62 0.03
134 19 0.01
135 7 0.00
136 2 0.00
137 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCC
ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGG
AC
Found at i:5371 original size:88 final size:88
Alignment explanation
Indices: 5217--5407 Score: 283
Period size: 88 Copynumber: 2.2 Consensus size: 88
5207 CCTACTCCAT
* *
5217 TACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTGCACTCTATTGGGAACATAAGAT
1 TACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGCAACATAAGAT
*
5282 TCACCATCTTGGATCTGCGCCAC
66 TCACAATCTTGGATCTGCGCCAC
* * * * * *
5305 TACTGCTTAGGGTGATAGGATTAATGGCTTAAATCTGCTTCTCCACTGTATTTGCAAGATAGGAT
1 TACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGCAACATAAGAT
*
5370 TCACAATCTTGGATCTGCTCCAC
66 TCACAATCTTGGATCTGCGCCAC
*
5393 TACTGCTTCGGGTGA
1 TACTGCTTAGGGTGA
5408 CAGAATCAGC
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 92 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (88 bp):
TACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGCAACATAAGAT
TCACAATCTTGGATCTGCGCCAC
Found at i:5397 original size:220 final size:220
Alignment explanation
Indices: 5084--5539 Score: 660
Period size: 220 Copynumber: 2.1 Consensus size: 220
5074 ACCGACTCCG
* * * *
5084 CTACTGCTTACGATGATAGGACTAATGGCTTAAATTTGTTTCTCCACTATATTGGGAAGATAAGA
1 CTACTGCTTACGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGCAAGATAAGA
* * *
5149 TTCACCATCTTCAATCCGCTGCACTACTGCTGAGGGTGACAGAATCTGCAATCTTCAACCTACTC
66 TTCACAATCTTCAATCCGCTCCACTACTGCTGAGGGTGACAGAATCAGCAATCTTCAACCTACTC
** *
5214 CATTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTGCACTCTATTGGGAACATAA
131 CACCACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAACATAA
*
5279 GATTCACCATCTTGGATCTGCGCCA
196 GATTCACCATCTTCGATCTGCGCCA
* * * * *
5304 CTACTGCTTAGGGTGATAGGATTAATGGCTTAAATCTGCTTCTCCACTGTATTTGCAAGATAGGA
1 CTACTGCTTACGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGCAAGATAAGA
** * **
5369 TTCACAATCTTGGATCTGCTCCACTACTGCTTCGGGTGACAGAATCAGCAATCTTCAACCTACTC
66 TTCACAATCTTCAATCCGCTCCACTACTGCTGAGGGTGACAGAATCAGCAATCTTCAACCTACTC
* * *
5434 CACCACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
131 CACCACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAACATAA
* *
5499 GATTCATCATCTTCGATCTGCTCCA
196 GATTCACCATCTTCGATCTGCGCCA
* *
5524 CTATTGCTTATGGTGA
1 CTACTGCTTACGGTGA
5540 CAGAATCTAC
Statistics
Matches: 208, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
220 208 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (220 bp):
CTACTGCTTACGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGCAAGATAAGA
TTCACAATCTTCAATCCGCTCCACTACTGCTGAGGGTGACAGAATCAGCAATCTTCAACCTACTC
CACCACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAACATAA
GATTCACCATCTTCGATCTGCGCCA
Found at i:5810 original size:263 final size:264
Alignment explanation
Indices: 5301--5842 Score: 806
Period size: 263 Copynumber: 2.1 Consensus size: 264
5291 TGGATCTGCG
** * * *
5301 CCACTACTGCTTAGGGTGATAGGATTAATGGCTTAAATCTGCTTCTCCACTGTATTTGCAAGATA
1 CCACTACTGCTTAGGAAGATAGGATTAAAGGCTTAAATCTGCTTCTCCACTATATTAGCAAGATA
* * * *
5366 GGATTCACAATCTTGGATCTGCTCCACTACTGCTTCGGGTGACAGAATCAGCAATCTTCAACCTA
66 AGATTCACAATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCAGCAATCTTCAACCTA
*
5431 CTCCACCACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
131 CTCCACCACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGA
* * * * * *
5496 TAAGATTCATCATCTTCGATCTGCTCCACTATTGCTTATGGTGACAGAATCTACAATCTTCAACC
196 CAAGATTCACCATCTACGATCAGCTCCACTATTGCTTAGGGTCACAGAATCTACAATCTTCAA-C
5561 T-AAT
260 TGAAT
* * *
5565 CCACTACTGCTTAGGAAGATTGGATTAAAGGCTTACATCTG-TTCTCCACTATCTTAAG-AAGAT
1 CCACTACTGCTTAGGAAGATAGGATTAAAGGCTTAAATCTGCTTCTCCACTATATT-AGCAAGAT
* *
5628 AAGATTCACCATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
65 AAGATTCACAATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCAGCAATCTTCAACCT
5693 ACTCCACCACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAG
130 ACTCCACCACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAG
*
5758 ACAAGATTCACCATCTACGATCAGCAT-CACTACTTG-TTAGGGTCACAGAATCTGCAATCTTCA
195 ACAAGATTCACCATCTACGATCAGC-TCCACTA-TTGCTTAGGGTCACAGAATCTACAATCTTCA
*
5821 ACTGACT
258 ACTGAAT
5828 CCACTACTGCTTAGG
1 CCACTACTGCTTAGG
5843 GTGACAGCAT
Statistics
Matches: 251, Mismatches: 23, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
262 2 0.01
263 208 0.83
264 41 0.16
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (264 bp):
CCACTACTGCTTAGGAAGATAGGATTAAAGGCTTAAATCTGCTTCTCCACTATATTAGCAAGATA
AGATTCACAATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCAGCAATCTTCAACCTA
CTCCACCACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGA
CAAGATTCACCATCTACGATCAGCTCCACTATTGCTTAGGGTCACAGAATCTACAATCTTCAACT
GAAT
Found at i:5944 original size:176 final size:176
Alignment explanation
Indices: 5650--6022 Score: 536
Period size: 176 Copynumber: 2.1 Consensus size: 176
5640 CTTCGATCCG
* *
5650 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACCACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCAACAACTGCTTAGGGTGA
* *
5715 TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGACAAGATTCACCATCTACGATC
66 TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGAAAGACAAGATTCACAATCTACGATC
5780 AGCAT-CACTACTTG-TTAGGGTCACAGAATCTGCAATCTTCAA-CTGA
131 AGC-TCCACTAC-TGCTTAGGGTCACAGAATCTGCAATCTTCAACCT-A
* * *
5826 CTCCACTACTGCTTAGGGTGACAGCATCTGCAATCTTCAACCTATTCAAGAACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCAACAACTGCTTAGGGTGA
* ** * * * *
5891 TAGGACTAATGGCTTACATCTGTTTCTCCACTTTATTTGAAAGATAAGATTCACAATCTTCGATC
66 TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGAAAGACAAGATTCACAATCTACGATC
* * *
5956 TGCTCCACTACTGCTTCGGGTGACAGAATCTGCAATCTTCAACCTA
131 AGCTCCACTACTGCTTAGGGTCACAGAATCTGCAATCTTCAACCTA
*
6002 CTCCAATACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGA
6023 TAGGACTAAT
Statistics
Matches: 176, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
175 3 0.02
176 171 0.97
177 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (176 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCAACAACTGCTTAGGGTGA
TAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGAAAGACAAGATTCACAATCTACGATC
AGCTCCACTACTGCTTAGGGTCACAGAATCTGCAATCTTCAACCTA
Found at i:8311 original size:132 final size:132
Alignment explanation
Indices: 8074--9585 Score: 2120
Period size: 132 Copynumber: 11.5 Consensus size: 132
8064 NNNNNNNNNN
* * * * *
8074 CTAATGGCTTACATCTGCTTCTCCACTCTCTTGAGAAGA-AATGATTCACCATCTTCGATCCGCT
1 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA-GATTCACCATCTTCGATCTGCT
* * *
8138 GCACTACTGCATAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTAGTGCTTAGGATGATA
65 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATA
8203 GGA
130 GGA
* *
8206 CTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATTTTCGATCTGCTC
1 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC
* *
8271 CACTACTGCTTAGGGTGACAGAATCCGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
66 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAG
8336 GA
131 GA
* * *
8338 CTAATGGCTTAAATCTGCTTCTCCACTGTACTGGGAAGATAAGATTCATCATATTTC-ATCTGCT
1 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCAT-CTTCGATCTGCT
* * **
8402 CCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCTATTTGACTACTGCTTAAGGA-GAT
65 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT-AGGATGAT
8466 AGGA
129 AGGA
* * * ** *
8470 CTAATGGCTTAAATCTTCTTCTCCACTGCATTGGGAAGATAAGATTTATTATATTCGATCTGCTC
1 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC
*
8535 CACTACTGCTTAGGGTGACAGAATCTGAAATCTTCAACCTACTCCACTACTGCTTAGGGA-GATA
66 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA-GGATGATA
8599 GGA
130 GGA
* *
8602 CTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAATATAAGATTCACCATCTTCGATCTGCTC
1 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC
* *
8667 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACTTACTCCACTACTGCTTAGGCTGATAG
66 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAG
8732 GA
131 GA
* * *
8734 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTTGATCTGCTC
1 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC
* * * *
8799 CACTACTGTTTAGGGTGACAGAATCTGCAAACTTTAACCTACTCCACTACTGCTTAGGGA-GATT
66 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA-GGATGATA
**
8863 CAA
130 GGA
* * ** * * * *
8866 CTAATGACTTACATCTGCTTCTCCACAATCTTGAGAAGATATGATTCACCATCTTCGATCTGCTG
1 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC
* * * *
8931 CACAACTGCTTAGGGTGACAAAATCTGCATTCTTCAACCTACTCCACTACTGCTTAGGATCATAG
66 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAG
8996 GA
131 GA
* * *
8998 CTAATGACTGAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATTTTCGATCTGCTC
1 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC
* *
9063 CACTACTGCTTAGGTTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
66 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAG
9128 GA
131 GA
* * * * * * *
9130 CTAATGGCTTAAATTTGCTTCTCCACTGTATTTGTAAGATAAGATGCATCATATTTGATCTGCTC
1 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC
* * * * * *
9195 CACTACTGTTTAGGGTGACAGAATCTGTAATCTTCTACCTACTCGACTACTGCTTTGGGA-GATT
66 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC-TTAGGATGATA
*
9259 GGT
130 GGA
* * * *
9262 CTTATGGCTTAAATCTACTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTC
1 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC
* * *
9327 CACTACTGCTTAGGGTGACAAAATCTGCAATCTTCAACCTATTCGACTACTGCTTAGGGA-GATA
66 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA-GGATGATA
9391 GGA
130 GGA
* * * * *
9394 CTAATGGCTTAAATCTTCTTCTCCACTTTATTGGGAAGATAAGATTTATCATATTCGATCTGCTC
1 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC
* * *
9459 TACTACTGCATAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATCATAG
66 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAG
9524 GA
131 GA
* * *
9526 CTAATGACTGAAATATGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
1 CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
9586 GGCACACAGG
Statistics
Matches: 1218, Mismatches: 151, Indels: 22
0.88 0.11 0.02
Matches are distributed among these distances:
131 14 0.01
132 1189 0.98
133 15 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
CTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC
CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAG
GA
Found at i:12145 original size:44 final size:44
Alignment explanation
Indices: 12090--12286 Score: 152
Period size: 44 Copynumber: 4.5 Consensus size: 44
12080 CTTCGATCTG
12090 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* * * * *
12134 CTCCACCACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTA
* * * * * * * * * * *
12177 CTTCTCCACTG-TATTGGGAAGATAAGATTC-ACAATCTTCGATCTG
1 CTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAACCTA
*
12222 CTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
*
12266 CTCAACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGA
12287 TATGACTAAT
Statistics
Matches: 115, Mismatches: 28, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 28 0.24
44 57 0.50
45 21 0.18
46 2 0.02
47 3 0.03
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
Found at i:12246 original size:132 final size:132
Alignment explanation
Indices: 12008--12935 Score: 1426
Period size: 132 Copynumber: 7.0 Consensus size: 132
11998 NNNNNNNNNN
* * *
12008 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTTTATTTGGAAGATAATAT
1 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
12073 TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
66 TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
12138 AC
131 AC
* *
12140 CACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGAT
1 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
* * *
12205 TCACAATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCA
66 TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
12270 AC
131 AC
* * *
12272 TACTGCTTAGGGTGATATGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGAGAAGATAGGAT
1 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
* *
12337 TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATATGAAATCTTCAACCTACTCC
66 TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
*
12402 AG
131 AC
* * *
12404 TACTGCTTAAGGTGATAGGACTAATGGCTTAAATTTGTTTCTCCACTGTATTGGGAAGATAAGAT
1 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
* *
12469 TCATCATCTTCGATCTGCTCCACTACTGGC-TAGGGTGACAGAATCTGCAATCTTTAACCTACTC
66 TCACCATCTTCGATCTGCTCCACTACT-GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTC
12533 CAC
130 CAC
* * * * *
12536 TACTGCTGACGGAGATAGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTGGGAATATAAGAT
1 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
* * * *
12601 TCACAGATCTTCGATCTGCTCTACTACTGCTTAGGGTGACAGAATCTGTAATCTTCATCCTACTC
66 TCAC-CATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTC
12666 CAC
130 CAC
* * *
12669 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTCCTCCACTATATTGGGAAGCTAAGAT
1 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
* * *
12734 TCACGATCTTCGATATGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
66 TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
*
12799 AG
131 AC
* * * * * * *
12801 TACTGCTTAGGGAGATTGGACTAATGGCTTACATCTGCTTCTCCACTATTTTGAGAAGATATGAT
1 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
* * *
12866 TCACCATCTTCGATCCGCTCCACTACTGTTTAGGGTGATAGAATCTGCAATCTTCAACCTACTCC
66 TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
12931 AC
131 AC
12933 TAC
1 TAC
12936 NNNNNNNNNN
Statistics
Matches: 724, Mismatches: 69, Indels: 6
0.91 0.09 0.01
Matches are distributed among these distances:
132 606 0.84
133 118 0.16
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (132 bp):
TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGAT
TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
AC
Found at i:14533 original size:132 final size:131
Alignment explanation
Indices: 14285--14616 Score: 475
Period size: 132 Copynumber: 2.5 Consensus size: 131
14275 NNNNNNNNNN
* *
14285 ATCTTCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCATCACTACTGGTTA
1 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCA-CACTACTGCTTA
* * * *
14350 GGGTAACAGAATCTGTAATCTTCAACCTACTCCGCTACTGCTTAGGATGATAGGACTAATGGCTT
65 GGGCAACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGACTT
14415 AA
130 AA
* * * *
14417 ATTTGTTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTACACTACTGCTGA
1 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-ACACTACTGCTTA
* * *
14482 GGGCGACAGAATCTGCAATCTTCAACCTTCTCCACTACTGCTTAGGGTGATAGGACTAATGACTT
65 GGGCAACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGACTT
14547 AA
130 AA
* * * * *
14549 ATCTGCTTCTGCACTCTTTTGGGAACATAAGATTCACCATCTTCGATCTGCGCCACTACTGCTTA
1 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-ACACTACTGCTTA
14614 GGG
65 GGG
14617 TGATAGCATT
Statistics
Matches: 176, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
132 175 0.99
133 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (131 bp):
ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCACACTACTGCTTAG
GGCAACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGACTTA
A
Found at i:14667 original size:88 final size:88
Alignment explanation
Indices: 14513--14703 Score: 276
Period size: 88 Copynumber: 2.2 Consensus size: 88
14503 TCAACCTTCT
* ** *
14513 CCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTGCACTCTTTTGGGAACATA
1 CCACTACTGCTTAGGGTGATAGCACTAATGACTTAAATCTGCTTCCCCACTCTTTTGGCAACATA
*
14578 AGATTCACCATCTTCGATCTGCG
66 AGATTCACAATCTTCGATCTGCG
* * * *
14601 CCACTACTGCTTAGGGTGATAGCATTAATGGCTTAAATCTGCTTCCCCACTGTATTT-GCAAGAT
1 CCACTACTGCTTAGGGTGATAGCACTAATGACTTAAATCTGCTTCCCCACTCT-TTTGGCAACAT
*
14665 AAGATTCACAATCTTCGATCTGCT
65 AAGATTCACAATCTTCGATCTGCG
14689 CCACTACTGCTTAGG
1 CCACTACTGCTTAGG
14704 ATGACAGAAT
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
88 89 0.97
89 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (88 bp):
CCACTACTGCTTAGGGTGATAGCACTAATGACTTAAATCTGCTTCCCCACTCTTTTGGCAACATA
AGATTCACAATCTTCGATCTGCG
Found at i:14770 original size:220 final size:220
Alignment explanation
Indices: 14384--14839 Score: 651
Period size: 220 Copynumber: 2.1 Consensus size: 220
14374 ACCTACTCCG
* * * * * *
14384 CTACTGCTTAGGATGATAGGACTAATGGCTTAAATTTGTTTCTCCACTGTATTGGGAAGATAAGA
1 CTACTGCTTAGGGTGATAGCACTAATGGCTTAAATCTGCTTCCCCACTGTATTGGCAAGATAAGA
* * * *
14449 TTCACCATCTTCGATCCGCTACACTACTGCTGAGGGCGACAGAATCTGCAATCTTCAACCTTCTC
66 TTCACAATCTTCGATCCGCTACACTACTGCTGAGGACGACAGAATCAGCAATCTTCAACCTACTC
* * * * *
14514 CACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTGCACTCTTTTGGGAACATAA
131 CACCACTGCTTAGGGTGATAGGACTAATGACTTAAATCTACTTCTCCAATCTATTGGGAACATAA
*
14579 GATTCACCATCTTCGATCTGCGCCA
196 GATTCACCATCTTCGATCTCCGCCA
* *
14604 CTACTGCTTAGGGTGATAGCATTAATGGCTTAAATCTGCTTCCCCACTGTATTTGCAAGATAAGA
1 CTACTGCTTAGGGTGATAGCACTAATGGCTTAAATCTGCTTCCCCACTGTATTGGCAAGATAAGA
* * * *
14669 TTCACAATCTTCGATCTGCTCCACTACTGCTTAGGATGACAGAATCAGCAATCTTCAACCTACTC
66 TTCACAATCTTCGATCCGCTACACTACTGCTGAGGACGACAGAATCAGCAATCTTCAACCTACTC
* * * *
14734 TACCACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCAATGTATTGGGAAGATAA
131 CACCACTGCTTAGGGTGATAGGACTAATGACTTAAATCTACTTCTCCAATCTATTGGGAACATAA
*
14799 GATTCACCATCTTCGATCTCCTCCA
196 GATTCACCATCTTCGATCTCCGCCA
* *
14824 CTATTGCTTATGGTGA
1 CTACTGCTTAGGGTGA
14840 CAGAATCTGC
Statistics
Matches: 207, Mismatches: 29, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
220 207 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (220 bp):
CTACTGCTTAGGGTGATAGCACTAATGGCTTAAATCTGCTTCCCCACTGTATTGGCAAGATAAGA
TTCACAATCTTCGATCCGCTACACTACTGCTGAGGACGACAGAATCAGCAATCTTCAACCTACTC
CACCACTGCTTAGGGTGATAGGACTAATGACTTAAATCTACTTCTCCAATCTATTGGGAACATAA
GATTCACCATCTTCGATCTCCGCCA
Found at i:14937 original size:131 final size:132
Alignment explanation
Indices: 14601--14948 Score: 513
Period size: 132 Copynumber: 2.6 Consensus size: 132
14591 TCGATCTGCG
* * * *
14601 CCACTACTGCTTAGGGTGAT-AGCATTAATGGCTTAAATCTGCTTCCCCACTGTATTTGCAAGAT
1 CCACTACTGCTTAGGGTGATAAG-ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* * *
14665 AAGATTCACAATCTTCGATCTGCTCCACTACTGCTTAGGATGACAGAATCAGCAATCTTCAACCT
65 AAGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGATGACAGAATCAGCAATCTTCAACCG
14730 ACT
130 ACT
* * * * *
14733 CTACCACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCAATGTATTGGGAAGATA
1 CCACTACTGCTTAGGGTGATAAGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATA
* *
14798 AGATTCACCATCTTCGATCTCCTCCACTATTGCTTATGG-TGACAGAATCTGCAATCTTCAACCG
66 AGATTCACCATCTTCGATCTCCTCCACTACTGCTTA-GGATGACAGAATCAGCAATCTTCAACCG
14862 ACT
130 ACT
* *
14865 CCACTA-TGCTTAGGATGATAAGACTAATGGCTGAAATCTGCTTCTCCACTGTATTGGGAAGATA
1 CCACTACTGCTTAGGGTGATAAGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATA
14929 AGATTCACCATCTTCGATCT
66 AGATTCACCATCTTCGATCT
14949 GCTCNNNNNN
Statistics
Matches: 193, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
131 73 0.38
132 117 0.61
133 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (132 bp):
CCACTACTGCTTAGGGTGATAAGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATA
AGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGATGACAGAATCAGCAATCTTCAACCGA
CT
Found at i:15296 original size:132 final size:131
Alignment explanation
Indices: 15053--15451 Score: 591
Period size: 132 Copynumber: 3.0 Consensus size: 131
15043 NNNNNNNNNN
*
15053 GACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAT
1 GACAGAATCTGAAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAT
* * * *
15118 CTGCTTCCCCACTGTATTGGGAAGATGAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGG
66 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCA-CATATTTGATCTGCTCCACTACTGCTTAGG
15183 GT
130 GT
* *
15185 GACAGAATCTGAAATCTTCAACCTACTCCAGTACTGCTTAAGGTGATAGGACTAATGGCTTAAAT
1 GACAGAATCTGAAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAT
* * * *
15250 CTGTTTCTCCACTGTTTTGGGATGATAAGATTCATCATATTTGATCTGCTCCACTACTGTTTAGG
66 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCA-CATATTTGATCTGCTCCACTACTGCTTAGG
15315 GT
130 GT
* * * * * *
15317 GACAGAATCTGCAATCTTTAACATACTCCACTACTGCTGAGGGAGATAGCACTAATGGCTTAAAT
1 GACAGAATCTGAAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAT
* *
15382 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACAGATCTTCGATCTGCTCCACTACTGGTTAG
66 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACATAT-TT-GATCTGCTCCACTACTGCTTAG
15447 GGT
129 GGT
15450 GA
1 GA
15452 TAGGACTAAT
Statistics
Matches: 240, Mismatches: 25, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
131 4 0.02
132 210 0.88
133 26 0.11
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (131 bp):
GACAGAATCTGAAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAT
CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACATATTTGATCTGCTCCACTACTGCTTAGGG
T
Found at i:15494 original size:85 final size:84
Alignment explanation
Indices: 15342--15535 Score: 262
Period size: 85 Copynumber: 2.2 Consensus size: 84
15332 CTTTAACATA
* * * * *
15342 CTCCACTACTGCTGAGGGAGATAGCACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAA----TTAAATCTGCTCCTCCACTATATTGGGAAGA
* *
15407 TAAGATTCACAGATCTTCGATCTG
62 TAAGATTCAC-CATCTTCGATATG
* *
15431 CTCCACTACTGGTTAGGGTGATAGGACTAATTAATTCTGCTCCTCCACTATATTGGGAAGATAAG
1 CTCCACTACTGCTTAGGGTGATAGGACTAATTAAATCTGCTCCTCCACTATATTGGGAAGATAAG
15496 ATTCACCATCTTCGATATG
66 ATTCACCATCTTCGATATG
15515 CTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGA
15536 CAGAATCTGC
Statistics
Matches: 95, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
84 31 0.33
85 38 0.40
89 26 0.27
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (84 bp):
CTCCACTACTGCTTAGGGTGATAGGACTAATTAAATCTGCTCCTCCACTATATTGGGAAGATAAG
ATTCACCATCTTCGATATG
Found at i:15519 original size:217 final size:218
Alignment explanation
Indices: 15210--15671 Score: 613
Period size: 217 Copynumber: 2.1 Consensus size: 218
15200 CTTCAACCTA
* * * * * *
15210 CTCCAGTACTGCTTAAGGTGATAGGACTAATGGCTTAAATCTGTTTCTCCACTGTTTTGGGATGA
1 CTCCACTACTGCTTAAGGTGATAGGACTAA--G-TTAAATCTGCTCCTCCACTATATTGGGAAGA
* * * * *
15275 TAAGATTCATCATATTTGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGC-AATCTTTAAC
63 TAAGATTCACCATATTCGATATGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAATCTTCAAC
* *
15339 ATACTCCACTACTGCTGAGGGAGATAGCACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGA
128 ATACTCCACTACTGCTGAGGGAGATAGCACTAATGGCTTAAATCTGCTTCTCCACTATATTGAGA
* *
15404 AGATAAGATTCACAGATCTTCGATCTG
193 AGATAAGATTCAC-CATCTTCGATCCG
* * *
15431 CTCCACTACTGGTTAGGGTGATAGGACTAA-TTAATTCTGCTCCTCCACTATATTGGGAAGATAA
1 CTCCACTACTGCTTAAGGTGATAGGACTAAGTTAAATCTGCTCCTCCACTATATTGGGAAGATAA
* *
15495 GATTCACCATCTTCGATATGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAATCTTCAACCTA
66 GATTCACCATATTCGATATGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAATCTTCAACATA
* * * * * *
15560 CTCCAGTACTGCTTAGGGAGATTGGACTAATGGCTTACATCTGCTTCTCCACTATTTTGAGAAGA
131 CTCCACTACTGCTGAGGGAGATAGCACTAATGGCTTAAATCTGCTTCTCCACTATATTGAGAAGA
*
15625 TATGATTCACCATCTTCGATCCG
196 TAAGATTCACCATCTTCGATCCG
* *
15648 CTCCACTACTGTTTACGGTGATAG
1 CTCCACTACTGCTTAAGGTGATAG
15672 AATCTGCAAT
Statistics
Matches: 211, Mismatches: 29, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
217 107 0.51
218 77 0.36
221 27 0.13
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (218 bp):
CTCCACTACTGCTTAAGGTGATAGGACTAAGTTAAATCTGCTCCTCCACTATATTGGGAAGATAA
GATTCACCATATTCGATATGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAATCTTCAACATA
CTCCACTACTGCTGAGGGAGATAGCACTAATGGCTTAAATCTGCTTCTCCACTATATTGAGAAGA
TAAGATTCACCATCTTCGATCCG
Found at i:16093 original size:132 final size:132
Alignment explanation
Indices: 15431--16393 Score: 1175
Period size: 132 Copynumber: 7.2 Consensus size: 132
15421 CTTCGATCTG
* *
15431 CTCCACTACTGGTTAGGGTGATAGGACTAA----TTA-ATTCTGCTCCTCCACTATATTGGGAAG
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTACA-TCTGCTTCTCCACTATATTGGGAAG
*
15491 ATAAGATTCACCATCTTCGATATGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAATCTTCAA
65 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGC-AATCTTCAA
15556 CCTA
129 CCTA
* * * * *
15560 CTCCAGTACTGCTTAGGGAGATTGGACTAATGGCTTACATCTGCTTCTCCACTATTTTGAGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTACATCTGCTTCTCCACTATATTGGGAAGA
* * * * *
15625 TATGATTCACCATCTTCGATCCGCTCCACTACTGTTTACGGTGATAGAATCTGCAATCTTCAAAT
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTC-AA-
15690 CTTCTACTTA
129 ---C--C-TA
*
15700 CTCCACTACATGCTTAGGGTGATAGGGACTAAATGGCTTACATCTGCTTCTCCAC-AGTATAGGG
1 CTCCACTAC-TGCTTAGGGTGATA-GGACT-AATGGCTTACATCTGCTTCTCCACTA-TAT-TGG
* * *
15764 GAAGATAAGATTTCACGATCTTCGATCTCCTCCACTATTGCTTAGGGTGACAGAATCTGCAATCT
61 GAAGATAAGA-TTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCT
15829 TCAACCTA
125 TCAACCTA
* * * *
15837 CTCCACTATTGCTTTAGGGTGATAGGGACTAATGGCTTTCATCTGCTTCTCCACTGTATAGGGAA
1 CTCCACTACTGC-TTAGGGTGATA-GGACTAATGGCTTACATCTGCTTCTCCACTATATTGGGAA
* * * *
15902 GATAAGATTCATCATATTCGATCTG-TACCACCTACTGTTTAGGGTGACAGAATCTGTAATCTTC
64 GATAAGATTCACCATCTTCGATCTGCT-CCA-CTACTGCTTAGGGTGACAGAATCTGCAATCTTC
15966 AACCTA
127 AACCTA
* * *
15972 CTCCACTAATGCTTAGGGTGATAGGACTAATGGCATAAATCTGCTTCTCCACTATATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTACATCTGCTTCTCCACTATATTGGGAAGA
* * * * *
16037 TAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCCGTAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
16102 TA
131 TA
* * * * * * *
16104 CTCCACTACTACTTTGGGAGATAGGTCTAATGGCTTAAATCTGCTTCTCCACTGTATTGCGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTACATCTGCTTCTCCACTATATTGGGAAGA
* * *
16169 TAAGATTGACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAACCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
16234 TA
131 TA
* * * * **
16236 CTCCACTACTGCTTAGGGAGATTGAACTAATGGCTTACATCTGCTTCTCCACTATCTTCAGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTACATCTGCTTCTCCACTATATTGGGAAGA
* * * * * * *
16301 TAGGATTCACCATCTTCGATATGCTGCACAACTGCTTAGGGTGACAAAATCTACAATCTTGAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
16366 TA
131 TA
* *
16368 CACCGCTACTGCTTAGGGTGATAGGA
1 CTCCACTACTGCTTAGGGTGATAGGA
16394 NNNNNNNNNN
Statistics
Matches: 724, Mismatches: 86, Indels: 45
0.85 0.10 0.05
Matches are distributed among these distances:
129 26 0.04
132 294 0.41
133 140 0.19
134 30 0.04
135 59 0.08
136 29 0.04
137 28 0.04
138 1 0.00
139 1 0.00
140 11 0.02
141 12 0.02
142 6 0.01
143 26 0.04
144 12 0.02
145 49 0.07
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTACATCTGCTTCTCCACTATATTGGGAAGA
TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
TA
Found at i:17892 original size:14 final size:14
Alignment explanation
Indices: 17873--17902 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
17863 CACTACTGTT
17873 TAGGGTGATAGGAC
1 TAGGGTGATAGGAC
17887 TAGGGTGATAGGAC
1 TAGGGTGATAGGAC
17901 TA
1 TA
17903 ATGGCTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.40, T:0.23
Consensus pattern (14 bp):
TAGGGTGATAGGAC
Found at i:18148 original size:132 final size:132
Alignment explanation
Indices: 17911--18182 Score: 420
Period size: 132 Copynumber: 2.1 Consensus size: 132
17901 TAATGGCTGA
* * *
17911 AATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATATGACTAATGGCTTAAATCTGCT
1 AATCTGCAATCTTCAACCTACTCAACAACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCT
* *
17976 TTTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGAC
66 TTTCCACTGTATTGGAAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCTTAGGGTGAC
18041 AG
131 AG
* * * *
18043 AATCTGCAATCTTCAACCTATTCAAGAATTGCTTAGGGTGATAGGACTAATGGCTTACATCTG-T
1 AATCTGCAATCTTCAACCTACTCAACAACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCT
* * *
18107 TTCTCCACTTTATTTGAAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCTTCGGGTGA
66 TT-TCCACTGTATTGGAAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCTTAGGGTGA
18172 CAG
130 CAG
18175 AATCTGCA
1 AATCTGCA
18183 NNNNNNNNNN
Statistics
Matches: 127, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
131 3 0.02
132 124 0.98
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
AATCTGCAATCTTCAACCTACTCAACAACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCT
TTTCCACTGTATTGGAAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCTTAGGGTGAC
AG
Found at i:29910 original size:132 final size:132
Alignment explanation
Indices: 29669--33753 Score: 5764
Period size: 132 Copynumber: 31.0 Consensus size: 132
29659 NNNNNNTGTA
* * * * * *
29669 CAATCTTCAACCTACTCCACTACTGCTTAGGGAGATTGCACTAATGGCTTACATTTGCTTCTCAA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * * * * * * *
29734 CTATCTTGAGAAGATATGATTCACCATCTTCGTTCAGCTGCACTACTGCTTAGGGTGACAAAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
*
29799 TA
131 TG
* * * * * *
29801 CAATCTTAAACCTACTCCACTACTACTTATGGTGATAGGACTAATGACTTCATTCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* *
29866 CTATATTGGGAAGATAAGATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
*
29931 TA
131 TG
*
29933 CAATCTTCAACCTTCTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * * * *
29998 CTGTATTAGGAAGATAAGATTAACAATCTTCGATCTGCTCCACTACTGTTTAAGGTGACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
30063 TG
131 TG
* * * * * * *
30065 TAATCTTCAACCTATTACACTACTACTTAGGGAGATAGGTCTAATGGCTTAAATATGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
*
30130 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGGTTAGGGTGACAGAAT
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAAT
30194 CTG
130 CTG
* * * *
30197 CAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATATGCTTCTCTA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * * * *
30262 ATGTATTCGGAAGATAAGATTCACCATCTTCGATCTCCTTCACTACTCCTTAGGGTGACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
30327 TG
131 TG
* * * *
30329 CAATCTTCAACCTACTCCAGTACTGCTTATGGTGA-ATGGACTAATGGCTTAAATCTGTTTCTTC
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCC
* * * * *
30393 ACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTAATGTTTACGGTGACAGAAT
65 ACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAAT
30458 CTG
130 CTG
* * *
30461 TAATCTTCAACCTACTACACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCT
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * * *
30526 CTGTATTAGGAAGATAAGATTAACCACCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
30591 TG
131 TG
* * *
30593 CAATCTTGAA-CTGACTCCACTACTTCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCC
1 CAATCTTCAACCT-ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCC
*
30657 ACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAAT
65 ACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAAT
30722 CTG
130 CTG
* * * *
30725 TAATCTTCAACCTACTCCACCACTGCTTAGGATGATAGGACTAATTGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * * *
30790 CTGTATTGGGAATATAAGATTCACCATCTTCAATCTGCTTCACTACTGGTTAGGGTGACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
30855 TG
131 TG
* * * *
30857 CAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAGTGGCTTAAATCTCCTTGTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
30922 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
*
30987 CG
131 TG
* *
30989 CAATCTTCAACCTACTCTACTACCGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
*
31054 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGGTTAGGGTGACAGAAT
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAAT
*
31118 CTA
130 CTG
* * *
31121 CAATCGTCAA-CTGACTCCACTACTGCTTAGGATGATAGGACTAATGCCTTAAATCTGCTTCTCC
1 CAATCTTCAACCT-ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCC
*
31185 A-TGGTATTGGGAAGATCAA-ATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGA
65 ACT-GTATTGGGAAGAT-AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGA
31248 ATCTG
128 ATCTG
* * *
31253 CAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACGAATGGCTGAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * * * * * *
31318 TTGTATTGGGAAGATAAGAGTCACTATCTTCCATCTGCTCCACTATTACGTAGGGTGACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
31383 TG
131 TG
* *
31385 CAATCGTCAACCTACTCCACTACTGCTT-GGGTGATAGGACTAATGACTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * * * *
31449 CTGTATTGGGAATATAAGATTCACCATCTTCGATCTGCTCCTCTACCGCTTAAGGTGAAAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
31514 TG
131 TG
* * *
31516 CAATTTTCAACCTACTCTACTACTGCTTAGGGTGATAGGACAAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
*
31581 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGGTTAGGGTGACAGAAT
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAAT
31645 CTG
130 CTG
* * * * **
31648 CAATCTTCAACCGACTCCATTGCTGCTTAGGGTGATAGGACTAGTGGCTTCTATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
31713 CTGTATTGGGAAGATAAGATTCACCATCTTCGATC-GCTCCACTACTGCTTAGGGTGACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
31777 TG
131 TG
*
31779 CAATCTTCAACCTACTCTACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* *
31844 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGGTTAGAGTGACAGAAT
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAAT
31908 CTG
130 CTG
* * *
31911 TAATCTTCAACCGACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
*
31976 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGAGTGACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
32041 TG
131 TG
* * *
32043 CAATCTTTAACCTACTCCAGTACTGCTTAGGGTGATAGCACTAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* ** * * * *
32108 CTGTATGGGGAAGATAAGATTCATTATATTCGATCAGCTCCACTACTGTTTAGGGTGGCAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
32173 TG
131 TG
* * ** * *
32175 TAATCTGCAACCTACTCCACTACTGCTTAGGAAGATAGGTCTAATGGCTTAAATCTGCTTCTCTA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* *
32240 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTAG-TCCAGTAATGCTTAGGGTG-CAGAAT
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCT-GCTCCACTACTGCTTAGGGTGACAGAAT
*
32303 CTA
130 CTG
** * * * *
32306 CAATCTTCAACCTACTCCACTACTGCTTAGGAAGATTGGACTAATGGCTTACATTTACTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * ** * * *
32371 CTATCTTAAGAAGATATA-ATTGACCATCTTCGATCCGCTGCC-CTACTGCTTAGGGTGACAAAA
66 CTGTATTGGGAAGATA-AGATTCACCATCTTCGATCTGCT-CCACTACTGCTTAGGGTGACAGAA
32434 TCTG
129 TCTG
* * *
32438 CAATCTTCAACCTACTCCACTACTACTTAGGGTGATAGCACTAATGACTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
*
32503 CTATATTGGGAAGATAAGATTCACCATCTTCGATAC-GCTCCACTACTGCTTAGGGTGACAGAAT
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGAT-CTGCTCCACTACTGCTTAGGGTGACAGAAT
32567 CTG
130 CTG
* * * * *
32570 CAATCTTCGACCTACTCCACTACTTCTTAGGGTGATAGGACCAATGGCTTCAATCTACTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* ** * *
32635 CTGTATTGGGAAGATGAGATTCAGTATCTTCGATCTGTTCCACTACTGCTTAGGGGGACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
32700 TG
131 TG
* * *
32702 CAATTTTCAACCTACTCCAGTACTGCTTAGGGTGATAGGACTAACGGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * * * * *
32767 CTGTATTGGGAAGATAAGATTCATCATATTCAAT-TCGCTCCACAACTGTTTAGGGTGACAAAAT
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCT-GCTCCACTACTGCTTAGGGTGACAGAAT
32831 CTG
130 CTG
* * * * * *
32834 TAATCTTCAACCTACTCCACTACTGCTTTGGGAGATAAGTCTAATGGCTTAAATCTGCTTCTCTA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * *
32899 CTGTATTGGGAAGAAAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGATGACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
32964 TG
131 TG
* *
32966 CAATCTTCAACCTACTCCACTACTGCTTAGGGAT-ATTGGACTAATGGCTTACATCTGCTTCTCC
1 CAATCTTCAACCTACTCCACTACTGCTTAGGG-TGATAGGACTAATGGCTTAAATCTGCTTCTCC
* ** * * * * * * *
33030 ACTATCCTGAGAAGGTATGATTCACCATCTTCGAACCGCTGCATTACTGCTTAGGGTGACAGAAT
65 ACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAAT
33095 CTG
130 CTG
* *
33098 CAATCTTCAACCTACTCCACTACTGGTTAGGGTAATAGGACTAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * * * *
33163 CTATATTGGGAAGATAAGATTCACAATCTTCAATCTACTCCACTACTGCTTAGGATGACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
33228 TG
131 TG
* * * *
33230 TAATCTTCAACCGACTCCACTACTGTTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * *
33295 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCACAACTGCTTAGGGTAACAGAATC
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
33360 TG
131 TG
* *
33362 CAATCTTCAACCTACTCAACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATTTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * * *
33427 CTGTATTGGGAAGATAAGAATCATCATATTCGATCTGC-CTCACTACTGTTTAGGGTGACAGAAT
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC-CACTACTGCTTAGGGTGACAGAAT
33491 CTG
130 CTG
* * * * *
33494 CAATCCTGAACCAACTCCACT-GTGGCTTAGGGAT-ATAGGACTAATGGCTTAAATCTGCTTTTC
1 CAATCTTCAACCTACTCCACTACT-GCTTAGGG-TGATAGGACTAATGGCTTAAATCTGCTTCTC
33557 CACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAA
64 CACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAA
33622 TCTG
129 TCTG
* * *
33626 CAATCTTCAGCCTACTCCACTGCTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
* * * * * * *
33691 CTGTATTGGGACGATAAGATTCACAATCTTCAACCTACTCCACCACTGCTTAGGGTGAAAGAA
66 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAA
33754 CTAATGGCTT
Statistics
Matches: 3500, Mismatches: 414, Indels: 78
0.88 0.10 0.02
Matches are distributed among these distances:
130 2 0.00
131 360 0.10
132 3120 0.89
133 18 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
TG
Found at i:33128 original size:44 final size:44
Alignment explanation
Indices: 33074--33260 Score: 118
Period size: 44 Copynumber: 4.2 Consensus size: 44
33064 ACCGCTGCAT
33074 TACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC
1 TACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC
* * * * * *
33118 TACTGGTTAGGGTAATAGGA-CT--AATGGCTTAAATCTGCTTCTCCAC
1 TACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAA-C--CTACTCCAC
* * * * * *
33164 TA-T-ATT-GGGAAGATAAGATTC-ACAATCTTCAATCTACTCCAC
1 TACTGCTTAGGG-TGA-CAGAATCTGCAATCTTCAACCTACTCCAC
* * *
33206 TACTGCTTAGGATGACAGAATCTGTAATCTTCAACCGACTCCAC
1 TACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC
*
33250 TACTGTTTAGG
1 TACTGCTTAGG
33261 ATGATAGGAC
Statistics
Matches: 104, Mismatches: 25, Indels: 28
0.66 0.16 0.18
Matches are distributed among these distances:
41 3 0.03
42 10 0.10
43 16 0.15
44 51 0.49
45 10 0.10
46 11 0.11
47 3 0.03
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (44 bp):
TACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC
Found at i:33728 original size:88 final size:88
Alignment explanation
Indices: 33626--33798 Score: 274
Period size: 88 Copynumber: 2.0 Consensus size: 88
33616 ACAGAATCTG
* ** * *
33626 CAATCTTCAGCCTACTCCACTGCTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
1 CAATCTTCAACCTACTCCACCACTGCTGAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
*
33691 CTGTATTGGGACGATAAGATTCA
66 CTGTATTGGGAAGATAAGATTCA
* *
33714 CAATCTTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTTCTTCTCCA
1 CAATCTTCAACCTACTCCACCACTGCTGAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
33779 CTGTATTGGGAAGATAAGAT
66 CTGTATTGGGAAGATAAGAT
33799 GCATCATATT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 77 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (88 bp):
CAATCTTCAACCTACTCCACCACTGCTGAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
CTGTATTGGGAAGATAAGATTCA
Found at i:33782 original size:220 final size:220
Alignment explanation
Indices: 33533--34154 Score: 992
Period size: 220 Copynumber: 2.8 Consensus size: 220
33523 GGGATATAGG
* * *
33533 ACTAATGGCTTAAATCTGCTTTTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
1 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCT
*
33598 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTGCTGCTGAGGGTGATA
66 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTACTGCTGAGGGTGATA
33663 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACGATAAGATTCACAATCTTCAACCTA
131 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACGATAAGATTCACAATCTTCAACCTA
33728 CTCCACCACTGCTTAGGGTGAAAGA
196 CTCCACCACTGCTTAGGGTGAAAGA
* *
33753 ACTAATGGCTTAAATCTTCTTCTCCACTGTATTGGGAAGATAAGATGCATCATATTCGATCTGCT
1 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCT
* * *
33818 CCACTACTACTTAGGGTGACAGAATCTGCAATCTTCTGCCTACTCCACTACTGTTGAGGGTGATA
66 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTACTGCTGAGGGTGATA
* *
33883 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACTATAAGATTCAAAATCTTCAACCTA
131 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACGATAAGATTCACAATCTTCAACCTA
*
33948 CTCCACCACTGCTTAGGGTGATAGA
196 CTCCACCACTGCTTAGGGTGAAAGA
* * *
33973 ACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTACA
1 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCT
* * ** * * * * *
34038 CCACTACTGTTTAGGGTGACAAAATCTATAATATTTAACCTACTCCACTACTGCTCAGGGAGATA
66 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTACTGCTGAGGGTGATA
* * * *
34103 GGACTAATGGCTTAAATCTACTTCTCCACTATATTTGGAAGATAAGATTCAC
131 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACGATAAGATTCAC
34155 TCATCTTTTG
Statistics
Matches: 367, Mismatches: 35, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
220 367 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (220 bp):
ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCT
CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCCACTACTGCTGAGGGTGATA
GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGACGATAAGATTCACAATCTTCAACCTA
CTCCACCACTGCTTAGGGTGAAAGA
Found at i:33820 original size:88 final size:88
Alignment explanation
Indices: 33626--33841 Score: 263
Period size: 88 Copynumber: 2.5 Consensus size: 88
33616 ACAGAATCTG
* * ** * * *
33626 CAATCTTCAGCCTACTCCACTGCTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
1 CAATATTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
* *
33691 CTGTATTGGGACGATAAGATTCA
66 CTGTATTGGGAAGATAAGATGCA
* *
33714 CAATCTTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTTCTTCTCCA
1 CAATATTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
33779 CTGTATTGGGAAGATAAGATGCA
66 CTGTATTGGGAAGATAAGATGCA
* * * * * *
33802 TC-ATATTCGATCTGCTCCACTACTACTTAGGGTGACAGAA
1 -CAATATTCAACCTACTCCACCACTGCTTAGGGTGAAAGAA
33842 TCTGCAATCT
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
88 110 0.99
89 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (88 bp):
CAATATTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
CTGTATTGGGAAGATAAGATGCA
Found at i:33941 original size:88 final size:86
Alignment explanation
Indices: 33847--34056 Score: 267
Period size: 88 Copynumber: 2.4 Consensus size: 86
33837 CAGAATCTGC
* *
33847 AATCTTCTGCCTACTCCACTACTGTTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
1 AATCTTC-GCCTACTCCACTACTGTT-AGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCAC
**
33912 TGTATTGGGACTATAAGATTCAA
64 TGTATTGGGAAGATAAGATTCAA
* *
33935 AATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCAC
1 AATCTTC-GCCTACTCCACTACTG-TTAGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCAC
*
34000 TGTATTGGGAAGATAAGATTCAT
64 TGTATTGGGAAGATAAGATTCAA
* * * *
34023 CATATTCGATCTACACCACTACTGTTTAGGGTGA
1 AATCTTCG-CCTACTCCACTACTG-TTAGGGTGA
34057 CAAAATCTAT
Statistics
Matches: 105, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
88 103 0.98
89 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (86 bp):
AATCTTCGCCTACTCCACTACTGTTAGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCACTG
TATTGGGAAGATAAGATTCAA
Found at i:33952 original size:132 final size:132
Alignment explanation
Indices: 33714--33973 Score: 342
Period size: 132 Copynumber: 2.0 Consensus size: 132
33704 ATAAGATTCA
*
33714 CAATCTTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTTCTTCTCCA
1 CAATCTTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
** * * * *
33779 CTGTATTGGGAAGATAAGATGCATCATATTCGATCTGCTCCACTACTACTTAGGGTGACAGAATC
66 CTGTATTGGGAAGATAAGATGCAAAATATTCAACCTACTCCACCACTACTTAGGGTGACAGAATC
33844 TG
131 TG
** * * *
33846 CAATCTTCTGCCTACTCCACTACTG-TTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCC
1 CAATCTTCAACCTACTCCACCACTGCTT-AGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCC
** * * * *
33910 ACTGTATTGGGACTATAAGATTCAAAATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGAA
65 ACTGTATTGGGAAGATAAGATGCAAAATATTCAACCTACTCCACCACTACTTAGGGTGACAGAA
33974 CAAATGGCTT
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
131 2 0.02
132 107 0.98
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
CAATCTTCAACCTACTCCACCACTGCTTAGGGTGAAAGAACTAATGGCTTAAATCTGCTTCTCCA
CTGTATTGGGAAGATAAGATGCAAAATATTCAACCTACTCCACCACTACTTAGGGTGACAGAATC
TG
Found at i:34078 original size:132 final size:132
Alignment explanation
Indices: 33935--34762 Score: 1059
Period size: 132 Copynumber: 6.3 Consensus size: 132
33925 TAAGATTCAA
* * *
33935 AATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* * * *
34000 TGTATTGGGAAGATAAGATTCATCATATTCGATCTACACCACTACTGTTTAGGGTGACAAAATCT
66 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTACACCACTACTGCTTAGGGTGACAGAATCT
**
34065 AT
131 GC
* * * * *
34067 AATATTTAACCTACTCCACTACTGCTCAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCAC
1 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* * * *
34132 TATATTTGGAAGATAAGATTCACTCATCTTTTGATCTACTTA-TACTACTGCTTAGGGTGACAGA
66 TGTATTGGGAAGATAAGATTCAC-CATC-TTCGATCTAC--ACCACTACTGCTTAGGGTGACAGA
34196 ATCTGC
127 ATCTGC
* * *
34202 AATCTTCAACCTAATCTACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTTCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* * * *
34267 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCATCACTACTGATTAGTGTGACAGAATCT
66 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTACACCACTACTGCTTAGGGTGACAGAATCT
34332 GC
131 GC
34334 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* * * * *
34399 TGTATTGGGATGATAAGATTAACCATCTTCGATCTGCTCCACTATTGCTTAGGGTGACAGAATCT
66 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTACACCACTACTGCTTAGGGTGACAGAATCT
34464 GC
131 GC
* * * **
34466 AATCTTCAACCTATTCCAGTACTGCTTTGGGTGATAGGACTAATTACTTAAATCTGCTT-TACCA
1 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCT-CCA
** * * * * * *
34530 CTGTATTGGGAAGATAAGATTCATTATATACGATCTGCTCCACTACTGTTTAGGGTGACAAAATC
65 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACACCACTACTGCTTAGGGTGACAGAATC
*
34595 TGT
130 TGC
* * * * * *
34598 AATCTTCAATCTACTCCACTACTGCTTAGGG-GGTAGGTCTAATGGCTTAAATCTGTTTTTCTAC
1 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* * ** *
34662 TTTATTAGGAAGATAAGATTCACCATCTTCGATCTAGTCCACTAATGCTTAGGGTGACAGAATCT
66 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTACACCACTACTGCTTAGGGTGACAGAATCT
**
34727 AA
131 GC
* *
34729 AATCTTCAACCTACTACACTACTGTTTAGGGTGA
1 AATCTTCAACCTACTCCACTACTGCTTAGGGTGA
34763 CAAAATCTAC
Statistics
Matches: 604, Mismatches: 84, Indels: 16
0.86 0.12 0.02
Matches are distributed among these distances:
131 109 0.18
132 368 0.61
133 11 0.02
134 13 0.02
135 102 0.17
136 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (132 bp):
AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
TGTATTGGGAAGATAAGATTCACCATCTTCGATCTACACCACTACTGCTTAGGGTGACAGAATCT
GC
Found at i:34416 original size:267 final size:263
Alignment explanation
Indices: 33935--34762 Score: 1138
Period size: 267 Copynumber: 3.1 Consensus size: 263
33925 TAAGATTCAA
* * *
33935 AATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGAACAAATGGCTTAAATCTGCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* *
34000 TGTATTGGGAAGATAAGATTCATCATATTCGATCTACACCACTACTGTTTAGGGTGACAAAATCT
66 TGTATTGGGAAGATAAGATTCATCATATTCGATCTGCATCACTACTGTTTAGGGTGACAAAATCT
* * * * *
34065 ATAATATTTAACCTACTCCACTACTGCTCAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCC
131 GTAATCTTCAACCTACTCCACTACTGCTTAGGG-GATAGGACTAATGGCTTAAATCTGCTTCTCC
* * ** *
34130 ACTATATTTGGAAGATAAGATTCACTCATCTTTTGATCTACTTATACTACTGCTTAGGGTGACAG
195 ACTATATTAGGAAGATAAGATTCAC-CATC-TTCGATCTAC-TCCACTAATGCTTAGGGTGACAG
34195 AATCTGC
257 AATCTGC
* * *
34202 AATCTTCAACCTAATCTACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTTCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* * * * *
34267 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCATCACTACTGATTAGTGTGACAGAATCT
66 TGTATTGGGAAGATAAGATTCATCATATTCGATCTGCATCACTACTGTTTAGGGTGACAAAATCT
*
34332 GCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCC
131 GTAATCTTCAACCTACTCCACTACTGCTTAGGG-GATAGGACTAATGGCTTAAATCTGCTTCTCC
* * * * * *
34397 ACTGTATTGGGATGATAAGATTAACCATCTTCGATCTGCTCCACTATTGCTTAGGGTGACAGAAT
195 ACTATATTAGGAAGATAAGATTCACCATCTTCGATCTACTCCACTAATGCTTAGGGTGACAGAAT
34462 CTGC
260 CTGC
* * * **
34466 AATCTTCAACCTATTCCAGTACTGCTTTGGGTGATAGGACTAATTACTTAAATCTGCTT-TACCA
1 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCT-CCA
* *
34530 CTGTATTGGGAAGATAAGATTCATTATATACGATCTGC-TCCACTACTGTTTAGGGTGACAAAAT
65 CTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCAT-CACTACTGTTTAGGGTGACAAAAT
* * * * *
34594 CTGTAATCTTCAATCTACTCCACTACTGCTTAGGGGGTAGGTCTAATGGCTTAAATCTGTTTTTC
129 CTGTAATCTTCAACCTACTCCACTACTGCTTAGGGGATAGGACTAATGGCTTAAATCTGCTTCTC
* * *
34659 TACTTTATTAGGAAGATAAGATTCACCATCTTCGATCTAGTCCACTAATGCTTAGGGTGACAGAA
194 CACTATATTAGGAAGATAAGATTCACCATCTTCGATCTACTCCACTAATGCTTAGGGTGACAGAA
**
34724 TCTAA
259 TCTGC
* *
34729 AATCTTCAACCTACTACACTACTGTTTAGGGTGA
1 AATCTTCAACCTACTCCACTACTGCTTAGGGTGA
34763 CAAAATCTAC
Statistics
Matches: 495, Mismatches: 64, Indels: 8
0.87 0.11 0.01
Matches are distributed among these distances:
263 117 0.24
264 170 0.34
265 8 0.02
266 4 0.01
267 196 0.40
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (263 bp):
AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
TGTATTGGGAAGATAAGATTCATCATATTCGATCTGCATCACTACTGTTTAGGGTGACAAAATCT
GTAATCTTCAACCTACTCCACTACTGCTTAGGGGATAGGACTAATGGCTTAAATCTGCTTCTCCA
CTATATTAGGAAGATAAGATTCACCATCTTCGATCTACTCCACTAATGCTTAGGGTGACAGAATC
TGC
Found at i:34793 original size:44 final size:44
Alignment explanation
Indices: 34699--34802 Score: 138
Period size: 44 Copynumber: 2.4 Consensus size: 44
34689 TTCGATCTAG
* *
34699 TCCACTAATGCTTAGGGTGACAGAATCTAAAATCTTCAACCTAC
1 TCCACTACTGCTTAGGGTGACAAAATCTAAAATCTTCAACCTAC
* * * *
34743 TACACTACTGTTTAGGGTGACAAAATCTACAATCTTCAA-TTAAC
1 TCCACTACTGCTTAGGGTGACAAAATCTAAAATCTTCAACCT-AC
34787 TCCACTACTGCTTAGG
1 TCCACTACTGCTTAGG
34803 ATGATAGGAC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 1 0.02
44 50 0.98
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (44 bp):
TCCACTACTGCTTAGGGTGACAAAATCTAAAATCTTCAACCTAC
Found at i:34902 original size:176 final size:175
Alignment explanation
Indices: 34570--34925 Score: 468
Period size: 176 Copynumber: 2.0 Consensus size: 175
34560 CGATCTGCTC
** *
34570 CACTACTGTTTAGGGTGACAAAATCTGTAATCTTCAATCTACTCCACTACTGCTTAGGGGGTAGG
1 CACTACTGTTTAGGGTGACAAAATCTACAATCTTCAATCTACTCCACTACTGCTTAGGGGATAGG
* * * * * *
34635 TCTAATGGCTTAAATCTGTTTTTCTACTTTATTAGGAAGATAAGATTCACCATCTTCGATCTAGT
66 ACTAATGCCTTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATTCACCATCTTCGATCTAGT
* *
34700 CCACTAATGCTTAGGGTGACAGAATCTAAAATCTTCAACCTACTA
131 CCACTAATGCTTAGGGTGACAGAATCTAAAATCTGCAACCGACTA
*
34745 CACTACTGTTTAGGGTGACAAAATCTACAATCTTCAAT-TAACTCCACTACTGCTTAGGATGATA
1 CACTACTGTTTAGGGTGACAAAATCTACAATCTTCAATCT-ACTCCACTACTGCTTAGG-GGATA
* *
34809 GGACTAATGCCTTAAATCTGCTTCTCCA-TGGTATTGGGAAGATCAGATTCACCATCTTCGATCT
64 GGACTAATGCCTTAAATCTGCTTCTCCACT-GTATTAGGAAGATAAGATTCACCATCTTCGATCT
* * ** *
34873 -G-CATCACTACTGTTTAGGGTGACAGAATCTGCAATCTGCAACCGACTC
128 AGTC--CACTAATGCTTAGGGTGACAGAATCTAAAATCTGCAACCGACTA
34921 CACTA
1 CACTA
34926 GTTCTTAGGA
Statistics
Matches: 157, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
174 2 0.01
175 56 0.36
176 99 0.63
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (175 bp):
CACTACTGTTTAGGGTGACAAAATCTACAATCTTCAATCTACTCCACTACTGCTTAGGGGATAGG
ACTAATGCCTTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATTCACCATCTTCGATCTAGT
CCACTAATGCTTAGGGTGACAGAATCTAAAATCTGCAACCGACTA
Found at i:34908 original size:132 final size:132
Alignment explanation
Indices: 34745--36366 Score: 2369
Period size: 132 Copynumber: 12.3 Consensus size: 132
34735 CAACCTACTA
* * * * *
34745 CACTACTGTTTAGGGTGACAAAATCTACAATCTTCAA-TTAACTCCACTACTGCTTAGGATGATA
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTGATA
* *
34809 GGACTAATGCCTTAAATCTGCTTCTCCA-TGGTATTGGGAAGATCAGATTCACCATCTTCGATCT
65 GGACTAATGGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGATAAGATTCACCATCTTCGATCT
34873 GCAT-
129 GC-TC
* * * * * *
34877 CACTACTGTTTAGGGTGACAGAATCTGCAATCTGCAACCGACTCCACTAGTTCTTAGGATGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
*
34942 GACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
35007 TC
131 TC
* * * *
35009 CACTACTGCTTAGGGTGACAGAATCCGCAATATTTAACCTACTCAACTACTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * *
35074 GACAAACGACTTAAATCTGCTT-TCCAC-GATATTGGGAAGATAAGATTCACCATCTTCGATCTA
66 GACTAATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACCATCTTCGATCTG
35137 CTC
130 CTC
*
35140 CACTACTGCTTAGGGTGACAGAATCTGCAACCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* *
35205 GATTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCTATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
35270 AT-
131 -TC
* * * * *
35272 CACTACTGGTTAGGGTGTCAGAATCTGAAATCTTCAACCGACTCCACTATTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * *
35337 GACTAGTGGCTTAAATCTCCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
35402 TC
131 TC
* * * *
35404 CAATACTGCTTAGGGTGACAGAATCCGCAATCTTCAACCTACTCTACTACTGCATAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
35469 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
35534 AT-
131 -TC
* * * * *
35536 CACTACTGGTTAGCGTGACAGAATCTGCAATTTTTAACCTACTCCACTACTGCTTAGGGTGAGAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
** * *
35601 GAAAAATGGCTTAAATCTGCTTCTCCACTGTATTGGAAAGATAAGATTAACCATCTTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
35666 TC
131 TC
* ** *
35668 CACTACTGCTTGGGGTGACAGAATCTGCAATCTTCAACCTACTCCGGTACTGCTTTGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* ** * *
35733 GACTAATGCCTTAAAGGTACTTCTCCA-TGGTATTGGGAAGATCAGATTCACCATCTTCGATCTG
66 GACTAATGGCTTAAATCTGCTTCTCCACT-GTATTGGGAAGATAAGATTCACCATCTTCGATCTG
*
35797 CAC
130 CTC
* *
35800 CACTACTCCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* *
35865 GACGAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACGATCTTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
35930 TC
131 TC
*
35932 CACTACTGCTTAAGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * * * * *
35997 GACCAATGACTTAAATCTGTTTCTCCACTGTATTGGGTATATAAGATTCACAATCTTCGATCTTC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
36062 TC
131 TC
* ** * * * *
36064 CTCTACTGCTTAATGTGACAGAATCTGTAATTTTAAACCTACTCCACTACTACTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * *
36129 GACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
36194 TC
131 TC
* * * *
36196 CACTGCTGTTTAGGGTGACTGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
36261 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
*
36326 TT
131 TC
*
36328 CACTACTGGTTAGGGTGACAGAATCTGCAATCTTCAACC
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
36367 GACTNNNNNN
Statistics
Matches: 1331, Mismatches: 147, Indels: 24
0.89 0.10 0.02
Matches are distributed among these distances:
130 1 0.00
131 123 0.09
132 1202 0.90
133 5 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
TC
Found at i:37669 original size:132 final size:132
Alignment explanation
Indices: 37397--38170 Score: 1043
Period size: 132 Copynumber: 5.8 Consensus size: 132
37387 CTTATCCACT
* * * * *
37397 TCTGCTTCTCC-CCATTTTGGGAAAGGATAAGATTCACCATCTTCGATATACTCCATTACTGCTT
1 TCTGCTTCTCCACTATATTGGG-AA-GATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
* * * * * *
37461 AGGGGTGACAAAATCTTCAATCTTCAACCTACTCCACTACTGCTTAGAGAGATTGAACTAATGGC
64 A-GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
*
37526 TTACA
128 TTAAA
* * * * * * *
37531 TCTGCTTCTCCACTATCTTGAGAAAATATGATTCACCATCTTCGATCCGCTGCACAACTGCTTAG
1 TCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* *
37596 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTG
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
37661 AA
131 AA
* * * * *
37663 TTTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAG
1 TCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
* * * * * *
37728 GGTGACAGAATCTGTAATCTTCAACCGACTCCACTACGGCTTTGGGAGATAGGTCTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
37793 AA
131 AA
* * *
37795 TCTGCTTCTCCACTGTATTGGGAAGATATA-ATTCACCGTCTTCGATCTGGTCCACTACTG-TTG
1 TCTGCTTCTCCACTATATTGGGAAGATA-AGATTCACCATCTTCGATCTGCTCCACTACTGCTT-
* *
37858 AGTGTGACAGAATCTGTAATCTTCAACCTACTCC-CGTACTGCTTAGGGTGATAGGACTAATGGC
64 AGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC-TACTGCTTAGGGTGATAGGACTAATGGC
37922 TTAAA
128 TTAAA
* *
37927 TCTGCTTCTCCCACTATATTAGGAAGATAAGATTCACCATCTTCGAATCTGCTTCACTACTGCTT
1 TCTGCTTCT-CCACTATATTGGGAAGATAAGATTCACCATCTTCG-ATCTGCTCCACTACTGCTT
* *
37992 AGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAGGGTGATAGGACTAGTGGCT
64 AGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCT
38057 TAAA
129 TAAA
* * **
38061 TTTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTGGATCTTATCCACTACTGCTTAG
1 TCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
38126 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
38171 TTGACAGAAT
Statistics
Matches: 564, Mismatches: 67, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
131 3 0.01
132 357 0.63
133 96 0.17
134 99 0.18
135 9 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (132 bp):
TCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
AA
Found at i:38161 original size:44 final size:44
Alignment explanation
Indices: 38111--38218 Score: 207
Period size: 44 Copynumber: 2.5 Consensus size: 44
38101 TTGGATCTTA
38111 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
1 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
*
38155 TCCACTACTGCTTAGGTTGACAGAATCTGCAATCTTCAACCTAC
1 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
38199 TCCACTACTGCTTAGGGTGA
1 TCCACTACTGCTTAGGGTGA
38219 TAGGTCTAAT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (44 bp):
TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
Found at i:38275 original size:176 final size:176
Alignment explanation
Indices: 37981--38350 Score: 575
Period size: 176 Copynumber: 2.1 Consensus size: 176
37971 GAATCTGCTT
*
37981 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * * *
38046 GACTAGTGGCTTAAATTTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTGGATCTTA
66 GACTAATGGCTTAAATCTGCTTCTCCACTATATTGCGAAGATAAGATTCACCATCTTCGATCTGA
*
38111 TCCACTACTGCTT-AGGGTGACAGAATCTGCAATCTTCAACCTACTC
131 TCCACCACTG-TTGAGGGTGACAGAATCTGCAATCTTCAACCTACTC
*
38157 CACTACTGCTTAGGTTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
1 CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * *
38222 GTCTAATTGCTTAAATCTGCTTCTCCACTGTATTGCGAAGATATA-ATTCACCATCTTCGATCTG
66 GACTAATGGCTTAAATCTGCTTCTCCACTATATTGCGAAGATA-AGATTCACCATCTTCGATCTG
* *
38286 GTCCACCACTGTTGAGGGTGACAGAATCTGTAATCTTCAACCTACTC
130 ATCCACCACTGTTGAGGGTGACAGAATCTGCAATCTTCAACCTACTC
38333 C-CGTACTGCTTAGGGTGA
1 CAC-TACTGCTTAGGGTGA
38351 TAGGACTAAT
Statistics
Matches: 177, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
175 3 0.02
176 173 0.98
177 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (176 bp):
CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
GACTAATGGCTTAAATCTGCTTCTCCACTATATTGCGAAGATAAGATTCACCATCTTCGATCTGA
TCCACCACTGTTGAGGGTGACAGAATCTGCAATCTTCAACCTACTC
Found at i:38278 original size:132 final size:132
Alignment explanation
Indices: 38154--39252 Score: 1476
Period size: 132 Copynumber: 8.4 Consensus size: 132
38144 CTTCAACCTA
*
38154 CTCCACTACTGCTTAGGTTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * *
38219 TAGGTCTAATTGCTTAAATCTGCTTCTCCACTGTATTGCGAAGATATA-ATTCACCATCTTCGAT
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATA-AGATTCACCATCTTCGAT
38283 CTG
130 CTG
* * *
38286 GTCCACCACTG-TTGAGGGTGACAGAATCTGTAATCTTCAACCTACTCC-CGTACTGCTTAGGGT
1 CTCCACTACTGCTT-AGGGTGACAGAATCTGCAATCTTCAACCTACTCCAC-TACTGCTTAGGGT
* *
38349 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAGGAAGATAAGATTCACCATCTTCGA
64 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
38414 TCTG
129 TCTG
* *
38418 CTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
** ** * * * * * *
38483 TAGG--TTGTCGG-TGGACTGTTGCCCTCCCCACTATATTGGGAAGATAAGATTCACCATATTCG
66 TAGGACTAAT-GGCTTAAAT-CTG-CTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
*
38545 ATCTA
128 ATCTG
*
38550 CTCCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* *
38615 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
38680 TG
131 TG
* * * * *
38682 CTCCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCATTATTGCTTAGGATGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * *
38747 TAGGACTAATGGCTTAAATATGCTTCTCCAATGTATTGGGACGATAAGATTCACCATCTTCGA--
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
38810 T-
131 TG
* *
38811 CT--ACT-C--CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAAGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * * * *
38871 -ATGGACAAATGGCTTAAATCTGTTTCTTCACTGTATTGGGAAGATAAGATTCATCATATTCGAT
66 TA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
38935 CTG
130 CTG
* * * * *
38938 CTCCACTATTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTGCACTACTGTTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
* * *
39003 TAGGACTAATGGCTTAAATCTGCTTCTCCTCTGTATTAGGAAGATAAGATTAACCATCTTCGATC
66 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
39068 TG
131 TG
* * * * *
39070 CTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTGAACCGACTCCACTACTTCTTACGGTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
*
39135 TAGGACTAATGGCTTAAATCTAG-TTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGAT
66 TAGGACTAATGGCTTAAATCT-GCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGAT
*
39199 CAG
130 CTG
* * *
39202 CAT-CACTACTGGTTAAGGTGACAGAATCTGCAATCTTCAACCGACTCCACT
1 C-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACT
39253 NNNNNNNNNN
Statistics
Matches: 846, Mismatches: 98, Indels: 46
0.85 0.10 0.05
Matches are distributed among these distances:
123 1 0.00
124 101 0.12
126 2 0.00
127 5 0.01
129 5 0.01
130 6 0.01
131 8 0.01
132 704 0.83
133 9 0.01
134 5 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC
TG
Found at i:38405 original size:308 final size:311
Alignment explanation
Indices: 37845--38482 Score: 1008
Period size: 308 Copynumber: 2.1 Consensus size: 311
37835 TTCGATCTGG
*
37845 TCCACTACTG-TT-GAGTGTGACAGAATCTGTAATCTTCAACCTACTCCCGTACTGCTTAGGGTG
1 TCCACTACTGCTTAG-GTGTGACAGAATCTGCAATCTTCAACCTACTCCCGTACTGCTTAGGGTG
37908 ATAGGACTAATGGCTTAAATCTGCTTCTCCCACTATATTAGGAAGATAAGATTCACCATCTTCGA
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCCACTATATTAGGAAGATAAGATTCACCATCTTCGA
* *
37973 ATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAG
130 ATCTGCTCCACCACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAG
* * *
38038 GGTGATAGGACTAGTGGCTTAAATTTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTT
195 GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAGGAAGATAAGATTCACCATCTT
* *
38103 GGATCTTATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
260 CGATCTGATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
38155 TCCACTACTGCTTAGGT-TGACAGAATCTGCAATCTTCAACCTACTCCAC-TACTGCTTAGGGTG
1 TCCACTACTGCTTAGGTGTGACAGAATCTGCAATCTTCAACCTACTCC-CGTACTGCTTAGGGTG
* * *
38218 ATAGGTCTAATTGCTTAAATCTGCTTCT-CCACTGTATT-GCGAAGATATA-ATTCACCATCTTC
65 ATAGGACTAATGGCTTAAATCTGCTTCTCCCACTATATTAG-GAAGATA-AGATTCACCATCTTC
* * *
38280 G-ATCTGGTCCACCACTG-TTGAGGGTGACAGAATCTGTAATCTTCAACCTACTCCCGTACTGCT
128 GAATCTGCTCCACCACTGCTT-AGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCT
38343 TAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAGGAAGATAAGATTCACCAT
192 TAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAGGAAGATAAGATTCACCAT
* *
38408 CTTCGATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
257 CTTCGATCTGATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
*
38463 TCCAGTACTGCTTAGG-GTGA
1 TCCACTACTGCTTAGGTGTGA
38483 TAGGTTGTCG
Statistics
Matches: 304, Mismatches: 17, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
307 2 0.01
308 186 0.61
309 30 0.10
310 80 0.26
311 5 0.02
312 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (311 bp):
TCCACTACTGCTTAGGTGTGACAGAATCTGCAATCTTCAACCTACTCCCGTACTGCTTAGGGTGA
TAGGACTAATGGCTTAAATCTGCTTCTCCCACTATATTAGGAAGATAAGATTCACCATCTTCGAA
TCTGCTCCACCACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAGG
GTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAGGAAGATAAGATTCACCATCTTC
GATCTGATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
Found at i:40152 original size:132 final size:131
Alignment explanation
Indices: 39915--40986 Score: 1432
Period size: 132 Copynumber: 8.1 Consensus size: 131
39905 NNNNNNNNNN
* * *
39915 GTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTG
1 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
* *
39980 TAATCTTCAACCTACTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCT-CA
66 CAATCTTCAACCTACTCCACTACTGCTTA-GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
*
40044 TTT
130 -CT
* * * *
40047 GTATTAGGAAGATAAGATTAACCATCTTCGATCTGCTCCACTACTACTTAGGGTGATAGAATCTG
1 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
* * * *
40112 CAATCTTGAACCGACTCCACTACTTCTTACGGTGATAGGACTAATGGCTTAAATCTACTTCTCCA
66 CAATCTTCAACCTACTCCACTACTGCTTA-GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
*
40177 TT
130 CT
**
40179 GTATTGGGAAGATAAGATTCACCATCTTCGATCTATTCCACTACTGCTTAGGGTGACAGAATCTG
1 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
* * * * * *
40244 CAATCTTCAACCTGCTCTACCACTGCTTAGGATGATAGGACTAATTGCTTAAATATGCTTCTCCT
66 CAATCTTCAACCTACTCCACTACTGCTTAGG-TGATAGGACTAATGGCTTAAATCTGCTTCTCCA
40309 CT
130 CT
* * * * * * *
40311 GTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGAGAGAATCTA
1 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
* * * * *
40376 CAATCTTCAACCAACTCCACTA-TGGCTTAGGGAGATAGGACTATTGGCTTAAATCTACTTCTCT
66 CAATCTTCAACCTACTCCACTACT-GCTTA-GGTGATAGGACTAATGGCTTAAATCTGCTTCTCC
40440 ACT
129 ACT
* * * *
40443 GTAATGGGTAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTGAGGGTGACAGAATCTG
1 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
* * * * *
40508 CAATCTTCAACCTACTCCACTACTGCTTAGGAAGATTGGACTAATGGCTTACATTTACTTCTCCA
66 CAATCTTCAACCTACTCCACTACTGCTTAGG-TGATAGGACTAATGGCTTAAATCTGCTTCTCCA
40573 CT
130 CT
* * * * * *
40575 ATCTTGAGAAGATATGATTCACCATCTTCGATCCGCTGCACTACTGCTTAGGGTGACAGAATCTG
1 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
*
40640 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCA
66 CAATCTTCAACCTACTCCACTACTGCTTA-GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
40705 CT
130 CT
* * *
40707 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAAAATTTG
1 GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
* * * *
40772 CAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAATGACTTAACTCTGTTTCTCCA
66 CAATCTTCAACCTACTCCACTACTGCTTAGG-TGATAGGACTAATGGCTTAAATCTGCTTCTCCA
40837 CT
130 CT
* * * *
40839 GTTTTGGGAAGATAAGATTCATCA-CATTCGATCTGCTCCACTACTGTTTAGGGTGAGAGAATCT
1 GTATTGGGAAGATAAGATTCACCATC-TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
*
40903 GCAATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ATGGACTAATGGCTTAAATCTGCTTCTC
65 GCAATCTTCAACCTACTCCACTACTGCTT-AGGTGATA-GGACTAATGGCTTAAATCTGCTTCTC
*
40967 CATT
128 CACT
40971 GTATTGGGAAGATAAG
1 GTATTGGGAAGATAAG
40987 NNNNNNNNNN
Statistics
Matches: 819, Mismatches: 110, Indels: 22
0.86 0.12 0.02
Matches are distributed among these distances:
131 9 0.01
132 800 0.98
133 10 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (131 bp):
GTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
CAATCTTCAACCTACTCCACTACTGCTTAGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
T
Found at i:46945 original size:132 final size:132
Alignment explanation
Indices: 46706--47996 Score: 1547
Period size: 132 Copynumber: 9.8 Consensus size: 132
46696 NNNNNTCATA
* * * *
46706 TTCGATCTGCTTCACTACTGTTTAGGGTGACAGAATCTACAATCTTCAACCAACTCCACTA-TGG
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-G
** *
46770 CTTAGGAAGATAGGACT-ATAGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGGTTCAC
65 CTTAGGGTGATAGGACTAAT-GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCAC
46834 CATC
129 CATC
* * * *
46838 TTCGATCTCCTCCACTATTACTTAGGGTGACAGAATCTGTAATCTTCAACCTACT-CATCTACTG
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCA-CTACTG
* **
46902 CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCAAA
65 CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
46967 ATC
130 ATC
* * *
46970 TTCGATCTGCTCCACTACTGCTTAGGGTGATAGAATCTCCAATCTTCAACCTACTCCAGTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * * * * *
47035 TTAGGGGGATAGGATTAGTGGCTTAAATTTGCTTCTCCATTGTATTGGGAAGATAAGATTCATCG
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
*
47100 TA
131 TC
* * * * * * *
47102 TTCGATCTGCTCAACTACTGTTTAAGGTGGCAGAATCTGTAATCTTCAACCTACTCCACTGCTGA
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * ** * * *
47167 TTTGGGGGATAGGTTTAATGGCTTAAATCTGCTTCTCTACTGTAATGGGTAGATAAGATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
47232 TC
131 TC
* * *
47234 TTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCCGCAATCCTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * * * * * * * * **
47299 TTAGGGAGATTGGGCTAATTGCTTACATTTACTTCTCCACTATCTTGAGAAGATGTGATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
47364 TC
131 TC
* *
47366 TTCGATCCGCTGCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * * *
47431 TTAGGATGATAGGACTGAGGGCTTAAATCTGTTTCTCCACTGTCTTGGGAAGATAAGATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
47496 TC
131 TC
* * * *
47498 TTCGATCTGCAT-CACTACTGGTTAAGGTGATAGAATCTGCAATCTTCAACCGACTCCACTACTG
1 TTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
* * * *
47562 CTTAGGATGATAGGACTAGTGGCATAAATCTGCTTCTCCACTGTATTGGGAAGATAGGATTCACC
65 CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
47627 ATC
130 ATC
* * *
47630 TTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCCGCAATCTTCAACCTACTCCAATACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * * * * *
47695 TTAAGGTGA-ATGGACTTATGGCTTAAATCTGGTTCTCTACTGCATTGGCAAGATAAGATTCATC
66 TTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
*
47759 ATA
130 ATC
* * * * * * *
47762 TTCGAACTGCTCCATTACCGGTTAAGGTGACGGAATCTGCAATCTTCATCCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * * *
47827 TTAAGGTGA-ATGGACTAATGGCTTATATCTGCTTCTCCACTATATTGGGAAGATCAGATTCATC
66 TTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
*
47891 ATA
130 ATC
* * * *
47894 TTCGATATGCTCCACTACTGGTTTAGGGTGACATAATCTGTAATCTTCAACCTACT-CACTACTG
1 TTCGATCTGCTCCACTACT-GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
* *
47958 CTTAAGGTGAATAGGACGT-ATGAC-TAAATCTGCTTCTCC
65 CTTAGGGTG-ATAGGAC-TAATGGCTTAAATCTGCTTCTCC
47997 TCNNNNNNNN
Statistics
Matches: 988, Mismatches: 160, Indels: 22
0.84 0.14 0.02
Matches are distributed among these distances:
131 4 0.00
132 937 0.95
133 45 0.05
134 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (132 bp):
TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
TC
Found at i:49995 original size:132 final size:132
Alignment explanation
Indices: 49750--51049 Score: 1854
Period size: 132 Copynumber: 9.8 Consensus size: 132
49740 NNNNNNNNTA
* *
49750 TATTGGGAAGATAAGATTTACCATCTTCGATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGC
1 TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGC
* * * * *
49815 AATCTTCAACCTACTCCACTACTGCTTTGGGAGATAGGTCTAACGGCTTAAATCTGCTTCTCTAC
66 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
49880 TG
131 TG
* * * *
49882 TATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCAATACTGCTTAGGGTGACAGAATCTGT
1 TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGC
* * *
49947 AATCTTTAACCTACTACACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
66 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
50012 TG
131 TG
* *
50014 TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGT
1 TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGC
* * *
50079 AATCTTCAACCTACTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCTC
66 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
50144 TG
131 TG
* * * *
50146 TATTAGGAAGATAAGATTAACCATCTTTGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGC
1 TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGC
* * * * * *
50211 AATCTTGAA-CTGACTCCACTACTTCTTACGGTGATAGGACTAATGGCTAAAATATACTTCTCCA
66 AATCTTCAACCT-ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
50275 CTG
130 CTG
* *
50278 TATTGGGAAGATAAGGTTCACCATGTTCGATCTAG-TCCACTACTGCTTAGGGTGACAGAATCTG
1 TATTGGGAAGATAAGATTCACCATCTTCGATCT-GCTCCACTACTGCTTAGGGTGACAGAATCTG
* * * * *
50342 CAATCTTCAACCTACTCCACCACTGCTTAGGATGATAGGACTAATTGCTTAAATCTACTTCTCTA
65 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
50407 CTG
130 CTG
* * * * **
50410 TATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTATTTAGGGTGACAGAATCTGC
1 TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGC
* * *
50475 AATCTTCAACCAACTCCACTA-TGGCTTAGGGAGATAGGACTATTGGCTTAAATCTGCTTCTCCA
66 AATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
*
50539 CAG
130 CTG
* * * * *
50542 TATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTACTTAGGGTGACAGAATTTGT
1 TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGC
50607 AATCTTCAACCTACT-CATCTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
66 AATCTTCAACCTACTCCA-CTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
50671 CTG
130 CTG
* * *
50674 TATTGGGAAGATAAGATTCACCATCTTCGATTTGCTCCACTACTGCTTAAGGTGACAGAATATGC
1 TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGC
* * * * *
50739 AGTCTTCAACCTACTCCACTACGGCCTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCAG
66 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
*
50804 TA
131 TG
* * * * * *
50806 TATTGCGAAGATAACATTCACCATCTTCGATCTGCAT-CACTACTGGTTAAGGTTACAGAATCAG
1 TATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTG
* * * *
50870 CAATCTTCAACCGACTCCACTACTGCTTAAGCTGATAGGACTAATGGCTTAAATCTGATTCTCCA
65 CAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCA
50935 CTG
130 CTG
* *
50938 TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGT
1 TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGC
* *
51003 AATCTTCAACCTTCTCCACTACTGCTTAGTGTGATAGGACTAATGGC
66 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
51050 NNNNNNNNNN
Statistics
Matches: 1038, Mismatches: 120, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
131 7 0.01
132 1024 0.99
133 7 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGC
AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
TG
Found at i:51418 original size:132 final size:132
Alignment explanation
Indices: 51153--51744 Score: 755
Period size: 132 Copynumber: 4.5 Consensus size: 132
51143 NNNNNNNTGT
* * * * * * *
51153 TTCTCCACTGTATTGGGATGATAAGATTCATCATATTTGATCTGCTCCACTACTGTTTAGGGTGA
1 TTCTCCAATGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGA
* * * * *
51218 CAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGCCTTAAATTT
66 CAGAATCTGCAATCCTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCT
51283 GC
131 GC
* *
51285 TTCTCTAATGTATTGGGAAGATAAGATTCACCATGTTCGATCTACTCCACTACTGCTTAGGGTGA
1 TTCTCCAATGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGA
* * * * * *
51350 CAGAATCTACAATCCTCAACCTACTCCACTACTGCTTA-GATAGATTGGACAAATGGCTTACATC
66 CAGAATCTGCAATCCTCAACCTACTCCACTACTGCTTAGGGT-GATAGGACTAATGACTTAAATC
51414 TGC
130 TGC
* * * * ** * *
51417 TTCTCCACA-ATCTTGAGAAGATATGATTCACCATCTTCGATCCGCTGCACTACTTCTTAGGGTG
1 TTCTCCA-ATGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTG
* *
51481 ACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGAACTAATGACTTAAATC
65 ACAGAATCTGCAATCCTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATC
51546 TGC
130 TGC
* * * * *
51549 TTCTCCACTCTATTGGGAAGATAAGATTCACCATCTTCGATCT-GTGCCACTACT-TTTAGGGTA
1 TTCTCCAATGTATTGGGAAGATAAGATTCACCATCTTCGATCTACT-CCACTACTGCTTAGGGTG
*
51612 ACAGAATCTGTAA-CCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAAT
65 ACAGAATCTGCAATCC-TCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAAT
51676 CTGC
129 CTGC
* *
51680 TTCTCCACTGTATTGGGAAGATAAAATTCACCATCTTCGATCTGA-TCCACTACTGCTTAGGGTG
1 TTCTCCAATGTATTGGGAAGATAAGATTCACCATCTTCGATCT-ACTCCACTACTGCTTAGGGTG
51744 A
65 A
51745 TAGGACTAAT
Statistics
Matches: 398, Mismatches: 53, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
130 1 0.00
131 121 0.30
132 273 0.69
133 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
TTCTCCAATGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGA
CAGAATCTGCAATCCTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCT
GC
Found at i:51786 original size:88 final size:88
Alignment explanation
Indices: 51637--51832 Score: 356
Period size: 88 Copynumber: 2.2 Consensus size: 88
51627 TTCAACCTAC
51637 TCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
*
51702 AAAATTCACCATCTTCGATCTGA
66 AAAATTCACCATCATCGATCTGA
*
51725 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* *
51790 AAGATTCACCATCATCGATCTGC
66 AAAATTCACCATCATCGATCTGA
51813 TCCACTACTGCTTAGGGTGA
1 TCCACTACTGCTTAGGGTGA
51833 CAGAATGTGC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 104 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (88 bp):
TCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
AAAATTCACCATCATCGATCTGA
Found at i:51846 original size:351 final size:352
Alignment explanation
Indices: 51374--52092 Score: 1009
Period size: 351 Copynumber: 2.0 Consensus size: 352
51364 CTCAACCTAC
* * *
51374 TCCACTACTGCTTA-GATAGATTGGACAAATGGCTTACATCTGCTTCTCCACAATCTTGAGAAGA
1 TCCACTACTGCTTAGGATAGATAGGACAAATGGCTTAAATCTGCTTCTCCACAATATTGAGAAGA
* * * *
51438 TATGATTCACCATCTTCGATCCGCTGCACTACTTCTTAGGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCATCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
* *
51503 TACTCCACTACTGCTTAGGGTGATAGAACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAA
131 TACACCACTACTGCTGAGGGTGATAGAACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAA
* *
51568 GATAAGATTCACCATCTTCGATCT-GTGCCACTACTT-TTAGGGTAACAGAATCTGTAA-CCTTC
196 GATAAGATTCACCATCTTCGATCTCCT-CCACTA-TTCTTAGGGTAACAGAATCTGCAATCC-TC
*
51630 AACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGACTTAAATCTGCTTCTCCACTGTATT
258 AACCTACACCACTACTGCTTAGGGTGATAGGGA-TAATGACTTAAATCTGCTTCTCCACTGTATT
* * *
51694 GGGAAGATAAAATTCACCATCTTCGATCTGA
322 GGAAAGATAAAATCCACCATATTCGATCTGA
* * ** *
51725 TCCACTACTGCTTAGGGT-GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 TCCACTACTGCTTAGGATAGATAGGACAAATGGCTTAAATCTGCTTCTCCACAATATTGAGAAGA
* * *
51789 TAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATGTGCAATCTTCAGCC
66 TAAGATTCACCATCATCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
* * * * * *
51854 TACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATTTTCTTCTCCACTGTATTGGTAA
131 TACACCACTACTGCTGAGGGTGATAGAACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAA
* *
51919 GATAAGATTCACCATCTTTGATCTCCTCCACTATTGCTTAGGGTGACAGAATCTGCAATCCTCAA
196 GATAAGATTCACCATCTTCGATCTCCTCCACTATT-CTTAGGGTAACAGAATCTGCAATCCTCAA
* * *
51984 CCTACACCACTACTTCTTAGGGTGATAGGGATAATGGCTTATATCTGCTTCTCCACTGTATTGGA
260 CCTACACCACTACTGCTTAGGGTGATAGGGATAATGACTTAAATCTGCTTCTCCACTGTATTGGA
* * *
52049 AAGATAACATCCATCATATTCGATCTGC
325 AAGATAAAATCCACCATATTCGATCTGA
*
52077 TCCACTACTGTTTAGG
1 TCCACTACTGCTTAGG
52093 TTGACAAAAT
Statistics
Matches: 324, Mismatches: 38, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
350 2 0.01
351 197 0.61
352 120 0.37
353 5 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (352 bp):
TCCACTACTGCTTAGGATAGATAGGACAAATGGCTTAAATCTGCTTCTCCACAATATTGAGAAGA
TAAGATTCACCATCATCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
TACACCACTACTGCTGAGGGTGATAGAACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAA
GATAAGATTCACCATCTTCGATCTCCTCCACTATTCTTAGGGTAACAGAATCTGCAATCCTCAAC
CTACACCACTACTGCTTAGGGTGATAGGGATAATGACTTAAATCTGCTTCTCCACTGTATTGGAA
AGATAAAATCCACCATATTCGATCTGA
Found at i:51890 original size:483 final size:484
Alignment explanation
Indices: 51229--52226 Score: 1366
Period size: 483 Copynumber: 2.1 Consensus size: 484
51219 AGAATCTGTA
* * * * *
51229 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGCCTTAAATTTGCTTCTCTAAT
1 ATCTTCGATCTACTCCACTACTGCTTAGGGTGATAGGACTAATGCCTTAAATCTGCTTCTCCAAT
**
51294 GTATTGGGAAGATAAGATTCACCATGTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTA
66 GTATTGGGAAGATAAGATTCACCATCATCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTA
* * * *
51359 CAATCCTCAACCTACTCCACTACTGCTTAGATAGATTGGACAAATGGCTTACATCTGCTTCTCCA
131 CAATCCTCAACCTACACCACTACTGCTGAGATAGATAGGACAAATGGCTTAAATCTGCTTCTCCA
* * *
51424 CAATCTTGAG-AAGATATGATTCACCATCTTCGATC-CGCTGCACTACTT-CTTAGGGTGACAGA
196 CAATATTG-GTAAGATAAGATTCACCATCTTCGATCTC-CTCCACTA-TTGCTTAGGGTGACAGA
* *
51486 ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GAACTAATGACTTAAATCTGCT
258 ATCTGCAATCCTCAACCTACACCACTACTGCTTAGGGTGATAGGAA-TAATGACTTAAATCTGCT
* * * *
51550 TCTCCACTCTATTGGGAAGATAAGATTCACCATCTTCGATCTG-TGCCACTACT-TTTAGGGTAA
322 TCTCCACTCTATTGGAAAGATAACATCCACCATATTCGATCTGCT-CCACTACTGTTTAGGGTAA
* * *
51613 CAGAATCTGTAACCTTCAACCTACTCCACTACTGCT-TAGGGTGATAGGACTAATGACTTAAATC
386 CAAAATCTGCAACCTTCAACCTACTCCACTACTGCTCT-GGGAGATAGGACTAATGACTTAAATC
* *
51677 TGCTTCTCCACTGTATTGGGAAGATAAAATTCACC
450 TACTTCTCCACTGTATTGGGAAGACAAAATTCACC
* *
51712 ATCTTCGATCTGA-TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
1 ATCTTCGATCT-ACTCCACTACTGCTTAGGGTGATAGGACTAATGCCTTAAATCTGCTTCTCCAA
* *
51776 TGTATTGGGAAGATAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATGT
65 TGTATTGGGAAGATAAGATTCACCATCATCGATCTACTCCACTACTGCTTAGGGTGACAGAATCT
* * * * * * *
51841 GCAATCTTCAGCCTACACCACTACTGCTGAGGGT-GATAGGACTAATGGCTTAAATTTTCTTCTC
130 ACAATCCTCAACCTACACCACTACTGCTGA-GATAGATAGGACAAATGGCTTAAATCTGCTTCTC
** *
51905 CACTGTATTGGTAAGATAAGATTCACCATCTTTGATCTCCTCCACTATTGCTTAGGGTGACAGAA
194 CACAATATTGGTAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTGCTTAGGGTGACAGAA
* * * *
51970 TCTGCAATCCTCAACCTACACCACTACTTCTTAGGGTGATAGGGATAATGGCTTATATCTGCTTC
259 TCTGCAATCCTCAACCTACACCACTACTGCTTAGGGTGATAGGAATAATGACTTAAATCTGCTTC
* * * *
52035 TCCACTGTATTGGAAAGATAACATCCATCATATTCGATCTGCTCCACTACTGTTTAGGTTGACAA
324 TCCACTCTATTGGAAAGATAACATCCACCATATTCGATCTGCTCCACTACTGTTTAGGGTAACAA
** * *
52100 AATCTGCAGTCTTTAACCTACTCCACTACTGCTCTGGGAGATAGGACTAATGGCTTAAATCTACT
389 AATCTGCAACCTTCAACCTACTCCACTACTGCTCTGGGAGATAGGACTAATGACTTAAATCTACT
* * *
52165 TCTCCTCTGTATTTGGAAGACAAGATTCACC
454 TCTCCACTGTATTGGGAAGACAAAATTCACC
*
52196 ATCTTCGATCTACTTCACTACTGCTTAGGGT
1 ATCTTCGATCTACTCCACTACTGCTTAGGGT
52227 AACAGAATCT
Statistics
Matches: 450, Mismatches: 55, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
482 3 0.01
483 318 0.71
484 128 0.28
485 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (484 bp):
ATCTTCGATCTACTCCACTACTGCTTAGGGTGATAGGACTAATGCCTTAAATCTGCTTCTCCAAT
GTATTGGGAAGATAAGATTCACCATCATCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTA
CAATCCTCAACCTACACCACTACTGCTGAGATAGATAGGACAAATGGCTTAAATCTGCTTCTCCA
CAATATTGGTAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTGCTTAGGGTGACAGAATC
TGCAATCCTCAACCTACACCACTACTGCTTAGGGTGATAGGAATAATGACTTAAATCTGCTTCTC
CACTCTATTGGAAAGATAACATCCACCATATTCGATCTGCTCCACTACTGTTTAGGGTAACAAAA
TCTGCAACCTTCAACCTACTCCACTACTGCTCTGGGAGATAGGACTAATGACTTAAATCTACTTC
TCCACTGTATTGGGAAGACAAAATTCACC
Found at i:51949 original size:132 final size:132
Alignment explanation
Indices: 51725--52674 Score: 1278
Period size: 132 Copynumber: 7.2 Consensus size: 132
51715 TTCGATCTGA
51725 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* * * *
51790 AAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATGTGCAATCTTCAGCCT
66 AAGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
51855 AC
131 AC
* * * * *
51857 ACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATTTTCTTCTCCACTGTATTGGTAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* * *
51922 AAGATTCACCATCTTTGATCTCCTCCACTATTGCTTAGGGTGACAGAATCTGCAATCCTCAACCT
66 AAGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
51987 AC
131 AC
* * * *
51989 ACCACTACTTCTTAGGGTGATAGGGA-TAATGGCTTATATCTGCTTCTCCACTGTATTGGAAAGA
1 TCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * * * * * * * *
52053 TAACATCCATCATATTCGATCTGCTCCACTACTGTTTAGGTTGACAAAATCTGCAGTCTTTAACC
65 TAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
52118 TAC
130 TAC
* * * *
52121 TCCACTACTGCTCT-GGGAGATAGGACTAATGGCTTAAATCTACTTCTCCTCTGTATTTGGAAGA
1 TCCACTACTGCT-TAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * *
52185 CAAGATTCACCATCTTCGATCTACTTCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACC
65 TAAGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
52250 TAC
130 TAC
* * * * * ** *
52253 TCCACTACAGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTCAGAAGAG
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* * * *
52318 AAGATTCACCATCTTCGATC-CACTCTACAACTGCTTAGGGTAACAGAATCTGTAATCTTCAACC
66 AAGATTCACCATCTTCGATCTC-CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
52382 TAC
130 TAC
* *
52385 TCCAGTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* *
52450 AAGATTCACCATCTTCGATC-CGCTCCACAACTGCTTAGGGTAACAGAATCTGCAATCTTCAACC
66 AAGATTCACCATCTTCGATCTC-CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
52514 TAC
130 TAC
* * * *
52517 TCGACTACTGCTTTGGGTGATAGGACCAATGGCTTAAGTCTGCTTCTCCACTGTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* ** * * *
52582 AAGATTCACCATCTTCGATCTGCTCCACTACTATTTAGGTTGACAGAATCTGCAATCTTTAACCG
66 AAGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
52647 AC
131 AC
*
52649 TCCACTACTTCGTTAGGGTGATAGGA
1 TCCACTACTGC-TTAGGGTGATAGGA
52675 NNNNNNNNNN
Statistics
Matches: 717, Mismatches: 94, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
131 4 0.01
132 696 0.97
133 17 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
AAGATTCACCATCTTCGATCTCCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
AC
Found at i:51951 original size:220 final size:219
Alignment explanation
Indices: 51505--51969 Score: 707
Period size: 220 Copynumber: 2.1 Consensus size: 219
51495 CTTCAACCTA
51505 CTCCACTACTGCTTAGGGTGATAGAACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGAACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGA
* * *
51570 TAAGATTCACCATCTTCGATCTGTGCCACTACTTTTAGGGTAACAGAATCTGTAACCTTCAACCT
66 TAAGATTCACCATCATCGATCTGTGCCACTACTCTTAGGGTAACAGAATCTGCAACCTTCAACCT
* *
51635 ACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAG
131 ACACCACTACTGCTGAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAG
*
51700 ATAAAATTCACCATCTTCGATCTG
196 ATAAAATTCACCATCTTCGATCTC
* * * *
51724 ATCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGAACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGA
* * * *
51789 TAAGATTCACCATCATCGATCTGCT-CCACTACTGCTTAGGGTGACAGAATGTGCAATCTTCAGC
66 TAAGATTCACCATCATCGATCTG-TGCCACTACT-CTTAGGGTAACAGAATCTGCAACCTTCAAC
* * * *
51853 CTACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATTTTCTTCTCCACTGTATTGGTA
129 CTACACCACTACTGCTGAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGA
* *
51918 AGATAAGATTCACCATCTTTGATCTC
194 AGATAAAATTCACCATCTTCGATCTC
* *
51944 CTCCACTATTGCTTAGGGTGACAGAA
1 CTCCACTACTGCTTAGGGTGATAGAA
51970 TCTGCAATCC
Statistics
Matches: 220, Mismatches: 24, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
219 91 0.41
220 129 0.59
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (219 bp):
CTCCACTACTGCTTAGGGTGATAGAACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGA
TAAGATTCACCATCATCGATCTGTGCCACTACTCTTAGGGTAACAGAATCTGCAACCTTCAACCT
ACACCACTACTGCTGAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAG
ATAAAATTCACCATCTTCGATCTC
Found at i:51996 original size:615 final size:616
Alignment explanation
Indices: 51153--52337 Score: 1684
Period size: 615 Copynumber: 1.9 Consensus size: 616
51143 NNNNNNNTGT
* * * *
51153 TTCTCCACTGTATTGGGATGATAAGATTCATCATATTTGATCTGCTCCACTACTGTTTAGGGTGA
1 TTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGA
* * *
51218 CAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGCCTTAAATTT
66 CAGAATCTGCAATCTTCAACCTACACCACTACTGCTGAGGGAGATAGGACTAATGCCTTAAATTT
* *
51283 GCTTCTCTAATGTATTGGGAAGATAAGATTCACCATGTTCGATCTACTCCACTACTGCTTAGGGT
131 GCTTCTCCAATGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGT
* *
51348 GACAGAATCTACAATCCTCAACCTACTCCACTACTGCTTA-GATAGAT-TGGACAAATGGCTTAC
196 GACAGAATCTACAATCCTCAACCTACACCACTACTGCTTAGGAT-GATAGGGA-AAATGGCTTAC
* ** * * *
51411 ATCTGCTTCTCCACAATCTT-GAGAAGATATGATTCACCATCTTCGATCCGCTGCACTACT-TCT
259 ATCTGCTTCTCCACAATATTGGA-AAGATAACATCCACCATATTCGATCCGCTCCACTACTGT-T
* *
51474 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT-TAGGGTGATAGAACTAATGA
322 TAGGGTGACAAAATCTGCAATCTTCAACCTACTCCACTACTGCTCT-GGGAGATAGAACTAATGA
* * *
51538 CTTAAATCTGCTTCTCCACTCTATTGGGAAGATAAGATTCACCATCTTCGATCT-GTGCCACTAC
386 CTTAAATCTACTTCTCCACTCTATTGGGAAGACAAGATTCACCATCTTCGATCTACT-CCACTAC
* * * *
51602 T-TTTAGGGTAACAGAATCTGTAACCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAA
450 TGCTTAGGGTAACAGAATCTGCAACCTTCAACCTACTCCACTACAGCTTAGGGAGATAGGACTAA
* ** *
51666 TGACTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAAATTCACCATCTTCGATCTGATCCACT
515 TGACTTAAATCTGCTTCTCCACTATATTCAGAAGAGAAAATTCACCATCTTCGATCTGATCCACT
51731 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGC
580 ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGC
51768 TTCTCCACTGTATTGGGAAGATAAGATTCACCATCA-TCGATCTGCTCCACTACTGCTTAGGGTG
1 TTCTCCACTGTATTGGGAAGATAAGATTCACCAT-ATTCGATCTGCTCCACTACTGCTTAGGGTG
* * * *
51832 ACAGAATGTGCAATCTTCAGCCTACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATT
65 ACAGAATCTGCAATCTTCAACCTACACCACTACTGCTGAGGGAGATAGGACTAATGCCTTAAATT
* * * * * *
51897 TTCTTCTCCACTGTATTGGTAAGATAAGATTCACCATCTTTGATCTCCTCCACTATTGCTTAGGG
130 TGCTTCTCCAATGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGG
* * * * *
51962 TGACAGAATCTGCAATCCTCAACCTACACCACTACTTCTTAGGGTGATAGGGATAATGGCTTATA
195 TGACAGAATCTACAATCCTCAACCTACACCACTACTGCTTAGGATGATAGGGAAAATGGCTTACA
** * *
52027 TCTGCTTCTCCACTGTATTGGAAAGATAACATCCATCATATTCGATCTGCTCCACTACTGTTTAG
260 TCTGCTTCTCCACAATATTGGAAAGATAACATCCACCATATTCGATCCGCTCCACTACTGTTTAG
* * * * *
52092 GTTGACAAAATCTGCAGTCTTTAACCTACTCCACTACTGCTCTGGGAGATAGGACTAATGGCTTA
325 GGTGACAAAATCTGCAATCTTCAACCTACTCCACTACTGCTCTGGGAGATAGAACTAATGACTTA
* * * *
52157 AATCTACTTCTCCTCTGTATTTGGAAGACAAGATTCACCATCTTCGATCTACTTCACTACTGCTT
390 AATCTACTTCTCCACTCTATTGGGAAGACAAGATTCACCATCTTCGATCTACTCCACTACTGCTT
* * *
52222 AGGGTAACAGAATCTGCAATCTTCAACCTACTCCACTACAGCTTAGGGAGATTGGACTAATGGCT
455 AGGGTAACAGAATCTGCAACCTTCAACCTACTCCACTACAGCTTAGGGAGATAGGACTAATGACT
* *
52287 TAAATCTGCTTCTCCACTATCTTCAGAAGAGAAGATTCACCATCTTCGATC
520 TAAATCTGCTTCTCCACTATATTCAGAAGAGAAAATTCACCATCTTCGATC
52338 CACTCTACAA
Statistics
Matches: 499, Mismatches: 63, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
615 382 0.77
616 117 0.23
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (616 bp):
TTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGA
CAGAATCTGCAATCTTCAACCTACACCACTACTGCTGAGGGAGATAGGACTAATGCCTTAAATTT
GCTTCTCCAATGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGT
GACAGAATCTACAATCCTCAACCTACACCACTACTGCTTAGGATGATAGGGAAAATGGCTTACAT
CTGCTTCTCCACAATATTGGAAAGATAACATCCACCATATTCGATCCGCTCCACTACTGTTTAGG
GTGACAAAATCTGCAATCTTCAACCTACTCCACTACTGCTCTGGGAGATAGAACTAATGACTTAA
ATCTACTTCTCCACTCTATTGGGAAGACAAGATTCACCATCTTCGATCTACTCCACTACTGCTTA
GGGTAACAGAATCTGCAACCTTCAACCTACTCCACTACAGCTTAGGGAGATAGGACTAATGACTT
AAATCTGCTTCTCCACTATATTCAGAAGAGAAAATTCACCATCTTCGATCTGATCCACTACTGCT
TAGGGTGATAGGACTAATGGCTTAAATCTGC
Found at i:53141 original size:132 final size:132
Alignment explanation
Indices: 52904--54228 Score: 2023
Period size: 132 Copynumber: 10.0 Consensus size: 132
52894 NNNNNNNNNN
* * *
52904 TTCAACCGACTCCACTATTGCTTAGGATGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTA
1 TTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
* * * * *
52969 TTAGGAAGATAAGATTCACCATCTTCGATCTGCTCTACTACTCCTTAGGGTGACAGAATCCGCTA
66 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
53034 TC
131 TC
* *
53036 TTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCGCCACTGTA
1 TTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
* * * *
53101 TTGGGAAGAGACGATTCACCATATTCGATTTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
66 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
53166 TC
131 TC
53168 TTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
1 TTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
* * *
53233 TTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTGCTGGTTAGGGTGACAGAATATGCA
66 TTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCA
53297 ATC
130 ATC
* * *
53300 TTCAACCAACTCCACTACTGCTTAGGATGATAGGACTAATGGCTAAAATATGCTTCTCCACTGTA
1 TTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
* **
53365 TTGGGAAGATAAGATTCACCATGTTCGATCTGCTCCACTACCCCTTAGGGTGACAGAATCTGCAA
66 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
53430 TC
131 TC
* * * * *
53432 TTCAACCTACTCTAGTACTGCTTAAGG-TGA-ATGGACTAATGGCTTAAATTTGTTTCTTCACTG
1 TTCAACCTACTCCACTACTGCTT-AGGATGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTG
* * ** * *
53495 TATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCGCCGCAGCTTAGGGTGACAGAATCTGT
64 TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGC
53560 AATC
129 AATC
* *
53564 TTCAACCGACTCCTCTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
1 TTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
* *
53629 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGTAA
66 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
53694 TC
131 TC
** * *
53696 TTCAACCTACTCCACTACTGCTTAGGGCGATAGGACTAATGACTTAAA-CTTGCTTCGCCACTGT
1 TTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATC-TGCTTCTCCACTGT
53760 ATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
65 ATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
53825 ATC
130 ATC
* *
53828 TTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGCCTTAAATCTGCTTCTCCACTCTA
1 TTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
* * * *
53893 TTGGGAGGATAAGATTCACCATCTTCGATCTGCAT-TACTGCTGGTTAGGGTGACAGAATCTGCA
66 TTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCA
53957 ATC
130 ATC
*
53960 TTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
1 TTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
* * *
54025 TTAGGAAGATAAGATTCACCATCTTCGATCTGTTCCACTACT-CTTTAGGGTGACAGAATCTGCT
66 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC-TTAGGGTGACAGAATCTGCA
54089 ATC
130 ATC
* * *
54092 TTCAACCTACTCCACTATTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCGCCACTGTA
1 TTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
* * * *
54157 TTGGGAAGATACGATTCACCATATTCAATTTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
66 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
54222 TC
131 TC
54224 TTCAA
1 TTCAA
54229 NNNNNNNNNN
Statistics
Matches: 1083, Mismatches: 98, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
131 7 0.01
132 1068 0.99
133 8 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
TTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
TC
Found at i:53844 original size:44 final size:44
Alignment explanation
Indices: 53661--53853 Score: 126
Period size: 44 Copynumber: 4.4 Consensus size: 44
53651 CTTCGATCTG
* *
53661 CTCCACTACTCCTTAGGGTGACAGAATCTGTAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* * * * * *
53705 CTCCACTACTGCTTAGGGCGATAGGA-CT--AATGACTTAAACTTG
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTA
* * * * * * * * * * * *
53748 CTTCGCCACTG-TATTGGGAAGATAAGATTC-ACCATCTTCGATCTG
1 CTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAACCTA
53793 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
53837 CTCCACTACTGCTTAGG
1 CTCCACTACTGCTTAGG
53854 ATGATAGGAC
Statistics
Matches: 107, Mismatches: 32, Indels: 20
0.67 0.20 0.13
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 26 0.24
44 53 0.50
45 20 0.19
46 2 0.02
47 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
Found at i:54805 original size:132 final size:132
Alignment explanation
Indices: 54340--55707 Score: 1881
Period size: 132 Copynumber: 10.3 Consensus size: 132
54330 ACTTTAATTT
* * * * *
54340 GGAAGAAAAGATTC-CCAATC-TAGATCTGCTCCCCTAC-GCTTAGGGTGA-AGGAATCCGCAAT
1 GGAAGATAAGATTCACC-ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACA-GAATCTGTAAT
* * *
54401 CTTCAACCCACTCCCACTCCTGC-TAAGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
64 CTTCAACCGACT-CCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
54465 TATTG
128 TATTG
* *
54470 GGAAGGATAAGATTCACCAT-TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATT
1 GGAA-GATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATC
* * *
54534 TTCAACCTACTCCCACTA-TCGCTTAGGGGGGATAGGACTAATGGCTTCAAATATGCTTCTCCCA
65 TTCAACCGACT-CCACTACT-GCTTA-GGGTGATAGGACTAATGGCTT-AAATCTGCTTCT-CCA
54598 CTGTATTG
125 CTGTATTG
* * * *
54606 GGAAGATTAGATTCGCCATCTTCGATCTGCATCCAATACTGGTTAGGGTGACAGAATCTGTAATC
1 GGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGTAATC
* *
54671 TTCAACCGACTCCACTATTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTTCACTGTA
65 TTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
54736 TTG
130 TTG
* * * * * * * *
54739 GGAAGATCAGATTTATCATATTCGATCAGCTCCACTACTGTTTAGGGTAACAGAATCTATAATCT
1 GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCT
* *
54804 TCAACCTACTCCACCACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
66 TCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
54869 TG
131 TG
* * *
54871 GGAAGACAAGATTCACCATCTTCGATCTGCAT-CACTATTGGTTAGGGTGACAGAATCTGTAATC
1 GGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGTAATC
* * *
54935 TTCAACTGACTCCACTATTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTTTA
65 TTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
*
55000 TTT
130 TTG
* * * * *
55003 TGAAGATAAGATTCACAATCTTCGATCTGCTGCACTACTGCTTAGGGTGACAAAATCTGCAATCT
1 GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCT
* * *
55068 TCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTATCCACTATAT
66 TCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
55133 TG
131 TG
* * **
55135 GGAAGATAAGATTCACCTTCTTCGATCTGCACCACTACTGCTTAGGGTGACAGAATCTACAATCT
1 GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCT
* * * * *
55200 TCAACCTATTCCAATACTGCTTAGGGTGATAGGACTAAAGGCTTAAATCTGCTTCTCTACTGTAT
66 TCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
55265 TG
131 TG
* * *
55267 GGAAGATAAGATTTATCATCTTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCT
1 GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCT
* *
55332 TCAACCGACTCCAATACTGCTTAGGGTGAGAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
66 TCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
55397 TG
131 TG
* * * * * *
55399 GGAAGATCAGATTTATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTATAATCT
1 GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCT
* * * * *
55464 TCAACCTACTCCACTACTCCTTAGGGAGATAGGTCTAATGGCTTAAA-CTTGCTTCTCTACTGTA
66 TCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATC-TGCTTCTCCACTGTA
55528 TTG
130 TTG
* * *
55531 GGAAGATAAGATTCACCATCTTCGATCTACTCCACCACTGCTTAGGGTGACAGAATCTGCAATCT
1 GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCT
* * * *
55596 TCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTGAAATCTACTTATCCACTATAT
66 TCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
55661 TG
131 TG
55663 GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
1 GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAG
55708 NNNNNNNNNN
Statistics
Matches: 1101, Mismatches: 120, Indels: 32
0.88 0.10 0.03
Matches are distributed among these distances:
130 4 0.00
131 29 0.03
132 878 0.80
133 39 0.04
134 30 0.03
135 44 0.04
136 36 0.03
137 41 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCT
TCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
TG
Found at i:55478 original size:44 final size:44
Alignment explanation
Indices: 55153--55481 Score: 165
Period size: 44 Copynumber: 7.5 Consensus size: 44
55143 AGATTCACCT
* * * *
55153 TCTTCGATCTGCACCACTACTGCTTAGGGTGACAGAATCTACAA
1 TCTTCAATCTGCTCCACTACTGTTTAGGGTGACAGAATCTATAA
* ** * * * *
55197 TCTTCAACCTATTCCAATACTGCTTAGGGTGATAGGA-CTA-AA
1 TCTTCAATCTGCTCCACTACTGTTTAGGGTGACAGAATCTATAA
* * * * * * * *
55239 GGCTTAAATCTGCTTCTCTACTGTATT-GGGAAGATA-AGATTTATCA
1 -TCTTCAATCTGCTCCACTACTGT-TTAGGG-TGACAGA-ATCTATAA
* *
55285 TCTTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAA
1 TCTTCAATCTGCTCCACTACTGTTTAGGGTGACAGAATCTATAA
* * * * *
55329 TCTTCAA-CCGACTCCAATACTGCTTAGGGTGAGAGGA-C--TAA
1 TCTTCAATCTG-CTCCACTACTGTTTAGGGTGACAGAATCTATAA
* * * * * * *
55370 TGGCTTAAATCTGCTTCTCCACTGTATT-GGGAAGATCAG-ATTTATCA
1 T--CTTCAATCTGCTCCACTACTGT-TTAGGG-TGA-CAGAATCTATAA
* *
55417 TATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTATAA
1 TCTTCAATCTGCTCCACTACTGTTTAGGGTGACAGAATCTATAA
* *
55461 TCTTCAACCTACTCCACTACT
1 TCTTCAATCTGCTCCACTACT
55482 CCTTAGGGAG
Statistics
Matches: 204, Mismatches: 61, Indels: 40
0.67 0.20 0.13
Matches are distributed among these distances:
41 4 0.02
42 2 0.01
43 41 0.20
44 108 0.53
45 45 0.22
46 1 0.00
47 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (44 bp):
TCTTCAATCTGCTCCACTACTGTTTAGGGTGACAGAATCTATAA
Found at i:56465 original size:132 final size:131
Alignment explanation
Indices: 56217--56830 Score: 734
Period size: 132 Copynumber: 4.7 Consensus size: 131
56207 AAGATTCACC
* * * *
56217 ATCTTCAATCTGA-TCCACTACTGCTTTGGGTGATCGGCCTAATGGCTTAAATCTGCTTCTCCAC
1 ATCTTCAA-CCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
** * *
56281 TGTA-TAGGGAAGATAAGATTCATGATATTCGATCTGCTCCACT-CATGTTTAGGGTGACAAAAT
65 TGTATTA-GGAAGATAAGATTCACCATCTTCGATCTGCT-CACTAC-TGCTTAGGGTGACAAAAT
56344 CTGCA
127 CTGCA
* * * * * *
56349 ATCTTTAGCCTACTCCGCTACTGCTCT-GGGAGATAGGACTAATGGCTTAAATCTACTTCTCCAC
1 ATCTTCAACCGACTCCACTACTGCT-TAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* * *
56413 TGTATTAGGAAGATAAGATTCACCATCTTCGATCTGCTCTACTACTCCTTAGGGTGACAGAGTCT
65 TGTATTAGGAAGATAAGATTCACCATCTTCGATCTGCTC-ACTACTGCTTAGGGTGACAAAATCT
56478 GCA
129 GCA
* * * * * *
56481 ATCTTCAACCTACTCCACTACAGCTTAGGGAGATTGGACTAATGGCTTAAATTTGGTTCTCCACT
1 ATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * * *
56546 ATCTTAAGAAGATAAGATTCACCATCTTTGATCTGCTACACTACTACTTAGGGTGACAGAATCTG
66 GTATTAGGAAGATAAGATTCACCATCTTCGATCTGCT-CACTACTGCTTAGGGTGACAAAATCTG
56611 CA
130 CA
*
56613 ATCTTTAACCGACTCCACTAC-GTCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
1 ATCTTCAACCGACTCCACTACTG-CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* * * * *
56677 TGTCTTGGGTAGATATGATTCACCATCTTCGATCTACTCGACTACTGCTTAGGGTGACAAAATCT
65 TGTATTAGGAAGATAAGATTCACCATCTTCGATCTGCTC-ACTACTGCTTAGGGTGACAAAATCT
*
56742 GTA
129 GCA
* * *
56745 ATCTTCAACCGACTCCATTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCACCTCT
1 ATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* * *
56810 GTATTGGGAAAATAAGTTTCA
66 GTATTAGGAAGATAAGATTCA
56831 TCATATNNNN
Statistics
Matches: 417, Mismatches: 55, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
131 6 0.01
132 405 0.97
133 6 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (131 bp):
ATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
GTATTAGGAAGATAAGATTCACCATCTTCGATCTGCTCACTACTGCTTAGGGTGACAAAATCTGC
A
Found at i:57565 original size:132 final size:132
Alignment explanation
Indices: 57221--58318 Score: 1569
Period size: 132 Copynumber: 8.3 Consensus size: 132
57211 NNNNNNNNNT
* * *
57221 GATTCACCATCTTTGATCTCGCTGCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 GATTCACCATCTTCGATCT-GCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* *
57286 CTCCAATACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTACTGGGAAGA
65 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
57351 TAA
130 TAA
* * *
57354 GATTCAACCATCTTCGATCTG-TATCACTACTGGTTAGGGTGACAGAATCTGCAATCTTCAACCG
1 GATTC-ACCATCTTCGATCTGCT-CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
*
57418 ACTCCACTACTGCTTAGGATGATAGGACTAATGGCATAAATCTGCTTCTCCACTGTATTGGGAAG
64 ACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
57483 ATAA
129 ATAA
* * *
57487 GATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGCTATCTTCAACCTTC
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
* *
57552 TCCACTACTGCTTAGTG-TGATAGGACTAATGGCTTAAATCTGGTTCGCCACTGTATTGGGAAGA
66 TCCACTACTGCTTAG-GATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
57616 TAA
130 TAA
57619 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
*** * * * *
57684 TCGGGTACTGCTTGAGG-TGATCGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTAGGACGA
66 TCCACTACTGCTT-AGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
57748 TAA
130 TAA
* * * *
57751 GATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTAC
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
** * * *
57816 TCCACTACACCTTAGGGA-GATAGGACTAATGGCTTAAATCTGTTTCTCTACTGTATTGGGAAAA
66 TCCACTACTGCTTA-GGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
57880 TAA
130 TAA
* * *
57883 GATTCACCATCTTCGATCTACTCCACTACTACTTAGGGTGACAGAATCTGCAATCCTCAACCTAC
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
* * * ** * * *
57948 TCCACTACTGCTTAGGGA-GATTGGACTAATGGTTTACATCTGCTTCTCCACAATGTTGAGAGGA
66 TCCACTACTGCTTA-GGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
*
58012 TAT
130 TAA
* * *
58015 GATTCACCATCTTCGATCCGCTGCACTACTTCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
* * * *
58080 TCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAGGAT
66 TCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
58145 AA
131 AA
* * *
58147 GATTCACCATCTTCGATCTGCGCCACTACT-TTTAGGGTGACAGAATCTGCAACCTTCAACCTAC
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
* * *
58211 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGAT
66 TCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
58276 AA
131 AA
* * *
58278 AATTCACCATCTTCGATCTGATCCACTAATGCTTAGGGTGA
1 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGA
58319 TAGGACTAAT
Statistics
Matches: 864, Mismatches: 92, Indels: 19
0.89 0.09 0.02
Matches are distributed among these distances:
131 124 0.14
132 609 0.70
133 118 0.14
134 13 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
TCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
AA
Found at i:57675 original size:44 final size:44
Alignment explanation
Indices: 57495--57678 Score: 108
Period size: 44 Copynumber: 4.2 Consensus size: 44
57485 AAGATTCACC
* * *
57495 ATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGCT
1 ATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
* * * * *
57539 ATCTTCAACCTTCTCCACTACTGCTTAGTGTGATAGGA-CT--A
1 ATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
* * * * * * * * * * *
57580 ATGGCTTAAATCTGGTTCGCCACTG-TATTGGGAAGATAAGATTC-ACC
1 AT--CTTCAATCTGCTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCA
*
57627 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
57671 ATCTTCAA
1 ATCTTCAA
57679 CCTACTCGGG
Statistics
Matches: 95, Mismatches: 35, Indels: 20
0.63 0.23 0.13
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 24 0.25
44 43 0.45
45 21 0.22
46 2 0.02
47 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (44 bp):
ATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
Found at i:58363 original size:88 final size:88
Alignment explanation
Indices: 58211--58406 Score: 322
Period size: 88 Copynumber: 2.2 Consensus size: 88
58201 TTCAACCTAC
58211 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGAT
*
58276 AAAATTCACCATCTTCGATCTGA
66 AAAATTCACCATCATCGATCTGA
* * *
58299 TCCACTAATGCTTAGGGTGATAGGACTAATGGCTT-AATACTGCTTCTCCACTGTATTGGGAAGA
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAT-CTGCTTCTCCACTATATTGGAAAGA
* *
58363 TAAGATTCACCATCATCGATCTGC
65 TAAAATTCACCATCATCGATCTGA
58387 TCCACTACTGCTTAGGGTGA
1 TCCACTACTGCTTAGGGTGA
58407 CAGAATCTGC
Statistics
Matches: 100, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
87 3 0.03
88 97 0.97
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (88 bp):
TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGAT
AAAATTCACCATCATCGATCTGA
Found at i:58421 original size:351 final size:351
Alignment explanation
Indices: 57948--58666 Score: 1041
Period size: 351 Copynumber: 2.0 Consensus size: 351
57938 CTCAACCTAC
* * * * *
57948 TCCACTACTGCTTAGGGAGATTGGACTAATGGTTTACATCTGCTTCTCCACAATGTTGAGAGGAT
1 TCCACTAATGCTTAGGGAGATAGGACTAATGGCTTACATCTGCTTCTCCACAATATTGAGAAGAT
* * * *
58013 ATGATTCACCATCTTCGATCCGCTGCACTACTTCTTAGGGTGACAGAATCTGCAATCTTCAACCT
66 AAGATTCACCATCATCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
* * *
58078 ACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAGG
131 ACACCACTACTGCTGAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAG
* *
58143 ATAAGATTCACCATCTTCGATCTGCGCCACTACTT-TTAGGGTGACAGAATCTGCAA-CCTTCAA
196 ATAAGATTCACCATCTTCGATCTCCGCCACTA-TTCTTAGGGTAACAGAATCTGCAATCC-TCAA
58206 CCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTATATTGG
259 CCTACTCCACTACTGCTTAGGGTGATAGGGA-TAATGGCTTAAATCTGCTTCTCCACTATATTGG
*
58270 AAAGATAAAATTCACCATCTTCGATCTGA
323 AAAGATAAAATTCACCATATTCGATCTGA
* ** *
58299 TCCACTAATGCTTAGGGTGATAGGACTAATGGCTTA-ATACTGCTTCTCCACTGTATTGGGAAGA
1 TCCACTAATGCTTAGGGAGATAGGACTAATGGCTTACAT-CTGCTTCTCCACAATATTGAGAAGA
* *
58363 TAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCC
65 TAAGATTCACCATCATCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
* * * * *
58428 TACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATTTTCTTCTCCACTGTATTGGTAA
130 TACACCACTACTGCTGAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAA
* *
58493 GATAAGATTCACCATCTTTGATCTCCTCCACTATTGCTTAGGGTAACAGAATCTGCAATCCTCAA
195 GATAAGATTCACCATCTTCGATCTCCGCCACTATT-CTTAGGGTAACAGAATCTGCAATCCTCAA
* * *
58558 CCTACTCCACTACTTCTTAGGGTGATAGGGATAATGGCTTATATCTGCTTCTCCACTGTATTGGA
259 CCTACTCCACTACTGCTTAGGGTGATAGGGATAATGGCTTAAATCTGCTTCTCCACTATATTGGA
* * *
58623 AAGATAAGATTCATCATATTCGATCTGC
324 AAGATAAAATTCACCATATTCGATCTGA
* *
58651 TCCACTATTGTTTAGG
1 TCCACTAATGCTTAGG
58667 TTGACAAAAT
Statistics
Matches: 327, Mismatches: 36, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
350 4 0.01
351 198 0.61
352 120 0.37
353 5 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (351 bp):
TCCACTAATGCTTAGGGAGATAGGACTAATGGCTTACATCTGCTTCTCCACAATATTGAGAAGAT
AAGATTCACCATCATCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
ACACCACTACTGCTGAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAG
ATAAGATTCACCATCTTCGATCTCCGCCACTATTCTTAGGGTAACAGAATCTGCAATCCTCAACC
TACTCCACTACTGCTTAGGGTGATAGGGATAATGGCTTAAATCTGCTTCTCCACTATATTGGAAA
GATAAAATTCACCATATTCGATCTGA
Found at i:58459 original size:483 final size:484
Alignment explanation
Indices: 57803--58800 Score: 1377
Period size: 483 Copynumber: 2.1 Consensus size: 484
57793 AGAATCTGTA
* * * * * *
57803 ATCTTCAACCTACTCCACTACA-CCTTAGGGAGATAGGACTAATGGCTTAAATCTGTTTCTCTAC
1 ATCTTCGATCTACTCCACTA-ATGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
*
57867 TGTATTGGGAAAATAAGATTCACCATCTTCGATCTACTCCACTACTACTTAGGGTGACAGAATCT
65 TGTATTGGGAAAATAAGATTCACCATCATCGATCTACTCCACTACTACTTAGGGTGACAGAATCT
* * * * *
57932 GCAATCCTCAACCTACTCCACTACTGCTTAGGGAGATTGGACTAATGGTTTACATCTGCTTCTCC
130 GCAATCCTCAACCTACACCACTACTGCTGAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCC
* * * * *
57997 ACAATGTTGAG-AGGATATGATTCACCATCTTCGATC-CGCTGCACTACTT-CTTAGGGTGACAG
195 ACAATATTG-GTAAGATAAGATTCACCATCTTCGATCTC-CTCCACTA-TTGCTTAGGGTAACAG
*
58059 AATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGACTTAAATCTGC
257 AATCTGCAATCCTCAACCTACTCCACTACTGCTTAGGGTGATAGGGA-TAATGACTTAAATCTGC
* * *
58123 TTCTCCACTCTATTGGGAGGATAAGATTCACCATCTTCGATCTGCGCCACTACT-TTTAGGGTGA
321 TTCTCCACTCTATTGGAAAGATAAGATTCACCATATTCGATCTGCGCCACTACTGTTTAGGGTGA
* * *
58187 CAGAATCTGCAACCTTCAACCTACTCCACTACTGCT-TAGGGTGATAGGACTAATGGCTTAAATC
386 CAAAATCCGCAACCTTCAACCTACTCCACTACTGCTCTA-GGAGATAGGACTAATGGCTTAAATC
* *
58251 TGCTTCTCCACTATA-TTGGAAAGATAAAATTCACC
450 TACTTCTCCACTATATTTGG-AAGACAAAATTCACC
58286 ATCTTCGATCTGA-TCCACTAATGCTTAGGGTGATAGGACTAATGGCTT-AATACTGCTTCTCCA
1 ATCTTCGATCT-ACTCCACTAATGCTTAGGGTGATAGGACTAATGGCTTAAAT-CTGCTTCTCCA
* * *
58349 CTGTATTGGGAAGATAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC
64 CTGTATTGGGAAAATAAGATTCACCATCATCGATCTACTCCACTACTACTTAGGGTGACAGAATC
* * * * *
58414 TGCAATCTTCAGCCTACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATTTTCTTCTC
129 TGCAATCCTCAACCTACACCACTACTGCTGAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTC
** *
58479 CACTGTATTGGTAAGATAAGATTCACCATCTTTGATCTCCTCCACTATTGCTTAGGGTAACAGAA
194 CACAATATTGGTAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTGCTTAGGGTAACAGAA
* * *
58544 TCTGCAATCCTCAACCTACTCCACTACTTCTTAGGGTGATAGGGATAATGGCTTATATCTGCTTC
259 TCTGCAATCCTCAACCTACTCCACTACTGCTTAGGGTGATAGGGATAATGACTTAAATCTGCTTC
* * * * *
58609 TCCACTGTATTGGAAAGATAAGATTCATCATATTCGATCTGCTCCACTATTGTTTAGGTTGACAA
324 TCCACTCTATTGGAAAGATAAGATTCACCATATTCGATCTGCGCCACTACTGTTTAGGGTGACAA
* *
58674 AATCCGCAATCTTTAACCTACTCCACTACTGCTCTAGGAGATAGGACTAATGGCTTAAATCTACT
389 AATCCGCAACCTTCAACCTACTCCACTACTGCTCTAGGAGATAGGACTAATGGCTTAAATCTACT
* * * *
58739 TCTCCTCTGTATTTGGAAGACAAGATTTACC
454 TCTCCACTATATTTGGAAGACAAAATTCACC
*
58770 ATCTTCGATCTACTCCACTACTGCTTAGGGT
1 ATCTTCGATCTACTCCACTAATGCTTAGGGT
58801 AACAGAATCT
Statistics
Matches: 452, Mismatches: 52, Indels: 21
0.86 0.10 0.04
Matches are distributed among these distances:
482 7 0.02
483 317 0.70
484 122 0.27
485 6 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (484 bp):
ATCTTCGATCTACTCCACTAATGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
GTATTGGGAAAATAAGATTCACCATCATCGATCTACTCCACTACTACTTAGGGTGACAGAATCTG
CAATCCTCAACCTACACCACTACTGCTGAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCA
CAATATTGGTAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTGCTTAGGGTAACAGAATC
TGCAATCCTCAACCTACTCCACTACTGCTTAGGGTGATAGGGATAATGACTTAAATCTGCTTCTC
CACTCTATTGGAAAGATAAGATTCACCATATTCGATCTGCGCCACTACTGTTTAGGGTGACAAAA
TCCGCAACCTTCAACCTACTCCACTACTGCTCTAGGAGATAGGACTAATGGCTTAAATCTACTTC
TCCACTATATTTGGAAGACAAAATTCACC
Found at i:58507 original size:220 final size:219
Alignment explanation
Indices: 58080--58536 Score: 709
Period size: 220 Copynumber: 2.1 Consensus size: 219
58070 TTCAACCTAC
* *
58080 TCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAGGAT
1 TCCACTAATGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGAT
* *
58145 AAGATTCACCATCTTCGATCTGCGCCACTACTTTTAGGGTGACAGAATCTGCAACCTTCAACCTA
66 AAGATTCACCATCATCGATCTGCGCCACTACTCTTAGGGTGACAGAATCTGCAACCTTCAACCTA
* *
58210 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGA
131 CACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGA
*
58275 TAAAATTCACCATCTTCGATCTGA
196 TAAAATTCACCATCTTCGATCTCA
* *
58299 TCCACTAATGCTTAGGGTGATAGGACTAATGGCTT-AATACTGCTTCTCCACTGTATTGGGAAGA
1 TCCACTAATGCTTAGGGTGATAGGACTAATGACTTAAAT-CTGCTTCTCCACTCTATTGGGAAGA
* * *
58363 TAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCC
65 TAAGATTCACCATCATCGATCTGCGCCACTACT-CTTAGGGTGACAGAATCTGCAACCTTCAACC
* * * *
58428 TACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATTTTCTTCTCCACTGTATTGGTAA
129 TACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAA
* * *
58493 GATAAGATTCACCATCTTTGATCTCC
194 GATAAAATTCACCATCTTCGATCTCA
*
58519 TCCACTATTGCTTAGGGT
1 TCCACTAATGCTTAGGGT
58537 AACAGAATCT
Statistics
Matches: 216, Mismatches: 20, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
218 3 0.01
219 87 0.40
220 126 0.58
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (219 bp):
TCCACTAATGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAAGAT
AAGATTCACCATCATCGATCTGCGCCACTACTCTTAGGGTGACAGAATCTGCAACCTTCAACCTA
CACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAGA
TAAAATTCACCATCTTCGATCTCA
Found at i:58523 original size:132 final size:132
Alignment explanation
Indices: 58299--59433 Score: 1612
Period size: 132 Copynumber: 8.6 Consensus size: 132
58289 TTCGATCTGA
*
58299 TCCACTAATGCTTAGGGTGATAGGACTAATGGCTT-AATACTGCTTCTCCACTGTATTGGGAAGA
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAT-CTGCTTCTCCACTGTATTGGGAAGA
* * *
58363 TAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCC
65 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACC
58428 TAC
130 TAC
* * * * *
58431 ACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATTTTCTTCTCCACTGTATTGGTAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* * * *
58496 AAGATTCACCATCTTTGATCTCCTCCACTATTGCTTAGGGTAACAGAATCTGCAATCCTCAACCT
66 AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACCT
58561 AC
131 AC
* * *
58563 TCCACTACTTCTTAGGGTGATAGGGA-TAATGGCTTATATCTGCTTCTCCACTGTATTGGAAAGA
1 TCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * * * * * * *
58627 TAAGATTCATCATATTCGATCTGCTCCACTATTGTTTAGGTTGACAAAATCCGCAATCTTTAACC
65 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACC
58692 TAC
130 TAC
* * * *
58695 TCCACTACTGCTCTA-GGAGATAGGACTAATGGCTTAAATCTACTTCTCCTCTGTATTTGGAAGA
1 TCCACTACTGCT-TAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * *
58759 CAAGATTTACCATCTTCGATCTACTCCACTACTGCTTAGGGTAACAGAATCTGC-ATCTTCAACC
65 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACC
58823 TAC
130 TAC
* * * * * * **
58826 TCCACTACAGCTTAGAGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTCAGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* ** *
58891 AAGATTCACCATCTTCGATCCGCTCCAAAACTGCTTAGGGTAACAGAATCTGAAATCTTCAACCT
66 AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACCT
58956 AC
131 AC
*
58958 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGGAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* * *
59023 AAGATTCACCATCTTCGATCCGCTCCACAACTGCTTAGGGTAACATAATCTGCAATCTTCAACCT
66 AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACCT
59088 AC
131 AC
* * * *
59090 TCGACTACTGCTTTGGGTGATAGGACTAATGGCTTAAGTCTACTTCTCCACTGTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* * * *
59155 AAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTTAACCG
66 AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACCT
59220 AC
131 AC
* * *
59222 TCCACTACTTCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTCTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
* * * *
59287 AAGATTTACCATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCTACAATCTTCAACCT
66 AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACCT
59352 AC
131 AC
* * * *
59354 GCCACTACTGCTTATGATGATAGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTGGGAAGAT
1 TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
59419 AAGATTCACCATCTT
66 AAGATTCACCATCTT
Statistics
Matches: 888, Mismatches: 109, Indels: 12
0.88 0.11 0.01
Matches are distributed among these distances:
130 2 0.00
131 114 0.13
132 764 0.86
133 8 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (132 bp):
TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCTTCAACCT
AC
Found at i:58773 original size:747 final size:747
Alignment explanation
Indices: 57552--59063 Score: 2146
Period size: 747 Copynumber: 2.0 Consensus size: 747
57542 TTCAACCTTC
* * *
57552 TCCACTACTGCTTAGTGTGATAGGACTAATGGCTTAAATCTGGTTCGCCACTGTATTGGGAAGAT
1 TCCACTAATGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCGCCACTGTATTGGGAAGAT
*
57617 AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
66 AAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
* *** * *
57682 ACTCGGGTACTGCTTGAGGTGATCGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTAGGACG
131 ACACCACTACTGCTTGAGGTGATAGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTAGGAAG
* * * * * *
57747 ATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAAC
196 ATAAGATTCACCATATTCGATCTCCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCCTCAAC
* *
57812 CTACTCCACTACACCTTAGGGAGATAGGACTAATGGCTTAAATCTGTTTCTCTACTGTATTGGGA
261 CTACTCCACTACACCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGA
* * *
57877 AAATAAGATTCACCATCTTCGATCTACTCCACTACTACTTAGGGTGACAGAATCTGCAATCCTCA
326 AAATAAGATTCACCATATTCGATCTACTCCACTACTACTTAGGGTGACAAAATCCGCAATCCTCA
* * * *
57942 ACCTACTCCACTACTGCTTAGGGAGATTGGACTAATGGTTTACATCTGCTTCTCCACAATGTTGA
391 ACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACAATGTTGA
* * * * * * *
58007 GAGGATATGATTCACCATCTTCGATCCGCTGCACTACTTCTTAGGGTGACAGAATCTGCAATCTT
456 GAAGACAAGATTCACCATCTTCGATCCACTCCACTACTGCTTAGGGTAACAGAATCTGC-ATCTT
* * * *
58072 CAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATT
520 CAACCTACTCCACTACAGCTTAGAGAGATAGGACTAATGACTTAAATCTGCTTCTCCACTATATT
** * * ** * * *
58137 GGGAGGATAAGATTCACCATCTTCGATCTGCGCCACTACT-TTTAGGGTGACAGAATCTGCAACC
585 CAGAAGATAAGATTCACCATCTTCGATCCGCGCCAAAACTGCTTAGGGTAACAGAATCTGAAACC
58201 TTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATA
650 TTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATA
*
58266 TTGGAAAGATAAAATTCACCATCTTCGATCTGA
715 TTGGAAAGATAAAATTCACCATCTTCGATCCGA
*
58299 TCCACTAATGCTTAGGGTGATAGGACTAATGGCTT-AATACTGCTTCTCCACTGTATTGGGAAGA
1 TCCACTAATGCTTAGGGTGATAGGACTAATGGCTTAAAT-CTGCTTCGCCACTGTATTGGGAAGA
*
58363 TAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCC
65 TAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
*
58428 TACACCACTACTGC-TGAGGGTGATAGGACTAATGGCTTAAAT-TTTCTTCTCCACTGTATT-GG
130 TACACCACTACTGCTTGA-GGTGATAGGACTAATGGCTTAAATCTGT-TTCTCCACTGTATTAGG
* * *
58490 TAAGATAAGATTCACCATCTTTGATCTCCTCCACTATTGCTTAGGGTAACAGAATCTGCAATCCT
193 -AAGATAAGATTCACCATATTCGATCTCCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCCT
** * *
58555 CAACCTACTCCACTACTTCTTAGGGTGATAGGGA-TAATGGCTTATATCTGCTTCTCCACTGTAT
257 CAACCTACTCCACTACACCTTAGGGAGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
* * * ** *
58619 T-GGAAAGATAAGATTCATCATATTCGATCTGCTCCACTATTGTTTAGGTTGACAAAATCCGCAA
321 TGGGAAA-ATAAGATTCACCATATTCGATCTACTCCACTACTACTTAGGGTGACAAAATCCGCAA
* * *
58683 TCTTTAACCTACTCCACTACTGCTCTA-GGAGATAGGACTAATGGCTTAAATCTACTTCTCCTCT
385 TCCTCAACCTACTCCACTACTGCT-TAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCAC-
* * *
58747 GTAT-TTG-GAAGACAAGATTTACCATCTTCGATCTACTCCACTACTGCTTAGGGTAACAGAATC
448 -AATGTTGAGAAGACAAGATTCACCATCTTCGATCCACTCCACTACTGCTTAGGGTAACAGAATC
* *
58810 TGCATCTTCAACCTACTCCACTACAGCTTAGAGAGATTGGACTAATGGCTTAAATCTGCTTCTCC
512 TGCATCTTCAACCTACTCCACTACAGCTTAGAGAGATAGGACTAATGACTTAAATCTGCTTCTCC
* *
58875 ACTATCTTCAGAAGATAAGATTCACCATCTTCGATCCGCTCCAAAACTGCTTAGGGTAACAGAAT
577 ACTATATTCAGAAGATAAGATTCACCATCTTCGATCCGCGCCAAAACTGCTTAGGGTAACAGAAT
*
58940 CTGAAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCT
642 CTGAAACCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCT
* ** * *
59005 CCACTGTATTGGGGAGATAAGATTCACCATCTTCGATCCGC
707 CCACTATATTGGAAAGATAAAATTCACCATCTTCGATCCGA
59046 TCCAC-AACTGCTTAGGGT
1 TCCACTAA-TGCTTAGGGT
59064 AACATAATCT
Statistics
Matches: 676, Mismatches: 78, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
746 113 0.17
747 553 0.82
748 8 0.01
749 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (747 bp):
TCCACTAATGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCGCCACTGTATTGGGAAGAT
AAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
ACACCACTACTGCTTGAGGTGATAGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTAGGAAG
ATAAGATTCACCATATTCGATCTCCTCCACTACTGCTTAGGGTAACAGAATCTGCAATCCTCAAC
CTACTCCACTACACCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGA
AAATAAGATTCACCATATTCGATCTACTCCACTACTACTTAGGGTGACAAAATCCGCAATCCTCA
ACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACAATGTTGA
GAAGACAAGATTCACCATCTTCGATCCACTCCACTACTGCTTAGGGTAACAGAATCTGCATCTTC
AACCTACTCCACTACAGCTTAGAGAGATAGGACTAATGACTTAAATCTGCTTCTCCACTATATTC
AGAAGATAAGATTCACCATCTTCGATCCGCGCCAAAACTGCTTAGGGTAACAGAATCTGAAACCT
TCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATAT
TGGAAAGATAAAATTCACCATCTTCGATCCGA
Found at i:58928 original size:615 final size:616
Alignment explanation
Indices: 57690--58931 Score: 1725
Period size: 615 Copynumber: 2.0 Consensus size: 616
57680 CTACTCGGGT
* * *
57690 ACTGCTT-GAGGTGATCGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTAGGACGATAAGAT
1 ACTGCTTAG-GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGAT
* * * *
57754 TCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCC
65 TCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACACC
* *
57819 ACTACACCTTAGGGAGATAGGACTAATGGCTTAAATCTGTTTCTCTACTGTATTGGGAAAATAAG
130 ACTACACCTGAGGGAGATAGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTGGGAAAATAAG
*
57884 ATTCACCATCTTCGATCTACTCCACTACTACTTAGGGTGACAGAATCTGCAATCCTCAACCTACT
195 ATTCACCATCTTCGATCTACTCCACTACTACTTAGGGTAACAGAATCTGCAATCCTCAACCTACT
* * * *
57949 CCACTACTGCTTAGGGAGATTGGACTAATGGTTTACATCTGCTTCTCCACAATGTTGAGAGGATA
260 CCACTACTGCTTAGGGAGATGGGACTAATGGCTTACATCTGCTTCTCCACAATATTGAGAAGATA
* * * * *
58014 TGATTCACCATCTTCGATCCGCTGCACTACTTCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
325 AGATTCACCATATTCGATCCGCTCCACTACTTCTTAGGGTGACAAAATCCGCAATCTTCAACCTA
* * *
58079 CTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTCTATTGGGAGGA
390 CTCCACTACTGCTTAGGGAGATAGGACTAATGACTTAAATCTACTTCTCCACTCTATTGGGAAGA
* * * *
58144 TAAGATTCACCATCTTCGATCTGCGCCACTACTTTTAGGGTGACAGAATCTGCAACCTTCAACCT
455 CAAGATTCACCATCTTCGATCTACGCCACTACTCTTAGGGTAACAGAATCTGCAACCTTCAACCT
* * * *
58209 ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGAAAG
520 ACTCCACTACAGCTTAGAGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAGAAAG
* *
58274 ATAAAATTCACCATCTTCGATCTGATCCACTA
585 ATAAAATTCACCATCTTCGATCCGATCCACAA
*
58306 A-TGCTTAGGGTGATAGGACTAATGGCTT-AATACTGCTTCTCCACTGTATTGGGAAGATAAGAT
1 ACTGCTTAGGGTGATAGGACTAATGGCTTAAAT-CTGCTTCTCCACTGTATTAGGAAGATAAGAT
*
58369 TCACCATCA-TCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTACAC
65 TCACCAT-ATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACAC
** * * * *
58433 CACTACTGCTGAGGGTGATAGGACTAATGGCTTAAAT-TTTCTTCTCCACTGTATTGGTAAGATA
129 CACTACACCTGAGGGAGATAGGACTAATGGCTTAAATCTGT-TTCTCCACTGTATTGGGAAAATA
* * * *
58497 AGATTCACCATCTTTGATCTCCTCCACTATTGCTTAGGGTAACAGAATCTGCAATCCTCAACCTA
193 AGATTCACCATCTTCGATCTACTCCACTACTACTTAGGGTAACAGAATCTGCAATCCTCAACCTA
* * * **
58562 CTCCACTACTTCTTAGGGTGATAGGGA-TAATGGCTTATATCTGCTTCTCCACTGTATTG-GAAA
258 CTCCACTACTGCTTAGGGAGAT-GGGACTAATGGCTTACATCTGCTTCTCCACAATATTGAG-AA
* * * * *
58625 GATAAGATTCATCATATTCGATCTGCTCCACTA-TTGTTTAGGTTGACAAAATCCGCAATCTTTA
321 GATAAGATTCACCATATTCGATCCGCTCCACTACTT-CTTAGGGTGACAAAATCCGCAATCTTCA
* * * *
58689 ACCTACTCCACTACTGCTCTA-GGAGATAGGACTAATGGCTTAAATCTACTTCTCCTCTGTATTT
385 ACCTACTCCACTACTGCT-TAGGGAGATAGGACTAATGACTTAAATCTACTTCTCCACTCTATTG
* * *
58753 GGAAGACAAGATTTACCATCTTCGATCTACTCCACTACTGCTTAGGGTAACAGAATCTGC-ATCT
449 GGAAGACAAGATTCACCATCTTCGATCTACGCCACTACT-CTTAGGGTAACAGAATCTGCAACCT
* *
58817 TCAACCTACTCCACTACAGCTTAGAGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTATCT
513 TCAACCTACTCCACTACAGCTTAGAGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATAT
* *
58882 TCAG-AAGATAAGATTCACCATCTTCGATCCGCTCCA-AA
578 T-AGAAAGATAAAATTCACCATCTTCGATCCGATCCACAA
58920 ACTGCTTAGGGT
1 ACTGCTTAGGGT
58932 AACAGAATCT
Statistics
Matches: 550, Mismatches: 65, Indels: 23
0.86 0.10 0.04
Matches are distributed among these distances:
614 10 0.02
615 513 0.93
616 27 0.05
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (616 bp):
ACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATT
CACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACACCA
CTACACCTGAGGGAGATAGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTGGGAAAATAAGA
TTCACCATCTTCGATCTACTCCACTACTACTTAGGGTAACAGAATCTGCAATCCTCAACCTACTC
CACTACTGCTTAGGGAGATGGGACTAATGGCTTACATCTGCTTCTCCACAATATTGAGAAGATAA
GATTCACCATATTCGATCCGCTCCACTACTTCTTAGGGTGACAAAATCCGCAATCTTCAACCTAC
TCCACTACTGCTTAGGGAGATAGGACTAATGACTTAAATCTACTTCTCCACTCTATTGGGAAGAC
AAGATTCACCATCTTCGATCTACGCCACTACTCTTAGGGTAACAGAATCTGCAACCTTCAACCTA
CTCCACTACAGCTTAGAGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAGAAAGA
TAAAATTCACCATCTTCGATCCGATCCACAA
Found at i:59031 original size:527 final size:528
Alignment explanation
Indices: 58299--59433 Score: 1683
Period size: 527 Copynumber: 2.2 Consensus size: 528
58289 TTCGATCTGA
*
58299 TCCACTA-ATGCTTAGGGTGATAGGACTAATGGCTT-AATACTGCTTCTCCACTGTATTGGGAAG
1 TCCACTACA-GCTTAGAGTGATAGGACTAATGGCTTAAAT-CTGCTTCTCCACTGTATTGGGAAG
* * ** * * *
58362 ATAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGC
64 ATAAGATTCACCATCTTCGATCCGCTCCAAAACTGCTTAGGGTAACAGAATCTGAAATCTTCAAC
* * *
58427 CTACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATTTTCTTCTCCACTGTATTGGTA
129 CTACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGA
* * *
58492 AGATAAGATTCACCATCTTTGATCTC-CTCCACTATTGCTTAGGGTAACAGAATCTGCAATCCTC
194 AGATAAGATTCACCATCTTCGATC-CGCTCCACAACTGCTTAGGGTAACAGAATCTGCAATCCTC
* *
58556 AACCTACTCCACTACTTCTTAGGGTGATAGGGA-TAATGGCTTATA-TCTGCTTCTCCACTGTAT
258 AACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTA-AGTCTACTTCTCCACTGTAT
* * ** *
58619 TGGAAAGATAAGATTCATCATATTCGATCTGCTCCACTATTGTTTAGGTTGACAAAATCCGCAAT
321 TGGAAAGATAAGATTCACCATATTCGATCTGCTCCACTACTACTTAGGGTGACAAAATCCGCAAT
* * *
58684 CTTTAACCTACTCCACTACTGCTCTA-GGAGATAGGACTAATGGCTTAAATCTACTTCTCCTCTG
386 CTTTAACCGACTCCACTACTGCT-TAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACTC
* * *
58748 TATTTGGAAGACAAGATTTACCATCTTCGATCTACTCCACTACTGCTTAGGGTAACAGAATCTGC
450 TATTGGGAAGACAAGATTTACCATCTTCGATCTACTCCACTACTGCTTAAGGTAACAGAATCTAC
58813 -ATCTTCAACCTAC
515 AATCTTCAACCTAC
* * * * **
58826 TCCACTACAGCTTAGAGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTCAGAAGAT
1 TCCACTACAGCTTAGAGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
58891 AAGATTCACCATCTTCGATCCGCTCCAAAACTGCTTAGGGTAACAGAATCTGAAATCTTCAACCT
66 AAGATTCACCATCTTCGATCCGCTCCAAAACTGCTTAGGGTAACAGAATCTGAAATCTTCAACCT
* * *
58956 ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGGAG
131 ACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
* *
59021 ATAAGATTCACCATCTTCGATCCGCTCCACAACTGCTTAGGGTAACATAATCTGCAATCTTCAAC
196 ATAAGATTCACCATCTTCGATCCGCTCCACAACTGCTTAGGGTAACAGAATCTGCAATCCTCAAC
* * *
59086 CTACTCGACTACTGCTTTGGGTGATAGGACTAATGGCTTAAGTCTACTTCTCCACTGTATTGGGA
261 CTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAGTCTACTTCTCCACTGTATTGGAA
* * *
59151 AGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTTA
326 AGATAAGATTCACCATATTCGATCTGCTCCACTACTACTTAGGGTGACAAAATCCGCAATCTTTA
* *
59216 ACCGACTCCACTACTTCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTCTATTGG
391 ACCGACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACTCTATTGG
* * *
59281 GAAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCTACAATCTT
456 GAAGACAAGATTTACCATCTTCGATCTACTCCACTACTGCTTAAGGTAACAGAATCTACAATCTT
59346 CAACCTAC
521 CAACCTAC
* * *
59354 GCCACTACTGCTTATGA-TGATAGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTGGGAAGA
1 TCCACTACAGCTTA-GAGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
59418 TAAGATTCACCATCTT
65 TAAGATTCACCATCTT
Statistics
Matches: 542, Mismatches: 58, Indels: 15
0.88 0.09 0.02
Matches are distributed among these distances:
526 7 0.01
527 448 0.83
528 85 0.16
529 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (528 bp):
TCCACTACAGCTTAGAGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
AAGATTCACCATCTTCGATCCGCTCCAAAACTGCTTAGGGTAACAGAATCTGAAATCTTCAACCT
ACACCACTACTGCTGAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
ATAAGATTCACCATCTTCGATCCGCTCCACAACTGCTTAGGGTAACAGAATCTGCAATCCTCAAC
CTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAGTCTACTTCTCCACTGTATTGGAA
AGATAAGATTCACCATATTCGATCTGCTCCACTACTACTTAGGGTGACAAAATCCGCAATCTTTA
ACCGACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACTCTATTGG
GAAGACAAGATTTACCATCTTCGATCTACTCCACTACTGCTTAAGGTAACAGAATCTACAATCTT
CAACCTAC
Done.