Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_381 ID=scaffold_381-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8250
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.29

Warning! 590 characters in sequence are not A, C, G, or T


Found at i:488 original size:16 final size:17

Alignment explanation


    Indices: 455--488  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        445 TATAAATTTA

                 *           
        455 ATATTTACCTTATTACT
          1 ATATTAACCTTATTACT

                             
        472 ATATTAACCTT-TTACT
          1 ATATTAACCTTATTACT

             
        488 A
          1 A

        489 ATAATTATGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    6  0.38
  17   10  0.62

ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50


Consensus pattern (17 bp):   
ATATTAACCTTATTACT

Found at i:7025 original size:16 final size:17

Alignment explanation


    Indices: 6992--7025  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       6982 TATAAATTTA

                 *           
       6992 ATATTTACCTTATTACT
          1 ATATTAACCTTATTACT

                             
       7009 ATATTAACCTT-TTACT
          1 ATATTAACCTTATTACT

             
       7025 A
          1 A

       7026 ATAATTATGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    6  0.38
  17   10  0.62

ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50


Consensus pattern (17 bp):   
ATATTAACCTTATTACT
Done.