Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_385 ID=scaffold_385-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12617
ACGTcount: A:0.18, C:0.18, G:0.10, T:0.14
Warning! 4982 characters in sequence are not A, C, G, or T
Found at i:68 original size:46 final size:46
Alignment explanation
Indices: 1--1439 Score: 1134
Period size: 46 Copynumber: 30.9 Consensus size: 46
* *
1 AAGACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAAG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * *
47 AAGACCAGATTTGCTATCTTCGTTCCCCTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
**
93 AAGACAAGATCAACTATCTTCGATCCCCTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* *
139 AAGACAAGATCTGCTATCTTCGATCCCCTCTGCTGCCAAATATAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * * *
185 AAAACAAGATCTGATATCCTAGATCCCCTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * *
231 AAAACAAGATCTGCTATCTTCGATCCCCTCTGCTGCCATATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * * *
277 AAGACAAGATATGCTATCCTCGTTCCCCTCCGTTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * *
323 AAGACAAGATCTGCTATCTTCGATCCCCTCTGCTGCAAAATAGAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * *
369 AAGACAAGATATGCTATCCTCGATCCCCTCCGCAGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * **
415 AAGACAAGATCTGATATCTTCAATCCCCTCCGCTATCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
461 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
507 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * * * * * *
553 AAGACAAGATCTGCTATCTTTGATCTCTTCCACTACCAAAGACATG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* *
599 AAGACAACATCTGCTATCGTCGATCCCCTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
***************************
645 AAGACAAGATCTGCTATCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 AAGACAAGATCTGCTATC-T---------TCGATCCCCTCCGCTGCCAAATACAGG
**********************************************
701 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
****************** * *
747 NNNNNNNNNNNNNNNNNNTTCGATCCCCTCCACTGCCAAATTCAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
** * * *
793 AAGGGAAGATTTGCTATCTTCTATCCCTTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * *
839 AAGAAAAGATCTGATATCTTCGATCCCCTCTGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
*
885 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACATG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* *
931 AAGACAAGATCTGATATCTTCGATCCCTTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* *
977 AAGACAAGATCTGTTATCTTCGATCCCCTCTGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * * *
1023 AAGACAAGATCTGATATCTTCGATCCCTTCCGTTGCCAAATTCAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* *
1069 AAGACAAGATCTGCTATCTTTGATCTCCTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* *
1115 AAGACAAGATCTGATATCTTCGATCCCCTCTGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* *
1161 AAGACAAGATCTGCTGTCTTCGATCCCTTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * * * *
1207 AAGATAAGATCTGATATTTTCAATCCCTTCCGCTGCCAAATACAGG
1 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * * *
1253 AAGACAAGATCTACTATCTTCGATCCCTCTCTGCTGCCATATATAGG
1 AAGACAAGATCTGCTATCTTCGATCCC-CTCCGCTGCCAAATACAGG
* * *
1300 AGAGACAGAGATCTGATATCTCCGATCCCTTCGCGCTGCCAAATACAGG
1 A-AGACA-AGATCTGCTATCTTCGATCCCCTC-CGCTGCCAAATACAGG
* *
1349 AGAGACAGAGATCTGCTATCTTCGATCTCTCTCCGCTGCCAAATACGGGG
1 A-AGACA-AGATCTGCTATCTTCGATC-CCCTCCGCTGCCAAATAC-AGG
* * * *
1399 AAGACAGAGATGTGATATCTGT-AATCCCCTTCGCTGCCAAA
1 AAGACA-AGATCTGCTATCT-TCGATCCCCTCCGCTGCCAAA
1440 GACGGGGAGA
Statistics
Matches: 1139, Mismatches: 237, Indels: 32
0.81 0.17 0.02
Matches are distributed among these distances:
46 1007 0.88
47 16 0.01
48 20 0.02
49 89 0.08
50 7 0.01
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.22
Consensus pattern (46 bp):
AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
Found at i:158 original size:92 final size:92
Alignment explanation
Indices: 1--3116 Score: 1884
Period size: 92 Copynumber: 33.5 Consensus size: 92
* * *
1 AAGACAAGATCTGA-TATCTTCGATCCCCTCCGCTGCCAAATACAAGAAGACCAGATTTGCTATC
1 AAGACAAGATCT-ACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATC
*
65 TTCGTTCCCCTCCGCTGCCAAATACAGG
65 TTCGATCCCCTCCGCTGCCAAATACAGG
*
93 AAGACAAGATCAACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* *
158 TCGATCCCCTCTGCTGCCAAATATAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* * * *
185 AAAACAAGATCTGA-TATCCTAGATCCCCTCCGCTGCCAAATACAGGAAAACAAGATCTGCTATC
1 AAGACAAGATCT-ACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATC
* *
249 TTCGATCCCCTCTGCTGCCATATACAGG
65 TTCGATCCCCTCCGCTGCCAAATACAGG
* * * * *
277 AAGACAAGATATGCTATCCTCGTTCCCCTCCGTTGCCAAATACAGGAAGACAAGATCTGCTATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* * *
342 TCGATCCCCTCTGCTGCAAAATAGAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* * * * *
369 AAGACAAGATATGCTATCCTCGATCCCCTCCGCAGCCAAATACAGGAAGACAAGATCTGATATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* **
434 TCAATCCCCTCCGCTATCAAATACAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
*
461 AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
526 TCGATCCCCTCCGCTGCCAAATACAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* * * * * * * * * *
553 AAGACAAGATCTGCTATCTTTGATCTCTTCCACTACCAAAGACATGAAGACAACATCTGCTATCG
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
618 TCGATCCCCTCCGCTGCCAAATACAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* ************************************
645 AAGACAAGATCTGCTATCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 AAGACAAGATCTACTATC-T---------TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
*************************************
710 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
56 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
****************** * * ** *
747 NNNNNNNNNNNNNNNNNNTTCGATCCCCTCCACTGCCAAATTCAGGAAGGGAAGATTTGCTATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* *
812 TCTATCCCTTCCGCTGCCAAATACAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* *
839 AAGAAAAGATCTGA-TATCTTCGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATC
1 AAGACAAGATCT-ACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATC
*
903 TTCGATCCCCTCCGCTGCCAAATACATG
65 TTCGATCCCCTCCGCTGCCAAATACAGG
* *
931 AAGACAAGATCTGA-TATCTTCGATCCCTTCCGCTGCCAAATACAGGAAGACAAGATCTGTTATC
1 AAGACAAGATCT-ACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATC
*
995 TTCGATCCCCTCTGCTGCCAAATACAGG
65 TTCGATCCCCTCCGCTGCCAAATACAGG
* * *
1023 AAGACAAGATCTGA-TATCTTCGATCCCTTCCGTTGCCAAATTCAGGAAGACAAGATCTGCTATC
1 AAGACAAGATCT-ACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATC
* *
1087 TTTGATCTCCTCCGCTGCCAAATACAGG
65 TTCGATCCCCTCCGCTGCCAAATACAGG
* *
1115 AAGACAAGATCTGA-TATCTTCGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTGTC
1 AAGACAAGATCT-ACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATC
*
1179 TTCGATCCCTTCCGCTGCCAAATACAGG
65 TTCGATCCCCTCCGCTGCCAAATACAGG
* * * * *
1207 AAGATAAGATCTGA-TATTTTCAATCCCTTCCGCTGCCAAATACAGGAAGACAAGATCTACTATC
1 AAGACAAGATCT-ACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATC
* * *
1271 TTCGATCCCTCTCTGCTGCCATATATAGG
65 TTCGATCCC-CTCCGCTGCCAAATACAGG
* *
1300 AGAGACAGAGATCTGA-TATCTCCGATCCCTTCGCGCTGCCAAATACAGGAGAGACAGAGATCTG
1 A-AGACA-AGATCT-ACTATCTTCGATCCCCTC-CGCTGCCAAATACAGGA-AGACA-AGATCTG
* *
1364 CTATCTTCGATCTCTCTCCGCTGCCAAATACGGGG
60 CTATCTTCGATC-CCCTCCGCTGCCAAATAC-AGG
* * * * * * * *
1399 AAGACAGAGATGTGA-TATCTGT-AATCCCCTTCGCTGCCAAAGACGGGGAGACGAGATGTGCTN
1 AAGACA-AGATCT-ACTATCT-TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT-
*******************************
1462 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
62 ---------ATCTTCGATCCCCTCCGCTGCCAAATACAGG
*********************************************************** *
1502 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGC--TAT
* * * ** * *** * **
1567 CTGCTAT--CTTCAATCTCCTCCGCTGC-CA
64 CTTCGATCCCCTC-CGCTGC-CAAATACAGG
* * ** * * *
1595 AATACAGGA-AGACAAGATCTGCTATCTTCGATCCCTTCCGCTGCCAAATTCAGGAAGACAAGAT
1 AAGACAAGATCTAC--TATCT-------TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGAT
* * * *
1659 CTGATATCTTCGATCTCTTCCGCTGCCAAATAAAGG
57 CTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG
* * * *
1695 AAGAGAAGATCTACTATCATCGATCTCCTCCG-TAGCCAAATACAGGAAGACAAGATCTGATATC
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCT-GCCAAATACAGGAAGACAAGATCTGCTATC
* *
1759 TTCGATCCCTTCTGCTGCCAAATACAGG
65 TTCGATCCCCTCCGCTGCCAAATACAGG
* * *
1787 AAGACAAGATCTACTATCTTCGATCCCCACCTCTG-CAAATACAGGAAGACAAGATTTGCTATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* *
1851 TCGACCCCCTCCGCTGCCAAATACTGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* ** * * * * * * * *
1878 AAGACAGGATCTGTTATCCTCGATCTCTTCCACTGCCAAATACAAGAATACAAGATTTGATATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* *
1943 TCGATCCCCTCCGCTGCTAGATACAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* * * * * **
1970 AAGAAAAGATATGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGACAAGATCTGAGATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
** *
2035 TCGATCTGCTCCGCTGCAAAATACAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* *
2062 AAGACAAGATCTGA-TATCTTCGATCCACTCCGCTGCCAAATACAGGAAGACAAGATCTGATATC
1 AAGACAAGATCT-ACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATC
2126 TTCGATCCCCTCCGCTGCCAAATACAGG
65 TTCGATCCCCTCCGCTGCCAAATACAGG
* * * * * *
2154 AAGACAAGATCTGA-TATCTTCGATCCCTTTCGCTGCCAAATTCAAGAAAACAAGATCTGATATC
1 AAGACAAGATCT-ACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATC
* * *
2218 TTTGATCCCCTCTGCTGCCAAATACCGG
65 TTCGATCCCCTCCGCTGCCAAATACAGG
* * * * * * **
2246 AAGACAAGATCTGCTGTCGTCGATCCCCTCCGCAGCCAAATATAGGAAGACAAGAACTAATATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* *
2311 TCGATCCCTTCCGCTGCCAAATATAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* * * * *
2338 ATGACAAGATCTACTATCTTCGATCCCCACCTC-CCCAAATACAGGAAGACAAGATTTGCTATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
*
2402 TCGACCCCCTCCGCTGCCAAATACAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* * * * * * * * * *
2429 AAGACAGGATCTGCTATCCTCGATCTCTTCCACTGCCAAATACAGGAATACAATATTTGATATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* *
2494 TCGATCCCCTCCGCTGCTAGATACAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* * * * **
2521 AAGACAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGATAAGATCTGAGATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* * *
2586 TCGATCCGCTCCGCTACAAAATACAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* * *
2613 AAGACAAGATCTGA-TATCTTCGATCCACTCCGCTGCCAAATATAGGAAGACAAGATCTGATATC
1 AAGACAAGATCT-ACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATC
*
2677 TTCGATCCCCTCCGCTGCCAAAAACAGG
65 TTCGATCCCCTCCGCTGCCAAATACAGG
* * ** * *
2705 AAGACAAGATCTGA-TATCTTCGATCCCTTTCGCTGCCAAATTTAGGAAAACAAGATCTGATATC
1 AAGACAAGATCT-ACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATC
* *
2769 TTCGATCCCCTCTGCTGCCAAATACCGG
65 TTCGATCCCCTCCGCTGCCAAATACAGG
* *
2797 AAGACAAGATCTGCTATCGTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* ** *
2862 TCGATCCACTTTGCTGGCAAATACAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* * * * * *
2889 AAGACCAGATCTGCTATGTTCGATCCCCTCCGCTACCAATTACAGGAAGACAAGATCAGCTATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* *
2954 TCGATCCCCTCTGCTGCCAAATAGAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* * * * * *
2981 AAGACAAGATCTGCTATCTTCGATCCCTTCCGCTGTCGAATTCAGGAAGACAAGATCTACTATCT
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
***
3046 TCGATCCCCTCTATTGCCAAATACAGG
66 TCGATCCCCTCCGCTGCCAAATACAGG
* * * * *
3073 AACACAAGATCTGCTATCTTCAATCCCC-CCACTACCAAATACAG
1 AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAG
3117 NNNNNNNNNN
Statistics
Matches: 2285, Mismatches: 679, Indels: 121
0.74 0.22 0.04
Matches are distributed among these distances:
91 164 0.07
92 1941 0.85
93 19 0.01
94 4 0.00
95 29 0.01
96 21 0.01
97 19 0.01
98 55 0.02
99 16 0.01
100 9 0.00
101 7 0.00
102 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.23
Consensus pattern (92 bp):
AAGACAAGATCTACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
TCGATCCCCTCCGCTGCCAAATACAGG
Found at i:1635 original size:46 final size:46
Alignment explanation
Indices: 1561--3116 Score: 1923
Period size: 46 Copynumber: 33.9 Consensus size: 46
1551 NNNNNNNNNN
* *
1561 CAAGATCTGCTATCTTCAATCTCCTCCGCTGCCAAATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* *
1607 CAAGATCTGCTATCTTCGATCCCTTCCGCTGCCAAATTCAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * *
1653 CAAGATCTGATATCTTCGATCTCTTCCGCTGCCAAATAAAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * *
1699 GAAGATCTACTATCATCGATCTCCTCCG-TAGCCAAATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCT-GCCAAATACAGGAAGA
* * *
1745 CAAGATCTGATATCTTCGATCCCTTCTGCTGCCAAATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * *
1791 CAAGATCTACTATCTTCGATCCCCACCTCTG-CAAATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * *
1836 CAAGATTTGCTATCTTCGACCCCCTCCGCTGCCAAATACTGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * * * * * *
1882 CAGGATCTGTTATCCTCGATCTCTTCCACTGCCAAATACAAGAATA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * *
1928 CAAGATTTGATATCTTCGATCCCCTCCGCTGCTAGATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * *
1974 AAAGATATGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
** ** *
2020 CAAGATCTGAGATCTTCGATCTGCTCCGCTGCAAAATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* *
2066 CAAGATCTGATATCTTCGATCCACTCCGCTGCCAAATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
*
2112 CAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * * * *
2158 CAAGATCTGATATCTTCGATCCCTTTCGCTGCCAAATTCAAGAAAA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * *
2204 CAAGATCTGATATCTTTGATCCCCTCTGCTGCCAAATACCGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * *
2250 CAAGATCTGCTGTCGTCGATCCCCTCCGCAGCCAAATATAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* ** * * *
2296 CAAGAACTAATATCTTCGATCCCTTCCGCTGCCAAATATAGGATGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * *
2342 CAAGATCTACTATCTTCGATCCCCACCTC-CCCAAATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* *
2387 CAAGATTTGCTATCTTCGACCCCCTCCGCTGCCAAATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * * * *
2433 CAGGATCTGCTATCCTCGATCTCTTCCACTGCCAAATACAGGAATA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * * *
2479 CAATATTTGATATCTTCGATCCCCTCCGCTGCTAGATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* *
2525 CAAGATCTGCTATCTTCAATCCCCTCCGCTGCCAAATATAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* ** * * *
2571 TAAGATCTGAGATCTTCGATCCGCTCCGCTACAAAATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * *
2617 CAAGATCTGATATCTTCGATCCACTCCGCTGCCAAATATAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* *
2663 CAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAAAACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * ** *
2709 CAAGATCTGATATCTTCGATCCCTTTCGCTGCCAAATTTAGGAAAA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * *
2755 CAAGATCTGATATCTTCGATCCCCTCTGCTGCCAAATACCGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
*
2801 CAAGATCTGCTATCGTCGATCCCCTCCGCTGCCAAATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* ** *
2847 CAAGATCTGCTATCTTCGATCCACTTTGCTGGCAAATACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * *
2893 CCAGATCTGCTATGTTCGATCCCCTCCGCTACCAATTACAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * *
2939 CAAGATCAGCTATCTTCGATCCCCTCTGCTGCCAAATAGAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * * *
2985 CAAGATCTGCTATCTTCGATCCCTTCCGCTGTCGAATTCAGGAAGA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* *** *
3031 CAAGATCTACTATCTTCGATCCCCTCTATTGCCAAATACAGGAACA
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
* * *
3077 CAAGATCTGCTATCTTCAATCCCC-CCACTACCAAATACAG
1 CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAG
3117 NNNNNNNNNN
Statistics
Matches: 1286, Mismatches: 220, Indels: 9
0.85 0.15 0.01
Matches are distributed among these distances:
45 91 0.07
46 1194 0.93
47 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (46 bp):
CAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGA
Found at i:3287 original size:46 final size:46
Alignment explanation
Indices: 3220--3612 Score: 561
Period size: 46 Copynumber: 8.5 Consensus size: 46
3210 NNNNNNNTGG
3220 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGC
* * *
3266 TATCTTCGATCCCCTCCGCTGCCAAATACATGAAGACAAGAGCTGA
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGC
* **
3312 TATCTTCAATCCTTTCCGCTGCCAAATACAGGAAGACAAGATCTGC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGC
* * *
3358 TATCTTCGATCCCCTCCACTGCCAAAGACATGAAGACAAGATCTGC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGC
* * * *
3404 TACCGTCGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGA
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGC
* * *
3450 TATCCTCGATCCCCTCCGCTGCCAAATACAGGAAGCCAATATCTGC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGC
* * * * * *
3496 TATTTTCGATCCCCTCCCCTGCCAAATACAAGAGGACCAGATTTGC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGC
* **
3542 TATCTTCGTTCCCCTCCGCTGCCAAATACAGGAAGACAAGATCAAC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGC
3588 TATCTTCGATCCCCTCCGCTGCCAA
1 TATCTTCGATCCCCTCCGCTGCCAA
3613 NNNNNNNNNN
Statistics
Matches: 300, Mismatches: 47, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 300 1.00
ACGTcount: A:0.28, C:0.33, G:0.16, T:0.23
Consensus pattern (46 bp):
TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGC
Found at i:3780 original size:46 final size:45
Alignment explanation
Indices: 3713--4099 Score: 549
Period size: 46 Copynumber: 8.4 Consensus size: 45
3703 NNNNNNNNNN
*
3713 TACAGGAAGACAAGATCTGCTATCTTCGATCCCTTCCACTGCCAAA
1 TACAGGAAGACAAGATCTGCTATCTTCGATCCC-TCCGCTGCCAAA
*
3759 TACAGGAAAACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAA
1 TACAGGAAGACAAGATCTGCTATCTTCGAT-CCCTCCGCTGCCAAA
*
3805 TACAGGAAGACAAGATCTGATATCTTCGATCCCTTCCGCTGCCAAA
1 TACAGGAAGACAAGATCTGCTATCTTCGATCCC-TCCGCTGCCAAA
* *
3851 TAGAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCACTGCCAAA
1 TACAGGAAGACAAGATCTGCTATCTTCGATC-CCTCCGCTGCCAAA
* * *
3897 GACATGAAGACAAGATCTGCTATCTTCGATCTCCTCCACTGCCAAA
1 TACAGGAAGACAAGATCTGCTATCTTCGATC-CCTCCGCTGCCAAA
* * * * *
3943 GACATGAAGACAAGATCTGCTACCGTCGATCCCCTCTGCTGCCAAA
1 TACAGGAAGACAAGATCTGCTATCTTCGAT-CCCTCCGCTGCCAAA
* *
3989 TACAGGAAGACAAGATCTGATATCCTCGATCCCCTCCGCTGCCAAA
1 TACAGGAAGACAAGATCTGCTATCTTCGAT-CCCTCCGCTGCCAAA
*
4035 TACAGCAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGCCAAA
1 TACAGGAAGACAAGATCTGCTATCTTCGATC-CCTCCGCTGCCAAA
*
4081 TACAGGCAGACAAGATCTG
1 TACAGGAAGACAAGATCTG
4100 NNNNNNNNNN
Statistics
Matches: 311, Mismatches: 25, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
45 4 0.01
46 301 0.97
47 6 0.02
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.22
Consensus pattern (45 bp):
TACAGGAAGACAAGATCTGCTATCTTCGATCCCTCCGCTGCCAAA
Found at i:4272 original size:46 final size:46
Alignment explanation
Indices: 4200--4630 Score: 639
Period size: 46 Copynumber: 9.4 Consensus size: 46
4190 NNNNNNNNNN
* * **
4200 CAGGCAGACAAGATCTGATATCTTCGATCCCCTCTACTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
4246 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * * *
4292 CAGGAAGACAAGATTTGCTATCTTCGATCTCCTCCGCAGCCATATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
4338 CAGGAAGACAAGATCTGCTATCTTCGATCCCTTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
4384 CAGGAAGACAAGATTTGATATCTTCGATCCCCTCCGCTGCCAGATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
*
4430 CAGAAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* *
4476 CAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGTTGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
* * *
4522 AAGGAAGACAAGATATGCTATCTTCGATCTCCTCCG-TAGCCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCT-GCCAAATA
* * **
4568 CAGGAAGACAAGATCTGATATCTTCAATCCCCTCCGCTATCAAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
4614 CAGGAAGACAAGATCTG
1 CAGGAAGACAAGATCTG
4631 NNNNNNNNNN
Statistics
Matches: 350, Mismatches: 33, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.00
46 348 0.99
47 1 0.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (46 bp):
CAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATA
Found at i:7016 original size:46 final size:46
Alignment explanation
Indices: 6946--7274 Score: 487
Period size: 46 Copynumber: 7.2 Consensus size: 46
6936 NNNNNNNNNN
* * * * *
6946 GAAGACAAGATCTGCTATCTTCGATCTCCTCCACTACCAAAGACAT
1 GAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAG
* *
6992 GAAGACAACATCTGCTATCATCGATCCCCTCCGCTGCCAAATACAG
1 GAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAG
*
7038 GAAGACAAGATCTGCTATCGTCGATCCCCTCCGCTGCCAAATACAG
1 GAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAG
* **
7084 GAAGACAAGATCTGCTATCTTCGATCCCCTCCACTGCCAAATTTAG
1 GAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAG
* * * *
7130 GAAGGCAAGATTTGCTATCTTCGATCCCTTTCGCTGCCAAATACAG
1 GAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAG
* * *
7176 GAAGAAAAGATCTGATATCTTCGATCCCCTCTGCTGCCAAATACAG
1 GAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAG
*
7222 GAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATAGAG
1 GAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAG
7268 GAAGACA
1 GAAGACA
7275 GGNNNNNNNN
Statistics
Matches: 252, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 252 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (46 bp):
GAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAG
Found at i:8041 original size:138 final size:138
Alignment explanation
Indices: 7791--8414 Score: 809
Period size: 138 Copynumber: 4.6 Consensus size: 138
7781 NNNNNNCTGC
*
7791 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCGATCCCCTCCGC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGC
* * * *
7856 TGCCAAA-AGCAGAAAGACAAGATCT-ACAATC-TCTGATCCCCTGCGCTGCCAAATACA-AAAT
66 TGCCAAATA-CAGGAAGACAAGATCTGA-TATCTTC-GATCCCCTCCGCTGCCAAATACAGGAA-
7917 GACAAGATCTGA
127 GACAAGATCTGA
* * *
7929 TATCTTCGATCTCCTCCGTTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCAC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGC
* * * * *
7994 TGCCAAATACAGGAAGACAAGATTTGATATCTTCAATCCCTTTCGCTGCCAAATTCAGGAAGACA
66 TGCCAAATACAGGAAGACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
8059 AGATCTGA
131 AGATCTGA
* *
8067 TATCTTCGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCGTCGATCCCCTCCGC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGC
* *
8132 TGCCAAATACAGGAAGAAAAGATCTGATATCATCGATCCCCTCCGCTGCCAAATACAGGAAGAC-
66 TGCCAAATACAGGAAGACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
8196 ---TC-G-
131 AGATCTGA
* * * *
8199 -A---TC--T--CCTCCGCAGCCAAATACATGAAGACAAGATCTGATATCTTCAATCCCCTCCGC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGC
** *
8256 TATCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
66 TGCCAAATACAGGAAGACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
* *
8321 AGATATGC
131 AGATCTGA
* * *
8329 TATCCTCGAT-CCCTCCGCTGCCAAATACAGGAAGAGAAGATCTGCTATCTTCGATCCCCTTCGC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGC
*
8393 TGCAAAATACAGGAAGACAAGA
66 TGCCAAATACAGGAAGACAAGA
8415 NNNNNNNNNN
Statistics
Matches: 424, Mismatches: 45, Indels: 35
0.84 0.09 0.07
Matches are distributed among these distances:
124 106 0.25
126 1 0.00
128 3 0.01
129 1 0.00
131 2 0.00
133 1 0.00
134 4 0.01
136 1 0.00
137 66 0.16
138 233 0.55
139 6 0.01
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (138 bp):
TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGC
TGCCAAATACAGGAAGACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
AGATCTGA
Found at i:8202 original size:46 final size:46
Alignment explanation
Indices: 7791--8195 Score: 584
Period size: 46 Copynumber: 8.8 Consensus size: 46
7781 NNNNNNCTGC
7791 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGA
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGA
*
7837 TATCTTCGATCCCCTCCGCTGCCAAA-AGCAGAAAGACAAGATCT-A
1 TATCTTCGATCCCCTCCGCTGCCAAATA-CAGGAAGACAAGATCTGA
* * *
7882 CAATC-TCTGATCCCCTGCGCTGCCAAATACA-AAATGACAAGATCTGA
1 -TATCTTC-GATCCCCTCCGCTGCCAAATACAGGAA-GACAAGATCTGA
* * *
7929 TATCTTCGATCTCCTCCGTTGCCAAATACAGGAAGACAAGATCTGC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGA
* *
7975 TATCTTCGATCCCCTCCACTGCCAAATACAGGAAGACAAGATTTGA
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGA
* * * *
8021 TATCTTCAATCCCTTTCGCTGCCAAATTCAGGAAGACAAGATCTGA
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGA
* *
8067 TATCTTCGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGA
* *
8113 TATCGTCGATCCCCTCCGCTGCCAAATACAGGAAGAAAAGATCTGA
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGA
*
8159 TATCATCGATCCCCTCCGCTGCCAAATACAGGAAGAC
1 TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGAC
8196 TCGATCTCCT
Statistics
Matches: 319, Mismatches: 32, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
45 7 0.02
46 306 0.96
47 6 0.02
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.23
Consensus pattern (46 bp):
TATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGA
Found at i:8207 original size:32 final size:32
Alignment explanation
Indices: 8164--8227 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
8154 TCTGATATCA
*
8164 TCGATCCCCTCCGCTGCCAAATACAGGAAGAC
1 TCGATCCCCTCCGCAGCCAAATACAGGAAGAC
* *
8196 TCGATCTCCTCCGCAGCCAAATACATGAAGAC
1 TCGATCCCCTCCGCAGCCAAATACAGGAAGAC
8228 AAGATCTGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.30, C:0.36, G:0.17, T:0.17
Consensus pattern (32 bp):
TCGATCCCCTCCGCAGCCAAATACAGGAAGAC
Found at i:8234 original size:32 final size:32
Alignment explanation
Indices: 8166--8234 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 32
8156 TGATATCATC
* * **
8166 GATCCCCTCCGCTGCCAAATACAGGAAGACTC
1 GATCTCCTCCGCAGCCAAATACAGGAAGACAA
*
8198 GATCTCCTCCGCAGCCAAATACATGAAGACAA
1 GATCTCCTCCGCAGCCAAATACAGGAAGACAA
8230 GATCT
1 GATCT
8235 GATATCTTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.33, G:0.17, T:0.17
Consensus pattern (32 bp):
GATCTCCTCCGCAGCCAAATACAGGAAGACAA
Found at i:8249 original size:78 final size:78
Alignment explanation
Indices: 8118--8273 Score: 240
Period size: 78 Copynumber: 2.0 Consensus size: 78
8108 TCTGCTATCG
* * *
8118 TCGATCCCCTCCGCTGCCAAATACAGGAAGAAAAGATCTGATATCATCGATCCCCTCCGCTGCCA
1 TCGATCCCCTCCGCAGCCAAATACAGGAAGAAAAGATCTGATATCATCAATCCCCTCCGCTACCA
8183 AATACAGGAAGAC
66 AATACAGGAAGAC
* * * * *
8196 TCGATCTCCTCCGCAGCCAAATACATGAAGACAAGATCTGATATCTTCAATCCCCTCCGCTATCA
1 TCGATCCCCTCCGCAGCCAAATACAGGAAGAAAAGATCTGATATCATCAATCCCCTCCGCTACCA
8261 AATACAGGAAGAC
66 AATACAGGAAGAC
8274 AAGATCTGCT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 70 1.00
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (78 bp):
TCGATCCCCTCCGCAGCCAAATACAGGAAGAAAAGATCTGATATCATCAATCCCCTCCGCTACCA
AATACAGGAAGAC
Found at i:8272 original size:46 final size:46
Alignment explanation
Indices: 8196--8414 Score: 323
Period size: 46 Copynumber: 4.8 Consensus size: 46
8186 ACAGGAAGAC
* * * *
8196 TCGATCTCCTCCGCAGCCAAATACATGAAGACAAGATCTGATATCT
1 TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* **
8242 TCAATCCCCTCCGCTATCAAATACAGGAAGACAAGATCTGCTATCT
1 TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* *
8288 TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATATGCTATCC
1 TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
*
8334 TCGAT-CCCTCCGCTGCCAAATACAGGAAGAGAAGATCTGCTATCT
1 TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
* *
8379 TCGATCCCCTTCGCTGCAAAATACAGGAAGACAAGA
1 TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
8415 NNNNNNNNNN
Statistics
Matches: 154, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 42 0.27
46 112 0.73
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (46 bp):
TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCT
Found at i:8292 original size:124 final size:124
Alignment explanation
Indices: 8072--8319 Score: 388
Period size: 124 Copynumber: 2.0 Consensus size: 124
8062 TCTGATATCT
* * * * *
8072 TCGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGCTATCGTCGATCCCCTCCGCTGCCA
1 TCGATCCCCTCCGCAGCCAAATACAGGAAGACAAGATCTGATATCGTCAATCCCCTCCGCTACCA
8137 AATACAGGAAGAAAAGATCTGATATCATCGATCCCCTCCGCTGCCAAATACAGGAAGAC
66 AATACAGGAAGAAAAGATCTGATATCATCGATCCCCTCCGCTGCCAAATACAGGAAGAC
* * * *
8196 TCGATCTCCTCCGCAGCCAAATACATGAAGACAAGATCTGATATCTTCAATCCCCTCCGCTATCA
1 TCGATCCCCTCCGCAGCCAAATACAGGAAGACAAGATCTGATATCGTCAATCCCCTCCGCTACCA
* * *
8261 AATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGAC
66 AATACAGGAAGAAAAGATCTGATATCATCGATCCCCTCCGCTGCCAAATACAGGAAGAC
8320 AAGATATGCT
Statistics
Matches: 112, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
124 112 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (124 bp):
TCGATCCCCTCCGCAGCCAAATACAGGAAGACAAGATCTGATATCGTCAATCCCCTCCGCTACCA
AATACAGGAAGAAAAGATCTGATATCATCGATCCCCTCCGCTGCCAAATACAGGAAGAC
Found at i:8340 original size:170 final size:169
Alignment explanation
Indices: 8041--8363 Score: 538
Period size: 170 Copynumber: 1.9 Consensus size: 169
8031 CCCTTTCGCT
* * * *
8041 GCCAAATTCAGGAAGACAAGATCTGATATCTTCGATCCCCTCTGCTGCCAAATACAGGAAGACAA
1 GCCAAATACAGGAAGACAAGATCTGATATCTTCAATCCCCTCCGCTACCAAATACAGGAAGACAA
*
8106 GATCTGCTATCGTCGATCCCCTCCGCTGCCAAATACAGGAAGAAAAGATCTGATATCATCGATCC
66 GATCTGCTATCGTCGATCCCCTCCGCTGCCAAATACAGGAAGAAAAGATATGATATCATCGAT-C
8171 CCTCCGCTGCCAAATACAGGAAGACTCGATCTCCTCCGCA
130 CCTCCGCTGCCAAATACAGGAAGACTCGATCTCCTCCGCA
* *
8211 GCCAAATACATGAAGACAAGATCTGATATCTTCAATCCCCTCCGCTATCAAATACAGGAAGACAA
1 GCCAAATACAGGAAGACAAGATCTGATATCTTCAATCCCCTCCGCTACCAAATACAGGAAGACAA
* * * *
8276 GATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATATGCTATCCTCGATCC
66 GATCTGCTATCGTCGATCCCCTCCGCTGCCAAATACAGGAAGAAAAGATATGATATCATCGATCC
8341 CTCCGCTGCCAAATACAGGAAGA
131 CTCCGCTGCCAAATACAGGAAGA
8364 GAAGATCTGC
Statistics
Matches: 142, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
169 25 0.18
170 117 0.82
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (169 bp):
GCCAAATACAGGAAGACAAGATCTGATATCTTCAATCCCCTCCGCTACCAAATACAGGAAGACAA
GATCTGCTATCGTCGATCCCCTCCGCTGCCAAATACAGGAAGAAAAGATATGATATCATCGATCC
CTCCGCTGCCAAATACAGGAAGACTCGATCTCCTCCGCA
Found at i:8380 original size:91 final size:92
Alignment explanation
Indices: 8196--8414 Score: 323
Period size: 91 Copynumber: 2.4 Consensus size: 92
8186 ACAGGAAGAC
* * * * * *
8196 TCGATCTCCTCCGCAGCCAAATACATGAAGACAAGATCTGATATCTTCAATCCCCTCCGCTATCA
1 TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATATGATATCCTCAATCCCCTCCGCTACCA
8261 AATACAGGAAGACAAGATCTGCTATCT
66 AATACAGGAAGACAAGATCTGCTATCT
* * *
8288 TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATATGCTATCCTCGAT-CCCTCCGCTGCCA
1 TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATATGATATCCTCAATCCCCTCCGCTACCA
*
8352 AATACAGGAAGAGAAGATCTGCTATCT
66 AATACAGGAAGACAAGATCTGCTATCT
* *
8379 TCGATCCCCTTCGCTGCAAAATACAGGAAGACAAGA
1 TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
8415 NNNNNNNNNN
Statistics
Matches: 115, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 71 0.62
92 44 0.38
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (92 bp):
TCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATATGATATCCTCAATCCCCTCCGCTACCA
AATACAGGAAGACAAGATCTGCTATCT
Found at i:8898 original size:46 final size:46
Alignment explanation
Indices: 8825--9171 Score: 552
Period size: 46 Copynumber: 7.5 Consensus size: 46
8815 NNNNNNNNNN
* *
8825 AAGATCTGCTATCTTCGATCTCCTCCGCTGCCAAATACAGGCAGAC
1 AAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGAC
* *
8871 AAGATCTGCTATCTTCGATCCCTTCCGCTGCCAAATACAGGCAGAC
1 AAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGAC
* **
8917 AAGATCTGATATCTTCGATCCCCTCTACTGCCAAATACAGGAAGAC
1 AAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGAC
* *
8963 AAGATCTGCTATCTT-GTATCCCTTCCGCTCCCAAATACAGGAAGAC
1 AAGATCTGCTATCTTCG-ATCCCCTCCGCTGCCAAATACAGGAAGAC
* *
9009 AAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAAAC
1 AAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGAC
*
9055 AAGATCTGCTATATTCGATCCCCTCCGCTGCCAAATACAGGAAGAC
1 AAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGAC
**
9101 AAGATCAACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGAC
1 AAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGAC
9147 AAGATCTGCTATCTTCGATCCCCTC
1 AAGATCTGCTATCTTCGATCCCCTC
9172 TNNNNNNNNN
Statistics
Matches: 275, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 273 0.99
47 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (46 bp):
AAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGAC
Found at i:9865 original size:46 final size:46
Alignment explanation
Indices: 9798--10728 Score: 1284
Period size: 46 Copynumber: 20.3 Consensus size: 46
9788 NNNNNNNNNN
* *
9798 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATAGAGGAAGACAGGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
* * * *
9844 TCTGCTATCTTCGATCTCCTCCACTGCCAAAGACATGAAGACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
* * *
9890 TCTGCTACCGTCGATCCCCTCTGCTGCCAAATACAGGAAGACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
* * *
9936 TCTGATATCCTCGATCCCCTCCGCTGCCAAATACAGCAAGACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
* *
9982 TCTGCTATCTTCGATCTCCTCCGCTGCCAAATACAGGCAGACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
* *
10028 TCTGCTATCTTCGATCCCTTCCGCTGCCAAATACAGGCAGACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
* **
10074 TCTGATATCTTCGATCCCCTCTACTGCCAAAT-CAGGTAAG-CAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGG-AAGACAAGA
* *
10119 TCTGCTATCTT-GTATCCCTTCCGCTCCCAAAATACAGGAAGACAAGA
1 TCTGCTATCTTCG-ATCCCCTCCGCTGCC-AAATACAGGAAGACAAGA
* * * *
10166 TCTGATATCTTCGATCCCCT-CGCTGCCAAAT-CA-AAAAAAACAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA-AGA
* * *
10210 TCTGCTATATTCGATCCCC-CTCGCTGCCAAAT-CAAGAAGACCAGA
1 TCTGCTATCTTCGATCCCCTC-CGCTGCCAAATACAGGAAGACAAGA
* *
10255 TTTGCTATCTTCGTTCCCCTCCGCTGCCAAATACAGGAAGACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
**
10301 TCAACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
* *
10347 TCTGCTATCTTCGATCCCCTCTGCTGCCAAATACAGGAAAACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
* * * *
10393 TCTGATATCCTAGATCCCCTCCGCTGCCAAATACAGGAAAACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
* * * * * *
10439 TCTACTATATTCGATCCCCTCTGCTGCCAAATACAAGAGGACCAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
* *
10485 TTTGCTATCTTCGTTCCCCTCCGCTGCCAAATACAGGAAGACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
** *
10531 TCAACTATCTTCGATCCCCTCCGCTGCCTAATACAGGAAGACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
* *
10577 TCTGCTATCTTCGATCCCTTCCGCTGCCAAATACAGGAAAACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
*
10623 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAAACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
10669 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
1 TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
*
10715 TCTGATATCTTCGA
1 TCTGCTATCTTCGA
10729 NNNNNNNNNN
Statistics
Matches: 778, Mismatches: 95, Indels: 24
0.87 0.11 0.03
Matches are distributed among these distances:
43 4 0.01
44 23 0.03
45 77 0.10
46 648 0.83
47 25 0.03
48 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.23
Consensus pattern (46 bp):
TCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGA
Found at i:11141 original size:138 final size:138
Alignment explanation
Indices: 10893--11785 Score: 1091
Period size: 138 Copynumber: 6.6 Consensus size: 138
10883 NNNNNAGAAA
* * * * *
10893 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAAAACAGAAAGACAAGATCT-ACAATCTTT
1 ACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGA-TATCTTC
* *
10957 GATCCCCTGCGCTGCCAAATACA-AAATGACAAGATCTGATATCTTCGATCTCCTCCGCTGCCAA
65 GATCCCCTCCGCTGCCAAATACAGGAA-GACAAGATCTGATATCTTCGATCTCCTCCGCTGCCAA
11021 ATACAGGAAG
129 ATACAGGAAG
* * *
11031 ACAAGATCTGCTATCTTCGATCCCCTCCACTGCCAAATACAGGAAGACAAGATTTGATATCTTCA
1 ACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG
* * * * *
11096 ATCCCTTTCGCTGCCAAATTCAGGAAGACAAGATCTGATATCTTCGATCCCCTCTGCTGCCAAAT
66 ATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCGATCTCCTCCGCTGCCAAAT
*
11161 ATAGGAAG
131 ACAGGAAG
* * * *
11169 ACAAGATCTGCTATCGTCGATCCCCTCCGCTACCAAATACAGGAAGAAAAGATCTGATATCATCG
1 ACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG
* * *
11234 ATACCCTCCGCTACCAAATACA-G--G---A-A---G--A-C-TCGATCTCCTCCGCAGCCAAAT
66 ATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCGATCTCCTCCGCTGCCAAAT
*
11285 ACATGAAG
131 ACAGGAAG
* * * ** * *
11293 ACAAGATCTGATATCTTCAATCCCCTCCACTATCAGATACAGGAAGACAAGATCTGCTATCTTCG
1 ACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG
* * * *
11358 ATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTTCGCTGCAAAAT
66 ATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCGATCTCCTCCGCTGCCAAAT
11423 ACAGGAAG
131 ACAGGAAG
* * *
11431 ACAAGATCTGCTCTCGTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGTTATCTTCG
1 ACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG
* ** * * *
11496 ATCCCCTCCACTGCCAAATTTAGGAAGGCAAGATTTGCTATCTTCGATC-CCTTCCGCTGCCAAA
66 ATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCGATCTCC-TCCGCTGCCAAA
11560 TACAGGAAG
130 TACAGGAAG
* * * * * * *
11569 AAAAGATCTGATATCTTCGATCCCCTCTGCTGCCAGATACAGGAAGATAAGATCTGCTATTTTCG
1 ACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG
* * * * *
11634 ATCCCCTTCGCTGCCAAATAGAGGAAGACAAGATCTGTTATCTTCGATCTCCTCCACTGCCAAAG
66 ATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCGATCTCCTCCGCTGCCAAAT
*
11699 ACATGAAG
131 ACAGGAAG
* * * *
11707 ACAAGATCTGCTACCGTCGATCCCCTCTGCTGCCAAATACAGGAAGACAAGATCTGATATCCTCG
1 ACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG
11772 ATCCCCTCCGCTGC
66 ATCCCCTCCGCTGC
11786 NNNNNNNNNN
Statistics
Matches: 644, Mismatches: 93, Indels: 36
0.83 0.12 0.05
Matches are distributed among these distances:
124 101 0.16
125 2 0.00
126 1 0.00
127 1 0.00
128 1 0.00
130 1 0.00
131 2 0.00
132 1 0.00
134 1 0.00
135 1 0.00
136 1 0.00
137 4 0.01
138 522 0.81
139 5 0.01
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (138 bp):
ACAAGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCG
ATCCCCTCCGCTGCCAAATACAGGAAGACAAGATCTGATATCTTCGATCTCCTCCGCTGCCAAAT
ACAGGAAG
Found at i:11269 original size:46 final size:46
Alignment explanation
Indices: 10893--11785 Score: 528
Period size: 46 Copynumber: 19.7 Consensus size: 46
10883 NNNNNAGAAA
* *
10893 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAAAACAGAAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * * *
10939 ACAAGATCT-ACAATCTTTGATCCCCTGCGCTGCCAAATACA-AAATG
1 ACAAGATCTGA-TATCTTCGATCCCCTCCGCTGCCAAATACAGGAA-G
*
10985 ACAAGATCTGATATCTTCGATCTCCTCCGCTGCCAAATACAGGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* *
11031 ACAAGATCTGCTATCTTCGATCCCCTCCACTGCCAAATACAGGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * * * *
11077 ACAAGATTTGATATCTTCAATCCCTTTCGCTGCCAAATTCAGGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* *
11123 ACAAGATCTGATATCTTCGATCCCCTCTGCTGCCAAATATAGGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * *
11169 ACAAGATCTGCTATCGTCGATCCCCTCCGCTACCAAATACAGGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * * *
11215 AAAAGATCTGATATCATCGATACCCTCCGCTACCAAATACAGGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * * ** * * *
11261 AC----TC-GATCTCCTCCGCAGCCAAATAC-ATG---AAGAC---AAG
1 ACAAGATCTGATAT-CTTCG-ATCC-CCTCCGCTGCCAAATACAGGAAG
* * * ** * * * * *
11298 ATCTGATATCTTCA-ATC--CCCTCCACTATCAGAT-ACAGGAAGAC---AAG
1 A-C-AAGATC-TGATATCTTCGATCC-C-CTCCGCTGCCA--AATACAGGAAG
* *** ** * ** * *
11344 ATC-TGCTATCTTCGATC--CCCTCCGCTGCCAAAT-ACAGGAAGAC---AAG
1 A-CAAG--ATCTGATATCTTCGATCCCCT-CC-GCTGCCA--AATACAGGAAG
* * * * * * *
11390 ATC-TG--CT-ATCTTCGATC--CCCTTC-G--CTGCAAAATACAGGAAG
1 A-CAAGATCTGAT-ATC-TTCGATCC-CCTCCGCTGCCAAATACAGGAAG
* * *
11431 ACAAGATCTGCTCTCGTCGATCCCCTCCGCTGCCAAATACAGGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * **
11477 ACAAGATCTGTTATCTTCGATCCCCTCCACTGCCAAATTTAGGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * * *
11523 GCAAGATTTGCTATCTTCGATCCCTTCCGCTGCCAAATACAGGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * *
11569 AAAAGATCTGATATCTTCGATCCCCTCTGCTGCCAGATACAGGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * * * *
11615 ATAAGATCTGCTATTTTCGATCCCCTTCGCTGCCAAATAGAGGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * * * *
11661 ACAAGATCTGTTATCTTCGATCTCCTCCACTGCCAAAGACATGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
* * * *
11707 ACAAGATCTGCTACCGTCGATCCCCTCTGCTGCCAAATACAGGAAG
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
*
11753 ACAAGATCTGATATCCTCGATCCCCTCCGCTGC
1 ACAAGATCTGATATCTTCGATCCCCTCCGCTGC
11786 NNNNNNNNNN
Statistics
Matches: 673, Mismatches: 129, Indels: 90
0.75 0.14 0.10
Matches are distributed among these distances:
37 4 0.01
38 5 0.01
39 1 0.00
40 9 0.01
41 12 0.02
42 13 0.02
43 13 0.02
44 8 0.01
45 8 0.01
46 597 0.89
47 3 0.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (46 bp):
ACAAGATCTGATATCTTCGATCCCCTCCGCTGCCAAATACAGGAAG
Found at i:11301 original size:32 final size:32
Alignment explanation
Indices: 11238--11301 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
11228 TCATCGATAC
**
11238 CCTCCGCTACCAAATACAGGAAGACTCGATCT
1 CCTCCGCTACCAAATACAGGAAGACAAGATCT
*
11270 CCTCCGC-AGCCAAATACATGAAGACAAGATCT
1 CCTCCGCTA-CCAAATACAGGAAGACAAGATCT
11302 GATATCTTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.34, C:0.33, G:0.16, T:0.17
Consensus pattern (32 bp):
CCTCCGCTACCAAATACAGGAAGACAAGATCT
Found at i:11319 original size:78 final size:78
Alignment explanation
Indices: 11185--11340 Score: 215
Period size: 78 Copynumber: 2.0 Consensus size: 78
11175 TCTGCTATCG
* *
11185 TCGATCCCCTCCGCTACCAAATACAGGAAGAAAAGATCTGATATCATCGATACCCTCCGCTACCA
1 TCGATCCCCTCCGCTACCAAATACAGGAAGAAAAGATCTGATATCATCAATACCCTCCACTACCA
11250 AATACAGGAAGAC
66 AATACAGGAAGAC
* * * * * *
11263 TCGATCTCCTCCGC-AGCCAAATACATGAAGACAAGATCTGATATCTTCAATCCCCTCCACTATC
1 TCGATCCCCTCCGCTA-CCAAATACAGGAAGAAAAGATCTGATATCATCAATACCCTCCACTACC
*
11327 AGATACAGGAAGAC
65 AAATACAGGAAGAC
11341 AAGATCTGCT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
77 1 0.01
78 67 0.99
ACGTcount: A:0.35, C:0.31, G:0.15, T:0.20
Consensus pattern (78 bp):
TCGATCCCCTCCGCTACCAAATACAGGAAGAAAAGATCTGATATCATCAATACCCTCCACTACCA
AATACAGGAAGAC
Found at i:12322 original size:46 final size:46
Alignment explanation
Indices: 12262--12617 Score: 514
Period size: 46 Copynumber: 7.7 Consensus size: 46
12252 CAAGAGGACC
* *
12262 AGATTTGCTATCTTCGTTCCCCTCCGCTGCCAAATACAGGAAGACA
1 AGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
**
12308 AGATCAACTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
1 AGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
* * ** *
12354 AGATCTGCTATCTTCGATCCCTTCCACCACCAAATACAGGAAAACA
1 AGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
* * *
12400 AGATCTACTATCTTCGATCCCCTCCGCTGCCCAGTACAGGAAGACA
1 AGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
* * *
12446 AGATCTGATATCTTCGATCCCTTCCGCTGCCAAAGACAGGAAGACA
1 AGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
* * * *
12492 AGATCTGCTATCTTCTATCTCCTCCGCTGCTAAATACAGGAAGAAA
1 AGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
* * *
12538 AGATCTGTTATTTTCGATCCCCTCCGCTGCCAAATAAAGGAAGACA
1 AGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
12584 AGATCTGCTATCTTCGATCCCCTCCGCTGCCAAA
1 AGATCTGCTATCTTCGATCCCCTCCGCTGCCAAA
Statistics
Matches: 269, Mismatches: 41, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 269 1.00
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (46 bp):
AGATCTGCTATCTTCGATCCCCTCCGCTGCCAAATACAGGAAGACA
Done.