Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_39 ID=scaffold_39-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  29075

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
697--748
21
2.4
21
81
12
61
23
19
1
55
1.53
3978--4026
14
3.5
14
74
25
50
79
18
0
2
0.83
3983--4022
21
1.9
21
94
0
71
85
12
0
2
0.71
4986--5024
9
4.1
10
83
9
55
23
10
15
51
1.73
5321--5937
206
3.0
206
94
0
1074
34
17
16
31
1.92
8029--8066
11
3.5
11
92
0
58
50
0
18
31
1.47
9569--9738
60
2.8
60
91
1
261
4
35
6
54
1.45
9569--9819
12
20.8
12
80
7
201
6
36
5
51
1.51
9897--9936
14
2.9
14
81
3
55
0
40
0
60
0.97
12620--12646
11
2.5
11
100
0
54
0
0
7
92
0.38
12616--12647
17
1.9
16
93
6
55
0
0
9
90
0.45
12612--12645
10
3.3
10
88
8
50
0
0
11
88
0.52
13339--13365
1
27.0
1
100
0
54
0
0
0
100
0.00
16481--16778
150
2.0
150
91
0
488
34
11
20
33
1.89
18137--18176
17
2.4
17
95
0
71
17
20
5
57
1.58
19355--19415
20
3.0
20
90
0
95
49
19
16
14
1.80
24175--24226
22
2.4
22
90
0
77
25
23
21
30
1.99
26556--26596
12
3.4
12
93
0
73
39
0
60
0
0.96
26562--26597
14
2.6
14
95
0
63
41
0
58
0
0.98

Tables:   1

The End!