Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_391 ID=scaffold_391-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8099
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.29

Warning! 548 characters in sequence are not A, C, G, or T


Found at i:1497 original size:2 final size:2

Alignment explanation


    Indices: 1490--1522  Score: 57
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       1480 CATTCCTTTT

                        *                                    
       1490 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1523 TTTTATGTAT


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48


Consensus pattern (2 bp):   
TA

Done.