genome.fa.s39.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_40 ID=scaffold_40-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  26313

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3326--3599	152	1.8	150	89	2	431	32	10	11	44	1.76
4597--4667	38	1.9	37	85	5	99	45	9	7	38	1.65
4644--4984	18	19.0	18	67	15	86	45	11	12	31	1.77
4767--4988	35	6.3	34	76	12	191	44	10	13	31	1.78
4767--4988	18	12.5	17	75	14	175	44	10	13	31	1.78
4600--5002	36	11.2	35	69	17	191	43	11	12	33	1.77
5126--5184	20	3.1	19	80	9	66	37	10	15	37	1.81
5142--5188	20	2.3	21	85	3	69	40	8	12	38	1.74
5344--5413	23	3.0	23	74	21	65	68	2	0	28	1.04
5536--5600	6	11.2	6	72	18	57	0	20	0	80	0.72
5535--5600	18	3.8	18	88	4	91	0	19	0	80	0.72
5554--5598	24	1.9	23	90	4	72	0	15	0	84	0.62
5735--5768	17	2.0	17	88	11	52	0	14	8	76	1.01
5880--5934	12	4.7	12	82	13	62	0	20	0	80	0.72
5873--5939	8	8.1	8	79	14	66	0	19	0	80	0.71
5873--5940	16	4.3	16	90	7	95	0	20	0	79	0.73
6036--6089	10	5.5	10	77	14	51	0	12	5	81	0.85
6036--6090	20	2.6	22	83	8	71	0	12	5	81	0.84
6051--6098	21	2.3	22	78	7	55	2	10	8	79	1.02
6416--6522	29	3.6	30	78	3	101	39	6	22	31	1.80
13714--13757	21	2.0	20	87	12	61	20	0	4	75	0.98
15894--15960	18	3.8	18	71	13	59	37	5	4	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19400--19507	8	12.5	8	67	18	56	75	4	14	5	1.16
19471--19507	16	2.2	16	95	4	65	81	0	16	2	0.81
20846--21871	50	20.6	50	71	5	419	32	23	19	24	1.98
20894--21917	100	10.2	100	86	2	1348	32	23	20	23	1.98
20889--21971	300	3.6	301	90	2	1542	32	23	20	24	1.98
22074--22479	132	3.1	132	89	0	614	31	18	23	26	1.98
22922--22966	23	2.0	23	86	0	63	17	48	13	20	1.80
24579--24616	16	2.4	16	90	0	58	36	7	2	52	1.45
24579--24639	18	3.5	18	74	12	56	34	8	4	52	1.53
26201--26257	26	2.2	26	93	0	96	28	12	17	42	1.85

Tables:   1

The End!