Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 113 of 198
Found at i:36084574 original size:165 final size:160
Alignment explanation
Indices: 36084249--36084561 Score: 418
Period size: 165 Copynumber: 1.9 Consensus size: 160
36084239 TCAAGTCAAG
** * *
36084249 TCAAGCATATGATTTTCAAATCTCAAAATCTAAAATATCTTCATTGCAAAACTCGCATAATTCTT
1 TCAAGCATACAATTTTCAAATCTCAAAATCTAAAATATCTTCATTGCAAAACTCACATAATTCGT
* * *
36084314 ATCTATAATTTTTATAGTCTTAGGAAATTAAGAGATTTGGCCTTTCAAATGAGTAGTGCAGAAAA
66 ATCTATAATTTTTATAGTCATAGGAAATAAAGAGAATTGGCCTTTCAAATGAGTAGTGCAGAAAA
*
36084379 TTTACAGATTCAGATTTTGAAGCATTGAAA
131 TTTACACATTCAGATTTTGAAGCATTGAAA
* *
36084409 TCAAGCATACAATTTTCAAAT-TGCAAATTCTAAGAATATTTTTCATTGCAAAAACTCACATAAT
1 TCAAGCATACAATTTTCAAATCT-CAAAATCTAA-AATA-TCTTCATTGC-AAAACTCACATAAT
* *
36084473 TCGTA-CTTATAA-TTTTAGTGAAGTCATATGAAATAAAGAGAATTGGCCTTTCAAATGATTAGT
62 TCGTATC-TATAATTTTTA-T--AGTCATAGGAAATAAAGAGAATTGGCCTTTCAAATGAGTAGT
36084536 GCAGAAAATTTACACATTCA-ATTTTG
123 GCAGAAAATTTACACATTCAGATTTTG
36084562 TAAGTGTTGA
Statistics
Matches: 133, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
159 1 0.01
160 28 0.21
161 4 0.03
162 15 0.11
163 23 0.17
164 6 0.05
165 56 0.42
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.35
Consensus pattern (160 bp):
TCAAGCATACAATTTTCAAATCTCAAAATCTAAAATATCTTCATTGCAAAACTCACATAATTCGT
ATCTATAATTTTTATAGTCATAGGAAATAAAGAGAATTGGCCTTTCAAATGAGTAGTGCAGAAAA
TTTACACATTCAGATTTTGAAGCATTGAAA
Found at i:36093006 original size:19 final size:20
Alignment explanation
Indices: 36092984--36093021 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
36092974 AATTAACTTG
36092984 GTTTAAATAAG-TTAATCAT
1 GTTTAAATAAGTTTAATCAT
* *
36093003 GTTTTAATTAGTTTAATCA
1 GTTTAAATAAGTTTAATCA
36093022 ATCTTTAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 9 0.56
20 7 0.44
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (20 bp):
GTTTAAATAAGTTTAATCAT
Found at i:36101866 original size:40 final size:40
Alignment explanation
Indices: 36101811--36101950 Score: 244
Period size: 40 Copynumber: 3.5 Consensus size: 40
36101801 TCAGAACGCT
*
36101811 GGCATTAAGCCTGCTAGACATTAAGCCTGTAAAGTTCACC
1 GGCATTAAGCCTGCTAGACATTAAGTCTGTAAAGTTCACC
*
36101851 GGCATTAAGCCTGCTAGACATTAAGTTTGTAAAGTTCACC
1 GGCATTAAGCCTGCTAGACATTAAGTCTGTAAAGTTCACC
* *
36101891 GGCGTTAAGCCTGCTAGATATTAAGTCTGTAAAGTTCACC
1 GGCATTAAGCCTGCTAGACATTAAGTCTGTAAAGTTCACC
36101931 GGCATTAAGCCTGCTAGACA
1 GGCATTAAGCCTGCTAGACA
36101951 CAGGACCTGA
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (40 bp):
GGCATTAAGCCTGCTAGACATTAAGTCTGTAAAGTTCACC
Found at i:36102644 original size:21 final size:21
Alignment explanation
Indices: 36102618--36102668 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
36102608 TAGACTTACC
36102618 TCGGACGATGAAAAATCAAAG
1 TCGGACGATGAAAAATCAAAG
36102639 TCGGACGATGAAAAATCAAAG
1 TCGGACGATGAAAAATCAAAG
36102660 TCGGACGAT
1 TCGGACGAT
36102669 TATTCGACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.25, T:0.16
Consensus pattern (21 bp):
TCGGACGATGAAAAATCAAAG
Found at i:36106437 original size:28 final size:28
Alignment explanation
Indices: 36106396--36106516 Score: 152
Period size: 28 Copynumber: 4.3 Consensus size: 28
36106386 TCAGTTAATT
* * * *
36106396 AGTAGCAGTCTGGGCCTGAGCCCTATAC
1 AGTAACAGTGTGGGCCTTAGCCCAATAC
*
36106424 AGCAACAGTGTGGGCCTTAGCCCAATAC
1 AGTAACAGTGTGGGCCTTAGCCCAATAC
* * *
36106452 AGTAATAATGTGGGCCTTAGCCCAATAT
1 AGTAACAGTGTGGGCCTTAGCCCAATAC
* *
36106480 AGTAACAGTATGGGCCTTAGCCCAATTC
1 AGTAACAGTGTGGGCCTTAGCCCAATAC
36106508 AGTAACAGT
1 AGTAACAGT
36106517 ACAATGCAGT
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 79 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (28 bp):
AGTAACAGTGTGGGCCTTAGCCCAATAC
Found at i:36106956 original size:27 final size:27
Alignment explanation
Indices: 36106812--36106977 Score: 165
Period size: 27 Copynumber: 6.1 Consensus size: 27
36106802 TATAACAGTT
* * *
36106812 ATTTTACCCAAT-GGGGGTATTTTGGTC
1 ATTTTACCC-ATCGAGGGTATTTCGATC
* *
36106839 ATTTTACCCTTCGAGGGTATTTCGATT
1 ATTTTACCCATCGAGGGTATTTCGATC
* * * *
36106866 ATTTTACCCTTTGGGGGTATTTCGGTC
1 ATTTTACCCATCGAGGGTATTTCGATC
* * *
36106893 ATTTTACCCTTTGGGGGTATTTC-AGTC
1 ATTTTACCCATCGAGGGTATTTCGA-TC
36106920 ATTTTACCCATCGAGGGTATTTCGATC
1 ATTTTACCCATCGAGGGTATTTCGATC
* * *
36106947 ATTTTACCCATCGAAGTTATTTCGGTC
1 ATTTTACCCATCGAGGGTATTTCGATC
36106974 ATTT
1 ATTT
36106978 GCCTACGAAT
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 118 0.98
28 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (27 bp):
ATTTTACCCATCGAGGGTATTTCGATC
Found at i:36106968 original size:81 final size:81
Alignment explanation
Indices: 36106812--36106977 Score: 233
Period size: 81 Copynumber: 2.0 Consensus size: 81
36106802 TATAACAGTT
** * * *
36106812 ATTTTACCCAATGGGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCGATTATTTTACCCTT
1 ATTTTACCCAATGGGGGTATTTCAGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCAT
* **
36106877 TGGGGGTATTTCGGTC
66 CGAAGGTATTTCGGTC
**
36106893 ATTTTACCCTTTGGGGGTATTTCAGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCAT
1 ATTTTACCCAATGGGGGTATTTCAGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCAT
*
36106958 CGAAGTTATTTCGGTC
66 CGAAGGTATTTCGGTC
36106974 ATTT
1 ATTT
36106978 GCCTACGAAT
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (81 bp):
ATTTTACCCAATGGGGGTATTTCAGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCAT
CGAAGGTATTTCGGTC
Found at i:36106975 original size:54 final size:53
Alignment explanation
Indices: 36106812--36106977 Score: 197
Period size: 54 Copynumber: 3.1 Consensus size: 53
36106802 TATAACAGTT
* * *
36106812 ATTTTACCCAATGGGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCGATT
1 ATTTTACCC-ATGGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTC
* * * *
36106866 ATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTTTGGGGGTATTTCAGTC
1 ATTTTACCC-ATGGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTC
* * * * *
36106920 ATTTTACCCATCGAGGGTATTTCGATCATTTTACCCATCGAAGTTATTTCGGTC
1 ATTTTACCCAT-GGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTC
36106974 ATTT
1 ATTT
36106978 GCCTACGAAT
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 1 0.01
54 93 0.99
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (53 bp):
ATTTTACCCATGGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTC
Found at i:36120779 original size:15 final size:17
Alignment explanation
Indices: 36120740--36120780 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
36120730 TGTTATTTGA
*
36120740 AATTTTATCCAACACTT
1 AATTTTATCCAACACTC
36120757 ACATTTTATCCAAC-C-C
1 A-ATTTTATCCAACACTC
36120773 AATTTTAT
1 AATTTTAT
36120781 TTTTTATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.32
16 1 0.05
17 2 0.09
18 12 0.55
ACGTcount: A:0.34, C:0.24, G:0.00, T:0.41
Consensus pattern (17 bp):
AATTTTATCCAACACTC
Found at i:36121532 original size:20 final size:20
Alignment explanation
Indices: 36121509--36121548 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
36121499 TCTCATACCA
* *
36121509 ACAAATATTCAATCATAATT
1 ACAAATAATAAATCATAATT
*
36121529 ACAATTAATAAATCATAATT
1 ACAAATAATAAATCATAATT
36121549 CATTCATAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (20 bp):
ACAAATAATAAATCATAATT
Found at i:36122911 original size:98 final size:98
Alignment explanation
Indices: 36122737--36122933 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
36122727 GTACAATAAA
* *
36122737 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACCATT
* *
36122802 CCTTTAGAATCCCAAACTTGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
36122835 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACCATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACCATT
36122900 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
36122933 A
1 A
36122934 TTATTTTTTA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACCATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:36125670 original size:45 final size:45
Alignment explanation
Indices: 36125608--36125946 Score: 189
Period size: 45 Copynumber: 7.7 Consensus size: 45
36125598 CGGTTTTAAA
36125608 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT-CTTCAGC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATGCTT-AGC
** *
36125653 CTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTTGCTTAGT
1 CTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCATGCTTAGC
* * * *
36125698 GTGCTCCACTGCAACTTCAGGGAGATAAGACTAG--ATGC-GA-T
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATGCTTAGC
* * * * **
36125739 CTGCT-CTCTGTAAC-TCTAGAGG-GATAAGA-TCTG--AGGTTTTAAT
1 CTGCTCCACTGCAACTTC-AG-GGAGATAAGACT-TGCCATG-CTTAGC
* * **
36125782 CTGCTCCAATGCAACTTCAGGGAGATATGA-TT---ATCGACTTTAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT-G-C-TTAGC
* * *
36125826 CTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCAT-CTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATGCTT-AGC
* * * * *
36125871 CTGC-CTCACTGCAACTTCA-AGAGGATAAGGCTTG-CTTACTTAGT
1 CTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCATGCTTAGC
36125915 CTGCTCCACTGCAACTTCAGGGAGATAAGACT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACT
36125947 AGATGCGATC
Statistics
Matches: 236, Mismatches: 32, Indels: 53
0.74 0.10 0.17
Matches are distributed among these distances:
39 3 0.01
40 19 0.08
41 7 0.03
42 3 0.01
43 13 0.06
44 86 0.36
45 96 0.41
46 7 0.03
48 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.29
Consensus pattern (45 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATGCTTAGC
Found at i:36125863 original size:218 final size:217
Alignment explanation
Indices: 36125459--36125958 Score: 766
Period size: 218 Copynumber: 2.3 Consensus size: 217
36125449 TGCTTAGGGA
* * **
36125459 GATAAGACCTGCTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATATGATCTG
1 GATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
* * * *
36125524 CTCTCTGTAACTTTCGAGAGATAAGTTCTGAGATTTTAATCCACTCCACTGCAACTTCAAGGAGA
66 CTCTCTGTAACTCTAGAGAGATAAGATCTGAGATTTTAATCCACTCCAATGCAACTTCAAGGAGA
**
36125589 TAGGATTACCGGTTTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGCC
131 TAGGATTACCGACTTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGCC
*
36125654 TGCCTCACTGCAACTTCAGGAG
196 TGCCTCACTGCAACTTCAAGAG
* *
36125676 GATAAGACTTGCTTTGCTTAGTGTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCT
1 GATAAGACTTGC-TTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCT
* * ** *
36125741 GCTCTCTGTAACTCTAGAGGGATAAGATCTGAGGTTTTAATCTGCTCCAATGCAACTTCAGGGAG
65 GCTCTCTGTAACTCTAGAGAGATAAGATCTGAGATTTTAATCCACTCCAATGCAACTTCAAGGAG
* * * * * *
36125806 ATATGATTATCGACTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTCAGT
130 ATAGGATTACCGACTTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGC
36125871 CTGCCTCACTGCAACTTCAAGAG
195 CTGCCTCACTGCAACTTCAAGAG
*
36125894 GATAAGGCTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
1 GATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
36125959 TTATCTTCAC
Statistics
Matches: 255, Mismatches: 27, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
217 62 0.24
218 193 0.76
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (217 bp):
GATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
CTCTCTGTAACTCTAGAGAGATAAGATCTGAGATTTTAATCCACTCCAATGCAACTTCAAGGAGA
TAGGATTACCGACTTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGCC
TGCCTCACTGCAACTTCAAGAG
Found at i:36137486 original size:98 final size:98
Alignment explanation
Indices: 36137312--36137508 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
36137302 GTACAATAAA
* *
36137312 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACCATT
* * * *
36137377 CCTTTAGAATCCTAAACTTGGAATATTTCTTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
36137410 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACCATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACCATT
36137475 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
36137508 A
1 A
36137509 TTATTTTTTA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACCATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:36140417 original size:76 final size:76
Alignment explanation
Indices: 36140161--36140419 Score: 306
Period size: 76 Copynumber: 3.4 Consensus size: 76
36140151 ACAAGATCGG
* * * *
36140161 TTGTGTCCCTAGCACTAGTTGGATAAA-CTGAC-AATGTTTTGTGCCCAGTGCTAGTCGGATAAA
1 TTGTGTGCCTAGCACTAGTCGAATAAATC-GACAAAGGTTTT-TGCCCAGTGCTAGTCGGATAAA
36140224 CCGACGATGATAA
64 CCGACGATGATAA
* ** ** * * **
36140237 TCGTGTGCCTAGCACTAGTCGAATAAATTTACAAAGGTTTGCGCCCAATGCTAGTTGGATAATTC
1 TTGTGTGCCTAGCACTAGTCGAATAAATCGACAAAGGTTTTTGCCCAGTGCTAGTCGGATAAACC
36140302 GACGATGATAA
66 GACGATGATAA
* * * *
36140313 TTATGTGCCTAGCATTAGTCAAATAAATCGACAAAGGTTTTTGCCCAGCGCTAGTCGGATAAACC
1 TTGTGTGCCTAGCACTAGTCGAATAAATCGACAAAGGTTTTTGCCCAGTGCTAGTCGGATAAACC
* *
36140378 GACGATAATAC
66 GACGATGATAA
*
36140389 TTGTGTGCCGAGCACTAGTCGAATAAATCGA
1 TTGTGTGCCTAGCACTAGTCGAATAAATCGA
36140420 TAACACATAC
Statistics
Matches: 149, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
76 143 0.96
77 6 0.04
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (76 bp):
TTGTGTGCCTAGCACTAGTCGAATAAATCGACAAAGGTTTTTGCCCAGTGCTAGTCGGATAAACC
GACGATGATAA
Found at i:36145224 original size:334 final size:334
Alignment explanation
Indices: 36144333--36145418 Score: 1312
Period size: 334 Copynumber: 3.2 Consensus size: 334
36144323 GGTTAAAATT
* * * * *
36144333 CAATTATTGTGCCCATTATTGAATCTAGTTCTGTTTAGGAAAGTG-AAAAAAGTTATGGATCATT
1 CAATTGTTGTTCCCATTATTGATTCTAGTTCTGTTTAGGAAAGTGAAAAAAAGTTATGGGTGATT
* * * * * * *
36144397 CGATGTAGTTAAATCATATCTTTCTCTCTCT-TATGTAATATTTTGTCT-AAAATAATGATTATG
66 CGATGTAGTTAATTCAAATATTTCTTTCTCTATATGTCATAATTTGTCTGAAAA-AACGATTATG
* * * *
36144460 TC-TTCAGATCTAAGAATGTGCCACTCTTTCGATATAGATAGGATCGTAACCTTTACCTTAATTT
130 TCTTTCAGATCTAAGAATGTGCCATTCATTCGATATAGATACGATCGTAACCTTCACCTTAATTT
36144524 TAATTCAATT-GGAGACAGATTCTCTCCC-CATTCTCTAAAGGATGATTTAAAACAAGGAAGATA
195 TAATTCAATTGGGA-ACAGATTCTCTCCCTC-TTCTCTAAAGGATGATTTAAAACAAGGAAGATA
* * * * * * *
36144587 ATCGATGTATGATGTATCTATC-CAAAATTATGATTATATCACTGAGATCTAAAAACATTTCATG
258 ATCAATGTATGATGTAT-T-TCACAAAATTATGATTATATCGCTTAGATCTGAGAACGTCTCATG
36144651 TGTTGGATAGTAGGA
321 TGTTGGA-AGTAGGA
* * * * * * * *
36144666 CAACTGTTGTCCCCACTATTGATTTTGGTTCTATTTTGGAAAGTGAAAAAAAGTTATGGGGGATT
1 CAATTGTTGTTCCCATTATTGATTCTAGTTCTGTTTAGGAAAGTGAAAAAAAGTTATGGGTGATT
* * * *
36144731 CGATGTAGTTAATTCAAATCA-GTCTTTCTTTATATGTCATACTTTGTCTGAAATAACGATTATG
66 CGATGTAGTTAATTCAAAT-ATTTCTTTCTCTATATGTCATAATTTGTCTGAAAAAACGATTATG
* * * * * *
36144795 TCTATCAGATCTAAGAATGTGCCATTCATTCGATATAGATACGACCATATCCTTCACATTAATTA
130 TCTTTCAGATCTAAGAATGTGCCATTCATTCGATATAGATACGATCGTAACCTTCACCTTAATTT
* *
36144860 TAATTCAATTGGGGACAAATTCTCTCCCTCTTCTCTAAAGGATGATTTAAAACAAGGAAGATAAT
195 TAATTCAATTGGGAACAGATTCTCTCCCTCTTCTCTAAAGGATGATTTAAAACAAGGAAGATAAT
* *
36144925 CAATATATGATGTATTTCCACAAAATTATGATTATATCGCTTAGATCTGAGAACGTGTCATGTGT
260 CAATGTATGATGTATTT-CACAAAATTATGATTATATCGCTTAGATCTGAGAACGTCTCATGTGT
36144990 TGGAGAGCTA-GA
324 TGGA-AG-TAGGA
* * *
36145002 CAATTGTTGTTCCTATTATTGATTCTAGTTCT-TTGAGGAAAGTG-AAAAGAGTTATGGGTGATT
1 CAATTGTTGTTCCCATTATTGATTCTAGTTCTGTTTAGGAAAGTGAAAAAAAGTTATGGGTGATT
*
36145065 CGATGTAGTTAATTCAAATATTTCTTTCTCTATATGTCATAATTTGTTTGAAAAAACGATTATGT
66 CGATGTAGTTAATTCAAATATTTCTTTCTCTATATGTCATAATTTGTCTGAAAAAACGATTATGT
* * * * *
36145130 CTTTCAGATCTAAGAACGTGACATTCGTCCGATATAGATACAATCGTAACCTTCACCTTAATTTT
131 CTTTCAGATCTAAGAATGTGCCATTCATTCGATATAGATACGATCGTAACCTTCACCTTAATTTT
* * * * * * * *
36145195 AATTCATTTGGGAATAGATTCTTTCCCTCTTCTTTAAAGGATTACTTAAAAAAAGGAAGGTAATC
196 AATTCAATTGGGAACAGATTCTCTCCCTCTTCTCTAAAGGATGATTTAAAACAAGGAAGATAATC
* * * * * *
36145260 AGTGTATGATGTATTTGTACAAAATTTTGATTATATTGCTTAGATTTGAGAATGTCTCATGTGTT
261 AATGTATGATGTATTT-CACAAAATTATGATTATATCGCTTAGATCTGAGAACGTCTCATGTGTT
*
36145325 GGAAAATAGGA
325 GG-AAGTAGGA
* * * *
36145336 CAATTGATGTTCCCATTATTAATTCTAGTTCTGTTAAGAAAAGTGAAAAAAAGTTATGGGTGATT
1 CAATTGTTGTTCCCATTATTGATTCTAGTTCTGTTTAGGAAAGTGAAAAAAAGTTATGGGTGATT
* *
36145401 CGATATTGTTAATTCAAA
66 CGATGTAGTTAATTCAAA
36145419 GTAGGAATGT
Statistics
Matches: 641, Mismatches: 97, Indels: 27
0.84 0.13 0.04
Matches are distributed among these distances:
333 39 0.06
334 315 0.49
335 49 0.08
336 233 0.36
337 5 0.01
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.37
Consensus pattern (334 bp):
CAATTGTTGTTCCCATTATTGATTCTAGTTCTGTTTAGGAAAGTGAAAAAAAGTTATGGGTGATT
CGATGTAGTTAATTCAAATATTTCTTTCTCTATATGTCATAATTTGTCTGAAAAAACGATTATGT
CTTTCAGATCTAAGAATGTGCCATTCATTCGATATAGATACGATCGTAACCTTCACCTTAATTTT
AATTCAATTGGGAACAGATTCTCTCCCTCTTCTCTAAAGGATGATTTAAAACAAGGAAGATAATC
AATGTATGATGTATTTCACAAAATTATGATTATATCGCTTAGATCTGAGAACGTCTCATGTGTTG
GAAGTAGGA
Found at i:36151702 original size:27 final size:28
Alignment explanation
Indices: 36151629--36151706 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 28
36151619 AGGGGATTGG
* *
36151629 TGATTTTACCGCATTATATGATA-TTGA
1 TGATTTTACTGCATTATATGTTATTTGA
* *
36151656 TGATTTTATTGCATTCTATGTTATTTGA
1 TGATTTTACTGCATTATATGTTATTTGA
36151684 TAGATTTT-CTGCATT-TATGTTAT
1 T-GATTTTACTGCATTATATGTTAT
36151707 ACGATGGCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
27 27 0.61
28 11 0.25
29 6 0.14
ACGTcount: A:0.24, C:0.09, G:0.14, T:0.53
Consensus pattern (28 bp):
TGATTTTACTGCATTATATGTTATTTGA
Found at i:36160594 original size:33 final size:33
Alignment explanation
Indices: 36160538--36160698 Score: 223
Period size: 33 Copynumber: 4.9 Consensus size: 33
36160528 ACATGAGTGG
**
36160538 TTGGAACATCTATTAGGGCAGCTTCATCAATGA
1 TTGGAACATCTATCGGGGCAGCTTCATCAATGA
* * * *
36160571 TTGAAATATCTATCGGGGTAGCTTCATCATTGA
1 TTGGAACATCTATCGGGGCAGCTTCATCAATGA
* *
36160604 TTGGAACATCTATCAGGGCAGCTTCGTCAATGA
1 TTGGAACATCTATCGGGGCAGCTTCATCAATGA
*
36160637 TTGGAACATCTATCGGGGCAGCTTCATCATTGA
1 TTGGAACATCTATCGGGGCAGCTTCATCAATGA
* *
36160670 TTGGAACATCTATTGGGACAGCTTCATCA
1 TTGGAACATCTATCGGGGCAGCTTCATCA
36160699 TTCTGTTAGA
Statistics
Matches: 111, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 111 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (33 bp):
TTGGAACATCTATCGGGGCAGCTTCATCAATGA
Found at i:36160648 original size:66 final size:66
Alignment explanation
Indices: 36160538--36160698 Score: 252
Period size: 66 Copynumber: 2.4 Consensus size: 66
36160528 ACATGAGTGG
* * *
36160538 TTGGAACATCTATTAGGGCAGCTTCATCAATGATTGAAATATCTATCGGGGTAGCTTCATCATTG
1 TTGGAACATCTATCAGGGCAGCTTCATCAATGATTGAAACATCTATCGGGGCAGCTTCATCATTG
36160603 A
66 A
* *
36160604 TTGGAACATCTATCAGGGCAGCTTCGTCAATGATTGGAACATCTATCGGGGCAGCTTCATCATTG
1 TTGGAACATCTATCAGGGCAGCTTCATCAATGATTGAAACATCTATCGGGGCAGCTTCATCATTG
36160669 A
66 A
*
36160670 TTGGAACATCTAT-TGGGACAGCTTCATCA
1 TTGGAACATCTATCAGGG-CAGCTTCATCA
36160699 TTCTGTTAGA
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
65 3 0.03
66 84 0.97
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (66 bp):
TTGGAACATCTATCAGGGCAGCTTCATCAATGATTGAAACATCTATCGGGGCAGCTTCATCATTG
A
Found at i:36166497 original size:16 final size:16
Alignment explanation
Indices: 36166478--36166516 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
36166468 TTATTTCTCT
36166478 TTTTATTGAATTTTTA
1 TTTTATTGAATTTTTA
**
36166494 TTTTATTTTATTTTTA
1 TTTTATTGAATTTTTA
*
36166510 GTTTATT
1 TTTTATT
36166517 ATCATGTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (16 bp):
TTTTATTGAATTTTTA
Found at i:36166642 original size:11 final size:11
Alignment explanation
Indices: 36166605--36166643 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
36166595 TTTCACGAGA
36166605 TTATTTTATTGT
1 TTATTTTA-TGT
*
36166617 TTATTTTATGA
1 TTATTTTATGT
*
36166628 TTATTTTGTGT
1 TTATTTTATGT
36166639 TTATT
1 TTATT
36166644 CTTTATTGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 16 0.67
12 8 0.33
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.72
Consensus pattern (11 bp):
TTATTTTATGT
Found at i:36167125 original size:87 final size:88
Alignment explanation
Indices: 36166995--36167162 Score: 230
Period size: 87 Copynumber: 1.9 Consensus size: 88
36166985 CTTAAATTGA
* ** * * * *
36166995 ATTTATTTTATTTTTAGCCATAGGATTTAGATTTAGGTTTTTAATAGATTTTATTAGATTTTAGT
1 ATTTATTTTATTTTTAGCCATAAGATTTAGATTTAGGGCTTTAAGAGATTTAACTAGATTGTAGT
*
36167060 TTAGAATTTAGGTTATGGATCAG
66 TTAAAATTTAGGTTATGGATCAG
* * *
36167083 ATTTATTTTATTTTTAGCC-TAAGATTTATATTTTGGGCTTTAAGATATTTAACTAGATTGTAGT
1 ATTTATTTTATTTTTAGCCATAAGATTTAGATTTAGGGCTTTAAGAGATTTAACTAGATTGTAGT
36167147 TTAAAATTTAGGTTAT
66 TTAAAATTTAGGTTAT
36167163 TGATTGGATT
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
87 50 0.72
88 19 0.28
ACGTcount: A:0.29, C:0.04, G:0.15, T:0.51
Consensus pattern (88 bp):
ATTTATTTTATTTTTAGCCATAAGATTTAGATTTAGGGCTTTAAGAGATTTAACTAGATTGTAGT
TTAAAATTTAGGTTATGGATCAG
Found at i:36170783 original size:88 final size:86
Alignment explanation
Indices: 36170658--36171017 Score: 335
Period size: 88 Copynumber: 4.1 Consensus size: 86
36170648 ATAAATTTTT
* * * *
36170658 AAATTAAATAAAATGTATTTCAGGATTTTTTCCCGCCGTTCAACAGATTTTATTCTCTATTTTGA
1 AAATTAAATAAAATCTATTTCAAGATTTATTCCCGCCGTTCAACAGATTTTATTC-CAATTTTGA
*
36170723 TTTTTATTTCCAAATGAATTTTA
65 -TTTTATTTCCAAATGAATATTA
* * * ** * *
36170746 AAACTAAACAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATTCCATTTTTTTA
1 AAATTAAATAAAATCTATTTCAAGATTTATTCCCGCCGTTCAACAGATTTTATTCCA-ATTTTGA
*
36170811 TTTTATTTCCAAACGGGAA-ATTA
65 TTTTATTTCCAAA--TGAATATTA
* * * * * *
36170834 AAGTTAAATAAAATCCATTTCAAGATTTATTCCCGTCGTTCAACGGATTTCATACCAATTTTGAT
1 AAATTAAATAAAATCTATTTCAAGATTTATTCCCGCCGTTCAACAGATTTTATTCCAATTTTGAT
**
36170899 TTTATTTCCAAAACAAGTATTA
66 TTTATTTCCAAATGAA-TATTA
* * * * * * ** *
36170921 AAATTAAAATAAAATATGTTTCGATATTTATTCTCGTCGTTCAATGGATTTTATTCTAATTTTGA
1 AAATT-AAATAAAATCTATTTCAAGATTTATTCCCGCCGTTCAACAGATTTTATTCCAATTTTGA
* * *
36170986 TTTAATTTCCAAAAAGGAGTATTA
65 TTTTATTTCC--AAATGAATATTA
36171010 AAATTAAA
1 AAATTAAA
36171018 ATAGATTTAG
Statistics
Matches: 223, Mismatches: 41, Indels: 16
0.80 0.15 0.06
Matches are distributed among these distances:
85 2 0.01
87 40 0.18
88 164 0.74
89 13 0.06
90 4 0.02
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (86 bp):
AAATTAAATAAAATCTATTTCAAGATTTATTCCCGCCGTTCAACAGATTTTATTCCAATTTTGAT
TTTATTTCCAAATGAATATTA
Found at i:36170943 original size:176 final size:174
Alignment explanation
Indices: 36170656--36170998 Score: 411
Period size: 176 Copynumber: 2.0 Consensus size: 174
36170646 AAATAAATTT
** * * * * *
36170656 TTAAATTAAATAAAATGTATTTCAGGATTTTTTCCCGCCGTTCAACAGATTTTATTCTCTATTTT
1 TTAAATTAAATAAAATCCATTTCAAGATTTATTCCCGCCGTTCAACAGATTTCATACTCAATTTT
** * * *
36170721 GATTTTTATTTCCAAATGAATTTTAAAACTAAACAAAATCTGTTTCGGGATTTATTCCCGCCGTT
66 GATTTTTATTTCCAAAACAATATTAAAACTAAACAAAATATGTTTCGAGATTTATTCCCGCCGTT
* * *
36170786 CAACAGATTTTATTCCATTTTTTTATTTTATTTCCAAACGGGAAA
131 CAACAGATTTTATTCCA-ATTTTGATTTAATTTCCAAACGGGAAA
* *
36170831 TTAAAGTTAAATAAAATCCATTTCAAGATTTATTCCCGTCGTTCAACGGATTTCATAC-CAATTT
1 TTAAA-TTAAATAAAATCCATTTCAAGATTTATTCCCGCCGTTCAACAGATTTCATACTCAATTT
* * * * *
36170895 TGA-TTTTATTTCCAAAACAAGTATTAAAATTAAAATAAAATATGTTTCGATATTTATTCTCGTC
65 TGATTTTTATTTCCAAAACAA-TATTAAAACT-AAACAAAATATGTTTCGAGATTTATTCCCGCC
** *
36170959 GTTCAATGGATTTTATTCTAATTTTGATTTAATTTCCAAA
128 GTTCAACAGATTTTATTCCAATTTTGATTTAATTTCCAAA
36170999 AAGGAGTATT
Statistics
Matches: 140, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
174 15 0.11
175 38 0.27
176 87 0.62
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (174 bp):
TTAAATTAAATAAAATCCATTTCAAGATTTATTCCCGCCGTTCAACAGATTTCATACTCAATTTT
GATTTTTATTTCCAAAACAATATTAAAACTAAACAAAATATGTTTCGAGATTTATTCCCGCCGTT
CAACAGATTTTATTCCAATTTTGATTTAATTTCCAAACGGGAAA
Found at i:36173070 original size:33 final size:33
Alignment explanation
Indices: 36173027--36173185 Score: 221
Period size: 33 Copynumber: 4.8 Consensus size: 33
36173017 TCAACATAAG
36173027 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
* * ** *
36173060 TGATTCGAACATTTATTGGGGCAGCTTCATCAT
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
* *
36173093 TGATTGGAACATCTATCAAGGAAGCTTCATCAA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
*
36173126 TGATTGGAACATCTATC-GAGGCAGCTTCATCAT
1 TGATTGGAACATCTATCAG-GGCAGCTTCATCAA
*
36173159 TGATTGGAACATCTATTAGGGCAGCTT
1 TGATTGGAACATCTATCAGGGCAGCTT
36173186 TACCATTCTG
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
33 107 0.99
34 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (33 bp):
TGATTGGAACATCTATCAGGGCAGCTTCATCAA
Found at i:36173109 original size:66 final size:66
Alignment explanation
Indices: 36173027--36173185 Score: 255
Period size: 66 Copynumber: 2.4 Consensus size: 66
36173017 TCAACATAAG
* * *
36173027 TGATTGGAACATCTATCAGGGCAGCTTCATCAATGATTCGAACATTTATTGGGGCAGCTTCATCA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAATGATTCGAACATCTATCGAGGCAGCTTCATCA
36173092 T
66 T
* * *
36173093 TGATTGGAACATCTATCAAGGAAGCTTCATCAATGATTGGAACATCTATCGAGGCAGCTTCATCA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAATGATTCGAACATCTATCGAGGCAGCTTCATCA
36173158 T
66 T
*
36173159 TGATTGGAACATCTATTAGGGCAGCTT
1 TGATTGGAACATCTATCAGGGCAGCTT
36173186 TACCATTCTG
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 84 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (66 bp):
TGATTGGAACATCTATCAGGGCAGCTTCATCAATGATTCGAACATCTATCGAGGCAGCTTCATCA
T
Found at i:36180753 original size:19 final size:19
Alignment explanation
Indices: 36180726--36180764 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
36180716 CCCTGTTTTA
36180726 CCCTCTGCCTCTTCTGTTC
1 CCCTCTGCCTCTTCTGTTC
*
36180745 CCCTTTGCCTCTTCTGTTC
1 CCCTCTGCCTCTTCTGTTC
36180764 C
1 C
36180765 TTCCTTCTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.00, C:0.46, G:0.10, T:0.44
Consensus pattern (19 bp):
CCCTCTGCCTCTTCTGTTC
Found at i:36183927 original size:24 final size:24
Alignment explanation
Indices: 36183900--36183958 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
36183890 NNTTTATTAA
*
36183900 ATTT-ATATATTTTAATTATAATAT
1 ATTTAATATA-TTTAATAATAATAT
36183924 ATTTAATATATTTAATAATAATTAT
1 ATTTAATATATTTAATAATAA-TAT
*
36183949 GTTTAA-ATAT
1 ATTTAATATAT
36183959 GATTAAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 18 0.58
25 13 0.42
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTAATATATTTAATAATAATAT
Found at i:36184125 original size:39 final size:40
Alignment explanation
Indices: 36184082--36184186 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
36184072 TTCCATTATG
36184082 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
36184121 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
36184166 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
36184187 ACACCTCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:36184180 original size:45 final size:44
Alignment explanation
Indices: 36184080--36184189 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
36184070 TTTTCCATTA
36184080 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
36184119 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
36184164 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
36184190 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:36184189 original size:16 final size:16
Alignment explanation
Indices: 36184168--36184205 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
36184158 TTGATTTGCT
*
36184168 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
36184184 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
36184200 AATACA
1 ATTACA
36184206 GTGAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:36195453 original size:41 final size:41
Alignment explanation
Indices: 36195381--36195621 Score: 184
Period size: 41 Copynumber: 5.9 Consensus size: 41
36195371 TAAATTATTT
* * *
36195381 TAAATCCCTGAGCATTAGCGGCGCTTTCTCAAAAACACTGC
1 TAAAGCCCAGAGCATTAGCGGCGCTTCCTCAAAAACACTGC
* * *
36195422 TAAAGCCCAGAGCATTAGCGGCGTTTCCTCAAAAGC-GTCGC
1 TAAAGCCCAGAGCATTAGCGGCGCTTCCTCAAAAACACT-GC
* * * * *
36195463 TAAATCCCTGAGCATTAGCAGCACTTTCC-CAAAAA-AGCGGC
1 TAAAGCCCAGAGCATTAGCGGCGC-TTCCTCAAAAACA-CTGC
* * * * * *
36195504 TAATGCTCAGGGCTTTAGCGGCGCTTCCCCAAAAACGCTGC
1 TAAAGCCCAGAGCATTAGCGGCGCTTCCTCAAAAACACTGC
** * * * *
36195545 TAAAGCCTTGAGCATTAGCAGCACTTCCCCAAAAAACACCGC
1 TAAAGCCCAGAGCATTAGCGGCGCTTCCTC-AAAAACACTGC
* *
36195587 TAAAGCCTTA-AGCATTAGTGGCGCTTCCTCAAAAA
1 TAAAGCC-CAGAGCATTAGCGGCGCTTCCTCAAAAA
36195622 TGCCGCTAAA
Statistics
Matches: 153, Mismatches: 39, Indels: 16
0.74 0.19 0.08
Matches are distributed among these distances:
40 5 0.03
41 111 0.73
42 36 0.24
43 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.21
Consensus pattern (41 bp):
TAAAGCCCAGAGCATTAGCGGCGCTTCCTCAAAAACACTGC
Found at i:36195522 original size:82 final size:81
Alignment explanation
Indices: 36195381--36195635 Score: 262
Period size: 82 Copynumber: 3.1 Consensus size: 81
36195371 TAAATTATTT
* * * * *
36195381 TAAATCCCTGAGCATTAGCGGCGCTTTCTCAAAAACACTGCTAAAGCCCAGAGCATTAGCGGCGT
1 TAAATCCCTGAGCATTAGCAGCACTTTCCCAAAAA-ACGGCTAAAGCCCAGAGCATTAGCGGCGC
* *
36195446 TTCCTCAAAAGCG-TCGC
65 TTCCCCAAAAACGCT-GC
* * * *
36195463 TAAATCCCTGAGCATTAGCAGCACTTTCCCAAAAAAGCGGCTAATGCTCAGGGCTTTAGCGGCGC
1 TAAATCCCTGAGCATTAGCAGCACTTTCCCAAAAAA-CGGCTAAAGCCCAGAGCATTAGCGGCGC
36195528 TTCCCCAAAAACGCTGC
65 TTCCCCAAAAACGCTGC
* * * * * *
36195545 TAAAGCCTTGAGCATTAGCAGCACTTCCCCAAAAAACACCGCTAAAGCCTTA-AGCATTAGTGGC
1 TAAATCCCTGAGCATTAGCAGCACTTTCCC-AAAAA-ACGGCTAAAGCC-CAGAGCATTAGCGGC
* * *
36195609 GCTTCCTCAAAAATGCCGC
63 GCTTCCCCAAAAACGCTGC
36195628 TAAATCCC
1 TAAATCCC
36195636 CGAAAGCTCA
Statistics
Matches: 142, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
81 1 0.01
82 94 0.66
83 45 0.32
84 2 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (81 bp):
TAAATCCCTGAGCATTAGCAGCACTTTCCCAAAAAACGGCTAAAGCCCAGAGCATTAGCGGCGCT
TCCCCAAAAACGCTGC
Found at i:36195621 original size:123 final size:124
Alignment explanation
Indices: 36195395--36195630 Score: 262
Period size: 123 Copynumber: 1.9 Consensus size: 124
36195385 TCCCTGAGCA
* * * ** * * **
36195395 TTAGCGGCGCTTTCTCAAAAACACTGCTAAAGCCCAGAGCATTAGCGGCGTTTCCTCAAAAGCGT
1 TTAGCGGCGCTTCCCCAAAAACACTGCTAAAGCCCAGAGCATTAGCAGCACTTCCCCAAAAACAC
* * *
36195460 CGCTAAATCCCTGAGCATTAGCAGCACTTTCCCAAAAAA-GCGGCTAATGCTCAGGGCT
66 CGCTAAAGCCCTAAGCATTAGCAGCACTTTCCCAAAAAATGCCGCTAATGCTCAGGGCT
* **
36195518 TTAGCGGCGCTTCCCCAAAAACGCTGCTAAAGCCTTGAGCATTAGCAGCACTTCCCCAAAAAACA
1 TTAGCGGCGCTTCCCCAAAAACACTGCTAAAGCCCAGAGCATTAGCAGCACTTCCCC-AAAAACA
* ** *
36195583 CCGCTAAAGCCTTAAGCATTAGTGGCGC-TTCCTC-AAAAATGCCGCTAA
65 CCGCTAAAGCCCTAAGCATTAGCAGCACTTTCC-CAAAAAATGCCGCTAA
36195631 ATCCCCGAAA
Statistics
Matches: 91, Mismatches: 19, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
123 57 0.63
124 34 0.37
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (124 bp):
TTAGCGGCGCTTCCCCAAAAACACTGCTAAAGCCCAGAGCATTAGCAGCACTTCCCCAAAAACAC
CGCTAAAGCCCTAAGCATTAGCAGCACTTTCCCAAAAAATGCCGCTAATGCTCAGGGCT
Found at i:36198103 original size:13 final size:14
Alignment explanation
Indices: 36198085--36198119 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
36198075 TTTGGTTCAG
*
36198085 TTAGATTT-CATAT
1 TTAGATTTCCAAAT
36198098 TTAGATTTCCAAAT
1 TTAGATTTCCAAAT
36198112 TTAGATTT
1 TTAGATTT
36198120 TCCTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (14 bp):
TTAGATTTCCAAAT
Found at i:36204672 original size:16 final size:16
Alignment explanation
Indices: 36204651--36204693 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
36204641 ACTGTGAAAA
*
36204651 AAAACTATAGACTGAG
1 AAAACTATAGAATGAG
* *
36204667 AAAACTGTAGAATGTG
1 AAAACTATAGAATGAG
*
36204683 AAAACTCTAGA
1 AAAACTATAGA
36204694 TAATGAAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.21
Consensus pattern (16 bp):
AAAACTATAGAATGAG
Found at i:36206481 original size:27 final size:27
Alignment explanation
Indices: 36206443--36206650 Score: 245
Period size: 27 Copynumber: 7.7 Consensus size: 27
36206433 CGATTCATGC
*
36206443 TAAAATGACCGAAATACCCTCAAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
36206470 TAAAATGACCGAAATACCCTCAAAGGT
1 TAAAATGACCGAAATACCCTCGAAGGG
* * * *
36206497 TAAATTGATCGAAATACCCCCGAAGGA
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
36206524 TAAAATGACTGAAATACCCTTGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
36206551 TAAAATGACTGAAATACCCTCAAAGGT
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
36206578 TAAATTGATCGAAATACCCCCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
** * *
36206605 TAAAATGATTGAAATACCCCCGCAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
36206632 TAAAATGACCGAAATACCC
1 TAAAATGACCGAAATACCC
36206651 AAAATACCCT
Statistics
Matches: 155, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCGAAGGG
Found at i:36206515 original size:54 final size:54
Alignment explanation
Indices: 36206443--36207052 Score: 627
Period size: 54 Copynumber: 11.1 Consensus size: 54
36206433 CGATTCATGC
* * * *
36206443 TAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCAAAGGT
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGG
* * * * *
36206497 TAAATTGATCGAAATACCCCCGAAGGATAAAATGACTGAAATACCCTTGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGG
* * * * *
36206551 TAAAATGA-CTGAAATACCCTCAAAGGTTAAATTGATCGAAATACCCCCGAAGGG
1 TAAAATGATC-GAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGG
* * * *
36206605 TAAAATGATTGAAATACCCCCGCAGGGTAAAATGACCGAAATACCCAAAATACCCTGGAAAGTG
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCC----T---C--G-AAGGG
* * * * *
36206669 TAAAATGA-CTGAAATACTCGCGAATGGTAAAATGACCAAAATACCCTCAAAGGG
1 TAAAATGATC-GAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGG
* ** *
36206723 TAAAATGATCGAAATATCCTCGAAGGGTAAAATGACTAAAATATCCTCGAA-GG
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGG
* * * * *
36206776 TAAAATGATCGAAGTACCCTTGAAGGGTAAAACGAGCGAAATACCCTTGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGG
* ***
36206830 TAAAATGA-CTAAAATACCCTCGAAGGGTAAAATGATTAAAATACCCTCGAAGGG
1 TAAAATGATC-GAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGG
* * * * *
36206884 TAAAATGATTGAAATACCCCCGAAGGGTAAAATGATCGAAATACCCTCAAAAGG
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGG
* * * * *
36206938 TAAAATGATCGAAATATCCTCAAAGGGTAAAATGATCGAAATACCCCCAAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGG
* * *
36206992 TAAAATGATCGAAATACCC-CAAAAGGTAAAATGACCAAAATACCCTCGAAGGG
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGG
36207045 TAAAATGA
1 TAAAATGA
36207053 CTGATATACC
Statistics
Matches: 461, Mismatches: 78, Indels: 35
0.80 0.14 0.06
Matches are distributed among these distances:
53 83 0.18
54 330 0.72
55 1 0.00
57 1 0.00
60 1 0.00
61 1 0.00
63 1 0.00
64 43 0.09
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (54 bp):
TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGG
Found at i:36206578 original size:81 final size:80
Alignment explanation
Indices: 36206443--36207063 Score: 574
Period size: 81 Copynumber: 7.6 Consensus size: 80
36206433 CGATTCATGC
* * * * *
36206443 TAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCAAAGGTTAAATTGATCG
1 TAAAATGACTGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCAAAGGGTAAAATGATCG
36206508 AAATACCCCCGAAGG
66 AAATACCCCCGAAGG
* * *
36206523 ATAAAATGACTGAAATACCCTTGAAGGGTAAAATGACTGAAATACCCTCAAAGGTTAAATTGATC
1 -TAAAATGACTGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCAAAGGGTAAAATGATC
36206588 GAAATACCCCCGAAGGG
65 GAAATACCCCCGAA-GG
* * * * *
36206605 TAAAATGATTGAAATACCCCCGCAGGGTAAAATGACCGAAATACCCAAAATACCCTGGAAAGTGT
1 TAAAATGACTGAAATACCCTCGAAGGGTAAAATGACTGAAATACCC----T---C---AAAGGGT
* *
36206670 AAAATGA-CTGAAATACTCGCGAATGG
56 AAAATGATC-GAAATACCCCCGAA-GG
** * * *
36206696 TAAAATGACCAAAATACCCTCAAAGGGTAAAATGA-TCGAAATATCCTCGAAGGGTAAAATGA-C
1 TAAAATGACTGAAATACCCTCGAAGGGTAAAATGACT-GAAATACCCTCAAAGGGTAAAATGATC
* * *
36206759 TAAAATATCCTCGAAGG
65 -GAAATACCCCCGAAGG
* * * **
36206776 TAAAATGA-TCGAAGTACCCTTGAAGGGTAAAACGAGC-GAAATACCCTTGAAGGGTAAAATGA-
1 TAAAATGACT-GAAATACCCTCGAAGGGTAAAATGA-CTGAAATACCCTCAAAGGGTAAAATGAT
* *
36206838 CTAAAATACCCTCGAAGGG
64 C-GAAATACCCCCGAA-GG
* * * * *
36206857 TAAAATGATTAAAATACCCTCGAAGGGTAAAATGATTGAAATACCCCCGAAGGGTAAAATGATCG
1 TAAAATGACTGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCAAAGGGTAAAATGATCG
**
36206922 AAATACCCTCAAAAGG
66 AAATACCC-CCGAAGG
* * *
36206938 TAAAATGA-TCGAAATATCCTCAAAGGGTAAAATGA-TCGAAATACCCCCAAAGGGTAAAATGAT
1 TAAAATGACT-GAAATACCCTCGAAGGGTAAAATGACT-GAAATACCCTCAAAGGGTAAAATGAT
**
36207001 CGAAATACCCCAAAAGG
64 CGAAATACCCCCGAAGG
** *
36207018 TAAAATGACCAAAATACCCTCGAAGGGTAAAATGACTGATATACCC
1 TAAAATGACTGAAATACCCTCGAAGGGTAAAATGACTGAAATACCC
36207064 CTAGGAATTA
Statistics
Matches: 457, Mismatches: 58, Indels: 51
0.81 0.10 0.09
Matches are distributed among these distances:
80 115 0.25
81 269 0.59
82 6 0.01
84 1 0.00
85 1 0.00
87 1 0.00
88 1 0.00
90 1 0.00
91 62 0.14
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
TAAAATGACTGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTCAAAGGGTAAAATGATCG
AAATACCCCCGAAGG
Found at i:36206702 original size:27 final size:27
Alignment explanation
Indices: 36206652--36207063 Score: 410
Period size: 27 Copynumber: 15.3 Consensus size: 27
36206642 GAAATACCCA
* *
36206652 AAATACCCTGGAAAGTGTAAAATGACTG
1 AAATACCCTCG-AAGGGTAAAATGACTG
* * * **
36206680 AAATACTCGCGAATGGTAAAATGACCA
1 AAATACCCTCGAAGGGTAAAATGACTG
*
36206707 AAATACCCTCAAAGGGTAAAATGA-TCG
1 AAATACCCTCGAAGGGTAAAATGACT-G
* *
36206734 AAATATCCTCGAAGGGTAAAATGACTA
1 AAATACCCTCGAAGGGTAAAATGACTG
*
36206761 AAATATCCTCGAA-GGTAAAATGA-TCG
1 AAATACCCTCGAAGGGTAAAATGACT-G
* * *
36206787 AAGTACCCTTGAAGGGTAAAACGAGC-G
1 AAATACCCTCGAAGGGTAAAATGA-CTG
* *
36206814 AAATACCCTTGAAGGGTAAAATGACTA
1 AAATACCCTCGAAGGGTAAAATGACTG
* *
36206841 AAATACCCTCGAAGGGTAAAATGATTA
1 AAATACCCTCGAAGGGTAAAATGACTG
*
36206868 AAATACCCTCGAAGGGTAAAATGATTG
1 AAATACCCTCGAAGGGTAAAATGACTG
*
36206895 AAATACCCCCGAAGGGTAAAATGA-TCG
1 AAATACCCTCGAAGGGTAAAATGACT-G
* *
36206922 AAATACCCTCAAAAGGTAAAATGA-TCG
1 AAATACCCTCGAAGGGTAAAATGACT-G
* *
36206949 AAATATCCTCAAAGGGTAAAATGA-TCG
1 AAATACCCTCGAAGGGTAAAATGACT-G
* *
36206976 AAATACCCCCAAAGGGTAAAATGA-TCG
1 AAATACCCTCGAAGGGTAAAATGACT-G
* * **
36207003 AAATACCC-CAAAAGGTAAAATGACCA
1 AAATACCCTCGAAGGGTAAAATGACTG
36207029 AAATACCCTCGAAGGGTAAAATGACTG
1 AAATACCCTCGAAGGGTAAAATGACTG
*
36207056 ATATACCC
1 AAATACCC
36207064 CTAGGAATTA
Statistics
Matches: 331, Mismatches: 43, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
25 1 0.00
26 44 0.13
27 277 0.84
28 9 0.03
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (27 bp):
AAATACCCTCGAAGGGTAAAATGACTG
Found at i:36207436 original size:28 final size:30
Alignment explanation
Indices: 36207395--36207479 Score: 120
Period size: 30 Copynumber: 2.9 Consensus size: 30
36207385 CATTGTACTG
*
36207395 ATTACTATATTGGGCTAAGGCCCACA-A-T
1 ATTACTGTATTGGGCTAAGGCCCACACACT
* *
36207423 GTTACTGTATTGGGCTAAGACCCACACACT
1 ATTACTGTATTGGGCTAAGGCCCACACACT
*
36207453 ATTACTGTAATGGGCTAAGGCCCACAC
1 ATTACTGTATTGGGCTAAGGCCCACAC
36207480 TGCACTGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
28 23 0.47
29 1 0.02
30 25 0.51
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (30 bp):
ATTACTGTATTGGGCTAAGGCCCACACACT
Found at i:36208301 original size:17 final size:17
Alignment explanation
Indices: 36208281--36208316 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
36208271 CTTAAATTAG
*
36208281 GGAAAACTAAGACTGTA
1 GGAAAACTAAAACTGTA
36208298 GGAAAACTAAAACTGTA
1 GGAAAACTAAAACTGTA
36208315 GG
1 GG
36208317 TAGACTCCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.47, C:0.11, G:0.25, T:0.17
Consensus pattern (17 bp):
GGAAAACTAAAACTGTA
Found at i:36214030 original size:27 final size:26
Alignment explanation
Indices: 36213992--36214617 Score: 610
Period size: 27 Copynumber: 23.3 Consensus size: 26
36213982 TACAATTCGT
36213992 GGTAAAATGACCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCTCA-AG
*
36214019 GGTAAAATGACCGAAATACCCCCGAAG
1 GGTAAAATGACCGAAATACCCTC-AAG
* * *
36214046 GTTAAAATTACCGATATACCCTCGAAG
1 GGTAAAATGACCGAAATACCCTC-AAG
* *
36214073 GGTAAAATGACCGAAATATCCTTGAAG
1 GGTAAAATGACCGAAATA-CCCTCAAG
* *
36214100 GGTAAAATGACCGATATACCCTTGAAG
1 GGTAAAATGACCGAAATACCC-TCAAG
*
36214127 GGTAAAATGACTAGAAATACCCTCAAAG
1 GGTAAAATGAC-CGAAATACCCTC-AAG
**
36214155 GG-AAAATGACTAAAATACCCTCAACG
1 GGTAAAATGACCGAAATACCCTCAA-G
** *
36214181 GGTAAAATGATTGAAATACCCCCGAAG
1 GGTAAAATGACCGAAATACCCTC-AAG
* * *
36214208 GTTAAAATTACCGATATACCCTCGAAG
1 GGTAAAATGACCGAAATACCCTC-AAG
* *
36214235 GGTAAAATGACCGAAATATCCTTGAAG
1 GGTAAAATGACCGAAATA-CCCTCAAG
* *
36214262 GGTAAAATGACCGATATACCCTTGAAG
1 GGTAAAATGACCGAAATACCC-TCAAG
** * *
36214289 GGTAAAATGACTAAAATACCCCTGAAA
1 GGTAAAATGACCGAAATA-CCCTCAAG
*
36214316 GGTAAAATGATCGAAATACCCTCAAAG
1 GGTAAAATGACCGAAATACCCTC-AAG
**
36214343 GG-AAAATGACTAAAATACCCTCAACG
1 GGTAAAATGACCGAAATACCCTCAA-G
**
36214369 GGTAAAATGATTGAAATACCCTCGAAG
1 GGTAAAATGACCGAAATACCCTC-AAG
* ** * *
36214396 GATAAAATGATTGAAATACCTTCGAAA
1 GGTAAAATGACCGAAATACCCTC-AAG
** * *
36214423 GGTAAAATGATTGAAATACCCCCGAAT
1 GGTAAAATGACCGAAATACCCTC-AAG
36214450 GGTAAAATGACCGAAATACCCTCAAAG
1 GGTAAAATGACCGAAATACCCTC-AAG
*
36214477 GGTAAAATGACTGAAATACCCTCGAAG
1 GGTAAAATGACCGAAATACCCTC-AAG
*
36214504 GGTAAAATGACCGAAATATCCTCGAAG
1 GGTAAAATGACCGAAATACCCTC-AAG
* ** *
36214531 AGTAAAATGATAGAAATACCC-AAAG
1 GGTAAAATGACCGAAATACCCTCAAG
*
36214556 GGTAAAATGACCTAAATACCCTCGAAG
1 GGTAAAATGACCGAAATACCCTC-AAG
36214583 GGTAAAATGACCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCTCA-AG
36214610 GGTAAAAT
1 GGTAAAAT
36214618 TACTAATATA
Statistics
Matches: 507, Mismatches: 74, Indels: 36
0.82 0.12 0.06
Matches are distributed among these distances:
25 24 0.05
26 42 0.08
27 414 0.82
28 27 0.05
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20
Consensus pattern (26 bp):
GGTAAAATGACCGAAATACCCTCAAG
Found at i:36214829 original size:26 final size:26
Alignment explanation
Indices: 36214795--36214869 Score: 69
Period size: 26 Copynumber: 2.9 Consensus size: 26
36214785 TTGCCACAAA
* *
36214795 TACTATTACTGGCAGCTCTGCTGCGT
1 TACTATTACTAGAAGCTCTGCTGCGT
* *
36214821 TACTGTTACTAGAAGCTTTGCTGCGT
1 TACTATTACTAGAAGCTCTGCTGCGT
* * * * *
36214847 CACTAGTACCAGTAGCTTTGCTG
1 TACTATTACTAGAAGCTCTGCTG
36214870 TGATATTGGT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
TACTATTACTAGAAGCTCTGCTGCGT
Found at i:36215012 original size:28 final size:28
Alignment explanation
Indices: 36214975--36215065 Score: 110
Period size: 28 Copynumber: 3.1 Consensus size: 28
36214965 ATTGCATTAT
* * *
36214975 ACTGATTACTATATTAGGCTAAGGCCCTC
1 ACTG-TTACTGTATTGGGCTAAGGCCCAC
*
36215004 ACTGTTACTGTATTGGGCTAAGACCCACAC
1 ACTGTTACTGTATTGGGCTAAG-GCC-CAC
*
36215034 ACTGTTACTGTAATGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
36215062 ACTG
1 ACTG
36215066 CACTGATACT
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
28 23 0.43
29 8 0.15
30 23 0.43
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:36215039 original size:30 final size:30
Alignment explanation
Indices: 36215003--36215063 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
36214993 CTAAGGCCCT
*
36215003 CACTGTTACTGTATTGGGCTAAGACCCACA
1 CACTGTTACTGTAATGGGCTAAGACCCACA
*
36215033 CACTGTTACTGTAATGGGCTAAGGCCCACA
1 CACTGTTACTGTAATGGGCTAAGACCCACA
36215063 C
1 C
36215064 TGCACTGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (30 bp):
CACTGTTACTGTAATGGGCTAAGACCCACA
Found at i:36216192 original size:28 final size:29
Alignment explanation
Indices: 36216135--36216192 Score: 66
Period size: 28 Copynumber: 2.0 Consensus size: 29
36216125 TTTAAATAAA
* *
36216135 TATGGACTTTTATTTATGATTTGGATTTT
1 TATGGACTTTTATTGATGATTTGGACTTT
*
36216164 TATGGAC-TTTATTGCTG-TTTGAGACTTT
1 TATGGACTTTTATTGATGATTTG-GACTTT
36216192 T
1 T
36216193 TATTTTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 4 0.16
28 14 0.56
29 7 0.28
ACGTcount: A:0.19, C:0.07, G:0.19, T:0.55
Consensus pattern (29 bp):
TATGGACTTTTATTGATGATTTGGACTTT
Found at i:36216192 original size:29 final size:29
Alignment explanation
Indices: 36216135--36216195 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
36216125 TTTAAATAAA
*
36216135 TATGGACTTTTATTTATGATTTGGATTTT
1 TATGGACTTTTATTGATGATTTGGATTTT
*
36216164 TATGGAC-TTTATTGCTG-TTTGAGACTTTT
1 TATGGACTTTTATTGATGATTTG-GA-TTTT
36216193 TAT
1 TAT
36216196 TTTAAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 4 0.14
28 10 0.36
29 14 0.50
ACGTcount: A:0.20, C:0.07, G:0.18, T:0.56
Consensus pattern (29 bp):
TATGGACTTTTATTGATGATTTGGATTTT
Found at i:36218402 original size:21 final size:22
Alignment explanation
Indices: 36218371--36218411 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
36218361 ATTGCACAAA
36218371 CAAAACATTAAAACATACATTT
1 CAAAACATTAAAACATACATTT
* *
36218393 CAAAA-ATTAATATATACAT
1 CAAAACATTAAAACATACAT
36218412 AACATAAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (22 bp):
CAAAACATTAAAACATACATTT
Found at i:36231631 original size:16 final size:15
Alignment explanation
Indices: 36231612--36231653 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
36231602 AAAGCTGATA
36231612 ATAATTAATATATATT
1 ATAATTAATATA-ATT
*
36231628 ATAATGAATATAATT
1 ATAATTAATATAATT
36231643 ATATATTAATA
1 ATA-ATTAATA
36231654 ATGATCATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (15 bp):
ATAATTAATATAATT
Found at i:36231772 original size:30 final size:30
Alignment explanation
Indices: 36231715--36231776 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
36231705 GCTTTTTGAA
* *
36231715 AATATATACAAAAAGAGGCATCTAATTTTT
1 AATATATACAAAAAGAGGCACCAAATTTTT
*
36231745 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATATACAAAAAGAGGC-ACCAAATTTTT
36231775 AA
1 AA
36231777 AAATAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.50, C:0.11, G:0.08, T:0.31
Consensus pattern (30 bp):
AATATATACAAAAAGAGGCACCAAATTTTT
Found at i:36238130 original size:27 final size:26
Alignment explanation
Indices: 36238099--36238160 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
36238089 AAAGGTTTTT
** *
36238099 AAATGACTGAAATACCCTTGAAGGGTA
1 AAATGACCAAAATACCCCT-AAGGGTA
*
36238126 AAATGACCAAAATACCCCTAGGGGTA
1 AAATGACCAAAATACCCCTAAGGGTA
*
36238152 AAATTACCA
1 AAATGACCA
36238161 TTTTACCCCT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.19
Consensus pattern (26 bp):
AAATGACCAAAATACCCCTAAGGGTA
Found at i:36238388 original size:22 final size:21
Alignment explanation
Indices: 36238326--36238392 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
36238316 GGAGGAAGTG
*
36238326 TATGGCTTGTAGCCATTCTGT
1 TATGGCTTTTAGCCATTCTGT
* *
36238347 TCAAGGCTTATT-GCCTTTCTGCT
1 T-ATGGCTT-TTAGCCATTCTG-T
36238370 TATGGCTTTTAGCCATTCTGT
1 TATGGCTTTTAGCCATTCTGT
36238391 TA
1 TA
36238393 ACTGGCAGCG
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
21 6 0.16
22 28 0.76
23 3 0.08
ACGTcount: A:0.15, C:0.21, G:0.19, T:0.45
Consensus pattern (21 bp):
TATGGCTTTTAGCCATTCTGT
Found at i:36238426 original size:46 final size:46
Alignment explanation
Indices: 36238368--36238482 Score: 167
Period size: 46 Copynumber: 2.5 Consensus size: 46
36238358 TGCCTTTCTG
* * * *
36238368 CTTATGGCTTTTAGCCATTCTGTTAACTGGCAGCGTTGCTGCGATA
1 CTTATGGCTTTTAGCCGTTCTGTTAACTGGCAGCATCGCTGCAATA
*
36238414 CTTATGGCTTTTAGCCGTTCTATTAACTGGCAGCATCGCTGCAATA
1 CTTATGGCTTTTAGCCGTTCTGTTAACTGGCAGCATCGCTGCAATA
* *
36238460 CTTATGGTTTTTAGTCGTTCTGT
1 CTTATGGCTTTTAGCCGTTCTGT
36238483 CTACGGTATC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 61 1.00
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (46 bp):
CTTATGGCTTTTAGCCGTTCTGTTAACTGGCAGCATCGCTGCAATA
Found at i:36241339 original size:20 final size:19
Alignment explanation
Indices: 36241316--36241362 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
36241306 AAACGAAAAG
36241316 AAATTAACCTAACATGAATT
1 AAATTAACCTAA-ATGAATT
* *
36241336 AAATTCAAGCTAAATTAATT
1 AAATT-AACCTAAATGAATT
36241356 AAATTAA
1 AAATTAA
36241363 TCATTGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 16 0.67
21 6 0.25
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.32
Consensus pattern (19 bp):
AAATTAACCTAAATGAATT
Found at i:36260912 original size:28 final size:28
Alignment explanation
Indices: 36260876--36260937 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
36260866 CAGTAGAAGT
36260876 ACAGTGTGGGCCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
*
36260904 ACAGTGTGGGCCTTAGCCTAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
36260932 ATCAGT
1 A-CAGT
36260938 ACAATGCAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 28 0.88
29 4 0.12
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAGTA
Found at i:36261117 original size:26 final size:25
Alignment explanation
Indices: 36261043--36261119 Score: 91
Period size: 26 Copynumber: 3.0 Consensus size: 25
36261033 ACGCCAATAT
* *
36261043 TGCAGCAAAGCTGGCAGTAATAATGA
1 TGCAGCAAAGCT-GCAGTAATAGTAA
* *
36261069 CGCAGCAAAGCTTCCAGTAATAGTAA
1 TGCAGCAAAGC-TGCAGTAATAGTAA
36261095 TGCAGCAAAGCTGCTAGTAATAGTA
1 TGCAGCAAAGCTGC-AGTAATAGTA
36261120 TATGTTGCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
25 2 0.05
26 40 0.93
27 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (25 bp):
TGCAGCAAAGCTGCAGTAATAGTAA
Found at i:36261734 original size:27 final size:27
Alignment explanation
Indices: 36261311--36261733 Score: 499
Period size: 27 Copynumber: 15.7 Consensus size: 27
36261301 TACCTTATGG
* *
36261311 GGGTATTTCGGTCATTTTACCCTTTGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
** *
36261338 GGGTATTTCAATCATTTTACCCTACGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
36261365 GGTTATTTCAGTCATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
** *
36261392 GGGTATTTCAATCATTTTACCCTTCGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
36261419 GGGTACTTCAGTCATTTTACCCTTTGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
*
36261446 GGGTATTTCGGTTATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
*
36261473 GGGTATTTCAGTCATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * * * *
36261500 GGGTATTTC-ATCTTTTTACCATTTGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
*
36261526 GGGTATTTCGGTCATTTTACCCTTTGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
*
36261553 GGGTATTTCGATCATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
*
36261580 GGGTATTTCGATCATTTTACCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * * *
36261606 GGGGTATTTTGGTTATTTTACCCTACGG
1 -GGGTATTTCGGTCATTTTACCCTTCGA
* *
36261634 GGGTATTTTGGTCATTTTGCCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
** * * *
36261661 GGGTATTTTTGTTATTTTACCCTTTGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
36261688 GGGTATTTCGATCATTTTAGCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
36261715 GGGTATTTCGGTCATTTTA
1 GGGTATTTCGGTCATTTTA
36261734 GGCCCATTAC
Statistics
Matches: 339, Mismatches: 54, Indels: 6
0.85 0.14 0.02
Matches are distributed among these distances:
26 22 0.06
27 317 0.94
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.44
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACCCTTCGA
Found at i:36265816 original size:21 final size:22
Alignment explanation
Indices: 36265787--36265837 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
36265777 TCTCTCTCGC
*
36265787 TTTCCTTTTCGCCTTTTTCA-T
1 TTTCATTTTCGCCTTTTTCACT
**
36265808 TTTCATTTTCTTCTTTTTCACT
1 TTTCATTTTCGCCTTTTTCACT
36265830 TTT-ATTTT
1 TTTCATTTT
36265838 TCTCTTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.08, C:0.22, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTCATTTTCGCCTTTTTCACT
Found at i:36265843 original size:21 final size:21
Alignment explanation
Indices: 36265799--36265856 Score: 64
Period size: 24 Copynumber: 2.6 Consensus size: 21
36265789 TCCTTTTCGC
36265799 CTTTTTCATTTTCATTTTCTT
1 CTTTTTCATTTTCATTTTCTT
36265820 CTTTTTCACTTTT-ATTTTTCTCTT
1 CTTTTTCA-TTTTCA--TTT-TCTT
*
36265844 CTTTTTCTTTTTC
1 CTTTTTCATTTTC
36265857 CTCACTTGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 9 0.29
22 4 0.13
23 7 0.23
24 11 0.35
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (21 bp):
CTTTTTCATTTTCATTTTCTT
Found at i:36274016 original size:7 final size:7
Alignment explanation
Indices: 36274004--36274037 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
36273994 ATTTTCTTAG
36274004 TTTTATT
1 TTTTATT
36274011 TTTTATT
1 TTTTATT
36274018 TTTTATT
1 TTTTATT
*
36274025 TTTATCTT
1 TTT-TATT
36274033 TTTTA
1 TTTTA
36274038 AATTTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTATT
Found at i:36274985 original size:41 final size:41
Alignment explanation
Indices: 36274927--36275032 Score: 151
Period size: 41 Copynumber: 2.6 Consensus size: 41
36274917 ATTAACCTTG
36274927 AATTGCACATACGTGCCCCTGTTTGTACTTGGGTACCCCTA
1 AATTGCACATACGTGCCCCTGTTTGTACTTGGGTACCCCTA
* * *
36274968 TATTGCACATATGTGCCCC-GATTTGTACTTTGGTACCCCTA
1 AATTGCACATACGTGCCCCTG-TTTGTACTTGGGTACCCCTA
* *
36275009 AATTACACATGCGTGCCCCTGTTT
1 AATTGCACATACGTGCCCCTGTTT
36275033 ACACACCGAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
40 1 0.02
41 54 0.96
42 1 0.02
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTGTTTGTACTTGGGTACCCCTA
Found at i:36275243 original size:37 final size:37
Alignment explanation
Indices: 36275202--36275276 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
36275192 ATTTTATCAA
36275202 GATTGTAAATAGGTATCTTTTTGGTATACTTAGAATG
1 GATTGTAAATAGGTATCTTTTTGGTATACTTAGAATG
36275239 GATTGTAAATAGGTATCTTTTTGGTATACTTAGAATG
1 GATTGTAAATAGGTATCTTTTTGGTATACTTAGAATG
36275276 G
1 G
36275277 TATGAAAGTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.05, G:0.23, T:0.43
Consensus pattern (37 bp):
GATTGTAAATAGGTATCTTTTTGGTATACTTAGAATG
Found at i:36284898 original size:41 final size:41
Alignment explanation
Indices: 36284812--36284921 Score: 152
Period size: 41 Copynumber: 2.7 Consensus size: 41
36284802 AGTTAATTAA
*
36284812 CCCTGAATTGCACATA-GATG-CCCTGTTTCTACTTCAATAC
1 CCCTGAATTGCACATACG-TGCCCCTATTTCTACTTCAATAC
* ***
36284852 CCCTGAATTGCACATACGTGCCCCTATTTGTACTTTGGTAC
1 CCCTGAATTGCACATACGTGCCCCTATTTCTACTTCAATAC
36284893 CCCTGAATTGCACATACGTGCCCCTATTT
1 CCCTGAATTGCACATACGTGCCCCTATTT
36284922 ACACTCTTGT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
40 18 0.29
41 45 0.71
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.33
Consensus pattern (41 bp):
CCCTGAATTGCACATACGTGCCCCTATTTCTACTTCAATAC
Found at i:36284941 original size:41 final size:41
Alignment explanation
Indices: 36284853--36284943 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 41
36284843 CTTCAATACC
** **
36284853 CCTGAATTGCACATACGTGCCCCTATTTGTACTTTGGTACC
1 CCTGAATTGCACATACGTGCCCCTATTTACACTTTGGTAAA
36284894 CCTGAATTGCACATACGTGCCCCTATTTACACTCTT-GTAAA
1 CCTGAATTGCACATACGTGCCCCTATTTACACT-TTGGTAAA
**
36284935 TTTGAATTG
1 CCTGAATTG
36284944 AGTAATATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 41 0.95
42 2 0.05
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.35
Consensus pattern (41 bp):
CCTGAATTGCACATACGTGCCCCTATTTACACTTTGGTAAA
Found at i:36287293 original size:106 final size:106
Alignment explanation
Indices: 36287097--36287309 Score: 284
Period size: 106 Copynumber: 2.0 Consensus size: 106
36287087 AAAATGAGCA
* * * * ** * *
36287097 TTCTTATTTTTGAGAATTTGAGACATCGTGTCCTACCTTACGGGCCATGATTTTCTTCCCGATTA
1 TTCTTATTTTCGAGAATTAGAGACATCATGTCCTAACTTACAAGACATGATTTTCTTCCCGACTA
*
36287162 ACTCAAAATACGAAGACATTCTTCATAAAATTTGATTTAAT
66 ACTCAAAATACGAAGACATTCTTCATAAAATTTGATGTAAT
*
36287203 TTCTTATTTTCGAGAATTCAG-GACGTCATGTCCTAACTTACAAGACATGATTTTCTTCCCGACT
1 TTCTTATTTTCGAGAATT-AGAGACATCATGTCCTAACTTACAAGACATGATTTTCTTCCCGACT
* * * *
36287267 AACTCGAAATATGAAGGCATTTTTCATAAAATTTGATGTAAT
65 AACTCAAAATACGAAGACATTCTTCATAAAATTTGATGTAAT
36287309 T
1 T
36287310 AGTGATATTT
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
106 91 0.99
107 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (106 bp):
TTCTTATTTTCGAGAATTAGAGACATCATGTCCTAACTTACAAGACATGATTTTCTTCCCGACTA
ACTCAAAATACGAAGACATTCTTCATAAAATTTGATGTAAT
Found at i:36292644 original size:23 final size:24
Alignment explanation
Indices: 36292598--36292652 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 24
36292588 TAAAACAAAT
*
36292598 AATAATAATAAAGAAAGAAAGAAAG
1 AATAATAATAAAGAAAGAGA-AAAG
*
36292623 AAATAATAATAAGGAAAG-GAAAAG
1 -AATAATAATAAAGAAAGAGAAAAG
36292647 AATAAT
1 AATAAT
36292653 GGATGAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 6 0.22
24 4 0.15
25 1 0.04
26 16 0.59
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.15
Consensus pattern (24 bp):
AATAATAATAAAGAAAGAGAAAAG
Found at i:36298763 original size:14 final size:14
Alignment explanation
Indices: 36298744--36298774 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
36298734 TGATTGTTTT
36298744 TAATCTAAATTTAC
1 TAATCTAAATTTAC
*
36298758 TAATCTAATTTTAC
1 TAATCTAAATTTAC
36298772 TAA
1 TAA
36298775 GAATGCAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (14 bp):
TAATCTAAATTTAC
Found at i:36304351 original size:50 final size:50
Alignment explanation
Indices: 36304290--36304390 Score: 121
Period size: 50 Copynumber: 2.0 Consensus size: 50
36304280 ACATAGGAGT
* * * *
36304290 TCTCATATCGGTGCCCATGCCATGTGCCAGACATGATCTTACGGGGGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAGACATGATCTTACAGGGGACC
* * * * *
36304340 TCTCATCTCGGTGTCAACGCCATGTCCCATACATGGTCTTACATGGGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAGACATGATCTTACAGGGGACC
36304390 T
1 T
36304391 ATAATAACCT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.27
Consensus pattern (50 bp):
TCTCATATCGGTGCCAACGCCATGTCCCAGACATGATCTTACAGGGGACC
Found at i:36320827 original size:16 final size:16
Alignment explanation
Indices: 36320806--36320837 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36320796 ATCCCAACCT
*
36320806 TATGTAGTATGTCATG
1 TATGTAGTATGCCATG
36320822 TATGTAGTATGCCATG
1 TATGTAGTATGCCATG
36320838 CTCAGAATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.41
Consensus pattern (16 bp):
TATGTAGTATGCCATG
Found at i:36320966 original size:27 final size:26
Alignment explanation
Indices: 36320893--36320979 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 26
36320883 GAACAAATCA
* *
36320893 GTCA-TTTACCCTCTAGGGGCATTACG
1 GTCATTTTACCCT-TGGGGGTATTACG
* *
36320919 GTCATTTTA-CCTTGCAAGGGTATTTCG
1 GTCATTTTACCCTTG--GGGGTATTACG
36320946 GTCATTTTACCCTATGGGGGTATTACG
1 GTCATTTTACCCT-TGGGGGTATTACG
36320973 GTCATTT
1 GTCATTT
36320980 AACAACCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
25 1 0.02
26 7 0.14
27 37 0.74
28 3 0.06
29 2 0.04
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCCTTGGGGGTATTACG
Found at i:36325102 original size:43 final size:43
Alignment explanation
Indices: 36325049--36325233 Score: 282
Period size: 43 Copynumber: 4.3 Consensus size: 43
36325039 TTTTATAACT
36325049 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * **
36325092 AAACGCCGCTAAAGACCAAGACCTTTAGTGGCGCTTTTTTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
*
36325135 AAACGCCGCTAAAGACCATGACCTTTAGCGGTGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* **
36325178 AAACGCCGCTAAAGAACATGGA-CTTTAGCGGCGCTTACCCCAC
1 AAACGCCGCTAAAGACCAT-GACCTTTAGCGGCGCTTTTCCCAC
36325221 AAACGCCGCTAAA
1 AAACGCCGCTAAA
36325234 AATACAGTTC
Statistics
Matches: 128, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
43 126 0.98
44 2 0.02
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:36325151 original size:86 final size:86
Alignment explanation
Indices: 36325026--36325233 Score: 294
Period size: 86 Copynumber: 2.4 Consensus size: 86
36325016 AGGGTCGCTA
*
36325026 ACTTTAGCGGCG-TTTTTATAACTAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCC
1 ACTTTAGCGGCGCTTTTT-TCAC-AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCC
*
36325090 ACAAACGCCGCTAAAGACCA-AG
64 ACAAACGCCGCTAAAGAACATAG
* *
36325112 ACCTTTAGTGGCGCTTTTTTCACAAACGCCGCTAAAGACCATGACCTTTAGCGGTGCTTTTCCCA
1 A-CTTTAGCGGCGCTTTTTTCACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCA
*
36325177 CAAACGCCGCTAAAGAACATGG
65 CAAACGCCGCTAAAGAACATAG
****
36325199 ACTTTAGCGGCGCTTACCCCACAAACGCCGCTAAA
1 ACTTTAGCGGCGCTTTTTTCACAAACGCCGCTAAA
36325234 AATACAGTTC
Statistics
Matches: 109, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
86 89 0.82
87 15 0.14
88 5 0.05
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (86 bp):
ACTTTAGCGGCGCTTTTTTCACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
AAACGCCGCTAAAGAACATAG
Found at i:36328307 original size:24 final size:24
Alignment explanation
Indices: 36328275--36328334 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
36328265 CGTTGAAGGC
36328275 AGAAATAGATAACTTAAACAAATT
1 AGAAATAGATAACTTAAACAAATT
* *
36328299 AGAAATAGATAAATTAAACAACTT
1 AGAAATAGATAACTTAAACAAATT
36328323 AG-AATAGATAAC
1 AGAAATAGATAAC
36328335 AGTAGTCTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 9 0.27
24 24 0.73
ACGTcount: A:0.58, C:0.08, G:0.10, T:0.23
Consensus pattern (24 bp):
AGAAATAGATAACTTAAACAAATT
Found at i:36329965 original size:16 final size:16
Alignment explanation
Indices: 36329933--36329966 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36329923 ACATACCTAA
* *
36329933 ATATATATCCATCCAT
1 ATATATATCAATACAT
36329949 ATATATATCAATACAT
1 ATATATATCAATACAT
36329965 AT
1 AT
36329967 TTTAACTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATATATCAATACAT
Found at i:36330052 original size:14 final size:13
Alignment explanation
Indices: 36330026--36330051 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36330016 TGGTTTAGAT
36330026 TAAATTTTTAAAA
1 TAAATTTTTAAAA
36330039 TAAATTTTTAAAA
1 TAAATTTTTAAAA
36330052 AAACTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TAAATTTTTAAAA
Found at i:36330530 original size:14 final size:15
Alignment explanation
Indices: 36330511--36330543 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
36330501 CTTAAACCAA
36330511 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
36330525 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
36330540 AATC
1 AATC
36330544 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:36331103 original size:110 final size:110
Alignment explanation
Indices: 36330931--36331258 Score: 446
Period size: 110 Copynumber: 3.0 Consensus size: 110
36330921 ATAGACAGAT
* *
36330931 AAAGCTCAGAAAACGGCGCCGTTTGGATTTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAA
1 AAAGCTCAAAAAACGGCGCCGTTTGGA--TTTTTTTTGCGGCACTTTCCCAAAAACGCCGCTAAA
* * * * *
36330996 GCCCTGAGTATTAGCGACGCTTTCTTAAAAACGCCACTAAATCTATG
64 ACCCTGAGCATTAGCGACGCTTTCTTAAAAACGCCGCTAAATCCACG
* *
36331043 AAAGCTCAAAAAACGGCGCCGTTTGGATTTTTTTTGCGGCACTTTCCCAAAAATGCCGCTAAATC
1 AAAGCTCAAAAAACGGCGCCGTTTGGATTTTTTTTGCGGCACTTTCCCAAAAACGCCGCTAAAAC
36331108 CCTGAGCATTAGC-AGCGCTTTCTTAAAAACGCCGCTAAATCCACG
66 CCTGAGCATTAGCGA-CGCTTTCTTAAAAACGCCGCTAAATCCACG
* * * **
36331153 AAAGATCACAAAACGGCGCCG-TTGGGTTTATTTTTTTGGCACTTTCCCAAAAACGCCGC-AAAA
1 AAAGCTCAAAAAACGGCGCCGTTTGGATTT-TTTTTGCGGCACTTTCCCAAAAACGCCGCTAAAA
* * *
36331216 TCTTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCC
65 CCCTGAGCATTAGCGACGCTTTCTTAAAAACGCCGCTAAATCC
36331259 CTGAGCATTA
Statistics
Matches: 195, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
109 50 0.26
110 119 0.61
112 26 0.13
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (110 bp):
AAAGCTCAAAAAACGGCGCCGTTTGGATTTTTTTTGCGGCACTTTCCCAAAAACGCCGCTAAAAC
CCTGAGCATTAGCGACGCTTTCTTAAAAACGCCGCTAAATCCACG
Found at i:36331254 original size:150 final size:151
Alignment explanation
Indices: 36331091--36331410 Score: 518
Period size: 150 Copynumber: 2.1 Consensus size: 151
36331081 GCACTTTCCC
*
36331091 AAAAATGCCGCTAAATCCCTGAGCATTAGCAGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAA
1 AAAAACGCCGCTAAATCCCTGAGCATTAGCAGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAA
*
36331156 GATCACAAAACGGCGCCGTTGGGTTTATTTTTTT-GGCACTTTCCCAAAAACGCCGCAAAAT-CT
66 GATCACAAAACGGCGCCGTTGGGTTT-TTTTTTTCGGCACTTTCCCAAAAACGCCGCAAAATCCC
*
36331219 TGAGCATTAGCGGCGCTTTCTT
130 TGAGCATTACCGGCGCTTTCTT
*
36331241 AAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAA
1 AAAAACGCCGCTAAATCCCTGAGCATTAGCAGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAA
* * * * *
36331306 GCTCAGAAAACGGCGCCGTTTGGTTTTTTTTTTGCGGCACTTTTCCAAAAACGCCGCTAAATCCC
66 GATCACAAAACGGCGCCGTTGGGTTTTTTTTTT-CGGCACTTTCCCAAAAACGCCGCAAAATCCC
36331371 TGAGCATTACCGGCGCTTTCTT
130 TGAGCATTACCGGCGCTTTCTT
*
36331393 AAAAACGCAGCTAAATCC
1 AAAAACGCCGCTAAATCC
36331411 ACGAAAGCTC
Statistics
Matches: 157, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
149 7 0.04
150 86 0.55
151 25 0.16
152 39 0.25
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (151 bp):
AAAAACGCCGCTAAATCCCTGAGCATTAGCAGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAA
GATCACAAAACGGCGCCGTTGGGTTTTTTTTTTCGGCACTTTCCCAAAAACGCCGCAAAATCCCT
GAGCATTACCGGCGCTTTCTT
Found at i:36331276 original size:41 final size:41
Alignment explanation
Indices: 36331201--36331299 Score: 173
Period size: 41 Copynumber: 2.4 Consensus size: 41
36331191 GCACTTTCCC
* *
36331201 AAAAACGCCGCAAAAT-CTTGAGCATTAGCGGCGCTTTCTT
1 AAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTT
36331241 AAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTT
1 AAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTT
36331282 AAAAACGCCGCTAAATCC
1 AAAAACGCCGCTAAATCC
36331300 ACGAAAGCTC
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
40 15 0.27
41 41 0.73
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (41 bp):
AAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTT
Found at i:36331422 original size:111 final size:111
Alignment explanation
Indices: 36331241--36331704 Score: 698
Period size: 112 Copynumber: 4.2 Consensus size: 111
36331231 GCGCTTTCTT
*
36331241 AAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAA
1 AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAA
* *
36331306 GCTCAGAAAACGGCGCCGTTTGGTTTTTTTTTTGCGGCACTTTTCC
66 GCTCAGAAAACGGCGCCGTTGGGTTTTTTTTTTGCGGCACTTTCCC
* * *
36331352 AAAAACGCCGCTAAATCCCTGAGCATTACCGGCGCTTTCTTAAAAACGCAGCTAAATCCACGAAA
1 AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAA
* * *
36331417 GCTCAGAAAACGACGCTGTTGGG-TTTTTTTTTGCGGCGCTTTCCC
66 GCTCAGAAAACGGCGCCGTTGGGTTTTTTTTTTGCGGCACTTTCCC
* * *
36331462 AAAAATGCCGCTAAAGCCCTGAGCATTAGCGACGC-TTCTTAAAAGCGCCGCTAAATCCACGAAA
1 AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAA
* * * *
36331526 TCTCAGAAAACGGCACCGTTGGGATTATTTTTTTTGCAGCGCTTTCCC
66 GCTCAGAAAACGGCGCCGTTGGG-TT-TTTTTTTTGCGGCACTTTCCC
* * *
36331574 AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTTTTAAAAACACCGCTAAATCCACAAAA
1 AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAA
* *
36331639 GCTCAGAAAATGGCGCCGTTGGGTTTATTTTTTTGAGGCACTTTCCC
66 GCTCAGAAAACGGCGCCGTTGGGTTT-TTTTTTTGCGGCACTTTCCC
36331686 AAAAACGCCGCTAAAGCCC
1 AAAAACGCCGCTAAAGCCC
36331705 CGAAAGTTCA
Statistics
Matches: 318, Mismatches: 30, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
109 46 0.14
110 51 0.16
111 85 0.27
112 91 0.29
113 45 0.14
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (111 bp):
AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAA
GCTCAGAAAACGGCGCCGTTGGGTTTTTTTTTTGCGGCACTTTCCC
Found at i:36331463 original size:261 final size:261
Alignment explanation
Indices: 36330968--36331519 Score: 822
Period size: 261 Copynumber: 2.1 Consensus size: 261
36330958 TTTTTTTTTT
** * *
36330968 GCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGTATTAGCGACGCTTTCTTAAAAACGCCAC
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTAGCGACGCTTTCTTAAAAACGCCAC
* * *
36331033 TAAATCTATGAAAGCTCAAAAAACGGCGCCGTTTGGATTTTTTTTGCGGCACTTTCCCAAAAATG
66 TAAATCCACGAAAGCTCAAAAAACGGCGCCGTTTGGATTTTTTTTGCGGCACTTTCCCAAAAACG
* *
36331098 CCGCTAAATCCCTGAGCATTAGCAGCGCTTTCTTAAAAACGCCGCTAAATCCACGAAAGATCACA
131 CCGCTAAATCCCTGAGCATTACCAGCGCTTTCTTAAAAACGCAGCTAAATCCACGAAAGATCACA
* * * *
36331163 AAACGGCGCCGTTGGGTTTATTTTTTTGGCACTTTCCCAAAAACGCCGC-AAAATCTTGAGCATT
196 AAACGACGCCGTTGGGTTTATTTTTTCGGCACTTTCCCAAAAACGCCGCTAAAACCCTGAGCATT
36331227 A
261 A
* *
36331228 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTAGCGACGCTTTCTTAAAAACGCCAC
* * *
36331293 TAAATCCACGAAAGCTCAGAAAACGGCGCCGTTTGGTTTTTTTTTTGCGGCACTTTTCCAAAAAC
66 TAAATCCACGAAAGCTCAAAAAACGGCGCCGTTTGG-ATTTTTTTTGCGGCACTTTCCCAAAAAC
* * *
36331358 GCCGCTAAATCCCTGAGCATTACCGGCGCTTTCTTAAAAACGCAGCTAAATCCACGAAAGCTCAG
130 GCCGCTAAATCCCTGAGCATTACCAGCGCTTTCTTAAAAACGCAGCTAAATCCACGAAAGATCAC
* * * *
36331423 AAAACGACGCTGTTGGGTTT-TTTTTTGCGGCGCTTTCCCAAAAATGCCGCTAAAGCCCTGAGCA
195 AAAACGACGCCGTTGGGTTTATTTTTT-CGGCACTTTCCCAAAAACGCCGCTAAAACCCTGAGCA
36331487 TTA
259 TTA
* *
36331490 GCGACGC-TTCTTAAAAGCGCCGCTAAATCC
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCC
36331520 ACGAAATCTC
Statistics
Matches: 262, Mismatches: 27, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
260 98 0.37
261 145 0.55
262 19 0.07
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (261 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTAGCGACGCTTTCTTAAAAACGCCAC
TAAATCCACGAAAGCTCAAAAAACGGCGCCGTTTGGATTTTTTTTGCGGCACTTTCCCAAAAACG
CCGCTAAATCCCTGAGCATTACCAGCGCTTTCTTAAAAACGCAGCTAAATCCACGAAAGATCACA
AAACGACGCCGTTGGGTTTATTTTTTCGGCACTTTCCCAAAAACGCCGCTAAAACCCTGAGCATT
A
Found at i:36331491 original size:371 final size:374
Alignment explanation
Indices: 36330931--36331632 Score: 1083
Period size: 371 Copynumber: 1.9 Consensus size: 374
36330921 ATAGACAGAT
*
36330931 AAAGCTCAGAAAACGGCGCCGTTTGGATTTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAA
1 AAAGCTCAGAAAACGGCGCCGTTTGGATTTTTTTTTTGCGGCACTTTCCCAAAAACGCCGCTAAA
* * * * *
36330996 GCCCTGAGTATTAGCGACGCTTTCTTAAAAACGCCACTAAATCTATGAAAGCTCAAAAAACGGCG
66 GCCCTGAGCATTACCGACGCTTTCTTAAAAACGCCACTAAATCCACGAAAGCTCAAAAAACGACG
* *
36331061 CCGTTTGGATTTTTTTTGCGGCACTTTCCCAAAAATGCCGCTAAATCCCTGAGCATTAGC-AGCG
131 CCGTTGGGATTTTTTTTGCGGCACTTTCCCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGA-CG
* *
36331125 CTTTCTTAAAAACGCCGCTAAATCCACGAAAGATCACAAAACGGCGCCGTTGGGTTTA-TTTTTT
195 C-TTCTTAAAAACGCCGCTAAATCCACGAAAGATCACAAAACGGCACCGTTGGGATTATTTTTTT
* * *
36331189 TG-GCACTTTCCCAAAAACGCCGC-AAAATCTTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
259 TGAGCACTTTCCCAAAAACGCCGCTAAAACCCTGAGCATTAGCGGCGCTTTCTTAAAAACACCGC
36331252 TAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACG
324 TAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACG
*
36331303 AAAGCTCAGAAAACGGCGCCGTTTGG-TTTTTTTTTTGCGGCACTTTTCCAAAAACGCCGCTAAA
1 AAAGCTCAGAAAACGGCGCCGTTTGGATTTTTTTTTTGCGGCACTTTCCCAAAAACGCCGCTAAA
* * *
36331367 TCCCTGAGCATTACCGGCGCTTTCTTAAAAACG-CAGCTAAATCCACGAAAGCTCAGAAAACGAC
66 GCCCTGAGCATTACCGACGCTTTCTTAAAAACGCCA-CTAAATCCACGAAAGCTCAAAAAACGAC
* * *
36331431 GCTGTTGGGTTTTTTTTTGCGGCGCTTTCCCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGACG
130 GCCGTTGGGATTTTTTTTGCGGCACTTTCCCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGACG
* ** *
36331496 CTTCTTAAAAGCGCCGCTAAATCCACGAAATCTCAGAAAACGGCACCGTTGGGATTATTTTTTTT
195 CTTCTTAAAAACGCCGCTAAATCCACGAAAGATCACAAAACGGCACCGTTGGGATTATTTTTTTT
* * *
36331561 GCAGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTTTTAAAAACACCGC
260 G-AGCACTTTCCCAAAAACGCCGCTAAAACCCTGAGCATTAGCGGCGCTTTCTTAAAAACACCGC
36331626 TAAATCC
324 TAAATCC
36331633 ACAAAAGCTC
Statistics
Matches: 297, Mismatches: 27, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
370 52 0.18
371 156 0.53
372 27 0.09
373 20 0.07
374 42 0.14
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (374 bp):
AAAGCTCAGAAAACGGCGCCGTTTGGATTTTTTTTTTGCGGCACTTTCCCAAAAACGCCGCTAAA
GCCCTGAGCATTACCGACGCTTTCTTAAAAACGCCACTAAATCCACGAAAGCTCAAAAAACGACG
CCGTTGGGATTTTTTTTGCGGCACTTTCCCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGACGC
TTCTTAAAAACGCCGCTAAATCCACGAAAGATCACAAAACGGCACCGTTGGGATTATTTTTTTTG
AGCACTTTCCCAAAAACGCCGCTAAAACCCTGAGCATTAGCGGCGCTTTCTTAAAAACACCGCTA
AATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCACG
Found at i:36331600 original size:112 final size:111
Alignment explanation
Indices: 36331231--36331704 Score: 684
Period size: 111 Copynumber: 4.3 Consensus size: 111
36331221 AGCATTAGCG
** *
36331231 GCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAA
1 GCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAA
* *
36331296 ATCCACGAAAGCTCAGAAAACGGCGCCGTTTGGTTTTTTTTTTGCG
66 ATCCACGAAAGCTCAGAAAACGGCGCCGTTGGGTTTTTTTTTTGCA
* * * * *
36331342 GCACTTTTCCAAAAACGCCGCTAAATCCCTGAGCATTACCGGCGCTTTCTTAAAAACGCAGCTAA
1 GCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAA
* * *
36331407 ATCCACGAAAGCTCAGAAAACGACGCTGTTGGG-TTTTTTTTTGCG
66 ATCCACGAAAGCTCAGAAAACGGCGCCGTTGGGTTTTTTTTTTGCA
* * *
36331452 GCGCTTTCCCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGACGC-TTCTTAAAAGCGCCGCTAA
1 GCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAA
* *
36331516 ATCCACGAAATCTCAGAAAACGGCACCGTTGGGATTATTTTTTTTGCA
66 ATCCACGAAAGCTCAGAAAACGGCGCCGTTGGG-TT-TTTTTTTTGCA
* *
36331564 GCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTTTTAAAAACACCGCTAA
1 GCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAA
* *
36331629 ATCCACAAAAGCTCAGAAAATGGCGCCGTTGGGTTTATTTTTTTG-A
66 ATCCACGAAAGCTCAGAAAACGGCGCCGTTGGGTTT-TTTTTTTGCA
*
36331675 GGCACTTTCCCAAAAACGCCGCTAAAGCCC
1 -GCGCTTTCCCAAAAACGCCGCTAAAGCCC
36331705 CGAAAGTTCA
Statistics
Matches: 325, Mismatches: 32, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
109 46 0.14
110 51 0.16
111 92 0.28
112 91 0.28
113 45 0.14
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (111 bp):
GCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAA
ATCCACGAAAGCTCAGAAAACGGCGCCGTTGGGTTTTTTTTTTGCA
Found at i:36333890 original size:22 final size:22
Alignment explanation
Indices: 36333832--36333890 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
36333822 GAATGGTATC
36333832 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
36333854 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
36333877 TACATATCAAATCT
1 TACAAATCAAATCT
36333891 ACGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:36339114 original size:22 final size:22
Alignment explanation
Indices: 36339056--36339114 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
36339046 GAATGGTATC
36339056 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
36339078 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
36339101 TACATATCAAATCT
1 TACAAATCAAATCT
36339115 ACGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:36341229 original size:99 final size:99
Alignment explanation
Indices: 36341083--36341297 Score: 265
Period size: 99 Copynumber: 2.2 Consensus size: 99
36341073 CTGCTCCTAA
* * * *
36341083 AAGATGGAGTTTATACGACTCAACCGGTTTACTCAGAGCGTAAGGTTAACTCAGTTGAAA-CAAA
1 AAGATGGAGTTTATACAAATCAACCGGCTCACTCAGAGCGTAAGGTTAACTCAGTT-AAAGCAAA
*
36341147 TCAAT-TTAACAGTCATATTGGAAGTAGCCTCCAAG
65 T-AATCTCAACAGTCATATTGGAAGTAGCCTCCAAG
* * * * *
36341182 AAGATGGAGTATATACAAATCAACCGGCTCACTC-GGGCCGTAGGGTTAACTTAGTTAAAGCCAA
1 AAGATGGAGTTTATACAAATCAACCGGCTCACTCAGAG-CGTAAGGTTAACTCAGTTAAAGCAAA
** *
36341246 TAATCTCAATGGTCATATTGGAAGTAGCCTCCTAG
65 TAATCTCAACAGTCATATTGGAAGTAGCCTCCAAG
36341281 AAGATGGAGTTTATACA
1 AAGATGGAGTTTATACA
36341298 GCTAAACCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
98 8 0.08
99 91 0.92
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (99 bp):
AAGATGGAGTTTATACAAATCAACCGGCTCACTCAGAGCGTAAGGTTAACTCAGTTAAAGCAAAT
AATCTCAACAGTCATATTGGAAGTAGCCTCCAAG
Found at i:36342946 original size:50 final size:50
Alignment explanation
Indices: 36342871--36342968 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 50
36342861 GAACATACTC
* *
36342871 ACCTACCAAAATCCATTTCTCTCTTGACTATATCTCTATGTTAGTTCATT
1 ACCTACCAAAATCAATTTCTCTCTTGACTATATCTCTATGTTAATTCATT
36342921 ACCTACCAAAATCAATTTCTCTCTTGACTATATCTCTATGTTAATTCA
1 ACCTACCAAAATCAATTTCTCTCTTGACTATATCTCTATGTTAATTCA
36342969 CCCGATTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.41
Consensus pattern (50 bp):
ACCTACCAAAATCAATTTCTCTCTTGACTATATCTCTATGTTAATTCATT
Found at i:36346318 original size:22 final size:19
Alignment explanation
Indices: 36346280--36346317 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
36346270 TGCAAAGTTG
36346280 ATAATATTTAATATATATT
1 ATAATATTTAATATATATT
36346299 ATAATAATTATAAT-TATAT
1 ATAAT-ATT-TAATATATAT
36346318 ACTAGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
ATAATATTTAATATATATT
Found at i:36346438 original size:30 final size:30
Alignment explanation
Indices: 36346381--36346439 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
36346371 TGCCTTTGAA
* *
36346381 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACACCAAATTTTT
36346411 AATATTTACAAAAAGAG-CGACCAAATTTT
1 AATATTTACAAAAAGAGAC-ACCAAATTTT
36346440 GAAAATAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACACCAAATTTTT
Found at i:36353457 original size:12 final size:12
Alignment explanation
Indices: 36353430--36353495 Score: 55
Period size: 12 Copynumber: 5.5 Consensus size: 12
36353420 TTTAGCCATT
36353430 TTATTTTTATT-
1 TTATTTTTATTG
*
36353441 ATATTTTTATTG
1 TTATTTTTATTG
*
36353453 TTATTTTTAGTG
1 TTATTTTTATTG
* *
36353465 TAATTTTTGTTG
1 TTATTTTTATTG
*
36353477 TCTAATTTTTCTT-
1 T-T-ATTTTTATTG
36353490 TTATTT
1 TTATTT
36353496 GCTTCTGGCA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
11 14 0.32
12 21 0.48
13 1 0.02
14 8 0.18
ACGTcount: A:0.18, C:0.03, G:0.08, T:0.71
Consensus pattern (12 bp):
TTATTTTTATTG
Found at i:36359766 original size:4 final size:4
Alignment explanation
Indices: 36359757--36359790 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
36359747 GCCTTTTCTT
*
36359757 TTTA TTTA TTTA TTTA -TTA TTTA TTTC TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
36359791 TATCCTTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:36359778 original size:15 final size:15
Alignment explanation
Indices: 36359758--36359789 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
36359748 CCTTTTCTTT
36359758 TTATTTATTTATTTA
1 TTATTTATTTATTTA
*
36359773 TTATTTATTTCTTTA
1 TTATTTATTTATTTA
36359788 TT
1 TT
36359790 TTATCCTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (15 bp):
TTATTTATTTATTTA
Found at i:36361435 original size:6 final size:6
Alignment explanation
Indices: 36361424--36361450 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
36361414 AGTTTATTTG
36361424 TTTTAT TTTTAT TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTT
36361451 CTTAAACTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:36365723 original size:42 final size:42
Alignment explanation
Indices: 36365671--36365888 Score: 275
Period size: 42 Copynumber: 5.2 Consensus size: 42
36365661 TAAGGTTTAT
*
36365671 TGCCAGTGAAACAATATCAGACTTTACGTCTAGCAGGCTTAA
1 TGCCGGTGAAACAATATCAGACTTTACGTCTAGCAGGCTTAA
* *
36365713 TGCCGGTGAAATAATTTCAGACTTTACGTCTAGCAGGCTTAA
1 TGCCGGTGAAACAATATCAGACTTTACGTCTAGCAGGCTTAA
*
36365755 TGCCGATGAAACAATATCAGACTTTACGTCTAGCAGGCTTAA
1 TGCCGGTGAAACAATATCAGACTTTACGTCTAGCAGGCTTAA
* * *
36365797 TGCCGGTGAAAC-ATTTCAGACTATATGTCTAGCAGGC-TAA
1 TGCCGGTGAAACAATATCAGACTTTACGTCTAGCAGGCTTAA
* * *
36365837 GTGCCGGTG-TACTGA-ATCAGACTTTAAGTCTAGCAGGC-TAA
1 -TGCCGGTGAAAC-AATATCAGACTTTACGTCTAGCAGGCTTAA
*
36365878 GTGCCAGTGAA
1 -TGCCGGTGAA
36365889 TTTGTTTAAA
Statistics
Matches: 156, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
40 5 0.03
41 61 0.39
42 90 0.58
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (42 bp):
TGCCGGTGAAACAATATCAGACTTTACGTCTAGCAGGCTTAA
Found at i:36375997 original size:6 final size:6
Alignment explanation
Indices: 36375987--36376056 Score: 101
Period size: 6 Copynumber: 12.2 Consensus size: 6
36375977 AGAAAATATC
*
36375987 AATAAA CAT-AA AAT-AA AATAAA AATAAA AATAAA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
*
36376033 AATAAA ACTAAA AAT-AA AATAAA A
1 AATAAA AATAAA AATAAA AATAAA A
36376057 TGAATAGATT
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
5 14 0.24
6 44 0.76
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:36377961 original size:21 final size:19
Alignment explanation
Indices: 36377935--36377977 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 19
36377925 TTTTCGATAG
*
36377935 AATTTTTGTCATAAAATAATT
1 AATTTTT-T-ATAAAATAATA
36377956 AA-TTTTTATAAAATAATA
1 AATTTTTTATAAAATAATA
36377974 AATT
1 AATT
36377978 GTATTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
18 12 0.60
19 2 0.10
20 4 0.20
21 2 0.10
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (19 bp):
AATTTTTTATAAAATAATA
Found at i:36377985 original size:18 final size:18
Alignment explanation
Indices: 36377945--36377986 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
36377935 AATTTTTGTC
* *
36377945 ATAAAATAATTAATTTTT
1 ATAAAATAATAAATTTAT
36377963 ATAAAATAATAAATTGTAT
1 ATAAAATAATAAATT-TAT
36377982 -TAAAA
1 ATAAAA
36377987 ATTTGAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 19 0.90
19 2 0.10
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
ATAAAATAATAAATTTAT
Found at i:36378045 original size:20 final size:21
Alignment explanation
Indices: 36378001--36378048 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
36377991 GAACATGTTA
36378001 ATTTTTAGTCAATTTTACAATT
1 ATTTTTAGTCAATTTTA-AATT
* *
36378023 ATTTTTAGTGAATTTT-GATT
1 ATTTTTAGTCAATTTTAAATT
36378043 ATTTTT
1 ATTTTT
36378049 GACAAATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.38
22 15 0.62
ACGTcount: A:0.27, C:0.04, G:0.08, T:0.60
Consensus pattern (21 bp):
ATTTTTAGTCAATTTTAAATT
Found at i:36380537 original size:30 final size:30
Alignment explanation
Indices: 36380481--36380538 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
36380471 TTCTTTGAAC
* *
36380481 ATATTTATAAAAAGAGACATCTAATTTTTA
1 ATATTTATAAAAAGAGACACCAAATTTTTA
36380511 ATATTTATAAAAAGAG-CAACCAAATTTT
1 ATATTTATAAAAAGAGAC-ACCAAATTTT
36380539 GAAAATAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (30 bp):
ATATTTATAAAAAGAGACACCAAATTTTTA
Found at i:36384529 original size:30 final size:30
Alignment explanation
Indices: 36384495--36384571 Score: 77
Period size: 28 Copynumber: 2.6 Consensus size: 30
36384485 AGAATCAGTC
*
36384495 TGGGCCTGAGCCCATTACAATAAAAGTGTG
1 TGGGCCTGAGCCCAATACAATAAAAGTGTG
* * * *
36384525 TGGGCCTTAGCCTAATACAGTAACA--GTG
1 TGGGCCTGAGCCCAATACAATAAAAGTGTG
* *
36384553 TGGGCCTTAGCCTAATACA
1 TGGGCCTGAGCCCAATACA
36384572 GTAATTAGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 22 0.52
30 20 0.48
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.25
Consensus pattern (30 bp):
TGGGCCTGAGCCCAATACAATAAAAGTGTG
Found at i:36384561 original size:28 final size:28
Alignment explanation
Indices: 36384522--36384575 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
36384512 CAATAAAAGT
36384522 GTGTGGGCCTTAGCCTAATACAGTAACA
1 GTGTGGGCCTTAGCCTAATACAGTAACA
36384550 GTGTGGGCCTTAGCCTAATACAGTAA
1 GTGTGGGCCTTAGCCTAATACAGTAA
36384576 TTAGTACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (28 bp):
GTGTGGGCCTTAGCCTAATACAGTAACA
Found at i:36384740 original size:26 final size:26
Alignment explanation
Indices: 36384692--36384762 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
36384682 ATATCGCAAC
* * * *
36384692 AAAGCTTCCAGTAATAATGACGCAGT
1 AAAGCTGCCAGTAACAGTAACGCAGT
36384718 AAAGCTGCCAGTAACAGTAACGCAGT
1 AAAGCTGCCAGTAACAGTAACGCAGT
*
36384744 AAGGCTGCCAGTAACAGTA
1 AAAGCTGCCAGTAACAGTA
36384763 TATGTGGCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
AAAGCTGCCAGTAACAGTAACGCAGT
Found at i:36384966 original size:27 final size:27
Alignment explanation
Indices: 36384936--36385104 Score: 189
Period size: 27 Copynumber: 6.3 Consensus size: 27
36384926 GGGTAAAACA
36384936 GTCATTTTACCCTAT-GAGGGTATTTCG
1 GTCATTTTACCCT-TCGAGGGTATTTCG
* *
36384963 GTCATTGTACTCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
* * *
36384990 ATCATTTTA-TCTATCGAGGGTATTTCA
1 GTCATTTTACCCT-TCGAGGGTATTTCG
* * *
36385017 GTTATTTTATCTTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
*
36385044 GTCATTTTATCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
** * *
36385071 GTCATTTTACCCTTTAAGGGTTTTTCA
1 GTCATTTTACCCTTCGAGGGTATTTCG
36385098 GTCATTT
1 GTCATTT
36385105 GCCCATGAAT
Statistics
Matches: 122, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.03
27 117 0.96
28 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.46
Consensus pattern (27 bp):
GTCATTTTACCCTTCGAGGGTATTTCG
Found at i:36385078 original size:54 final size:55
Alignment explanation
Indices: 36384936--36385104 Score: 211
Period size: 54 Copynumber: 3.1 Consensus size: 55
36384926 GGGTAAAACA
* *
36384936 GTCATTTTACCCTAT-GAGGGTATTTCGGTCATTGTACTCTTCGAGGGTATTTCG
1 GTCATTTTATCCTATCGAGGGTATTTCGGTCATTTTACTCTTCGAGGGTATTTCG
* * *
36384990 ATCATTTTAT-CTATCGAGGGTATTTCAGTTATTTTA-TCTTTCGAGGGTATTTCG
1 GTCATTTTATCCTATCGAGGGTATTTCGGTCATTTTACTC-TTCGAGGGTATTTCG
* ** * *
36385044 GTCATTTTATCCT-TCGAGGGTATTTCGGTCATTTTACCCTTTAAGGGTTTTTCA
1 GTCATTTTATCCTATCGAGGGTATTTCGGTCATTTTACTCTTCGAGGGTATTTCG
36385098 GTCATTT
1 GTCATTT
36385105 GCCCATGAAT
Statistics
Matches: 98, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.06
54 89 0.91
55 3 0.03
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.46
Consensus pattern (55 bp):
GTCATTTTATCCTATCGAGGGTATTTCGGTCATTTTACTCTTCGAGGGTATTTCG
Found at i:36385091 original size:81 final size:81
Alignment explanation
Indices: 36384934--36385104 Score: 213
Period size: 81 Copynumber: 2.1 Consensus size: 81
36384924 AGGGGTAAAA
* *
36384934 CAGTCATTTTACCCTAT-GAGGGTATTTCGGTCATTGTACTCTTCGAGGGTATTTCGATCATTTT
1 CAGTCATTTTA-TCTTTCGAGGGTATTTCGGTCATTGTACTCTTCGAGGGTATTTCGATCATTTT
* *
36384998 ATCTATCGAGGGTATTT
65 ACCTATCAAGGGTATTT
* * *
36385015 CAGTTATTTTATCTTTCGAGGGTATTTCGGTCATTTTA-TCCTTCGAGGGTATTTCGGTCATTTT
1 CAGTCATTTTATCTTTCGAGGGTATTTCGGTCATTGTACT-CTTCGAGGGTATTTCGATCATTTT
* *
36385079 ACCCT-TTAAGGGTTTTT
65 A-CCTATCAAGGGTATTT
36385096 CAGTCATTT
1 CAGTCATTT
36385105 GCCCATGAAT
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
80 4 0.05
81 71 0.92
82 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.45
Consensus pattern (81 bp):
CAGTCATTTTATCTTTCGAGGGTATTTCGGTCATTGTACTCTTCGAGGGTATTTCGATCATTTTA
CCTATCAAGGGTATTT
Found at i:36388151 original size:20 final size:20
Alignment explanation
Indices: 36388126--36388166 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
36388116 CACATGGTAG
*
36388126 TGTGTTTGAAAACCGTAACT
1 TGTGTTGGAAAACCGTAACT
* *
36388146 TGTGTTGGGAAATCGTAACT
1 TGTGTTGGAAAACCGTAACT
36388166 T
1 T
36388167 TGCTTCAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (20 bp):
TGTGTTGGAAAACCGTAACT
Found at i:36390337 original size:23 final size:23
Alignment explanation
Indices: 36390309--36390353 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
36390299 TTATATAAAT
** *
36390309 TATATTTGTTTTATTTTGTTTTA
1 TATATTTAATTTAATTTGTTTTA
36390332 TATATTTAATTTAATTTGTTTT
1 TATATTTAATTTAATTTGTTTT
36390354 TTTACATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (23 bp):
TATATTTAATTTAATTTGTTTTA
Found at i:36393329 original size:43 final size:43
Alignment explanation
Indices: 36393281--36393366 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
36393271 TTAATTACAA
36393281 CATTATTTAGTCTTGAAGTCATTACACTCAATTAACGTGATTG
1 CATTATTTAGTCTTGAAGTCATTACACTCAATTAACGTGATTG
* *
36393324 CATTATTTAGTCTTGAAGTCATTGCACTCAATTAATGTGATTG
1 CATTATTTAGTCTTGAAGTCATTACACTCAATTAACGTGATTG
36393367 AGCTCTCCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (43 bp):
CATTATTTAGTCTTGAAGTCATTACACTCAATTAACGTGATTG
Found at i:36395113 original size:36 final size:36
Alignment explanation
Indices: 36395059--36395188 Score: 118
Period size: 36 Copynumber: 3.5 Consensus size: 36
36395049 ACAAGATTAA
* * *
36395059 TTTTGTGCCTAGCACTAGTCGGATAAATCGACAATG
1 TTTTGCGCCCAGCGCTAGTCGGATAAATCGACAATG
* * *
36395095 TTTTGCGCCCAGTGCTAGTCGGATAAACCGACGATG
1 TTTTGCGCCCAGCGCTAGTCGGATAAATCGACAATG
* * * *
36395131 ATATTCGTGTGCCCAGCACTA-TCGAATAAATCGACAAAG
1 -T-TT--TGCGCCCAGCGCTAGTCGGATAAATCGACAATG
*
36395170 GTTTGCGCCCAGCGCTAGT
1 TTTTGCGCCCAGCGCTAGT
36395189 TAGATAACCG
Statistics
Matches: 73, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
35 12 0.16
36 31 0.42
37 3 0.04
38 2 0.03
39 14 0.19
40 11 0.15
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (36 bp):
TTTTGCGCCCAGCGCTAGTCGGATAAATCGACAATG
Found at i:36395126 original size:76 final size:75
Alignment explanation
Indices: 36395018--36395318 Score: 288
Period size: 76 Copynumber: 4.0 Consensus size: 75
36395008 CCATAATAAG
* * * * * * *
36395018 GTTTTGCGCCTAGCACTAGTCGTATAACCCGACAAGATTAATTTTGTGCCTAGCACTAGTCGGAT
1 GTTTTGCGCCCAGCGCTAGTCGGATAAACCGAC-AGATTAATTGTGTGCCCAGCACTAGTCGAAT
*
36395083 AAATCGACAAT
65 AAATCGACAAA
* *
36395094 GTTTTGCGCCCAGTGCTAGTCGGATAAACCGAC-GATGATATTCGTGTGCCCAGCACTA-TCGAA
1 GTTTTGCGCCCAGCGCTAGTCGGATAAACCGACAGATTA-ATT-GTGTGCCCAGCACTAGTCGAA
36395157 TAAATCGACAAA
64 TAAATCGACAAA
* **
36395169 GGTTTGCGCCCAGCGCTAGTTAGAT-AACCGAC-GATGATAATTGTGTGCCCAGCACTAGTCGAA
1 GTTTTGCGCCCAGCGCTAGTCGGATAAACCGACAGAT--TAATTGTGTGCCCAGCACTAGTCGAA
*
36395232 TAAATCAACAAA
64 TAAATCGACAAA
* * * * * * * * * *
36395244 GGTTTGTGCCCACCACTAGTTGAATAAACCGA-TGATAATACTTGTGTGCCGAGCACTAGTTGAA
1 GTTTTGCGCCCAGCGCTAGTCGGATAAACCGACAGAT--TAATTGTGTGCCCAGCACTAGTCGAA
36395308 TAAATCGACAA
64 TAAATCGACAA
36395319 CACTTACATA
Statistics
Matches: 192, Mismatches: 26, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
74 29 0.15
75 78 0.41
76 85 0.44
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (75 bp):
GTTTTGCGCCCAGCGCTAGTCGGATAAACCGACAGATTAATTGTGTGCCCAGCACTAGTCGAATA
AATCGACAAA
Found at i:36395187 original size:75 final size:75
Alignment explanation
Indices: 36395062--36395318 Score: 329
Period size: 75 Copynumber: 3.4 Consensus size: 75
36395052 AGATTAATTT
* * * * * *
36395062 TGTGCCTAGCACTAGTCGGATAAATCGACAATGTTTTGCGCCCAGTGCTAGTCGGATAAACCGAC
1 TGTGCCCAGCACTAGTCGAATAAATCGACAAAGGTTTGCGCCCAGCGCTAGTTGGATAAACCGAC
36395127 GATGATATTCG
66 GATGATATT-G
*
36395138 TGTGCCCAGCACTA-TCGAATAAATCGACAAAGGTTTGCGCCCAGCGCTAGTTAGAT-AACCGAC
1 TGTGCCCAGCACTAGTCGAATAAATCGACAAAGGTTTGCGCCCAGCGCTAGTTGGATAAACCGAC
36395201 GATGATAATTG
66 GATGAT-ATTG
* * * * * *
36395212 TGTGCCCAGCACTAGTCGAATAAATCAACAAAGGTTTGTGCCCACCACTAGTTGAATAAACCGAT
1 TGTGCCCAGCACTAGTCGAATAAATCGACAAAGGTTTGCGCCCAGCGCTAGTTGGATAAACCGAC
*
36395277 GATAATACTTG
66 GATGATA-TTG
* *
36395288 TGTGCCGAGCACTAGTTGAATAAATCGACAA
1 TGTGCCCAGCACTAGTCGAATAAATCGACAA
36395319 CACTTACATA
Statistics
Matches: 159, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
74 28 0.18
75 76 0.48
76 55 0.35
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (75 bp):
TGTGCCCAGCACTAGTCGAATAAATCGACAAAGGTTTGCGCCCAGCGCTAGTTGGATAAACCGAC
GATGATATTG
Found at i:36399144 original size:23 final size:22
Alignment explanation
Indices: 36399101--36399144 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
36399091 TTTCAAGTCA
36399101 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
36399124 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
36399145 TTAATTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:36399269 original size:23 final size:23
Alignment explanation
Indices: 36399243--36399364 Score: 172
Period size: 23 Copynumber: 5.3 Consensus size: 23
36399233 CTAAGTGCCA
*
36399243 CACTGATATGTAGCCGAAGCAAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
36399266 CACTGAAATATAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
36399289 CACTGAAATGTAGCCGAGGTTAC
1 CACTGATATGTAGCCGAAGCTAC
36399312 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
36399335 TACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
36399358 CACTGAT
1 CACTGAT
36399365 CAATAACACT
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 86 1.00
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:36402009 original size:47 final size:49
Alignment explanation
Indices: 36401886--36402009 Score: 155
Period size: 49 Copynumber: 2.6 Consensus size: 49
36401876 GTTTTCACAT
*
36401886 TGCCATAGTCCA-ACTATGGTCTTACACGTAATCACATATCACATACCGA
1 TGCCATAGTCCAGA-TATGGTCTTACACGAAATCACATATCACATACCGA
* * * * *
36401935 TGCCATAGCCCAGCTATAGTCTCACACGAAATCACATATCACA-A-TGA
1 TGCCATAGTCCAGATATGGTCTTACACGAAATCACATATCACATACCGA
*
36401982 TGCCATATTCCAGATATGGTCTTACACG
1 TGCCATAGTCCAGATATGGTCTTACACG
36402010 GAGATTTCAT
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
47 25 0.40
48 1 0.02
49 37 0.59
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (49 bp):
TGCCATAGTCCAGATATGGTCTTACACGAAATCACATATCACATACCGA
Found at i:36404080 original size:23 final size:22
Alignment explanation
Indices: 36404037--36404080 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
36404027 TTTCAAGTCA
36404037 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
36404060 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
36404081 TTAATCGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:36404204 original size:23 final size:23
Alignment explanation
Indices: 36404178--36404299 Score: 217
Period size: 23 Copynumber: 5.3 Consensus size: 23
36404168 ATAAGTGCCA
36404178 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
36404201 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
36404224 CACTGAAATGTAGCCGAAGCAAC
1 CACTGATATGTAGCCGAAGCTAC
36404247 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
36404270 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
36404293 CACTGAT
1 CACTGAT
36404300 CAATAACACT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 95 1.00
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:36408679 original size:334 final size:334
Alignment explanation
Indices: 36407302--36409194 Score: 2409
Period size: 334 Copynumber: 5.7 Consensus size: 334
36407292 TCCTTCTTCT
* ** *
36407302 CATTATTGATTCTGGTTCTGTTCAGGAAAGTTTAAAAAGTTATGGATGATTCAATGTAGTTAATT
1 CATTATTGATTCTGGTTCT-TTGAGGAAAGTGAAAAAAGTTATGGGTGATTCAATGTAGTTAATT
* * *
36407367 CAAATATTTCTTTCTCTATATGTCATATTTTGTCTG-----A--A--A----TATCAGATCTAAG
65 CAAATATGTCTTTCTCTATATGTCATACTTTGTCTGAAATAACGATTATGTCTATCAAATCTAAG
* * * * * *
36407419 --CGTGCGCCATTC-TTTCGATATAGATAGGATCGTAACCTTCACCTTAATTTTAATAT-AATTA
130 AACGT--GCCATTCGTTT-GATATAGATACGACCATATCCTTCACATTAATTTTAAT-TCAATTG
* * * *
36407480 GGGACAGATTCTCTCCCTATTCTCTAAAGGATGAATGAAAACAAGGAAGATAATCGATGTATGAT
191 GGGACAAATTCTCTCCCTCTTCTCTAAAGGATGATTTAAAACAAGGAAGATAATCGATGTATGAT
* * * ** * *
36407545 GTATCTATACAAAATTATGATTATATCACAGAGATCTGAAAACGT-TCCATGTGTTGGATAGTAG
256 GTATTTCTACAAAATTATGATTATATCGCTTAGATCTGAGAACGTGT-CATGTGTTGGATAGTTG
** *
36407609 GACAACCGTTGTCCC
320 GACAATTGTTGTTCC
* * * * * *
36407624 CACTATTGATTTTGGTTCTGTTCAAGAAAGTGAAAAAAGTTATGGGGGATTCAATGTATTTAATT
1 CATTATTGATTCTGGTTCT-TTGAGGAAAGTGAAAAAAGTTATGGGTGATTCAATGTAGTTAATT
* * *
36407689 CAAATCTGTCTTTCTCTATATGTCATACTTTATTTGAAATAACGATTATGTCTATCAAATCTAAG
65 CAAATATGTCTTTCTCTATATGTCATACTTTGTCTGAAATAACGATTATGTCTATCAAATCTAAG
* *
36407754 AACGTGCCATTCATTCGATATAGATACGACCATATCCTTCACATTAATTTTAATTCAATTGGGGA
130 AACGTGCCATTCGTTTGATATAGATACGACCATATCCTTCACATTAATTTTAATTCAATTGGGGA
* *
36407819 CAAATTCTCTCCCTCTTCTCTAAAGGATGATTTAAAGCAAGGAAAATAATCGATGTATGATGTAT
195 CAAATTCTCTCCCTCTTCTCTAAAGGATGATTTAAAACAAGGAAGATAATCGATGTATGATGTAT
* * *
36407884 TTCTACAAAATTATGATTATATCACTTAGATCTAAGAACGTGTCATGTGTTGGATAGCTGGACAA
260 TTCTACAAAATTATGATTATATCGCTTAGATCTGAGAACGTGTCATGTGTTGGATAGTTGGACAA
36407949 TTGTTTGTTCC
325 TTG-TTGTTCC
* * * *
36407960 TATTATTGATTCTAGTTCTTTGAGGAAAGTGAAAAAAGTTATGGGTGATTCGATTTAGTTAATTC
1 CATTATTGATTCTGGTTCTTTGAGGAAAGTGAAAAAAGTTATGGGTGATTCAATGTAGTTAATTC
* * * * * * * *
36408025 AAATCT-TCCTTTTTCTATGTGTCATTCTTTGTTTGAAATAGA-GATTATGTCTTTCAGATCTAG
66 AAATATGT-CTTTCTCTATATGTCATACTTTGTCTGAAATA-ACGATTATGTCTATCAAATCTAA
* * * * * * * * * *
36408088 GAACATGTCGTTCGTCTGATATAGAAACGATCATAACCTGCACCTTAATTTTAATTCAATTGGGA
129 GAACGTGCCATTCGTTTGATATAGATACGACCATATCCTTCACATTAATTTTAATTCAATTGGGG
* * *
36408153 ACAAATTCTCTCCCTCTTCTCTAAAGGGTAATTTAAAATAAGGAAGATAATCCG-TGT-TGATGT
194 ACAAATTCTCTCCCTCTTCTCTAAAGGATGATTTAAAACAAGGAAGATAAT-CGATGTATGATGT
* * * * * ** *
36408216 ATTTGTACGAAATT-TCGATTATATTGCTTAGATCTGAGAGCATGTCATGTGTTGGATACCTAGA
258 ATTTCTACAAAATTAT-GATTATATCGCTTAGATCTGAGAACGTGTCATGTGTTGGATAGTTGGA
36408280 CAATTGTTGTTCC
322 CAATTGTTGTTCC
* * * * *
36408293 CATTATGGATTCTAGTTCATTGAGGAAAGTGAAAAAAGTTATAGGTGATTCGATGTAGTTAATTC
1 CATTATTGATTCTGGTTCTTTGAGGAAAGTGAAAAAAGTTATGGGTGATTCAATGTAGTTAATTC
*
36408358 AAATCTGTCTTTCTCTATATGTCATACTTTGTCTGAAATAACGATTATGTCTATCAAATCTAAGA
66 AAATATGTCTTTCTCTATATGTCATACTTTGTCTGAAATAACGATTATGTCTATCAAATCTAAGA
* *
36408423 ACGTGCCATTTC-TTTGATAAAGATACGACCATATCCTTCACAGTAATTTTAATTCAATTGGGGA
131 ACGTGCCA-TTCGTTTGATATAGATACGACCATATCCTTCACATTAATTTTAATTCAATTGGGGA
* * * *
36408487 CAAATTCTCTCCCTTTTCTCTAAATGATGATTTAAAGCAAGGAAAATAATCGATGTATGATGTAT
195 CAAATTCTCTCCCTCTTCTCTAAAGGATGATTTAAAACAAGGAAGATAATCGATGTATGATGTAT
* *
36408552 TTCTACAAAATTATGATTATATCGCTTAGATATGAGAACGTGTCATGTGTTGGATAGTTGGACGA
260 TTCTACAAAATTATGATTATATCGCTTAGATCTGAGAACGTGTCATGTGTTGGATAGTTGGACAA
36408617 TTGTTGTTCC
325 TTGTTGTTCC
* * *
36408627 CATTATTGATTCTGGTTCTTTGAGGAAAGTGAAAAAAGTTATAGGTGATTCGATGTTGTTAATTC
1 CATTATTGATTCTGGTTCTTTGAGGAAAGTGAAAAAAGTTATGGGTGATTCAATGTAGTTAATTC
* * *
36408692 AAATATGTCTTTCTCTATATGTCATACTTTTTCTGAAATAACGATTATGTCTATTAGATCTAAGA
66 AAATATGTCTTTCTCTATATGTCATACTTTGTCTGAAATAACGATTATGTCTATCAAATCTAAGA
* *
36408757 ACATGCCATTCGTTTGATATACATACGACCATATCCTTCACATTAATTTTAATTCAATTGGGGAC
131 ACGTGCCATTCGTTTGATATAGATACGACCATATCCTTCACATTAATTTTAATTCAATTGGGGAC
* * * * * *
36408822 AAATTCTCTTCCTTTTCTCTAAAGGTTGATTTAAAGCAAGGAAGATAATCAATGTATGATGTAAT
196 AAATTCTCTCCCTCTTCTCTAAAGGATGATTTAAAACAAGGAAGATAATCGATGTATGATGTATT
* *
36408887 TCTACAAAATTATGATTATATTGCTTAGATCTGAGAACGTGTCATGTATTGGATAGTTGGACAAT
261 TCTACAAAATTATGATTATATCGCTTAGATCTGAGAACGTGTCATGTGTTGGATAGTTGGACAAT
* *
36408952 TATTATTCC
326 TGTTGTTCC
* *
36408961 CATTATTGATTCTGGTTCTTTGAGTAAAGTGAAAAAAGTTATGGGTGATTCAATATAG-TAATTC
1 CATTATTGATTCTGGTTCTTTGAGGAAAGTGAAAAAAGTTATGGGTGATTCAATGTAGTTAATTC
* * *
36409025 AAATATGTCTTTCTCTATATGTCATACTTTGCCTGAAA-AATGATTATGTCTATCAAATATAA-A
66 AAATATGTCTTTCTCTATATGTCATACTTTGTCTGAAATAACGATTATGTCTATCAAATCTAAGA
* * * * *
36409088 ACGTGCCATTTGTTTGATATAGATACGACTATATCCTTCACATTAATTTTAATTTAGTTGGCGAC
131 ACGTGCCATTCGTTTGATATAGATACGACCATATCCTTCACATTAATTTTAATTCAATTGGGGAC
*
36409153 AAATCCTCTCCCTCTTCTCTAAAGGATGATTTAAAACAAGGA
196 AAATTCTCTCCCTCTTCTCTAAAGGATGATTTAAAACAAGGA
36409195 TGAGAAAAAT
Statistics
Matches: 1372, Mismatches: 169, Indels: 51
0.86 0.11 0.03
Matches are distributed among these distances:
322 88 0.06
327 1 0.00
329 1 0.00
331 97 0.07
332 23 0.02
333 261 0.19
334 501 0.37
335 370 0.27
336 27 0.02
337 3 0.00
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (334 bp):
CATTATTGATTCTGGTTCTTTGAGGAAAGTGAAAAAAGTTATGGGTGATTCAATGTAGTTAATTC
AAATATGTCTTTCTCTATATGTCATACTTTGTCTGAAATAACGATTATGTCTATCAAATCTAAGA
ACGTGCCATTCGTTTGATATAGATACGACCATATCCTTCACATTAATTTTAATTCAATTGGGGAC
AAATTCTCTCCCTCTTCTCTAAAGGATGATTTAAAACAAGGAAGATAATCGATGTATGATGTATT
TCTACAAAATTATGATTATATCGCTTAGATCTGAGAACGTGTCATGTGTTGGATAGTTGGACAAT
TGTTGTTCC
Found at i:36414641 original size:336 final size:334
Alignment explanation
Indices: 36414025--36414674 Score: 876
Period size: 336 Copynumber: 1.9 Consensus size: 334
36414015 TTCTAACAAA
* * *
36414025 GGAAAATAATCGATGTATGATGTATTTCTTCAAAATTATGATTATACCGCGTAGACCTAAGAACG
1 GGAAAATAATCGATGTATGATGTATTTCTACAAAATTATAATTATACCGCGTAGACCTAAGAACA
* * * * * **
36414090 TGTCATGTGTTGGATAGCTGGACAATTGTTGTTCCTATTATTGATTCTAGTTCTTTGAGGAAAGT
66 TGTCATGTGTTGGATAGCTGGACAATTGATGTTCCCATTAGTAATTCTAGTTCTTGGAAAAAAGT
* * *
36414155 GAAAAAAGTTATGGGTGATTCAATGTAGTTATTTCAAATCTTTCTTTCTCTATATGTCATACTTT
131 AAAAAAAGTTATGGGTGATTCAATGTAGTTAATTCAAATCTTTCTTTCTCTATATATCATACTTT
* * * * * * * *
36414220 GTTTGAAATAGCTATTATGTCTTTCAGATCTAGGAACTTGCCATTCGTCTGATATAGAAACGACC
196 GTCTGAAATAGATAGTATATCTTTCAGATCTAAGAACGTGCCATCCGTCTAATATAGAAACGACC
36414285 GTAACCTTCAGCTTAATTTTAATTCAATTGGGAACAGATTCTCTCCCTCTTCTCCAAAGGGTGAT
261 GTAACCTTCAGCTTAATTTTAATTCAATTGGGAACAGATTCTCTCCCTCTTCTCCAAAGGGTGAT
36414350 TTAAAACAG
326 TTAAAACAG
* * * ** * *
36414359 GGAAGATAATCGGTGTATGATGTATTTGTACAAAATT-TCAATTATATTGCTTAGATCTAAGAAC
1 GGAAAATAATCGATGTATGATGTATTTCTACAAAATTAT-AATTATACCGCGTAGACCTAAGAAC
*
36414423 ATTTCATGTGTTGGATAG-TGGGACAATTGATGTTCCCATTAGTAATTCTAGTTCTGTGGAAAAA
65 ATGTCATGTGTTGGATAGCT-GGACAATTGATGTTCCCATTAGTAATTCTAGTTCT-TGGAAAAA
* *
36414487 AGTTAAAAAAAGTTATGGGTGATTCGATGTTGTTAATTCAAATCTTTCTTTCTCTATATATCATA
128 AG-TAAAAAAAGTTATGGGTGATTCAATGTAGTTAATTCAAATCTTTCTTTCTCTATATATCATA
* *
36414552 CTTTGTCTGAAATA-ATGAGTATATCTTTCAGATCTAAGAACGTGTCATCCGT-TCAATATAGAT
192 CTTTGTCTGAAATAGAT-AGTATATCTTTCAGATCTAAGAACGTGCCATCCGTCT-AATATAGAA
* * * * *
36414615 ATGATCGTAACGTTCAGCTTAATTTTAATTCAATTGGGGATAGATTCTCTCCCTCTTCTC
255 ACGACCGTAACCTTCAGCTTAATTTTAATTCAATTGGGAACAGATTCTCTCCCTCTTCTC
36414675 TTAAGGGAAA
Statistics
Matches: 272, Mismatches: 38, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
333 2 0.01
334 100 0.37
335 9 0.03
336 161 0.59
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.38
Consensus pattern (334 bp):
GGAAAATAATCGATGTATGATGTATTTCTACAAAATTATAATTATACCGCGTAGACCTAAGAACA
TGTCATGTGTTGGATAGCTGGACAATTGATGTTCCCATTAGTAATTCTAGTTCTTGGAAAAAAGT
AAAAAAAGTTATGGGTGATTCAATGTAGTTAATTCAAATCTTTCTTTCTCTATATATCATACTTT
GTCTGAAATAGATAGTATATCTTTCAGATCTAAGAACGTGCCATCCGTCTAATATAGAAACGACC
GTAACCTTCAGCTTAATTTTAATTCAATTGGGAACAGATTCTCTCCCTCTTCTCCAAAGGGTGAT
TTAAAACAG
Found at i:36416326 original size:16 final size:16
Alignment explanation
Indices: 36416305--36416337 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
36416295 TCCTTAATCT
36416305 TACCATTTAATCTTGG
1 TACCATTTAATCTTGG
36416321 TACCATTTAATCTTGG
1 TACCATTTAATCTTGG
36416337 T
1 T
36416338 TCATTTGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.45
Consensus pattern (16 bp):
TACCATTTAATCTTGG
Done.