Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 117 of 198
Found at i:37381935 original size:2 final size:2
Alignment explanation
Indices: 37381928--37381965 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
37381918 TTTCACGCTA
37381928 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37381966 GCTGAAAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37383040 original size:19 final size:19
Alignment explanation
Indices: 37383016--37383063 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
37383006 ACTGTTATAA
37383016 AATAAAGAAAGATGAAAAG-
1 AATAAAGAAAGATG-AAAGC
*
37383035 AATAAAGAAAATATGAAAGC
1 AATAAAG-AAAGATGAAAGC
37383055 AATAAAGAA
1 AATAAAGAA
37383064 TGTACTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.69, C:0.02, G:0.17, T:0.12
Consensus pattern (19 bp):
AATAAAGAAAGATGAAAGC
Found at i:37383052 original size:20 final size:20
Alignment explanation
Indices: 37383016--37383063 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
37383006 ACTGTTATAA
37383016 AATAAAG-AAAGATGAAAAG-
1 AATAAAGAAAAGATG-AAAGC
*
37383035 AATAAAGAAAATATGAAAGC
1 AATAAAGAAAAGATGAAAGC
37383055 AATAAAGAA
1 AATAAAGAA
37383064 TGTACTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.69, C:0.02, G:0.17, T:0.12
Consensus pattern (20 bp):
AATAAAGAAAAGATGAAAGC
Found at i:37395176 original size:9 final size:10
Alignment explanation
Indices: 37395162--37395201 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
37395152 ATTATTTTTT
37395162 AAAATT-TAA
1 AAAATTATAA
*
37395171 AAAATTATTA
1 AAAATTATAA
37395181 AAAATT-T-A
1 AAAATTATAA
37395189 AAAATTATAA
1 AAAATTATAA
37395199 AAA
1 AAA
37395202 GAGTATTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
8 7 0.26
9 8 0.30
10 12 0.44
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAATTATAA
Found at i:37395201 original size:18 final size:19
Alignment explanation
Indices: 37395162--37395201 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
37395152 ATTATTTTTT
*
37395162 AAAATTTAAAAAATTATTA
1 AAAATTTAAAAAATTATAA
37395181 AAAATTT-AAAAATTATAA
1 AAAATTTAAAAAATTATAA
37395199 AAA
1 AAA
37395202 GAGTATTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATTTAAAAAATTATAA
Found at i:37411951 original size:25 final size:25
Alignment explanation
Indices: 37411874--37411956 Score: 64
Period size: 25 Copynumber: 3.3 Consensus size: 25
37411864 ACTTCGTGAC
* *
37411874 AAAGGCATTTCACAAGATTAGTCAT
1 AAAGGCTTTTCACAAGATTAGCCAT
* * *
37411899 AAAGGC--TTC-CCAGCTTATACGCCTT
1 AAAGGCTTTTCACAAG-AT-TA-GCCAT
37411924 AAAGGCTTTTCACAAGATTAGCCAT
1 AAAGGCTTTTCACAAGATTAGCCAT
*
37411949 AAAAGCTT
1 AAAGGCTT
37411957 CTAAGATAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 12
0.69 0.12 0.19
Matches are distributed among these distances:
22 3 0.07
23 4 0.09
24 2 0.05
25 26 0.59
26 2 0.05
27 4 0.09
28 3 0.07
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.28
Consensus pattern (25 bp):
AAAGGCTTTTCACAAGATTAGCCAT
Found at i:37411977 original size:25 final size:25
Alignment explanation
Indices: 37411944--37412001 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
37411934 CACAAGATTA
* *
37411944 GCCATAAAAGCTT-CTAAGATAATAT
1 GCCACAAAAGCTTCCT-AGATAATAC
*
37411969 TCCACAAAAGCTTCCTAGATAATAC
1 GCCACAAAAGCTTCCTAGATAATAC
37411994 GCCACAAA
1 GCCACAAA
37412002 CACTTTTCAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 26 0.93
26 2 0.07
ACGTcount: A:0.43, C:0.24, G:0.10, T:0.22
Consensus pattern (25 bp):
GCCACAAAAGCTTCCTAGATAATAC
Found at i:37414033 original size:59 final size:59
Alignment explanation
Indices: 37413966--37414085 Score: 213
Period size: 59 Copynumber: 2.0 Consensus size: 59
37413956 AAAGCTACCA
37413966 ATAATGCGATAGAATTACCAATCTCCTCAATACTCCCAATGTAGTGCACTAATAATAAT
1 ATAATGCGATAGAATTACCAATCTCCTCAATACTCCCAATGTAGTGCACTAATAATAAT
* **
37414025 ATAATGCGATAGAATTGCCAATCTCCTTGATACTCCCAATGTAGTGCACTAATAATAAT
1 ATAATGCGATAGAATTACCAATCTCCTCAATACTCCCAATGTAGTGCACTAATAATAAT
37414084 AT
1 AT
37414086 TGTGGATTTT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.30
Consensus pattern (59 bp):
ATAATGCGATAGAATTACCAATCTCCTCAATACTCCCAATGTAGTGCACTAATAATAAT
Found at i:37432617 original size:36 final size:36
Alignment explanation
Indices: 37432577--37432706 Score: 161
Period size: 36 Copynumber: 3.6 Consensus size: 36
37432567 TGGGCACACG
* *
37432577 CAAGATACGATAGTTCGCTGGACCTATCTCATGATT
1 CAAGATACGACAGTCCGCTGGACCTATCTCATGATT
* * *
37432613 CAAGATACGACAATCCGCAGGACCTACCTCATGATT
1 CAAGATACGACAGTCCGCTGGACCTATCTCATGATT
* * *
37432649 CAAGATACAACAGTCCGCTGGACCTATCTTATGATA
1 CAAGATACGACAGTCCGCTGGACCTATCTCATGATT
* * *
37432685 CATGTTACGACAGTTCGCTGGA
1 CAAGATACGACAGTCCGCTGGA
37432707 TTTGTTCTCT
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 79 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (36 bp):
CAAGATACGACAGTCCGCTGGACCTATCTCATGATT
Found at i:37436896 original size:24 final size:24
Alignment explanation
Indices: 37436867--37436930 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 24
37436857 CTGATTATAA
*
37436867 AATTAAAATACT-AAATTATATTAG
1 AATTAAAATA-TAAAATTAAATTAG
*
37436891 AATTAAAATATAAAATTAAATTCG
1 AATTAAAATATAAAATTAAATTAG
*
37436915 AATTTTAAATATAAAA
1 AA-TTAAAATATAAAA
37436931 ACTAAAATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
23 1 0.03
24 22 0.63
25 12 0.34
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (24 bp):
AATTAAAATATAAAATTAAATTAG
Found at i:37440967 original size:85 final size:86
Alignment explanation
Indices: 37440782--37440977 Score: 277
Period size: 85 Copynumber: 2.3 Consensus size: 86
37440772 AATAAATGCC
* * * *
37440782 GCTATAGACCATGACCTTTAACGGCATTTTTCCCACAAACACCGCTAAAGATCATGACCTTTAGC
1 GCTAAAGACCATGACCTTTAGCGGCATTTTTCCCACAAACACCGATAAAGACCATGACCTTTAGC
* * *
37440847 GGCGCTTTTCCCACAAATGCC
66 AGCGCTTTTCCCACAAACGCA
* * *
37440868 GCTATAGACCATGACCTTTAGCGGCATTTTT-CCACAAACGCCGATATAGACCATGACCTTTAGC
1 GCTAAAGACCATGACCTTTAGCGGCATTTTTCCCACAAACACCGATAAAGACCATGACCTTTAGC
37440932 AGCGCTTTTCCCACAAACGCA
66 AGCGCTTTTCCCACAAACGCA
* *
37440953 GCTAAAGGCTATGACCTTTAGCGGC
1 GCTAAAGACCATGACCTTTAGCGGC
37440978 GCTTTTGTCA
Statistics
Matches: 99, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
85 69 0.70
86 30 0.30
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (86 bp):
GCTAAAGACCATGACCTTTAGCGGCATTTTTCCCACAAACACCGATAAAGACCATGACCTTTAGC
AGCGCTTTTCCCACAAACGCA
Found at i:37441000 original size:43 final size:43
Alignment explanation
Indices: 37440779--37441013 Score: 265
Period size: 43 Copynumber: 5.5 Consensus size: 43
37440769 AGAAATAAAT
* * **
37440779 GCCGCTATAGACCATGACCTTTAACGGCATTTTTCCCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
37440822 ACCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCACAAAT
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
37440865 GCCGCTATAGACCATGACCTTTAGCGGC-ATTTTTCCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
37440907 GCCGATATAGACCATGACCTTTAGCAGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * ** * *
37440950 GCAGCTAAAGGCTATGACCTTTAGCGGCGCTTTTGTCAGAAAT
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
37440993 GTCGCTAAAGACCATTACCTT
1 GCCGCTAAAGACCATGACCTT
37441014 CAGTAACGCT
Statistics
Matches: 159, Mismatches: 32, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
42 37 0.23
43 122 0.77
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.26
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:37441013 original size:128 final size:128
Alignment explanation
Indices: 37440779--37441013 Score: 328
Period size: 128 Copynumber: 1.8 Consensus size: 128
37440769 AGAAATAAAT
* * * *
37440779 GCCGCTATAGACCATGACCTTTAACGGCATTTTTCCCACAAACACCGCTAAAGATCATGACCTTT
1 GCCGATATAGACCATGACCTTTAACAGCACTTTTCCCACAAACACAGCTAAAGATCATGACCTTT
*
37440844 AGCGGCGCTTTTCCCACAAATGCCGCTATAGACCATGACCTTTAGCGGCATTTTTCCACAAAC
66 AGCGGCGCTTTTCCCACAAATGCCGCTAAAGACCATGACCTTTAGCGGCATTTTTCCACAAAC
* * * *
37440907 GCCGATATAGACCATGACCTTTAGCAGCGCTTTTCCCACAAACGCAGCTAAAG-GCTATGACCTT
1 GCCGATATAGACCATGACCTTTAACAGCACTTTTCCCACAAACACAGCTAAAGATC-ATGACCTT
** * * *
37440971 TAGCGGCGCTTTTGTCAGAAATGTCGCTAAAGACCATTACCTT
65 TAGCGGCGCTTTTCCCACAAATGCCGCTAAAGACCATGACCTT
37441014 CAGTAACGCT
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
127 1 0.01
128 91 0.99
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.26
Consensus pattern (128 bp):
GCCGATATAGACCATGACCTTTAACAGCACTTTTCCCACAAACACAGCTAAAGATCATGACCTTT
AGCGGCGCTTTTCCCACAAATGCCGCTAAAGACCATGACCTTTAGCGGCATTTTTCCACAAAC
Found at i:37442721 original size:39 final size:39
Alignment explanation
Indices: 37442667--37442746 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
37442657 GTATAATGTG
37442667 CATAGTCAACACAGTTAGCAGTTTAACTTTTATGATTTC
1 CATAGTCAACACAGTTAGCAGTTTAACTTTTATGATTTC
37442706 CATAGTCAACACAGTTAGCAGTTTAACTTTTATGATTTC
1 CATAGTCAACACAGTTAGCAGTTTAACTTTTATGATTTC
37442745 CA
1 CA
37442747 AACACATTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (39 bp):
CATAGTCAACACAGTTAGCAGTTTAACTTTTATGATTTC
Found at i:37444985 original size:3 final size:3
Alignment explanation
Indices: 37444977--37445012 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
37444967 AAGATATAAA
37444977 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
37445013 GAGGCGATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:37446159 original size:57 final size:57
Alignment explanation
Indices: 37446049--37446176 Score: 134
Period size: 57 Copynumber: 2.2 Consensus size: 57
37446039 CTAATTAATC
* ** * *
37446049 TAAACCCTAAACCCCTAACCCCTATTCTCTAAACCTTAAACTCTAAAACATAAATAA
1 TAAACCCTAAACCCCTAACACCTAACCTCTAAACCCTAAACCCTAAAACATAAATAA
* * *
37446106 TAAACCCTAAACCCCTAACACTTAACCTCT-AACTCCT-AACCCTTAAACTATAAATCA
1 TAAACCCTAAACCCCTAACACCTAACCTCTAAAC-CCTAAACCCTAAAAC-ATAAATAA
* *
37446163 TAATCTCTAAACCC
1 TAAACCCTAAACCC
37446177 ATAATCCATA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
56 12 0.20
57 47 0.80
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.25
Consensus pattern (57 bp):
TAAACCCTAAACCCCTAACACCTAACCTCTAAACCCTAAACCCTAAAACATAAATAA
Found at i:37446644 original size:41 final size:40
Alignment explanation
Indices: 37446594--37446718 Score: 169
Period size: 41 Copynumber: 3.0 Consensus size: 40
37446584 GCCAAATATA
* ** *
37446594 GAGCATTAGCGGTGCTTATTGGAAAACGCCGCTAAAGCCCT
1 GAGCATTAGCGGCGCTT-TTAAAAAACGCCGCTAAAGCCCC
*
37446635 GAGCATTAGCGGCGCTTCTTAAAAAACGCCGCTAAAACCCC
1 GAGCATTAGCGGCGCTT-TTAAAAAACGCCGCTAAAGCCCC
*
37446676 GAGCATTAGTGGCGCTTTTCAAAAAACGCCGCTAAAGCCCC
1 GAGCATTAGCGGCGCTTTT-AAAAAACGCCGCTAAAGCCCC
37446717 GA
1 GA
37446719 AAGCTCAGAA
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
40 2 0.03
41 73 0.97
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.19
Consensus pattern (40 bp):
GAGCATTAGCGGCGCTTTTAAAAAACGCCGCTAAAGCCCC
Found at i:37449477 original size:30 final size:30
Alignment explanation
Indices: 37449441--37449498 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
37449431 TTGTTGACTG
37449441 ATATGAAATGA-TACAGGGTATGAATATAAA
1 ATATG-AATGATTACAGGGTATGAATATAAA
* *
37449471 ATATGAATGATTATAGGGTATGATTATA
1 ATATGAATGATTACAGGGTATGAATATA
37449499 TGGAAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.45, C:0.02, G:0.21, T:0.33
Consensus pattern (30 bp):
ATATGAATGATTACAGGGTATGAATATAAA
Found at i:37450035 original size:57 final size:57
Alignment explanation
Indices: 37449962--37450144 Score: 258
Period size: 57 Copynumber: 3.2 Consensus size: 57
37449952 AACCAATTTG
* * *
37449962 ATATAACATTAAAATGAATTATGTGAAATTAGTATGATCTTATAGATTGATAATAGA
1 ATATGACATTGAAATGAATTATGTGAAATTTGTATGATCTTATAGATTGATAATAGA
* * *
37450019 ATACGACATTGAAATGAATCATGTGAAATTTGTATGATCCTATAGATTGATAATAGA
1 ATATGACATTGAAATGAATTATGTGAAATTTGTATGATCTTATAGATTGATAATAGA
* * * * *
37450076 ATGTGACATTGAAATGAATTATGTGAAATTTGTATGATATTATGGATTGATGATGGA
1 ATATGACATTGAAATGAATTATGTGAAATTTGTATGATCTTATAGATTGATAATAGA
*
37450133 ATATGAAATTGA
1 ATATGACATTGA
37450145 GGTGAGTTGT
Statistics
Matches: 110, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 110 1.00
ACGTcount: A:0.41, C:0.04, G:0.19, T:0.36
Consensus pattern (57 bp):
ATATGACATTGAAATGAATTATGTGAAATTTGTATGATCTTATAGATTGATAATAGA
Found at i:37463747 original size:29 final size:29
Alignment explanation
Indices: 37463704--37463860 Score: 147
Period size: 29 Copynumber: 5.4 Consensus size: 29
37463694 TCTCACCATG
*
37463704 AAGACGTCCTTTTAATAGAGATAGCCACA
1 AAGACATCCTTTTAATAGAGATAGCCACA
* * * * *
37463733 AATACATCCTCTTAACAAAGATAGTCACA
1 AAGACATCCTTTTAATAGAGATAGCCACA
*
37463762 AAGACTTCCTTTTAATAGAGATAGCCACA
1 AAGACATCCTTTTAATAGAGATAGCCACA
* * *
37463791 AAGGCATACATTTAACTA-AGATAGCCACA
1 AAGACATCCTTTTAA-TAGAGATAGCCACA
* * *
37463820 AAGGCATCCTTTTAACAAAGATCA-CCACA
1 AAGACATCCTTTTAATAGAGAT-AGCCACA
* *
37463849 AAGGCTTCCTTT
1 AAGACATCCTTT
37463861 CAGAGATTAC
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
28 1 0.01
29 101 0.96
30 3 0.03
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.25
Consensus pattern (29 bp):
AAGACATCCTTTTAATAGAGATAGCCACA
Found at i:37463773 original size:58 final size:58
Alignment explanation
Indices: 37463704--37463851 Score: 174
Period size: 58 Copynumber: 2.6 Consensus size: 58
37463694 TCTCACCATG
* * * *
37463704 AAGACGTCCTTTTAATAGAGATAGCCACAAATACAT-CCTCTTAACAAAGATAGTCACA
1 AAGACATCCTTTTAATAGAGATAGCCACAAAGACATACAT-TTAACAAAGATAGCCACA
* * *
37463762 AAGACTTCCTTTTAATAGAGATAGCCACAAAGGCATACATTTAACTAAGATAGCCACA
1 AAGACATCCTTTTAATAGAGATAGCCACAAAGACATACATTTAACAAAGATAGCCACA
* * *
37463820 AAGGCATCCTTTTAACAAAGATCA-CCACAAAG
1 AAGACATCCTTTTAATAGAGAT-AGCCACAAAG
37463852 GCTTCCTTTC
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
58 75 0.96
59 3 0.04
ACGTcount: A:0.42, C:0.22, G:0.13, T:0.23
Consensus pattern (58 bp):
AAGACATCCTTTTAATAGAGATAGCCACAAAGACATACATTTAACAAAGATAGCCACA
Found at i:37463874 original size:26 final size:28
Alignment explanation
Indices: 37463815--37463909 Score: 88
Period size: 29 Copynumber: 3.4 Consensus size: 28
37463805 ACTAAGATAG
* * * *
37463815 CCACAAAGGCATCCTTTTAACAAAGATCA
1 CCACAAAGGCTTCCGTTT-ACAGAGATTA
37463844 CCACAAAGGCTTCC-TTT-CAGAGATTA
1 CCACAAAGGCTTCCGTTTACAGAGATTA
* *
37463870 CCACAAAAGCTTCCGTATTATAGAGA-TA
1 CCACAAAGGCTTCCGT-TTACAGAGATTA
37463898 GCCACAAAGGCT
1 -CCACAAAGGCT
37463910 CACTTATACA
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
26 20 0.36
27 1 0.02
28 7 0.12
29 28 0.50
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.22
Consensus pattern (28 bp):
CCACAAAGGCTTCCGTTTACAGAGATTA
Found at i:37465818 original size:51 final size:51
Alignment explanation
Indices: 37465763--37465947 Score: 200
Period size: 51 Copynumber: 3.6 Consensus size: 51
37465753 GGTTCACATC
* * * *
37465763 GTAGCCTGTACATAGTATTACACATGTGACCATTAGCATTCGATACCCGTA
1 GTAGCCTGCACATAGTACTACACATGTGACCATTAACATTCGATACACGTA
* * * *
37465814 GTAGCCTGCACATAGTACTACACATGTG---ATTGAAACTATCCGGTACGCATA
1 GTAGCCTGCACATAGTACTACACATGTGACCATT--AAC-ATTCGATACACGTA
* * *
37465865 GTAGCTTGCACATAGTACTACACATGCGACC--TATCATTTCGATACACGTA
1 GTAGCCTGCACATAGTACTACACATGTGACCATTAACA-TTCGATACACGTA
37465915 GTAGCCTGCACATAGTACTACACATGTGACCAT
1 GTAGCCTGCACATAGTACTACACATGTGACCAT
37465948 CACCTTCACT
Statistics
Matches: 109, Mismatches: 16, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
48 3 0.03
49 1 0.01
50 42 0.39
51 62 0.57
52 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (51 bp):
GTAGCCTGCACATAGTACTACACATGTGACCATTAACATTCGATACACGTA
Found at i:37465967 original size:101 final size:99
Alignment explanation
Indices: 37465758--37465943 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 99
37465748 TGTTTGGTTC
* * * * *
37465758 ACATCGTAGCCTGTACATAGTATTACACATGTGACCATTAGCATTCGATACCCGTAGTAGCCTGC
1 ACATAGTAGCCTGCACATAGTACTACACATGCGACCA-TAGCATTCGATACACGTAGTAGCCTGC
*
37465823 ACATAGTACTACACATGTGATTGAAACTATCCGGT
65 ACATAGTACTACACATGTGAATGAAACTATCCGGT
* *
37465858 ACGCATAGTAGCTTGCACATAGTACTACACATGCGACC-TATCATTTCGATACACGTAGTAGCCT
1 A--CATAGTAGCCTGCACATAGTACTACACATGCGACCATAGCA-TTCGATACACGTAGTAGCCT
37465922 GCACATAGTACTACACATGTGA
63 GCACATAGTACTACACATGTGA
37465944 CCATCACCTT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
100 5 0.07
101 41 0.54
102 30 0.39
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (99 bp):
ACATAGTAGCCTGCACATAGTACTACACATGCGACCATAGCATTCGATACACGTAGTAGCCTGCA
CATAGTACTACACATGTGAATGAAACTATCCGGT
Found at i:37468669 original size:51 final size:51
Alignment explanation
Indices: 37468609--37468901 Score: 249
Period size: 51 Copynumber: 5.8 Consensus size: 51
37468599 TATCGATGAA
*
37468609 CACATGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGT
* * * * * **
37468660 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGAG-
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATG-GT
* * ** * *
37468711 CACGTGTGTAGTACTGTGTGAAATCTACTATGTGTATCGGTAAACT-ATGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TAATGGT
* * * * * *
37468762 TACATGTGTAGTACTAAGTGAAGGCTACTATG-GATACCG-GAAATATTTGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTG-TATCGATAAATA-ATGGT
* * * * * *
37468813 CACGTATGTAGCACTATGTGAAGGCTACTACGTG-AACTG-TAAA-ACTGAT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GATAAATAATGGT
*
37468862 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
37468902 ATGATAAAAA
Statistics
Matches: 192, Mismatches: 40, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
49 37 0.19
50 10 0.05
51 142 0.74
52 3 0.02
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (51 bp):
CACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGT
Found at i:37468789 original size:102 final size:101
Alignment explanation
Indices: 37468613--37468897 Score: 346
Period size: 102 Copynumber: 2.8 Consensus size: 101
37468603 GATGAACACA
*
37468613 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTACTAAG
1 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAAT-ATGGTCACATGTGTAGTACTAAG
*
37468678 TGAAGGCTACTATGTGTACCGAGAAGT-TTTGAG-CACG
65 TGAAGGCTACTATGTGTACCG-GAAATATTTG-GTCACG
** * *
37468715 TGTGTAGTACTGTGTGAAATCTACTATGTGTATCGGTAAACTATGGTTACATGTGTAGTACTAAG
1 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAA-TATGGTCACATGTGTAGTACTAAG
37468780 TGAAGGCTACTATG-GATACCGGAAATATTTGGTCACG
65 TGAAGGCTACTATGTG-TACCGGAAATATTTGGTCACG
* * * * * * * *
37468817 TATGTAGCACTATGTGAAGGCTACTACGTG-AACTGTAAA-ACTGATCACGTGTGTAGTACTATG
1 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAATA-TGGTCACATGTGTAGTACTAAG
*
37468880 TGAAGGCTACTACGTGTA
65 TGAAGGCTACTATGTGTA
37468898 TCGAATGATA
Statistics
Matches: 158, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
99 1 0.01
100 33 0.21
101 14 0.09
102 109 0.69
103 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (101 bp):
TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAATATGGTCACATGTGTAGTACTAAGT
GAAGGCTACTATGTGTACCGGAAATATTTGGTCACG
Found at i:37474331 original size:51 final size:50
Alignment explanation
Indices: 37474273--37474446 Score: 217
Period size: 51 Copynumber: 3.4 Consensus size: 50
37474263 ATCGTACCTA
* **
37474273 GCACATAGTACTACACATGTGATCATTAGCATTCAATACACGTAGTAGCCT
1 GCACATAGTACTACACATGTGATCA-TAACATTCGGTACACGTAGTAGCCT
* * *
37474324 GCACATAGTACTACACACGTGATCGA-AACTATCCGGTACGCGTAGTAGCCT
1 GCACATAGTACTACACATGTGATC-ATAAC-ATTCGGTACACGTAGTAGCCT
* * *
37474375 GCACATAGTACTACACATGCGA-CCTATCATTCTGGTACACGTAGTAGCCT
1 GCACATAGTACTACACATGTGATCATAACATTC-GGTACACGTAGTAGCCT
37474425 GCACATAGTACTACACATGTGA
1 GCACATAGTACTACACATGTGA
37474447 CCATCACTTT
Statistics
Matches: 106, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
49 3 0.03
50 42 0.40
51 60 0.57
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
GCACATAGTACTACACATGTGATCATAACATTCGGTACACGTAGTAGCCT
Found at i:37496309 original size:16 final size:15
Alignment explanation
Indices: 37496278--37496317 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
37496268 TCCTGCATTA
37496278 ATAATTTTTT-TCAT
1 ATAATTTTTTGTCAT
37496292 ATAATTTTTTGT-AT
1 ATAATTTTTTGTCAT
37496306 ATATATTTTTTG
1 ATA-ATTTTTTG
37496318 CCTTTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 15 0.62
15 9 0.38
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (15 bp):
ATAATTTTTTGTCAT
Found at i:37501326 original size:11 final size:11
Alignment explanation
Indices: 37501289--37501329 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
37501279 ACTTACTAAT
37501289 TTTTCACA-CA
1 TTTTCACATCA
37501299 TTTTCAC-TGCA
1 TTTTCACAT-CA
*
37501310 TATTCACATCA
1 TTTTCACATCA
37501321 TTTTCACAT
1 TTTTCACAT
37501330 TATAATCACT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 7 0.27
11 18 0.69
12 1 0.04
ACGTcount: A:0.27, C:0.27, G:0.02, T:0.44
Consensus pattern (11 bp):
TTTTCACATCA
Found at i:37514745 original size:49 final size:48
Alignment explanation
Indices: 37514684--37514790 Score: 153
Period size: 49 Copynumber: 2.2 Consensus size: 48
37514674 AACATGCTCA
* *
37514684 CACACTTGTCTTATCAGAATGGCT-GAGAAACATAAAATATTTTCTCACC
1 CACACTTATCTTATCAGAATGG-TAGAGAAACATAAAA-ATGTTCTCACC
* *
37514733 CACACTTATCTTATCAGAATGGTAGAGGAACATAAAAATGTTCTCGCC
1 CACACTTATCTTATCAGAATGGTAGAGAAACATAAAAATGTTCTCACC
37514781 CACACTTATC
1 CACACTTATC
37514791 AGAATCTTGT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
48 20 0.38
49 33 0.62
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (48 bp):
CACACTTATCTTATCAGAATGGTAGAGAAACATAAAAATGTTCTCACC
Found at i:37515253 original size:13 final size:13
Alignment explanation
Indices: 37515210--37515255 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
37515200 GCGCTCACAT
37515210 AAAACATATCTTG
1 AAAACATATCTTG
* * *
37515223 AAAGTCATAACTTA
1 AAA-ACATATCTTG
37515237 AAAACATATCTTG
1 AAAACATATCTTG
37515250 AAAACA
1 AAAACA
37515256 GAGGTTTGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
13 16 0.62
14 10 0.38
ACGTcount: A:0.52, C:0.15, G:0.07, T:0.26
Consensus pattern (13 bp):
AAAACATATCTTG
Found at i:37530603 original size:217 final size:217
Alignment explanation
Indices: 37530217--37530976 Score: 1119
Period size: 217 Copynumber: 3.5 Consensus size: 217
37530207 CACAGTAATG
* * * * ***
37530217 TCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAAAGAGATAAGATCTGTGATTTT
1 TCAGAGAGACAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGATTTT
* * * * * *
37530282 AATCCGCTCCACTGCAACTTCAAGGAGATAAGATTATTGGCCTTAACTTGCTCCACTGTAACTTC
66 AATCCGCTCCACTACAACTTTAGGGAGATAAGATTATTGGCTTTAACCTGCTCCACTGCAACTTC
* * *
37530347 AGGGAGATAAGGTTTGCCGTCTTCAGCCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTA
131 AGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTA
* *
37530412 CTTAGTATGCTCCATTGCAACT
196 CTTAGTCTGCTCCACTGCAACT
* * *
37530434 TCAGAGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCCAAGATTTC
1 TCAGAGAGACAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGATTTT
* * * *
37530499 AATTCGCACCACTACAACTTTAGGTAGATAGGATTATTGGCTTTAACCTGCTCCACTGCAACTTC
66 AATCCGCTCCACTACAACTTTAGGGAGATAAGATTATTGGCTTTAACCTGCTCCACTGCAACTTC
*
37530564 AGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTACTTA
131 AGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTA
37530629 CTTAGTCTGCTCCACTGCAACT
196 CTTAGTCTGCTCCACTGCAACT
* *
37530651 TCA-AGGAGACAAGACTAGATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGAACCAAGATTT
1 TCAGA-GAGACAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGATTT
*
37530715 TAATCCGCTCCACTACAACTTTAGGGAGATAAGATTATTGGCTTTAACCTGCTCCATTGCAACTT
65 TAATCCGCTCCACTACAACTTTAGGGAGATAAGATTATTGGCTTTAACCTGCTCCACTGCAACTT
* * * * *
37530780 CAGGGAGATAAGGTTTGCCATCTTCAGTCTACCTCATTGCAACTTCAGAAAGATAGGACTTGCTT
130 CAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTT
37530845 ACTTAGTCTGCTCCACTGCAACT
195 ACTTAGTCTGCTCCACTGCAACT
* **
37530868 TCAGGGAGACAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTAG-TTT
1 TCAGAGAGACAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATC-CAAGATTT
* * * *
37530932 TAATCCGCTCCACTGCAACTTCAGGGAGATAGGATCATTGGCTTT
65 TAATCCGCTCCACTACAACTTTAGGGAGATAAGATTATTGGCTTT
37530977 CGATCTGTTC
Statistics
Matches: 491, Mismatches: 49, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
216 1 0.00
217 488 0.99
218 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (217 bp):
TCAGAGAGACAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGATTTT
AATCCGCTCCACTACAACTTTAGGGAGATAAGATTATTGGCTTTAACCTGCTCCACTGCAACTTC
AGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTA
CTTAGTCTGCTCCACTGCAACT
Found at i:37530651 original size:44 final size:45
Alignment explanation
Indices: 37530546--37530666 Score: 126
Period size: 45 Copynumber: 2.7 Consensus size: 45
37530536 TGGCTTTAAC
** *
37530546 CTGCTCCACTGCAACTTCAGG-GAGATAAGGTTTGCCATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGAG-GATAAGACTTACCATCTTCAGT
*
37530591 CTGC-CTCACTGCAACTTCAGGAGGATAAGACTTA-CTTACTT-AGT
1 CTGCTC-CACTGCAACTTCAGGAGGATAAGACTTACCAT-CTTCAGT
*
37530635 CTGCTCCACTGCAACTTCAAGGA-GACAAGACT
1 CTGCTCCACTGCAACTTC-AGGAGGATAAGACT
37530667 AGATGCGATC
Statistics
Matches: 66, Mismatches: 5, Indels: 11
0.80 0.06 0.13
Matches are distributed among these distances:
44 30 0.45
45 35 0.53
46 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (45 bp):
CTGCTCCACTGCAACTTCAGGAGGATAAGACTTACCATCTTCAGT
Found at i:37544079 original size:34 final size:34
Alignment explanation
Indices: 37544041--37544110 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
37544031 GTATTTCTTG
*
37544041 ATTGGTACGGGCCGGGTACCAATTGGGTATTACA
1 ATTGGTACGGGCCGGGTACAAATTGGGTATTACA
37544075 ATTGGTACGGGCCGGGTACAAATTGGGTATTACA
1 ATTGGTACGGGCCGGGTACAAATTGGGTATTACA
37544109 AT
1 AT
37544111 AACATTTGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (34 bp):
ATTGGTACGGGCCGGGTACAAATTGGGTATTACA
Found at i:37545298 original size:20 final size:20
Alignment explanation
Indices: 37545273--37545329 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
37545263 GTGTAAACAA
*
37545273 GGGCACGTATGTGCAATCAG
1 GGGCACGTATGTACAATCAG
* *
37545293 GGGCACCG-AAGTACAAACAG
1 GGGCA-CGTATGTACAATCAG
37545313 GGGCACGTATGTACAAT
1 GGGCACGTATGTACAAT
37545330 AAGGTATAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.32, C:0.21, G:0.32, T:0.16
Consensus pattern (20 bp):
GGGCACGTATGTACAATCAG
Found at i:37545600 original size:6 final size:6
Alignment explanation
Indices: 37545589--37545618 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
37545579 AGATTCATGC
37545589 ATAATT ATAATT ATAATT ATAATT ATAATT
1 ATAATT ATAATT ATAATT ATAATT ATAATT
37545619 CAATCCACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATAATT
Found at i:37546468 original size:18 final size:16
Alignment explanation
Indices: 37546445--37546478 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
37546435 TTCTTATCGA
37546445 AAAATAATTAAATATTAT
1 AAAATAA-TAAA-ATTAT
37546463 AAAATAATAAAATTAT
1 AAAATAATAAAATTAT
37546479 GTTAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 4 0.25
18 7 0.44
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAATAATAAAATTAT
Found at i:37560229 original size:21 final size:21
Alignment explanation
Indices: 37560178--37560229 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 21
37560168 ACGTTGTTCC
*
37560178 TTTAAGTACAAAATTTAGTGAG
1 TTTAAGTAC-AAATTTAGTAAG
37560200 -TT-A-TACAAATTTAGTAAG
1 TTTAAGTACAAATTTAGTAAG
37560218 TTTAAGTACAAA
1 TTTAAGTACAAA
37560230 ATACCTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 11 0.42
19 5 0.19
20 2 0.08
21 8 0.31
ACGTcount: A:0.44, C:0.06, G:0.13, T:0.37
Consensus pattern (21 bp):
TTTAAGTACAAATTTAGTAAG
Found at i:37565584 original size:13 final size:13
Alignment explanation
Indices: 37565566--37565591 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37565556 AGCTAGCATT
37565566 TGTCAACACTAAA
1 TGTCAACACTAAA
37565579 TGTCAACACTAAA
1 TGTCAACACTAAA
37565592 CTGCAAAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (13 bp):
TGTCAACACTAAA
Found at i:37592739 original size:28 final size:28
Alignment explanation
Indices: 37592673--37592770 Score: 115
Period size: 28 Copynumber: 3.3 Consensus size: 28
37592663 CAACATGCAA
* *
37592673 TAACAGTCTGGGCCTTAGCCCAATAGAG
1 TAACAGTGTGGGCCTTAGCCCAATACAG
37592701 TAATAGTACAGTGTGGGCCTTAGCCCAATACAG
1 ---TA--ACAGTGTGGGCCTTAGCCCAATACAG
*
37592734 TAACAGTGTGGGCCTTAGCCCAATACAA
1 TAACAGTGTGGGCCTTAGCCCAATACAG
*
37592762 AAACAGTGT
1 TAACAGTGT
37592771 AATGCAATAA
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
28 33 0.54
30 2 0.03
31 2 0.03
33 24 0.39
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.22
Consensus pattern (28 bp):
TAACAGTGTGGGCCTTAGCCCAATACAG
Found at i:37592944 original size:26 final size:25
Alignment explanation
Indices: 37592871--37592951 Score: 72
Period size: 26 Copynumber: 3.1 Consensus size: 25
37592861 AACACACCAA
*
37592871 TATCGCAGCAAAGTTGCTAGTAATAG
1 TATCGCAGCAAAGCT-CTAGTAATAG
* * * * *
37592897 CATCACAGCAGAGCTGTCAGTATTAG
1 TATCGCAGCAAAGCTCT-AGTAATAG
*
37592923 TATCGCAGCAAAGCTACTAGTAACAG
1 TATCGCAGCAAAGCT-CTAGTAATAG
37592949 TAT
1 TAT
37592952 ATGTGGCAAA
Statistics
Matches: 41, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
25 1 0.02
26 39 0.95
27 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (25 bp):
TATCGCAGCAAAGCTCTAGTAATAG
Found at i:37593182 original size:27 final size:27
Alignment explanation
Indices: 37593152--37593234 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
37593142 ACATAAGGCC
37593152 ATAACAGTCATTTTATCTCCTAGGGGT
1 ATAACAGTCATTTTATCTCCTAGGGGT
*
37593179 ATAACAGTCATATTA-C-CCTACAGGGGT
1 ATAACAGTCATTTTATCTCCT--AGGGGT
** * **
37593206 ATTTCGGTCATTTTATCTTATAGGGGT
1 ATAACAGTCATTTTATCTCCTAGGGGT
37593233 AT
1 AT
37593235 TTCAATCATT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
25 3 0.07
26 1 0.02
27 39 0.87
28 1 0.02
29 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (27 bp):
ATAACAGTCATTTTATCTCCTAGGGGT
Found at i:37593235 original size:27 final size:27
Alignment explanation
Indices: 37593201--37593647 Score: 468
Period size: 27 Copynumber: 16.6 Consensus size: 27
37593191 TTACCCTACA
* * * * *
37593201 GGGGTATTTCGGTCATTTTATCTTATA
1 GGGGTATTTCGATCATTTTACCCTGTG
* * * *
37593228 GGGGTATTTCAATCATTTTAGCCTATA
1 GGGGTATTTCGATCATTTTACCCTGTG
* * * *
37593255 AGGGTATTTCGGTCATTTTACCTTAT-
1 GGGGTATTTCGATCATTTTACCCTGTG
* * *
37593281 GGGGTATTTCGATCATTTTACCTTATT
1 GGGGTATTTCGATCATTTTACCCTGTG
* *
37593308 GGGGTATTTCGGTCATTTTACCTTGTG
1 GGGGTATTTCGATCATTTTACCCTGTG
* *
37593335 GAGGTATTTCGGTCATTTTACCCTGT-
1 GGGGTATTTCGATCATTTTACCCTGTG
* * *
37593361 GAGGTATTTCGGTCATTTTACCCTATG
1 GGGGTATTTCGATCATTTTACCCTGTG
*
37593388 GGGGTATTCCGATCATTTTACCCTGTG
1 GGGGTATTTCGATCATTTTACCCTGTG
* *
37593415 GGGGTAATTC-AGTCATTTTACCCTGTA
1 GGGGTATTTCGA-TCATTTTACCCTGTG
* * * * * *
37593442 TGGGTAATTCGATTATTTTACCTTATA
1 GGGGTATTTCGATCATTTTACCCTGTG
* *
37593469 GGGGCAATTCGATCATTTTACCCTGTG
1 GGGGTATTTCGATCATTTTACCCTGTG
* *
37593496 GGGGTAATTCAATCATTTTACCCTGTG
1 GGGGTATTTCGATCATTTTACCCTGTG
*
37593523 GGGGTAATTCGATCATTTTACCCTGTG
1 GGGGTATTTCGATCATTTTACCCTGTG
* *
37593550 GGGGTAATTCGATCATTTTACCTTGTG
1 GGGGTATTTCGATCATTTTACCCTGTG
* * * *
37593577 GGGGTAATTCGATTATTTTACCTTATG
1 GGGGTATTTCGATCATTTTACCCTGTG
37593604 GGGGTATTTCGATCATTTTACCCTGTG
1 GGGGTATTTCGATCATTTTACCCTGTG
*
37593631 GGGGTATTTCGGTCATT
1 GGGGTATTTCGATCATT
37593648 CTATCCTATT
Statistics
Matches: 371, Mismatches: 45, Indels: 8
0.88 0.11 0.02
Matches are distributed among these distances:
26 50 0.13
27 320 0.86
28 1 0.00
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (27 bp):
GGGGTATTTCGATCATTTTACCCTGTG
Found at i:37600925 original size:45 final size:44
Alignment explanation
Indices: 37600855--37600941 Score: 111
Period size: 45 Copynumber: 2.0 Consensus size: 44
37600845 AAATATGAAA
* * * *
37600855 ATATAAAATTATAAAAGGATGTATATATTTGTATATATATATGC
1 ATATAAAATTATAAAAGAATATATATATATGTATACATATATGC
* *
37600899 ATATAAAAATTATAAAATAATATATATGTATGTATACATATAT
1 ATAT-AAAATTATAAAAGAATATATATATATGTATACATATAT
37600942 TTGTGAAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 4 0.11
45 32 0.89
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.40
Consensus pattern (44 bp):
ATATAAAATTATAAAAGAATATATATATATGTATACATATATGC
Found at i:37601135 original size:3 final size:3
Alignment explanation
Indices: 37601127--37601164 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
37601117 AAAATGAATA
*
37601127 AAT AAT AAT AGT AAT AAT AAT AAT CAAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT A
37601165 CAAGATTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:37601377 original size:39 final size:38
Alignment explanation
Indices: 37601282--37601377 Score: 95
Period size: 39 Copynumber: 2.4 Consensus size: 38
37601272 CATTTCGACA
**
37601282 AAAAACGCCAGCAAAAAGTGAGCATTAGCGGCATTTTTT
1 AAAAACGCC-GCAAAAAGTGAGCATTAGCGGCATTTTAG
* *
37601321 AAAAACGCCACTAAAAAAG-GAGCATTAGCGGCGCTTTTAAG
1 AAAAACGCCGC--AAAAAGTGAGCATTAGCGGC-ATTTT-AG
*
37601362 AAAAACGTCGCAAAAA
1 AAAAACGCCGCAAAAA
37601378 ACCAAAGCCC
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
38 1 0.02
39 27 0.57
40 10 0.21
41 9 0.19
ACGTcount: A:0.44, C:0.19, G:0.20, T:0.18
Consensus pattern (38 bp):
AAAAACGCCGCAAAAAGTGAGCATTAGCGGCATTTTAG
Found at i:37601694 original size:163 final size:161
Alignment explanation
Indices: 37601416--37601815 Score: 439
Period size: 163 Copynumber: 2.4 Consensus size: 161
37601406 CCTTTCGGGT
* * ** * * *
37601416 CTTTAGCGGCGTTTTCAAAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGAACAAAC
1 CTTTAGC-GCGTTTTTAGAAAAGCGCCGCTAATGCT-GGGGCTTTAGCGGCATTTTTGTA-AAGC
* * *
37601481 ACCGCTAATGCTTGGGACTTTAACGGCGTTTTTGGGGAAGCGCCGCTAATGCTGGGGGCTTTAGC
63 GCCGCTAATGCTTGGGACTTTAACGGCGTTTTTGGAGAAGCGCCGCTAATGCTGGGGCCTTTAGC
* * * *
37601546 GGTGATTTTT-GA-AACGTGTCGCTAATGCTGTGGG
128 GGCG-TTTTTGGAGAA-GCGCCGCTAATGCTGTGGC
* *
37601580 CTTTAGCGCGTTTTTTGAAAAGCGCCGCTAATGATGTGGGCTTTAGCGGCATTTTTGGTAAAGCG
1 CTTTAGCGCGTTTTTAGAAAAGCGCCGCTAATGCTG-GGGCTTTAGCGGCATTTTT-GTAAAGCG
* * * * *
37601645 CCGCTAATG-TTGTGGCCTTTAGCGGCGTTTTTGGAGAAGCGTCGCTAATGTTGTGGCCTTTAGC
64 CCGCTAATGCTTG-GGACTTTAACGGCGTTTTTGGAGAAGCGCCGCTAATGCTGGGGCCTTTAGC
*
37601709 GGCGTTTTTGGAGAAGCGCCGCTAATGCTTTGGC
128 GGCGTTTTTGGAGAAGCGCCGCTAATGCTGTGGC
* * *
37601743 CTTTAGCGTCGTTTTTGGAAAAGCGCCGCTAATGCTGGGGTCTTTAGTGGCGCTTTTT-TAAAAG
1 CTTTAGCG-CGTTTTTAGAAAAGCGCCGCTAATGCTGGGG-CTTTAGCGGC-ATTTTTGT-AAAG
37601807 CGCCGCTAA
62 CGCCGCTAA
37601816 AAACATTTTA
Statistics
Matches: 201, Mismatches: 26, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
162 8 0.04
163 129 0.64
164 59 0.29
165 5 0.02
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.32
Consensus pattern (161 bp):
CTTTAGCGCGTTTTTAGAAAAGCGCCGCTAATGCTGGGGCTTTAGCGGCATTTTTGTAAAGCGCC
GCTAATGCTTGGGACTTTAACGGCGTTTTTGGAGAAGCGCCGCTAATGCTGGGGCCTTTAGCGGC
GTTTTTGGAGAAGCGCCGCTAATGCTGTGGC
Found at i:37601806 original size:41 final size:40
Alignment explanation
Indices: 37601416--37601815 Score: 385
Period size: 41 Copynumber: 9.8 Consensus size: 40
37601406 CCTTTCGGGT
*** **
37601416 CTTTAGCGGCGTTTTCAAAAAAGCGCCGCTAATGCTCAAGG
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCT-GGGG
* * *
37601457 CTTTAGCGGCGTTTTT-GAACAAACACCGCTAATGCTTGGGA
1 CTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGC-TGGGG
* **
37601498 CTTTAACGGCGTTTTTGGGGAAGCGCCGCTAATGCTGGGGG
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCT-GGGG
* * * *
37601539 CTTTAGCGGTGATTTTT-GAAACGTGTCGCTAATGCTGTGGG
1 CTTTAGCGGCG-TTTTTGGAAAAGCGCCGCTAATGCTG-GGG
* *
37601580 CTTTAGC-GCGTTTTTTGAAAAGCGCCGCTAATGATGTGGG
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTG-GGG
* * * *
37601620 CTTTAGCGGCATTTTTGGTAAAGCGCCGCTAATGTTGTGGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTG-GGG
* * * *
37601661 CTTTAGCGGCGTTTTTGGAGAAGCGTCGCTAATGTTGTGGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTG-GGG
* * *
37601702 CTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGCTTTGGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC-TGGGG
*
37601743 CTTTAGCGTCGTTTTTGGAAAAGCGCCGCTAATGCTGGGG
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTGGGG
* *
37601783 TCTTTAGTGGCGCTTTTT-TAAAAGCGCCGCTAA
1 -CTTTAGCGGCG-TTTTTGGAAAAGCGCCGCTAA
37601816 AAACATTTTA
Statistics
Matches: 304, Mismatches: 44, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
39 5 0.02
40 36 0.12
41 250 0.82
42 13 0.04
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.32
Consensus pattern (40 bp):
CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTGGGG
Found at i:37602558 original size:280 final size:285
Alignment explanation
Indices: 37602220--37602866 Score: 914
Period size: 280 Copynumber: 2.3 Consensus size: 285
37602210 AAGAGTTAGG
* *
37602220 GATTTAGGGTTTAGGGATTCAGGGGTCAAGTTAGGGTTTTGGGTTTAGATTAATTAGTTTTTTAA
1 GATTTAGGGTTTAAGGATTCAGGGGTCAAGTTAGGGTTTTAGGTTTAGATTAATTAGTTTTTTAA
*
37602285 TTTATATTTTAAATATGTTATTATATAATTGTAAAAGAGATAAG-AATAAATTTGTTTAGGGTTT
66 TTTATATTTTAAATATGTTATTATATAATTATAAAAGAGAT-AGTAATAAATTTGTTTAGGGTTT
**
37602349 TTGGTTTAGGGTATATGATAAATTTAAGATTTAAGACCGGTTTAGGAGTTACTATTTTAAAGTTT
130 TTGGTTTAGGGTATATGATAAATTTAAGATTTAAGACCAATTTAGGAGTTACTATTTTAAAGTTT
* * * *
37602414 ATGG-G-G-TATGGATT-TAAG-GATTATGGTTTAAGGGTTGGGATTTAAATGTTT-GGGGTTTG
195 ATGGAGTGATAAGGATTATAAGAGATTATGGTTTAAGGGTTGGGATTT-AAGGTTTAAGGGTTAG
*
37602473 GGGTTTGACGTTAGGGGTTAAGAATAT
259 GGGTTAGACGTTAGGGGTTAAGAATAT
* * **
37602500 GATTTAAGTTTTAAGGATTCAGGGGTTGAGTTAGGGTTTTAGGTTTAGATTAATTAGTTTTTTAA
1 GATTTAGGGTTTAAGGATTCAGGGGTCAAGTTAGGGTTTTAGGTTTAGATTAATTAGTTTTTTAA
* *
37602565 TTTATATTTTAAATATTTTCTTATATAATTATAAAAGAGATAGTAATAAATTTGTTTAGGGTTTT
66 TTTATATTTTAAATATGTTATTATATAATTATAAAAGAGATAGTAATAAATTTGTTTAGGGTTTT
* * * *
37602630 TGGTTTAGGGTATATGATTAATTTAATATTTAAGGCCAATTTAGGAGTTACTATTTTAAGGTTTA
131 TGGTTTAGGGTATATGATAAATTTAAGATTTAAGACCAATTTAGGAGTTACTATTTTAAAGTTTA
*
37602695 TGGAGTATGAATTTAAGGATTAGAGATTAGAGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAA
196 TGGAG--TG-A--TAAGGATT----ATAAGAGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAA
37602760 GGGTTAGGGGTTAGACGTTAGGGGTTAAGAATAT
252 GGGTTAGGGGTTAGACGTTAGGGGTTAAGAATAT
* *
37602794 GATTTAGGGTTTAAGAATTTA-GGGTCAAGTTAGGGTTTTAGGTTTAGATTAATTAGTTTTTTTA
1 GATTTAGGGTTTAAGGATTCAGGGGTCAAGTTAGGGTTTTAGGTTTAGATTAATTAG-TTTTTT-
37602858 AATTTATAT
64 AATTTATAT
37602867 GTATTGAATG
Statistics
Matches: 322, Mismatches: 27, Indels: 21
0.87 0.07 0.06
Matches are distributed among these distances:
279 2 0.01
280 180 0.56
281 1 0.00
284 1 0.00
288 7 0.02
293 42 0.13
294 80 0.25
295 9 0.03
ACGTcount: A:0.30, C:0.02, G:0.25, T:0.43
Consensus pattern (285 bp):
GATTTAGGGTTTAAGGATTCAGGGGTCAAGTTAGGGTTTTAGGTTTAGATTAATTAGTTTTTTAA
TTTATATTTTAAATATGTTATTATATAATTATAAAAGAGATAGTAATAAATTTGTTTAGGGTTTT
TGGTTTAGGGTATATGATAAATTTAAGATTTAAGACCAATTTAGGAGTTACTATTTTAAAGTTTA
TGGAGTGATAAGGATTATAAGAGATTATGGTTTAAGGGTTGGGATTTAAGGTTTAAGGGTTAGGG
GTTAGACGTTAGGGGTTAAGAATAT
Found at i:37602910 original size:18 final size:18
Alignment explanation
Indices: 37602876--37602910 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37602866 TGTATTGAAT
*
37602876 GGTTAATTTAGGATTTAA
1 GGTTAATTAAGGATTTAA
*
37602894 GGTTAATTAAGGGTTTA
1 GGTTAATTAAGGATTTA
37602911 GTACTTGAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.43
Consensus pattern (18 bp):
GGTTAATTAAGGATTTAA
Found at i:37604704 original size:21 final size:21
Alignment explanation
Indices: 37604680--37604787 Score: 52
Period size: 21 Copynumber: 5.2 Consensus size: 21
37604670 TCAATCATAT
37604680 CATAACTTATATATAAACTTA
1 CATAACTTATATATAAACTTA
*
37604701 CAT-A---ATACAT-AACTTA
1 CATAACTTATATATAAACTTA
* *
37604717 CATAA-TAACT-TACATAACTTA
1 CATAACTTA-TATATA-AACTTA
* *
37604738 TATAGAAACTTATATATAAACTTG
1 CAT--AA-CTTATATATAAACTTA
*
37604762 CATAACTTACATA-ATAACTTA
1 CATAACTTATATATA-AACTTA
37604783 CATAA
1 CATAA
37604788 TATATAGCCT
Statistics
Matches: 65, Mismatches: 10, Indels: 24
0.66 0.10 0.24
Matches are distributed among these distances:
16 9 0.14
17 6 0.09
19 2 0.03
20 3 0.05
21 28 0.43
22 2 0.03
23 2 0.03
24 8 0.12
25 5 0.08
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (21 bp):
CATAACTTATATATAAACTTA
Found at i:37604713 original size:28 final size:28
Alignment explanation
Indices: 37604680--37604924 Score: 86
Period size: 34 Copynumber: 8.4 Consensus size: 28
37604670 TCAATCATAT
*
37604680 CATAACTTATAT-ATAAACTTACATAATA
1 CATAACTTACATAAT-AACTTACATAATA
37604708 CATAACTTACATAATAACTTACATAACTTA
1 CATAACTTACATAATAACTTACATAA--TA
* * *
37604738 TATAGAAACTTATAT-ATAA---AC-T--TG
1 CAT---AACTTACATAATAACTTACATAATA
37604762 CATAACTTACATAATAACTTACATAATA
1 CATAACTTACATAATAACTTACATAATA
* * * *
37604790 TATAGCCTACATAAATTGCATAACTCACATAATA
1 CATAACTTACAT--A----ATAACTTACATAATA
*
37604824 CACAACTTACGTAACTTAAATAACTTACATAATA
1 CATAACTTAC---A--T-AATAACTTACATAATA
*
37604858 CATAACTTACATTAAT-ATTATACATAACTTA
1 CATAACTTACA-TAATAACT-TACATAA--TA
37604889 CATAACTTA-AT--TAA-TTA-ATATTATA
1 CATAACTTACATAATAACTTACATA--ATA
37604914 CATAACTTACA
1 CATAACTTACA
37604925 ACTTACATAA
Statistics
Matches: 168, Mismatches: 18, Indels: 64
0.67 0.07 0.26
Matches are distributed among these distances:
21 8 0.05
22 4 0.02
24 3 0.02
25 16 0.10
26 4 0.02
27 3 0.02
28 36 0.21
29 15 0.09
30 8 0.05
31 12 0.07
32 4 0.02
33 8 0.05
34 43 0.26
37 1 0.01
38 2 0.01
39 1 0.01
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.34
Consensus pattern (28 bp):
CATAACTTACATAATAACTTACATAATA
Found at i:37604720 original size:9 final size:9
Alignment explanation
Indices: 37604695--37604938 Score: 102
Period size: 9 Copynumber: 26.7 Consensus size: 9
37604685 CTTATATATA
37604695 AACTTACAT
1 AACTTACAT
37604704 AA--TACAT
1 AACTTACAT
37604711 AACTTACATAAT
1 AACTTAC---AT
37604723 AACTTACAT
1 AACTTACAT
*
37604732 AACTTATAT
1 AACTTACAT
*
37604741 AGAAACTTATATAT
1 ---AAC-T-TACAT
*
37604755 AAACTTGCAT
1 -AACTTACAT
37604765 AACTTACATAAT
1 AACTTAC---AT
37604777 AACTTACAT
1 AACTTACAT
*
37604786 AA--TATAT
1 AACTTACAT
* *
37604793 AGCCTACAT
1 AACTTACAT
* *
37604802 AAATTGCAT
1 AACTTACAT
*
37604811 AACTCACAT
1 AACTTACAT
*
37604820 AA--TACAC
1 AACTTACAT
*
37604827 AACTTACGT
1 AACTTACAT
*
37604836 AACTTAAAT
1 AACTTACAT
37604845 AACTTACAT
1 AACTTACAT
37604854 AA--TACAT
1 AACTTACAT
37604861 AACTTACATT
1 AACTTACA-T
*
37604871 AATATTATACAT
1 -A-ACT-TACAT
37604883 AACTTACAT
1 AACTTACAT
37604892 AACTTA-ATT
1 AACTTACA-T
37604901 AA-TTA-AT
1 AACTTACAT
*
37604908 -ATTATACAT
1 AACT-TACAT
37604917 AACTTAC--
1 AACTTACAT
37604924 AACTTACAT
1 AACTTACAT
37604933 AACTTA
1 AACTTA
37604939 ATACATTATA
Statistics
Matches: 181, Mismatches: 24, Indels: 60
0.68 0.09 0.23
Matches are distributed among these distances:
6 1 0.01
7 33 0.18
8 7 0.04
9 91 0.50
10 8 0.04
11 3 0.02
12 28 0.15
13 5 0.03
14 5 0.03
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.34
Consensus pattern (9 bp):
AACTTACAT
Found at i:37604778 original size:12 final size:12
Alignment explanation
Indices: 37604763--37604789 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
37604753 ATAAACTTGC
37604763 ATAACTTACATA
1 ATAACTTACATA
37604775 ATAACTTACATA
1 ATAACTTACATA
37604787 ATA
1 ATA
37604790 TATAGCCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (12 bp):
ATAACTTACATA
Found at i:37605339 original size:19 final size:18
Alignment explanation
Indices: 37605315--37605368 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
37605305 TAATGTTTAC
*
37605315 TATATTATTATTTTAATAT
1 TATATTATTA-TTTAATAA
37605334 TATATTA-TATTTAATAA
1 TATATTATTATTTAATAA
*
37605351 TACTTTTATTATTTAATA
1 TA-TATTATTATTTAATA
37605369 CATTAGCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 9 0.29
18 6 0.19
19 16 0.52
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
TATATTATTATTTAATAA
Found at i:37607113 original size:16 final size:16
Alignment explanation
Indices: 37607089--37607122 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
37607079 TAATACTAAT
*
37607089 TAATTTTTTATATTAA
1 TAATGTTTTATATTAA
*
37607105 TAATGTTTTATTTTAA
1 TAATGTTTTATATTAA
37607121 TA
1 TA
37607123 TTTAATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TAATGTTTTATATTAA
Found at i:37607240 original size:43 final size:43
Alignment explanation
Indices: 37607209--37607417 Score: 265
Period size: 43 Copynumber: 4.9 Consensus size: 43
37607199 GTTTGTAATC
* * **
37607209 AAAGCGTCGCTAAAGGTCTTGAGCTATAGCGGTGTTTGTGAAA
1 AAAGCGCCGCTAAAGGTCTTGAGCTATAGCGGCGTTTGTGGGA
* * * * * *
37607252 AAAGTGCCGCTAAAAGCCATGATCTATAGCAGCGTTTGTGGGA
1 AAAGCGCCGCTAAAGGTCTTGAGCTATAGCGGCGTTTGTGGGA
* *
37607295 AAAACGTCGCTAAAGGTCTTGAGCTATAGCGGCGTTTGTGGGA
1 AAAGCGCCGCTAAAGGTCTTGAGCTATAGCGGCGTTTGTGGGA
* * *
37607338 AAAGCGACGCTAAAGGTCTTGATCTATAGCGGTGTTTGTGGGA
1 AAAGCGCCGCTAAAGGTCTTGAGCTATAGCGGCGTTTGTGGGA
* *
37607381 AAAGCGCCGCTAAAGGTCCTGACCTATAGCGGCGTTT
1 AAAGCGCCGCTAAAGGTCTTGAGCTATAGCGGCGTTT
37607418 ATTTCAAAAA
Statistics
Matches: 140, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 140 1.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGGTCTTGAGCTATAGCGGCGTTTGTGGGA
Found at i:37614008 original size:30 final size:30
Alignment explanation
Indices: 37613940--37614010 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
37613930 TCGTCCACAC
*
37613940 GAGCGTGTGTCTCAGTCATGTGTCACACAT
1 GAGCGTGTGTCTCAGTCATGTGTCACAAAT
* * *
37613970 GAGTGTGTGTCTCAGTCGTGTGTGACAAAT
1 GAGCGTGTGTCTCAGTCATGTGTCACAAAT
37614000 G-GCCGTGTGTC
1 GAG-CGTGTGTC
37614011 CCCTGTAGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 1 0.03
30 34 0.97
ACGTcount: A:0.17, C:0.20, G:0.32, T:0.31
Consensus pattern (30 bp):
GAGCGTGTGTCTCAGTCATGTGTCACAAAT
Found at i:37621115 original size:30 final size:30
Alignment explanation
Indices: 37621076--37621133 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
37621066 AGACATGGGT
*
37621076 GTGTGTCTCAGCCGTGTGTCACACACAGGC
1 GTGTATCTCAGCCGTGTGTCACACACAGGC
*
37621106 GTGTATCTCAGCCGTGTGTGACACACAG
1 GTGTATCTCAGCCGTGTGTCACACACAG
37621134 CTAGGCGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (30 bp):
GTGTATCTCAGCCGTGTGTCACACACAGGC
Found at i:37623583 original size:40 final size:40
Alignment explanation
Indices: 37623528--37623608 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
37623518 AGGAGTTAGT
37623528 TATGATCATCAAAGCGGGTTTGTAGCAACCCTAACCTGTC
1 TATGATCATCAAAGCGGGTTTGTAGCAACCCTAACCTGTC
37623568 TATGATCATCAAAGCGGGTTTGTAGCAACCCTAACCTGTC
1 TATGATCATCAAAGCGGGTTTGTAGCAACCCTAACCTGTC
37623608 T
1 T
37623609 CCGTCACTGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
TATGATCATCAAAGCGGGTTTGTAGCAACCCTAACCTGTC
Found at i:37646124 original size:25 final size:23
Alignment explanation
Indices: 37646078--37646125 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
37646068 AAAATATTCT
*
37646078 TCACATTTTATATAAATTATAAA
1 TCACATTTTATATAAATAATAAA
*
37646101 TCACATATTTATTTAAATAAATAAA
1 TCACAT-TTTATATAAAT-AATAAA
37646126 ATAAATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 6 0.29
24 10 0.48
25 5 0.24
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (23 bp):
TCACATTTTATATAAATAATAAA
Found at i:37646966 original size:14 final size:14
Alignment explanation
Indices: 37646944--37646983 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
37646934 TTTGTATATT
*
37646944 ATTAATTTTTAATA
1 ATTATTTTTTAATA
*
37646958 ATTATTTTTT-ATG
1 ATTATTTTTTAATA
37646971 ATTATTTTTTAAT
1 ATTATTTTTTAAT
37646984 TTGTAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (14 bp):
ATTATTTTTTAATA
Found at i:37649048 original size:2 final size:2
Alignment explanation
Indices: 37649036--37649064 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
37649026 TCGGTTTTGA
37649036 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37649065 TAGAAATATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37649536 original size:28 final size:28
Alignment explanation
Indices: 37649482--37649536 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
37649472 TTTTTTAAAA
* *
37649482 AATTTATTTCATTTTCATTATTGAAATC
1 AATTTATTTCATTTTCATTAATCAAATC
* *
37649510 AATTTTTTTTATTTTCATTAATCAAAT
1 AATTTATTTCATTTTCATTAATCAAAT
37649537 GTGTTTTCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (28 bp):
AATTTATTTCATTTTCATTAATCAAATC
Found at i:37654756 original size:19 final size:19
Alignment explanation
Indices: 37654734--37654770 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
37654724 ATTTGAAATA
37654734 AAATAGAAAATTTTGGAAG
1 AAATAGAAAATTTTGGAAG
*
37654753 AAATGGAAAATTTTGGAA
1 AAATAGAAAATTTTGGAA
37654771 ATATGGGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.27
Consensus pattern (19 bp):
AAATAGAAAATTTTGGAAG
Found at i:37657434 original size:50 final size:50
Alignment explanation
Indices: 37657328--37657499 Score: 148
Period size: 50 Copynumber: 3.3 Consensus size: 50
37657318 GGGAATGAAA
* *
37657328 TCCCATGTAAGACCATGTCTGGGACATGG-GATTGGCATTATTGAGATTATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCG-TTGGCA-CA---A-A-TATGAGAGG
*
37657384 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAAAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAAATATGAGAGG
*** * * * * ** **
37657434 TCCCCCATAAGACTATGTCTGGGACATGGCATGGGTACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAAATATGAGAGG
37657484 TCCCATGTAAGACCAT
1 TCCCATGTAAGACCAT
37657500 ATCTATGATA
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
50 57 0.59
51 1 0.01
52 1 0.01
55 1 0.01
56 35 0.36
57 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAAATATGAGAGG
Found at i:37664893 original size:50 final size:50
Alignment explanation
Indices: 37664787--37664958 Score: 148
Period size: 50 Copynumber: 3.3 Consensus size: 50
37664777 GGGAATGAAA
* *
37664787 TCCCATGTAAGACCATGTCTGGGACATGG-GATTGGCATTATTGAGATTATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCG-TTGGCA-CA---A-A-TATGAGAGG
*
37664843 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAAAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAAATATGAGAGG
*** * * * * ** **
37664893 TCCCCCATAAGACTATGTCTGGGACATGGCATGGGTACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAAATATGAGAGG
37664943 TCCCATGTAAGACCAT
1 TCCCATGTAAGACCAT
37664959 ATCTATGATA
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
50 57 0.59
51 1 0.01
52 1 0.01
55 1 0.01
56 35 0.36
57 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAAATATGAGAGG
Found at i:37665245 original size:12 final size:12
Alignment explanation
Indices: 37665228--37665266 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
37665218 ATGAGTTATT
*
37665228 TAAGTAAGCAAG
1 TAAGTAAACAAG
37665240 TAAGTAAACAAG
1 TAAGTAAACAAG
* *
37665252 TAAGTGAATAAG
1 TAAGTAAACAAG
37665264 TAA
1 TAA
37665267 AGAACCGAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.54, C:0.05, G:0.21, T:0.21
Consensus pattern (12 bp):
TAAGTAAACAAG
Found at i:37670547 original size:2 final size:2
Alignment explanation
Indices: 37670540--37670566 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
37670530 AATGGATGTG
37670540 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
37670567 GAAATGTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37679045 original size:26 final size:26
Alignment explanation
Indices: 37679015--37679093 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
37679005 AAACTCATCT
37679015 AAAAGAAAACTCAAGAGAAATTCTTA
1 AAAAGAAAACTCAAGAGAAATTCTTA
37679041 AAAAGAAAACTCAAGAGAAATTCTTA
1 AAAAGAAAACTCAAGAGAAATTCTTA
37679067 AAAAGAAAACTCAAGAGAAATTCTTA
1 AAAAGAAAACTCAAGAGAAATTCTTA
37679093 A
1 A
37679094 GTCAAAAGGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.58, C:0.11, G:0.11, T:0.19
Consensus pattern (26 bp):
AAAAGAAAACTCAAGAGAAATTCTTA
Found at i:37679545 original size:18 final size:18
Alignment explanation
Indices: 37679522--37679558 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
37679512 TATGTTTCAC
*
37679522 TTTTATTGAATTTAATTT
1 TTTTATTGAATTAAATTT
*
37679540 TTTTATTTAATTAAATTT
1 TTTTATTGAATTAAATTT
37679558 T
1 T
37679559 ATAGCATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTTATTGAATTAAATTT
Found at i:37689937 original size:22 final size:21
Alignment explanation
Indices: 37689911--37689953 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
37689901 TACAATCCAC
*
37689911 AACTAAATAATAATAATAAAAT
1 AACTAAAAAAT-ATAATAAAAT
*
37689933 AACTAAAAAATATAATTAAAT
1 AACTAAAAAATATAATAAAAT
37689954 TAAAATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (21 bp):
AACTAAAAAATATAATAAAAT
Found at i:37694119 original size:12 final size:12
Alignment explanation
Indices: 37694098--37694136 Score: 55
Period size: 11 Copynumber: 3.4 Consensus size: 12
37694088 AACATTTTTA
37694098 TAAT-AAAATAT
1 TAATAAAAATAT
37694109 TAATAAAAATA-
1 TAATAAAAATAT
*
37694120 TAATTAAAATAT
1 TAATAAAAATAT
37694132 TAATA
1 TAATA
37694137 TCATAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TAATAAAAATAT
Found at i:37701514 original size:14 final size:14
Alignment explanation
Indices: 37701495--37701522 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37701485 ATTAGTCGAT
37701495 CTCGTTTTTACGCC
1 CTCGTTTTTACGCC
37701509 CTCGTTTTTACGCC
1 CTCGTTTTTACGCC
37701523 ACGTATGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.36, G:0.14, T:0.43
Consensus pattern (14 bp):
CTCGTTTTTACGCC
Found at i:37702978 original size:15 final size:15
Alignment explanation
Indices: 37702958--37702988 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
37702948 TGACCCCTGC
37702958 AGTCAAATATTTCTA
1 AGTCAAATATTTCTA
37702973 AGTCAAATATTTCTA
1 AGTCAAATATTTCTA
37702988 A
1 A
37702989 CTTTTTCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (15 bp):
AGTCAAATATTTCTA
Found at i:37713871 original size:29 final size:29
Alignment explanation
Indices: 37713628--37713857 Score: 221
Period size: 29 Copynumber: 7.9 Consensus size: 29
37713618 AAAAGTCAAA
*
37713628 ACCATCCCTTTTCATATTCGATGGTCGTC
1 ACCATCCCTTTTCATATTTGATGGTCGTC
* *
37713657 ACCATCCCTTTTTATAGTTGATGGTCGTC
1 ACCATCCCTTTTCATATTTGATGGTCGTC
*
37713686 ACCATCCCTTTTCATAGTTGATGGTCGTC
1 ACCATCCCTTTTCATATTTGATGGTCGTC
* * * * * *
37713715 ATCATCCCCTTTCATAATTGATAGCCG-A
1 ACCATCCCTTTTCATATTTGATGGTCGTC
* * * * *
37713743 AGCTATCTCTTTTCATATTTGATAGCCG-A
1 A-CCATCCCTTTTCATATTTGATGGTCGTC
* * **
37713772 AGCTATCCCTTTTCAGATTCAATGGTCGTC
1 A-CCATCCCTTTTCATATTTGATGGTCGTC
* * *
37713802 ACCATCCCCTTCCATAGTTGATGGTCGTC
1 ACCATCCCTTTTCATATTTGATGGTCGTC
*
37713831 ACCATCCCTTTTCATATTTGATAGTCG
1 ACCATCCCTTTTCATATTTGATGGTCG
37713858 AAGCTATCCC
Statistics
Matches: 166, Mismatches: 33, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
28 1 0.01
29 164 0.99
30 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.37
Consensus pattern (29 bp):
ACCATCCCTTTTCATATTTGATGGTCGTC
Found at i:37720360 original size:16 final size:16
Alignment explanation
Indices: 37720339--37720372 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
37720329 TTTGTGTTCG
*
37720339 TTGCAGCAAAATGAAA
1 TTGCAGAAAAATGAAA
*
37720355 TTGCAGAAAAATGTAA
1 TTGCAGAAAAATGAAA
37720371 TT
1 TT
37720373 TTTTTAGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.18, T:0.26
Consensus pattern (16 bp):
TTGCAGAAAAATGAAA
Found at i:37734360 original size:56 final size:50
Alignment explanation
Indices: 37734269--37734510 Score: 247
Period size: 50 Copynumber: 4.7 Consensus size: 50
37734259 GGTAAAGAGA
37734269 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCACGAAAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGAT---GAAAGG
* *
37734325 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAAAGG
** * * * *
37734375 TCCCCCGTAAGACCATGTCTGGGACATAGCATGGGCACCGATATGAGAA-C
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGA-AAGG
* * * * **
37734425 TCCCATGTAAGACCATATCTGGGATATGGCATTAGCA--GTACATGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAAAGG
* *
37734474 TCCCATCTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37734511 TGCTATTATC
Statistics
Matches: 159, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
48 3 0.02
49 37 0.23
50 75 0.47
51 1 0.01
53 5 0.03
55 2 0.01
56 36 0.23
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAAAGG
Found at i:37740380 original size:2 final size:2
Alignment explanation
Indices: 37740375--37740399 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37740365 GGCATATATA
37740375 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
37740400 ATAATCAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:37759255 original size:35 final size:35
Alignment explanation
Indices: 37759214--37759294 Score: 144
Period size: 35 Copynumber: 2.3 Consensus size: 35
37759204 GATTTTCTTC
37759214 CAAATTATTATTCATTCATTCATAATCATATGGTA
1 CAAATTATTATTCATTCATTCATAATCATATGGTA
*
37759249 CAAATTATTATTCATTCGTTCATAATCATATGGTA
1 CAAATTATTATTCATTCATTCATAATCATATGGTA
*
37759284 CAAATAATTAT
1 CAAATTATTAT
37759295 ACATGAATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (35 bp):
CAAATTATTATTCATTCATTCATAATCATATGGTA
Found at i:37762266 original size:70 final size:71
Alignment explanation
Indices: 37762141--37762277 Score: 183
Period size: 70 Copynumber: 1.9 Consensus size: 71
37762131 GCCTTCCTGC
* * * *
37762141 ATTGACAGGGAAGCAGATTGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAA
1 ATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGAGATGGAGCTGGTTAAA
37762206 GACAAA
66 GACAAA
37762212 ATTGACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTC-CATCGGTTGCAG-TGGAGCTGGTT
1 ATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTC-TCGGTTG-AGATGGAGCTGGTT
37762273 AAAGA
63 AAAGA
37762278 TAACAGATCT
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
69 6 0.10
70 32 0.54
71 21 0.36
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (71 bp):
ATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGAGATGGAGCTGGTTAAA
GACAAA
Found at i:37762362 original size:88 final size:87
Alignment explanation
Indices: 37762214--37762377 Score: 233
Period size: 88 Copynumber: 1.9 Consensus size: 87
37762204 AAGACAAAAT
*
37762214 TGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAT
1 TGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCAGGTTAAAGAT
37762279 AACAGATCTTGCCTTCCTGCGA
66 AACAGATCTTGCCTTCCTGCGA
* * *
37762301 TGACAGCGAAGCAGATCGAAGATAC-CAGCCTTGCCTCCCTCGGTTGC-GATGGGGCAGGTTAAA
1 TGACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTCCATCGGTTGCAG-TGGAGCAGGTTAAA
**
37762364 GATAGTAGATCTTG
63 GATAACAGATCTTG
37762378 TCCCTAAGCA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
87 21 0.31
88 45 0.66
89 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (87 bp):
TGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCAGGTTAAAGAT
AACAGATCTTGCCTTCCTGCGA
Found at i:37762596 original size:44 final size:45
Alignment explanation
Indices: 37762539--37762698 Score: 148
Period size: 44 Copynumber: 3.6 Consensus size: 45
37762529 ATCGCATCAG
*
37762539 GTCTTATTTCCCTGAGGTTGCAGTGGAGCAGACTG-AGAA-AATAA
1 GTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAGAAGAA-AA
* * ** * *
37762583 GTCTTATCCCCCTGAAGTCACAGTGGGGCAGACTGAAGAAGCAAA
1 GTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAGAAGAAAA
* * ** *
37762628 -TCTTATCTCCCTGAGATTGCAGTGGAGCAGATTGAAGTCGATAA
1 GTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAGAAGAAAA
* * *
37762672 -TCCTATCTCCCCGACGTTGCAGTGGAG
1 GTCTTATCTCCCTGAGGTTGCAGTGGAG
37762699 TGGATTGAAG
Statistics
Matches: 92, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
44 85 0.92
45 6 0.07
46 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (45 bp):
GTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAGAAGAAAA
Found at i:37766635 original size:20 final size:20
Alignment explanation
Indices: 37766610--37766651 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
37766600 ATTTTTTATC
*
37766610 TTTTATACATTTTAAAATAT
1 TTTTATAAATTTTAAAATAT
*
37766630 TTTTATAAATTTTAAATTAT
1 TTTTATAAATTTTAAAATAT
37766650 TT
1 TT
37766652 GTTGATGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTATAAATTTTAAAATAT
Found at i:37766829 original size:24 final size:26
Alignment explanation
Indices: 37766783--37766831 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
37766773 AAAGATTAGT
*
37766783 GATCAAATTGAATTAAAAAATATAAG
1 GATCAAATTGAATCAAAAAATATAAG
*
37766809 GATCAAATTG-A-CAAAATATATAA
1 GATCAAATTGAATCAAAAAATATAA
37766832 ATACTAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
25 1 0.05
26 10 0.48
ACGTcount: A:0.57, C:0.06, G:0.10, T:0.27
Consensus pattern (26 bp):
GATCAAATTGAATCAAAAAATATAAG
Found at i:37767794 original size:22 final size:22
Alignment explanation
Indices: 37767769--37767840 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
37767759 TTTATATGTG
37767769 AAATATTTCAATTAATTATTTC
1 AAATATTTCAATTAATTATTTC
* *
37767791 AAATA--TC-ATTATGTTTATTGTG
1 AAATATTTCAATTA--ATTATT-TC
*
37767813 AAATATTTCAAATAATTATTTC
1 AAATATTTCAATTAATTATTTC
37767835 AAATAT
1 AAATAT
37767841 AGATACAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
19 4 0.10
20 2 0.05
21 5 0.13
22 18 0.46
23 5 0.13
24 2 0.05
25 3 0.08
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (22 bp):
AAATATTTCAATTAATTATTTC
Found at i:37767959 original size:13 final size:13
Alignment explanation
Indices: 37767941--37767966 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37767931 ATAAAAGAGT
37767941 TATTAATTAAAAA
1 TATTAATTAAAAA
37767954 TATTAATTAAAAA
1 TATTAATTAAAAA
37767967 ACTTGAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TATTAATTAAAAA
Found at i:37767978 original size:44 final size:45
Alignment explanation
Indices: 37767924--37768010 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 45
37767914 ATTATTTGAT
*
37767924 TTGATAAATAAAAGAGTTATTAATTAAAAATATTAATTAAAAAAC
1 TTGATAAATAAAAGAGTTATTAATTAAAAACATTAATTAAAAAAC
* * * *
37767969 TTGA-AAATAATATATTTATTAATTAAAAGCATTAATTAAAAA
1 TTGATAAATAAAAGAGTTATTAATTAAAAACATTAATTAAAAA
37768011 GAAAGTTTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 33 0.89
45 4 0.11
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.36
Consensus pattern (45 bp):
TTGATAAATAAAAGAGTTATTAATTAAAAACATTAATTAAAAAAC
Found at i:37768388 original size:22 final size:19
Alignment explanation
Indices: 37768345--37768394 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 19
37768335 TTTTTTTCTC
*
37768345 TTTCTAAAATCGATTTATT
1 TTTCTAAAATCGATATATT
37768364 TTTCTAAATATCGAAATATATT
1 TTTCTAAA-ATCG--ATATATT
37768386 TTT-TAAAAT
1 TTTCTAAAAT
37768395 ATTTTTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 8 0.30
20 6 0.22
21 4 0.15
22 9 0.33
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (19 bp):
TTTCTAAAATCGATATATT
Found at i:37768398 original size:12 final size:12
Alignment explanation
Indices: 37768381--37768406 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37768371 ATATCGAAAT
37768381 ATATTTTTTAAA
1 ATATTTTTTAAA
37768393 ATATTTTTTAAA
1 ATATTTTTTAAA
37768405 AT
1 AT
37768407 CATAATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATATTTTTTAAA
Found at i:37769942 original size:6 final size:6
Alignment explanation
Indices: 37769931--37769969 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
37769921 TAGTCTATCT
* * *
37769931 ACCTGA ACCTGA ACCTGA ACCTAA ACCTAA ACCTAA ACC
1 ACCTAA ACCTAA ACCTAA ACCTAA ACCTAA ACCTAA ACC
37769970 CTTTTGCTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.41, C:0.36, G:0.08, T:0.15
Consensus pattern (6 bp):
ACCTAA
Found at i:37769948 original size:12 final size:12
Alignment explanation
Indices: 37769931--37769969 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
37769921 TAGTCTATCT
*
37769931 ACCTGAACCTGA
1 ACCTGAACCTAA
37769943 ACCTGAACCTAA
1 ACCTGAACCTAA
*
37769955 ACCTAAACCTAA
1 ACCTGAACCTAA
37769967 ACC
1 ACC
37769970 CTTTTGCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.41, C:0.36, G:0.08, T:0.15
Consensus pattern (12 bp):
ACCTGAACCTAA
Found at i:37775487 original size:25 final size:27
Alignment explanation
Indices: 37775441--37775490 Score: 70
Period size: 25 Copynumber: 1.9 Consensus size: 27
37775431 AAAATATTAA
37775441 AATATTAATATAAAATATCATATTTTC
1 AATATTAATATAAAATATCATATTTTC
37775468 AATATT-AT-TAAACATA-CATATTT
1 AATATTAATATAAA-ATATCATATTT
37775491 AATTATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 11 0.50
26 5 0.23
27 6 0.27
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (27 bp):
AATATTAATATAAAATATCATATTTTC
Found at i:37775603 original size:16 final size:14
Alignment explanation
Indices: 37775577--37775617 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
37775567 TTTCAATTTT
37775577 ATTTT-AATAATAA
1 ATTTTAAATAATAA
37775590 ATTTTTAAAATAAT-A
1 A-TTTT-AAATAATAA
37775605 ATTTTAAATAATA
1 ATTTTAAATAATA
37775618 TTCTTCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 8 0.33
14 8 0.33
15 2 0.08
16 6 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
ATTTTAAATAATAA
Found at i:37775699 original size:15 final size:15
Alignment explanation
Indices: 37775650--37775701 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
37775640 ATTCAATATT
*
37775650 AATATTTTAATAATA
1 AATATATTAATAATA
*
37775665 AATAATTATTAGAATTATA
1 AAT-A-TATT--AATAATA
37775684 AATATATTAATAATA
1 AATATATTAATAATA
37775699 AAT
1 AAT
37775702 GTTTTGTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
AATATATTAATAATA
Found at i:37775912 original size:109 final size:109
Alignment explanation
Indices: 37775712--37775929 Score: 355
Period size: 109 Copynumber: 2.0 Consensus size: 109
37775702 GTTTTGTAAT
* * *
37775712 ATAAAGGTTAAAATTTGTCATAAGTCTATGTACTTTTCACAAATTTACAATTTAGTCTTTATACT
1 ATAAAGGTTAAAATATGTCATAAGTATATGTACTTTTCACAAATTTACAATTTAGTCTTTACACT
*
37775777 TTTATTTTCAAGAACTAAGTCTCTCTACTTTTCAGATTTGAAAA
66 TTTATTTTCAAGAACTAAGTCCCTCTACTTTTCAGATTTGAAAA
** *
37775821 ATAAAGGTTAAAATATGTCATAAGTATATGTACTTTTCACAAATTTGTAATTTAGTCTTTGCACT
1 ATAAAGGTTAAAATATGTCATAAGTATATGTACTTTTCACAAATTTACAATTTAGTCTTTACACT
* *
37775886 TTTATTTTCAAGAATTTAGTCCCTCTACTTTTCAGATTTGAAAA
66 TTTATTTTCAAGAACTAAGTCCCTCTACTTTTCAGATTTGAAAA
37775930 TCAAGTTCAA
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
109 100 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (109 bp):
ATAAAGGTTAAAATATGTCATAAGTATATGTACTTTTCACAAATTTACAATTTAGTCTTTACACT
TTTATTTTCAAGAACTAAGTCCCTCTACTTTTCAGATTTGAAAA
Found at i:37776196 original size:13 final size:14
Alignment explanation
Indices: 37776171--37776203 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
37776161 TTCTTTCCTT
37776171 AAAAATAATTTTTA
1 AAAAATAATTTTTA
*
37776185 TAAAAT-ATTTTTA
1 AAAAATAATTTTTA
37776198 AAAAAT
1 AAAAAT
37776204 CTATAAAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
AAAAATAATTTTTA
Found at i:37780309 original size:23 final size:23
Alignment explanation
Indices: 37780258--37780442 Score: 151
Period size: 23 Copynumber: 8.1 Consensus size: 23
37780248 TAAAGCTATC
* **
37780258 ACCCACCAAACACAACC-AATTT
1 ACCCTCCAAACACAACCAAACAT
* **
37780280 ACCCTCCAAACACAATCGTACAT
1 ACCCTCCAAACACAACCAAACAT
*
37780303 ACCCTCC-AACACAACCAAATAT
1 ACCCTCCAAACACAACCAAACAT
*
37780325 ACCCTCCAAACACAACCATATATAT
1 ACCCTCCAAACACAACCA-A-ACAT
* * * **
37780350 AACCTCCGAACATAACCAAGTAT
1 ACCCTCCAAACACAACCAAACAT
*
37780373 ACCCTCCAAACACAACC-AATAT
1 ACCCTCCAAACACAACCAAACAT
* *
37780395 ACCCTCCAAACAGAACCAAATAT
1 ACCCTCCAAACACAACCAAACAT
* * * *
37780418 AGCCTCCCAACACATCCAAATAT
1 ACCCTCCAAACACAACCAAACAT
37780441 AC
1 AC
37780443 AACCAAATAT
Statistics
Matches: 135, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
22 53 0.39
23 61 0.45
24 2 0.01
25 19 0.14
ACGTcount: A:0.44, C:0.38, G:0.03, T:0.16
Consensus pattern (23 bp):
ACCCTCCAAACACAACCAAACAT
Found at i:37780449 original size:45 final size:45
Alignment explanation
Indices: 37780263--37780442 Score: 186
Period size: 45 Copynumber: 4.0 Consensus size: 45
37780253 CTATCACCCA
* * ** *
37780263 CCAAACACAACC-AATTTACCCTCCAAACACAATCGTACATACCCT
1 CCAAACACAACCAAATATACCCTCCAAACACAACCAAATATA-CCT
37780308 CC-AACACAACCAAATATACCCTCCAAACACAACCATATATATAACCT
1 CCAAACACAACCAAATATACCCTCCAAACACAACCA-A-ATAT-ACCT
* * *
37780355 CCGAACATAACCAAGTATACCCTCCAAACACAACC-AATATACCCT
1 CCAAACACAACCAAATATACCCTCCAAACACAACCAAATATA-CCT
* * * *
37780400 CCAAACAGAACCAAATATAGCCTCCCAACACATCCAAATATAC
1 CCAAACACAACCAAATATACCCTCCAAACACAACCAAATATAC
37780443 AACCAAATAT
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
44 10 0.09
45 59 0.51
46 7 0.06
47 8 0.07
48 31 0.27
ACGTcount: A:0.44, C:0.37, G:0.03, T:0.16
Consensus pattern (45 bp):
CCAAACACAACCAAATATACCCTCCAAACACAACCAAATATACCT
Found at i:37782276 original size:16 final size:16
Alignment explanation
Indices: 37782231--37782276 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
37782221 ACCTTCAATT
37782231 TTCGTTAAAGTTTTTG
1 TTCGTTAAAGTTTTTG
*
37782247 TTCTTCTAAA-TTTTTG
1 TTCGT-TAAAGTTTTTG
37782263 TTCGTTAAAGTTTT
1 TTCGTTAAAGTTTT
37782277 AACGGGTGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 4 0.15
16 18 0.69
17 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.13, T:0.59
Consensus pattern (16 bp):
TTCGTTAAAGTTTTTG
Found at i:37782839 original size:21 final size:21
Alignment explanation
Indices: 37782787--37782839 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
37782777 CAGTCTGCTT
* * *
37782787 ACATGGTCGTGTATCTCAGTC
1 ACATGGTCGTGCACCTCAGCC
* *
37782808 ACACGGGCGTGCACCTCAGCC
1 ACATGGTCGTGCACCTCAGCC
*
37782829 GCATGGTCGTG
1 ACATGGTCGTG
37782840 TACCCCTGTC
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (21 bp):
ACATGGTCGTGCACCTCAGCC
Found at i:37785010 original size:447 final size:447
Alignment explanation
Indices: 37783881--37787061 Score: 5364
Period size: 447 Copynumber: 7.1 Consensus size: 447
37783871 GGAGGTCTCA
* *
37783881 AAATTTCTTATCTTGGTTTAGATTAATAAAGCTTTTCATAAGTTTAAAGAAAGTATTTTCAATTA
1 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
*
37783946 GATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTTATTATTATTTTGGACTCATAAAGT
66 GATTGTAATTATGTTATATGAACAGAGGTATGGG-TTTTTTATTATTATTTTGGACTCATAAAGT
* *
37784011 TTTGGGTTCTTAGTTTTGAATTAAAAACAATTATTTCATGCATGGGGTTAAGCTAACTGAAATG-
130 TTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAAATGC
* *
37784075 TAATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTCTGATTTTCAAACTAAAAAGAAAGG
195 T-ATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGG
*
37784140 TTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAATCTGTATTG
259 TTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAATCTGTTTTG
37784205 GTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAAT
324 GTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAAT
*
37784270 TCGTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAATGA
389 TCGTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAA-GG
* *
37784330 AAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCTTAAGTTTATAGAAAGTATTTTCAATTA
1 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
37784395 GATTGTAATTATGTTATATGAACTA-AGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGT
66 GATTGTAATTATGTTATATGAAC-AGAGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGT
*
37784459 TTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAATTGC
130 TTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAAATGC
* *
37784524 TATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGTTTTTCACACTAAGAAGAAAGGT
195 TATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGT
*
37784589 TTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACATCTAAATCTGTTTTGG
260 TTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAATCTGTTTTGG
* * *
37784654 TTACAATTTTAATACACGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATATTTGGAATT
325 TTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATT
* * * *
37784719 TGTAAGGTAAATTAGTACTGAATTTTGTTAAAAGCGAGCAAAGGTGATTTGAAACAGG
390 CGTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGG
* * *
37784777 AAATTTGTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATAA
1 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
* *
37784842 GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTGTTATTATTATTTTGGACACATAAAGTT
66 GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGTT
* * *
37784907 TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTTATTCATGGGTCTAAGCTAACTGAAATGCT
131 TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAAATGCT
*
37784972 ATTTTCGTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGTT
196 ATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGTT
* *
37785037 TTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCAAAATCTGTTTTGGC
261 TTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAATCTGTTTTGGT
* *
37785102 TACAAATTTAATACATGACCTGTTAATCTGGTTTTAAGTAATAATTAAACTAATGTTTGGAATTC
326 TACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTC
*
37785167 ATAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGG
391 GTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGG
* * * * *
37785224 AAATTTCTTATCTTGGTGTAGTTTAATAAAGCTTTTCATATGTTTATAGAAAGTATGTTCAATCA
1 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
* * *
37785289 GATTGTAATTATGTTATATGAACTGAGGTATGGGCTTTTTATTATTATTTTGGACACATAAAGTT
66 GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGTT
* * *
37785354 TTAGGTTCTTAGTTTTGAATTAAAAACAATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCT
131 TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAAATGCT
** *
37785419 ATTTTCTTTAAGTAATGTTCGTTCTAAAGGAACTGTTTATGATTTTCAAACTAAGAAAGAAAGGT
196 ATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAG-AAGAAAGGT
* *
37785484 TTTGACTTTACATTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAA-CGTGTTTTG
260 TTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAATC-TGTTTTG
* *
37785548 GTTACAATTTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAAAGTTTGGAAT
324 GTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAAT
*
37785613 TCGTAAGGTAAATTACTACTGAATTTTGTTAAAAACGAGCAAAGGTGGTTTGAAAAAGG
389 TCGTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGG
37785672 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
1 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
*
37785737 GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTCATTATTATTTTGGACTCATAAAGTT
66 GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGTT
* *
37785802 TTGGGTTCTTAGTTTTGAATTACAAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCT
131 TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAAATGCT
** *
37785867 ATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATGATTGTCAAACTAAGAAGAAAGGTT
196 ATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGTT
*
37785932 TTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCAAAATCTGTTTTGGT
261 TTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAATCTGTTTTGGT
* *
37785997 AACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAAAGTTTGGAATTC
326 TACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTC
*
37786062 GTAAGGTAAATTACTACTGAATTTTGTTAAAAACGAGCAAAGGTGGTTTGAAAAAGG
391 GTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGG
37786119 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
1 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
* * * *
37786184 GATTGTAATTATGTTATATGAACTGAGGTACGGATTTTTTATTATTATTTTAGACTCATAAAGTT
66 GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGTT
*
37786249 TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCGTGGGTTTAAGCTAACTGAAATGCT
131 TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAAATGCT
* *
37786314 ATTTTCATTAACAAATGTTCGTTCTAAAGTCACTGTTTATGATTTTCAAACTAAGAAGAAAGGTT
196 ATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGTT
*
37786379 TTGATTTTACGTTGCAAATTTTGGATTGGAACTTCGGTTAACAAAACTT-TGAAATCTGTTTTGG
261 TTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCT-AAATCTGTTTTGG
*
37786443 TTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATCATTAAACTAATGTTTGGAATT
325 TTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATT
*
37786508 CGTAAGGTAAATTACTGCTGAATTTTGTTAAAA-CGAGCAAAGGTGGTTTGAAAAAGG
390 CGTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGG
* * *
37786565 AAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCATATGTTTATAGAAAGTATGTTCAATTA
1 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
* * *
37786630 GATTGTAATTATGTTATATGAACAGAGGTATTGATTTTTTATTATTATTTTGGACACATAAAGTT
66 GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGTT
* * *
37786695 TTAGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTGAAGCAAACTGAAATGCT
131 TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAAATGCT
** *
37786760 ATTTTCTTTAAGTAATGTTCGTTATAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGGT
196 ATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAG-AAGAAAGGT
* *
37786825 TTTGAGTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCGAAATCTGTTTTGG
260 TTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAATCTGTTTTGG
*
37786890 TTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAAATAATGTTTGGAATT
325 TTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATT
* * ** *
37786955 CGTAGGGTAAATTACTGCTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGTCAATGG
390 CGTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGG
* * * *
37787013 AAATTTCTTATATTGGTTTAGGTTAAGAAAGCCTTTCATATGTTTATAG
1 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAG
37787062 NNNNNNNNNN
Statistics
Matches: 2582, Mismatches: 140, Indels: 21
0.94 0.05 0.01
Matches are distributed among these distances:
446 258 0.10
447 1411 0.55
448 818 0.32
449 95 0.04
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.41
Consensus pattern (447 bp):
AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGTT
TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAAATGCT
ATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGTT
TTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAATCTGTTTTGGT
TACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTC
GTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGG
Found at i:37785714 original size:895 final size:893
Alignment explanation
Indices: 37783881--37787061 Score: 5391
Period size: 895 Copynumber: 3.6 Consensus size: 893
37783871 GGAGGTCTCA
* *
37783881 AAATTTCTTATCTTGGTTTAGATTAATAAAGCTTTTCATAAGTTTAAAGAAAGTATTTTCAATTA
1 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
* *
37783946 GATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTTATTATTATTTTGGACTCATAAAGT
66 GATTGTAATTATGTTATATGAACAGAGGTATGGG-TTTTTTATTATTATTTTGGACACATAAAGT
* *
37784011 TTTGGGTTCTTAGTTTTGAATTAAAAACAATTATTTCATGCATGGGGTTAAGCTAACTGAAATG-
130 TTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCAT-GGGTTAAGCAAACTGAAATGC
* *
37784075 TAATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTCTGATTTTCAAACTAAAAAGAAAGG
194 T-ATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGG
* *
37784140 TTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAATCTGTATTG
258 TTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCAAAATCTGTTTTG
37784205 GTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAAT
323 GTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAAT
*
37784270 TCGTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAATGAAAATT
388 TCGTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAA-GGAAATT
* *
37784335 TCTTATCTTGGTTTAGTTTAATAAAGCTTTTCTTAAGTTTATAGAAAGTATTTTCAATTAGATTG
452 TCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTG
*
37784400 TAATTATGTTATATGAACTAAGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGTTTTGGG
517 TAATTATGTTATATGAACTGAGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGTTTTGGG
*
37784465 TTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAATTGCTATTTT
582 TTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAAATGCTATTTT
* *
37784530 CTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGTTTTTCACACTAAGAAGAAAGGTTTTGAT
647 CTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGTTTTGAT
*
37784595 TTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACATCTAAATCTGTTTTGGTTACAA
712 TTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAATCTGTTTTGGTTACAA
* *
37784660 TTTTAATACACGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATA-TTTGGAATTTGTAA
777 TTTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAA-AGTTTGGAATTCGTAA
* * * *
37784724 GGTAAATTAGTACTGAATTTTGTTAAAAGCGAGCAAAGGTGATTTGAAACAGG
841 GGTAAATTACTACTGAATTTTGTTAAAAACGAGCAAAGGTGGTTTGAAAAAGG
* * *
37784777 AAATTTGTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATAA
1 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
*
37784842 GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTGTTATTATTATTTTGGACACATAAAGTT
66 GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGTT
* * *
37784907 TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTTATTCATGGGTCTAAGCTAACTGAAATGCT
131 TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGT-TAAGCAAACTGAAATGCT
*
37784972 ATTTTCGTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGTT
195 ATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGTT
*
37785037 TTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCAAAATCTGTTTTGGC
260 TTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCAAAATCTGTTTTGGT
* *
37785102 TACAAATTTAATACATGACCTGTTAATCTGGTTTTAAGTAATAATTAAACTAATGTTTGGAATTC
325 TACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTC
*
37785167 ATAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCT
390 GTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCT
* * * * *
37785232 TATCTTGGTGTAGTTTAATAAAGCTTTTCATATGTTTATAGAAAGTATGTTCAATCAGATTGTAA
455 TATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAA
* * *
37785297 TTATGTTATATGAACTGAGGTATGGGCTTTTTATTATTATTTTGGACACATAAAGTTTTAGGTTC
520 TTATGTTATATGAACTGAGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGTTTTGGGTTC
* *
37785362 TTAGTTTTGAATTAAAAACAATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCTATTTTCTT
585 TTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAAATGCTATTTTCTT
** * *
37785427 TAAGTAATGTTCGTTCTAAAGGAACTGTTTATGATTTTCAAACTAAGAAAGAAAGGTTTTGACTT
650 TAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAG-AAGAAAGGTTTTGATTT
*
37785492 TACATTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAA-CGTGTTTTGGTTACAAT
714 TACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAATC-TGTTTTGGTTACAAT
37785556 TTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAAAGTTTGGAATTCGTAAGG
778 TTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAAAGTTTGGAATTCGTAAGG
37785621 TAAATTACTACTGAATTTTGTTAAAAACGAGCAAAGGTGGTTTGAAAAAGG
843 TAAATTACTACTGAATTTTGTTAAAAACGAGCAAAGGTGGTTTGAAAAAGG
37785672 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
1 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
* *
37785737 GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTCATTATTATTTTGGACTCATAAAGTT
66 GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGTT
*
37785802 TTGGGTTCTTAGTTTTGAATTACAAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCT
131 TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGG-TTAAGCAAACTGAAATGCT
** *
37785867 ATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATGATTGTCAAACTAAGAAGAAAGGTT
195 ATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGTT
37785932 TTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCAAAATCTGTTTTGGT
260 TTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCAAAATCTGTTTTGGT
* *
37785997 AACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAAAGTTTGGAATTC
325 TACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTC
*
37786062 GTAAGGTAAATTACTACTGAATTTTGTTAAAAACGAGCAAAGGTGGTTTGAAAAAGGAAATTTCT
390 GTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCT
37786127 TATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAA
455 TATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAA
* * *
37786192 TTATGTTATATGAACTGAGGTACGGATTTTTTATTATTATTTTAGACTCATAAAGTTTTGGGTTC
520 TTATGTTATATGAACTGAGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGTTTTGGGTTC
* *
37786257 TTAGTTTTGAATTAAAAACTATTATTTCATGCGTGGGTTTAAGCTAACTGAAATGCTATTTTCAT
585 TTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAAATGCTATTTTCTT
*
37786322 TAACAAATGTTCGTTCTAAAGTCACTGTTTATGATTTTCAAACTAAGAAGAAAGGTTTTGATTTT
650 TAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGTTTTGATTTT
* *
37786387 ACGTTGCAAATTTTGGATTGGAACTTCGGTTAACAAAACTT-TGAAATCTGTTTTGGTTACAAAT
715 ACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCT-AAATCTGTTTTGGTTACAATT
* *
37786451 TTAATACATGAGCTGTTAATCTGGTTTTAAGTGATCATTAAACTAATGTTTGGAATTCGTAAGGT
779 TTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAAAGTTTGGAATTCGTAAGGT
*
37786516 AAATTACTGCTGAATTTTGTT-AAAACGAGCAAAGGTGGTTTGAAAAAGG
844 AAATTACTACTGAATTTTGTTAAAAACGAGCAAAGGTGGTTTGAAAAAGG
* * *
37786565 AAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCATATGTTTATAGAAAGTATGTTCAATTA
1 AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
* *
37786630 GATTGTAATTATGTTATATGAACAGAGGTATTGATTTTTTATTATTATTTTGGACACATAAAGTT
66 GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGTT
*
37786695 TTAGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTGAAGCAAACTGAAATGCT
131 TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTT-AAGCAAACTGAAATGCT
** *
37786760 ATTTTCTTTAAGTAATGTTCGTTATAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGGT
195 ATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAG-AAGAAAGGT
* *
37786825 TTTGAGTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCGAAATCTGTTTTGG
259 TTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCAAAATCTGTTTTGG
*
37786890 TTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAAATAATGTTTGGAATT
324 TTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATT
* * ** *
37786955 CGTAGGGTAAATTACTGCTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGTCAATGGAAATTTC
389 CGTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTC
* * * *
37787020 TTATATTGGTTTAGGTTAAGAAAGCCTTTCATATGTTTATAG
454 TTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAG
37787062 NNNNNNNNNN
Statistics
Matches: 2156, Mismatches: 119, Indels: 22
0.94 0.05 0.01
Matches are distributed among these distances:
892 2 0.00
893 265 0.12
894 628 0.29
895 1165 0.54
896 96 0.04
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.41
Consensus pattern (893 bp):
AAATTTCTTATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTA
GATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGTT
TTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTAAGCAAACTGAAATGCTA
TTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGTTT
TGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCAAAATCTGTTTTGGTT
ACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTCG
TAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTT
ATCTTGGTTTAGGTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAAT
TATGTTATATGAACTGAGGTATGGGTTTTTTATTATTATTTTGGACTCATAAAGTTTTGGGTTCT
TAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCTAACTGAAATGCTATTTTCTTT
AACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAGAAAGGTTTTGATTTTA
CGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTAAATCTGTTTTGGTTACAATTTT
AATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAACTAAAGTTTGGAATTCGTAAGGTAA
ATTACTACTGAATTTTGTTAAAAACGAGCAAAGGTGGTTTGAAAAAGG
Found at i:37788316 original size:447 final size:443
Alignment explanation
Indices: 37787471--37788600 Score: 1839
Period size: 447 Copynumber: 2.5 Consensus size: 443
37787461 NNNNNNNNNN
* *
37787471 TTGGTTTAGTTTAATAAAGCTTTTCATAAGTTTATAGAATGTATTTTGAATTAGATTGTAATTAT
1 TTGGTTTAGTTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAATTAT
*
37787536 GTTATATGAACAGAGGTATGAGTTTTTTATTATTATTTTGGACACATAAAGTTTTGGGTTCTTAG
66 GTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGTTTTGGGTTCTTAG
* *
37787601 TTTTGAATTAATAACTATTATATTATTCATGGGTTTAAGCTAACTGAAATGCTATTTTCGTTAAC
131 TTTTGAATTAA-AACTATTAT-TTATGCATGGGTTTAAGCTAACTGAAATGCTATTTTCATTAAC
*
37787666 AAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTCAAAAGAAAGGTTTTGATTTTACGT
194 AAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACT-AAAAGAAAGCTTTTGATTTTACGT
37787731 TGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACATCAAAATCTGTTTTGGTTACAAATTTAAT
258 TGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACATCAAAATCTGTTTTGGTTACAAATTTAAT
* * * * *
37787796 ACATGAGTTGTTAATTTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTCGTTAGGTAAATT
323 ACACGAGCTGTTAATCTAGTTTTAAGTGATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATT
*
37787861 ACTACTGAATTTTGTGAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATC
388 ACTACTGAATTTTGTGAAAA-CGAGCAAAGGTGATTTGAAAAAGGAAATTTCTTATC
* * *
37787918 TTGGTGTAGTTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATGAGATTGCAATTAT
1 TTGGTTTAGTTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAATTAT
* * * *
37787983 GATATATGAACTGAGGTATGGGTTTATTATTATTATTTTGGACTCATAAAGTTTTGGGTTCTTAG
66 GTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGTTTTGGGTTCTTAG
* * *
37788048 TTTTGAATTACAAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAG
131 TTTTGAATTA-AAACTATTATTT-ATGCATGGGTTTAAGCTAACTGAAATGCTATTTTCATTAAC
* *
37788113 TAATGTTCGTTCTAAAGTAACTGTTTATGATTGTCAAACTAAGAAGAAAGCTTTTGATTTTACGT
194 AAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAA-AAGAAAGCTTTTGATTTTACGT
* * *
37788178 TGCAAATTTTGGTTTGGAACTTCGGTTAACAAAATATCTAAATCTGTTTTGGTTACAATTTTAAT
258 TGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACATCAAAATCTGTTTTGGTTACAAATTTAAT
*
37788243 ACACGAGCTGTTAATCTAGTTTTAAGTGATAATTAAATTAATGTTTGGAATTTC-TAAGGTAAAT
323 ACACGAGCTGTTAATCTAGTTTTAAGTGATAATTAAACTAATGTTTGGAA-TTCGTAAGGTAAAT
* * * *
37788307 TAGTACTGAATTTTGTTAAAACGAGCTAAGGTGATTTGAAACAGGAAATTTCTTATC
387 TACTACTGAATTTTGTGAAAACGAGCAAAGGTGATTTGAAAAAGGAAATTTCTTATC
37788364 TTGGTTTAGTTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAATTAT
1 TTGGTTTAGTTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAATTAT
*
37788429 GTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGTTTTGGGTTCTTGG
66 GTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGTTTTGGGTTCTTAG
*
37788494 TTTTGAATTAAAAACTATTATTTAATGCAAGGGTTTAAGCTAACTGAAATGCTATTTTTCATTAA
131 TTTTGAATT-AAAACTATTATTT-ATGCATGGGTTTAAGCTAACTGAAATGCTA-TTTTCATTAA
*
37788559 CAAATGTTCGTTCTAAAGTAAGTGTTTATGATTTTCAAACTA
193 CAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTA
37788601 NNNNNNNNNN
Statistics
Matches: 630, Mismatches: 47, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
446 208 0.33
447 418 0.66
448 4 0.01
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.42
Consensus pattern (443 bp):
TTGGTTTAGTTTAATAAAGCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAATTAT
GTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGTTTTGGGTTCTTAG
TTTTGAATTAAAACTATTATTTATGCATGGGTTTAAGCTAACTGAAATGCTATTTTCATTAACAA
ATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAAAGAAAGCTTTTGATTTTACGTTGC
AAATTTTGGTTTGGAACTTCGGTTAACAAAACATCAAAATCTGTTTTGGTTACAAATTTAATACA
CGAGCTGTTAATCTAGTTTTAAGTGATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACT
ACTGAATTTTGTGAAAACGAGCAAAGGTGATTTGAAAAAGGAAATTTCTTATC
Found at i:37791757 original size:293 final size:295
Alignment explanation
Indices: 37791229--37791776 Score: 983
Period size: 293 Copynumber: 1.9 Consensus size: 295
37791219 NNNNNNNNNN
37791229 GAAATGCTATTTTCATTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAA
1 GAAATGCTATTTTCATTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAA
* *
37791294 AGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCAAAATC
66 AGAAAGGTTTTGATTTTACGTTGCAAATTTTGGATTGGAACTTCGGTTAACAAAACTTCAAAATA
* *
37791359 TATTTTGGTAACAAATTTAGTACATGAGCTGTTAATCTGGTTTTAACTGATAATTAAACTAAAGT
131 TATTTTGGTAACAAATTTAATACATGAGCTGTTAATCTGGTTTTAACTGATAATTAAAATAAAGT
37791424 TTAGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAAAA-CGAGCAAAGGTGGTTTGAATTAA
196 TTAGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAATTAA
37791488 AAAACTATTATTTCATGCGTGGGTTTAAGCTAACT
261 AAAACTATTATTTCATGCGTGGGTTTAAGCTAACT
37791523 GAAATGCTATTTTCATTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAG-A
1 GAAATGCTATTTTCATTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAA
*
37791587 AGAAAGGTTTTGATTTTACGTTGCAAATTTTGGATTGGAACTTCGGTTAACAAAACTTCGAAATA
66 AGAAAGGTTTTGATTTTACGTTGCAAATTTTGGATTGGAACTTCGGTTAACAAAACTTCAAAATA
* * * *
37791652 TGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGATAATTAAAATAATGT
131 TATTTTGGTAACAAATTTAATACATGAGCTGTTAATCTGGTTTTAACTGATAATTAAAATAAAGT
* *
37791717 TTGGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAAAAGCGAGCTAAGGTGGTTTGA
196 TTAGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGA
37791777 CAAAGGAAAT
Statistics
Matches: 242, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
293 162 0.67
294 80 0.33
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (295 bp):
GAAATGCTATTTTCATTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAA
AGAAAGGTTTTGATTTTACGTTGCAAATTTTGGATTGGAACTTCGGTTAACAAAACTTCAAAATA
TATTTTGGTAACAAATTTAATACATGAGCTGTTAATCTGGTTTTAACTGATAATTAAAATAAAGT
TTAGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGAATTAA
AAAACTATTATTTCATGCGTGGGTTTAAGCTAACT
Found at i:37793912 original size:448 final size:448
Alignment explanation
Indices: 37791967--37794064 Score: 3452
Period size: 447 Copynumber: 4.7 Consensus size: 448
37791957 NNNNNNNNNN
* * **
37791967 AAACAATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTT
1 AAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCTATTTTCATTAACAAATGTTCGTT
* *
37792032 CTAAAGGAACTGTTTATGATTTTCAAACTAAGAAAGAAAGGTTTTGACTTTACATTGCAAATTTT
66 CTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACATTGCAAATTTT
* * * *
37792097 GGTTTGGAACTTCGGTTAACAAAACTTCTAAATCTGTTTTAGTTACAATTTTAATACACGAGCTG
131 GGTTTGGAACTTCGGTTAACAAAACTTCGAAATCTGTTTTGGTTACAAATTTAATACATGAGCTG
* * * *
37792162 TTAATCTGGTTTTACGTAATTATTAAACTAATGTTTGGAATTCGTAA-GTAAATTACTACTGAAT
196 TTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAAT
* *
37792226 TTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTTGTTTAGTTTAATAAA
261 TTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGGTTAATAAA
* * *
37792291 GCTTTTTATAAGTTTATAGAATGTATTTTCAATTAGATTGTTATTATGTTATATGAACAGAGGTA
326 GCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACAGAGGTA
37792356 TGGGTTTTTTATTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAA
391 TGGGTTTTTTATTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAA
* * ** *
37792414 AAACAATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCCTT
1 AAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCTATTTTCATTAACAAATGTTCGTT
37792479 CTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACATTGCAAATTTT
66 CTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACATTGCAAATTTT
* * * **
37792544 GGTTTGGAACTTCGGTTAACAAAACTTCTAAATCTGTTTTGATTACAAATTTAATTCCCGAGCTG
131 GGTTTGGAACTTCGGTTAACAAAACTTCGAAATCTGTTTTGGTTACAAATTTAATACATGAGCTG
* *
37792609 TTGATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTCGTAA-GTAAATTACTACTGAAT
196 TTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAAT
* * * *
37792673 TTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAATGGAAATTTCTTATCTTGGTTTAGTTTCATCAA
261 TTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGGTTAATAAA
* *
37792738 GCTTTTCATAAGTTTATAGAATGTATTTTGAATTAGATTGTAATTATGTTATATGAACAGAGGTA
326 GCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACAGAGGTA
* * *
37792803 TGAGTTTTTTATTATTATTTGGGACACATAAAGTTTTGGGTTCTTTGTTTTGAATTAA
391 TGGGTTTTTTATTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAA
37792861 AAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCTATTTTCATTAACAAATGTTCGTT
1 AAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCTATTTTCATTAACAAATGTTCGTT
* *
37792926 CTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGATTTTGATTTTACTTTGCAAATTTT
66 CTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACATTGCAAATTTT
* *
37792991 GGTTTGGAACTTCGGTTAACAAAACTTCAAAATCTGTTTTGGTAACAAATTTAATACATGAGCTG
131 GGTTTGGAACTTCGGTTAACAAAACTTCGAAATCTGTTTTGGTTACAAATTTAATACATGAGCTG
*
37793056 TTAATCTGGTTTTAAGTGATCATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAAT
196 TTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAAT
37793121 TTTGTTAAAA-CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGGTTAATAAA
261 TTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGGTTAATAAA
* * *
37793185 TCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAATTCTGTTATATGAACTGAGGTA
326 GCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACAGAGGTA
** *
37793250 TGGGTTTTTTATTATTATTTCAGACTCATAAAGTTTTGGGTTCTTAGTTTTGAATTAA
391 TGGGTTTTTTATTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAA
* * *
37793308 AAACTATTATTTCATGCGTGGGTTTAAGCTAACTGAAATTCTATTTTCATTAACAAATGTTCGTT
1 AAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCTATTTTCATTAACAAATGTTCGTT
* * *
37793373 CTAAAGTCACTGTTTATGATTTTCAAACTAAGAAA-AAAGGTTTCGATTTTACGTTGCAAATTTT
66 CTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACATTGCAAATTTT
*
37793437 GGTTTGGAACTTCGGGTAACAAAACTTCGAAATCTGTTTTGGTTACAAATTTAATACATGAGCTG
131 GGTTTGGAACTTCGGTTAACAAAACTTCGAAATCTGTTTTGGTTACAAATTTAATACATGAGCTG
* *
37793502 TTAATCTGGTTTTAAGTGATAATTAAAATAATGTTTGGAATACGTAAGGTAAATTACTGCTGAAT
196 TTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAAT
* * *
37793567 TTTGTTAAAAGCGATCAAAGGTGGTTTGACAAAGGAAATTTCTTATATTGGTTTAGGTTAATAAA
261 TTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGGTTAATAAA
* * * *
37793632 GCTTTTCATATGTTTAAAGAAAGTATGTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTA
326 GCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACAGAGGTA
*
37793697 TGGGTTTTTTATTATTATTTTGGACACATGAAGTTTTGGGTTCTTAGTTTTGAATTAAA
391 TGGGTTTTTTATTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATT-AA
* *
37793756 AAACTATTATTTCATGCGTGGGTTTAAGCTAACTGAAATGCTATTTTCATTAACAAATGTTCGTT
1 AAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCTATTTTCATTAACAAATGTTCGTT
* *
37793821 CTAAAGTCACTGTTTATGATTTTCAAACTAAG-AAGAAAGGTTTTGATTTTACGTTGCAAATTTT
66 CTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACATTGCAAATTTT
* *
37793885 GGATTGGAACTTCGGTTAACAAAACTTCGAAATCTGTTTTGGTGACAAATTTAATACATGAGCTG
131 GGTTTGGAACTTCGGTTAACAAAACTTCGAAATCTGTTTTGGTTACAAATTTAATACATGAGCTG
* *
37793950 TTAATCTGGTTTTAAGTGATAATTAAACTAAAGTTTGGAATTCGTAAGGTCAATTACTGCTGAAT
196 TTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAAT
*
37794015 TTTGTTAAAA-CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATATTGG
261 TTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGG
37794065 NNNNNNNNNN
Statistics
Matches: 1559, Mismatches: 88, Indels: 8
0.94 0.05 0.00
Matches are distributed among these distances:
446 160 0.10
447 1114 0.71
448 285 0.18
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.40
Consensus pattern (448 bp):
AAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGCTATTTTCATTAACAAATGTTCGTT
CTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACATTGCAAATTTT
GGTTTGGAACTTCGGTTAACAAAACTTCGAAATCTGTTTTGGTTACAAATTTAATACATGAGCTG
TTAATCTGGTTTTAAGTGATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAAT
TTTGTTAAAAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGGTTAATAAA
GCTTTTCATAAGTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACAGAGGTA
TGGGTTTTTTATTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAA
Found at i:37799269 original size:447 final size:448
Alignment explanation
Indices: 37798431--37799399 Score: 1692
Period size: 447 Copynumber: 2.2 Consensus size: 448
37798421 NNNNNNNNNN
*
37798431 GTTTTAAGTGATAATTAAAATAATGTTTGGAATACGTAAGGTAAATTACTGCTGAATTTTGTTAA
1 GTTTTAAGTGATAATTAAAATAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAA
* *
37798496 AAGCGATCAAAGGTGGTTTGACAAAGGAAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCA
66 AAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCA
*
37798561 TATGTTTATAGAAAGTATGTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTT
131 TAAGTTTATAGAAAGTATGTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTT
* *
37798626 TTATTATTATTTTGGACACATGAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCAT
196 TTATTATTATTTTAGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCAT
* *
37798691 GCATGGGTTTAAGCAAACTGAAATGCTATTTTCATTCACAAATGTTCGTTCTACAGTAACTGTTT
261 GCATGGGTTTAAGCAAACTGAAATGCTATTTTCATTAACAAATGTTCGTTCTAAAGTAACTGTTT
37798756 ATGATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTAGGAAATTCGG
326 ATGATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTAGGAAATTCGG
*
37798821 TTAACAAAACTTCAAAATCTGTTTTGGTAACAAATTTAGTACATGAGCTGTTAATCTG
391 TTAACAAAACTTCAAAATCTGTTTTGGTAACAAATTTAATACATGAGCTGTTAATCTG
* *
37798879 GTTTTAAGTGATAATTAAACTAAAGTTTGGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAA
1 GTTTTAAGTGATAATTAAAATAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAA
* *
37798944 AA-CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGGTTAATAAATCTTTTCA
66 AAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCA
37799008 TAAGTTTATAGAAAGTATGTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTT
131 TAAGTTTATAGAAAGTATGTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTT
* *
37799073 TTATTATTATTTTAGACTCATAAAGTTTTGGGTTCTTGGTTTTGAATTAAAAAACTATTATTTCA
196 TTATTATTATTTTAGACACATAAAGTTTTGGGTTCTTAGTTTTGAATT-AAAAACTATTATTTCA
* * *
37799138 TGCGTGGGTTTAAGCTAACTGAAATGCTATTTTCATTAACAAATGTTCGTTCTAAAGTAAGTGTT
260 TGCATGGGTTTAAGCAAACTGAAATGCTATTTTCATTAACAAATGTTCGTTCTAAAGTAACTGTT
*
37799203 TATGATTTTCAAACTAAG-AAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGATT-GGAACTTC
325 TATGATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGG-TTAGGAAATTC
* * *
37799266 GGTTAACAAAACTTCGAAATCTGTTTTGGTTACAAATTTAATATATGAGCTGTTAATCTG
389 GGTTAACAAAACTTCAAAATCTGTTTTGGTAACAAATTTAATACATGAGCTGTTAATCTG
*
37799326 GTTTTAAGTGATAATTAAAATAATGTTTGGAATTCGTATGGTAAATTACTGCTGAATTTTGTTAA
1 GTTTTAAGTGATAATTAAAATAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAA
37799391 AAGCGAGCA
66 AAGCGAGCA
37799400 NNNNNNNNNN
Statistics
Matches: 493, Mismatches: 25, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
447 327 0.66
448 166 0.34
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (448 bp):
GTTTTAAGTGATAATTAAAATAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAA
AAGCGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCA
TAAGTTTATAGAAAGTATGTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTT
TTATTATTATTTTAGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCAT
GCATGGGTTTAAGCAAACTGAAATGCTATTTTCATTAACAAATGTTCGTTCTAAAGTAACTGTTT
ATGATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTAGGAAATTCGG
TTAACAAAACTTCAAAATCTGTTTTGGTAACAAATTTAATACATGAGCTGTTAATCTG
Found at i:37804724 original size:447 final size:448
Alignment explanation
Indices: 37803890--37804843 Score: 1581
Period size: 447 Copynumber: 2.1 Consensus size: 448
37803880 NNNNNNNNNN
* *
37803890 GAAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCATAAGTATATAGAAAGTATGTTCAATT
1 GAAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCATAATTTTATAGAAAGTATGTTCAATT
*
37803955 AGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGT
66 AGATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGT
*
37804020 TTTAGGTTCTTAGTTTTGAATTAAAAACTATTTTTTCATGCATGGGTTTAAGCAAACTGAAATGC
131 TTTAGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGC
* **
37804085 TATTTTCTTTAAGTAATGTTCCTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGG
196 TATTTTCATTAACAAATGTTCCTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGG
* **
37804150 TTTTGATTTTACATTGCAAATTTTGGTTTGGAACTTCGGTTAACAAAACTTCTTAATCTATTTTG
261 TTTTGATTTTACATTGCAAATTTTGGGTTGGAACTTCGGTTAACAAAACTTCAAAATCTATTTTG
* * * * * *
37804215 ATTACAAATTTAATTCACGAGCTGTTGATCTGGTTTTAAGTGATCATTAAACTAATGTTTGGAAT
326 ATAACAAATTTAATACACGAGCTGTTAATCTGGTTTTAAGAGATAATTAAAATAATGTTTGGAAT
*
37804280 TCGTAA-GTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGA-AATGG
391 TCGTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGACAA-AG
* * * * *
37804337 GAAATTTTTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAATTTTATAGAATGTATTTTCAATT
1 GAAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCATAATTTTATAGAAAGTATGTTCAATT
37804402 AGATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGT
66 AGATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGT
*
37804467 TTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGC
131 TTTAGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGC
*
37804532 TATTTTCATTAACAAATGTTCGTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGG
196 TATTTTCATTAACAAATGTTCCTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGG
* * *
37804597 TTTTGATTTTACGTTGCAAATTTTGGGTTGGAACTTCGGTTAACAGAACTTCAAAATCTGTTTTG
261 TTTTGATTTTACATTGCAAATTTTGGGTTGGAACTTCGGTTAACAAAACTTCAAAATCTATTTTG
* *
37804662 GTAACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGAGATAATTAAAATAATGTTTGGAAT
326 ATAACAAATTTAATACACGAGCTGTTAATCTGGTTTTAAGAGATAATTAAAATAATGTTTGGAAT
* * *
37804727 TCGTAAGGTAAATTACTGCTGAATTTTGTTAAAAGCTATCAAAGGTGGTTTGACAAAG
391 TCGTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGACAAAG
37804785 GAAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCAT-ATGTTTATAGAAAGTATGT
1 GAAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCATAAT-TTTATAGAAAGTATGT
37804844 NNNNNNNNNN
Statistics
Matches: 467, Mismatches: 37, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
447 370 0.79
448 95 0.20
449 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (448 bp):
GAAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCATAATTTTATAGAAAGTATGTTCAATT
AGATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTATTATTATTTTGGACACATAAAGT
TTTAGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCATGGGTTTAAGCAAACTGAAATGC
TATTTTCATTAACAAATGTTCCTTCTAAAGTAACTGTTTATGATTTTCAAACTAAGAAAGAAAGG
TTTTGATTTTACATTGCAAATTTTGGGTTGGAACTTCGGTTAACAAAACTTCAAAATCTATTTTG
ATAACAAATTTAATACACGAGCTGTTAATCTGGTTTTAAGAGATAATTAAAATAATGTTTGGAAT
TCGTAAGGTAAATTACTACTGAATTTTGTTAAAAGCGAGCAAAGGTGGTTTGACAAAG
Found at i:37809333 original size:447 final size:447
Alignment explanation
Indices: 37807566--37812066 Score: 6499
Period size: 447 Copynumber: 10.1 Consensus size: 447
37807556 NNNNNNNNNA
* * *
37807566 CGAGCAAAGGTGGTTTGAAAAAGGAATTTTCTTATCTTGGTTTAGGTTAATAAATCTTTTCATAA
1 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
* * * *
37807631 GTTTATAGAAAGTATGTTCAATTAGATTGTAATTCTGTTATATGAACCGAGGTCTGGGTTTTTTA
66 GTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
* * * *
37807696 TTATTATTTCGGACTCATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCAAGCG
131 TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
* * ** *
37807761 TGGGTTTAAGCTAACTGAAATGCTATTTTCATTAACAAATGTTCGTTCTAAAGTCACTGTTTATG
196 TGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATG
* * * *
37807826 ATTTTCAAACTAAGAAGAAATGTTTTAATTTTACGTTTCAAATTTTGGATTGGAACTTCGGTTAA
261 ATTTTCAAACTAAGAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAA
* *
37807891 CAAAACTTCGAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGAGA
326 CAAAACTTCTAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGA
* *
37807956 TAATTAAATTAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAAAAG
391 TAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTACTGAATTTTGTTAAAAG
* * * * *
37808013 CGATCAAAGGTGGTTTGACAAAGGAAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCATAT
1 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
*
37808078 GTTTATAGAAAGTATGTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
66 GTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
*
37808143 TTATTATTTTGGACACATAAAGTTTTAGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
131 TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
* *
37808208 TGGGTTGAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTATAAAGTAACTGTTTATG
196 TGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATG
37808273 ATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTA
261 ATTTTCAAACTAAG-AAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTA
* * *
37808338 ACAAAACTTCGAAATCTGTTTTCGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTT
325 ACAAAACTTCTAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTG
*
37808403 ATAATTAAAATAATGTTTGGAATTCGTAAGGTAAATTAC-AGCTGAATTTTGTTAAAAG
390 ATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTA-CTGAATTTTGTTAAAAG
* * * * * * *
37808461 CGAGCAAAGGTGCTTTGAGAAAGGAAATTTCTTATATTGGTTTAGGTTAAGAAAGCCTTTCATAT
1 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
*
37808526 GTTTATAGAAAGTATGTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
66 GTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
*
37808591 TTATTATTTTGGACACATAAAGTTTTAGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
131 TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
* ****************************************
37808656 TGGGTTGAAGCAAACTGAAATGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
196 TGGGTTTAAGCAAACTGAAATGCT-ATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTAT
*****************************************************************
37808721 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
260 GATTTTCAAACTAAGAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTA
** * * ** *
37808786 NNAAAACTTCTAAATCTGTTTTGATTACAAATTTAATTCCCGAGCTGTTGATCTGGTTTTAAGTG
325 ACAAAACTTCTAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTG
*
37808851 GTAATTAAACTAATGTTTGGAATTCGTAA-GTAAATTACTACTGAATTTTGTTAAAAG
390 ATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTACTGAATTTTGTTAAAAG
37808908 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
1 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
* * * *
37808973 GTTTATAGAATGTATTTTCAATTAGATTGCACTTATGTTATATGAACAGAGGTATGGGTTTTTTA
66 GTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
* *
37809038 TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAATTTTGAATTAAAAACTATTATTTCATGCT
131 TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
* * **
37809103 TGGGTTAAAGCTAACTGAAATGCTATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATG
196 TGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATG
37809168 ATTTTCAAACTAAGAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAA
261 ATTTTCAAACTAAGAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAA
* * * * *
37809233 AAAAACTTCGAAATATGTTTTGGTTGCAAATTTAATGCATGAGCTGTTAATCTGGTTTTAAGTGA
326 CAAAACTTCTAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGA
* *
37809298 TAATTAAAATAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAAAAG
391 TAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTACTGAATTTTGTTAAAAG
* * * *
37809355 CGAGCAAAGGTGGTTTGACAAAGGAAATTTCTTATATTGGTTTAGGTTAATAAAGCTTTTCATAT
1 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
*
37809420 GTTTATAGAAAGTATGTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
66 GTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
*
37809485 TTATTATTTTGGACACATAAAGTTTTAGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
131 TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
*
37809550 TGGGTTGAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATG
196 TGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATG
*
37809615 ATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACATTGCAAATTTTGGTTTGGAACTTCGGTTA
261 ATTTTCAAACTAAG-AAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTA
* * * * * *
37809680 ACAAAACTTCTAAATCTATTTTGATTACAACTTTAATTCACGAGCTGTTGATCTGGTTTTAAGTG
325 ACAAAACTTCTAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTG
*
37809745 ATAATTAAACTAATGTTTAGAATTCGTAA-GTAAATTACTACTGAATTTTGTTAAAAG
390 ATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTACTGAATTTTGTTAAAAG
37809802 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
1 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
* * * *
37809867 GTTTATAGAATGTATTTTCAATTAGATTGCACTTATGTTATATGAACAGAGGTATGGGTTTTTTA
66 GTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
*
37809932 TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCT
131 TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
* **
37809997 TGGGTTTAAGCTAACTGAAATGCTATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTGTTTATG
196 TGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATG
*
37810062 ATTTTCAAACTAAGAAGAAAGGTTTTGATTTTACTTTGCAAATTTTGGTTTGGAACTTCGGTTAA
261 ATTTTCAAACTAAGAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAA
* *
37810127 CAAAACTTCAAAATCTATTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGA
326 CAAAACTTCTAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGA
*
37810192 TAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAAAAG
391 TAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTACTGAATTTTGTTAAAAG
* * * * **
37810249 CAAGCAAAGGTGGTTTGGAAAAGTAAATTTCTTATCCTGGAGTAGTTTAATAAAGCTTTTCATAA
1 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
* *
37810314 GTTTATAGAATGTATTTTCAATTAGATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTA
66 GTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
37810379 TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
131 TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
* *
37810444 TGGGTTTAAGCAAACTAAAATGCTATTTTCTTTAAGTAATGATCGTTCTAAAGTAACTGTTTATG
196 TGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATG
*
37810509 ATTTTCAAACTAAGAAAGAAAGGTTTTGATTTTACGTTACAAATTTTGGTTTGGAACTTCGGTTA
261 ATTTTCAAACTAAG-AAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTA
* *
37810574 ACAAAACTTCTAAATCTGTTTTGGTTACAATTTTAATACACGAGCTGTTAATCTGGTTTTAAGTG
325 ACAAAACTTCTAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTG
* *
37810639 ATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTTCTACTAAATTTTGTTAAAAG
390 ATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTACTGAATTTTGTTAAAAG
* *
37810697 CAAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTGTAGTTTAATAAAGCTTTTCATAA
1 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
* * * *
37810762 GTTTATAGAAAGTATTTTGC-ATGAGATTGCAATTATGATATATGAACTGAGGTATGGGTTTATT
66 GTTTATAGAAAGTATTTT-CAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTT
*
37810826 ATTATTATTTTGGACTCATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGC
130 ATTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGC
* *
37810891 ATGGGTTTAAACAAACTAAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTAT
195 ATGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTAT
** *
37810956 GATGGTCAAACTAAGAAGAAAGGTTTTGATTTTAAGTTGCAAATTTTGGTTTGGAACTTCGGTTA
260 GATTTTCAAACTAAGAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTA
* * *
37811021 ACAAAACTTCTAAATGTGTTTTAGTTACAATTTTAATACATGAGCTGTTAATCTGGTTTTAAGTG
325 ACAAAACTTCTAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTG
* * *
37811086 ATAATTAAACTAAAGTTTGGAATTCGTAAAGTAAATTACTACTGAATTTTGTCAAAAG
390 ATAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTACTGAATTTTGTTAAAAG
37811144 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
1 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
* *
37811209 GTTTATAGAATGTATTTTCAATTAGATTGTAATTATGTTACATGAACTGAGGTATGGGTTTTTTA
66 GTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
* * * *
37811274 TTATTGTTTTGGACTCAGAAAGTTTTGGGTTCATAGTTTTGAATTAAAAACTATTATTTCATGCA
131 TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
* ** *
37811339 TGGGTTTAAGCTAACTGAAATGCTATTTTCTTTAACAAATGTTCGTTCTAAAGTAACTATTTATG
196 TGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATG
37811404 ATTTTCAAACTAAGAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAA
261 ATTTTCAAACTAAGAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAA
* * * *
37811469 CAAAACTTCAAAATATATTTTCGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGA
326 CAAAACTTCTAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGA
*
37811534 TAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTGCTGAATTTTGTTAAAAG
391 TAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTACTGAATTTTGTTAAAAG
* * *
37811591 CGAGCAAAGGTGGTTTGGAAAAGGAAATTTCTTATCCTGGTGTAGTTTAATAAAGCTTTTCATAA
1 CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
** *
37811656 GTTTATAGAGTGTATTTTCAATTAGATTGTAATTATGTTATATGAACAGAGGTATGGGTTTTTTA
66 GTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
*
37811721 TTATTATTTTGGACACATAAAGTTTTGGGTTGTTAGTTTTGAATTAAAAACTATTATTTCATGCA
131 TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
*
37811786 TGGGTTTAAACAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATG
196 TGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATG
* *
37811851 ATTTTCAAACAAAGAAGAAAGGTTTTGATTTTACATTGCAAATTTTGGTTTGGAACTTCGGTTAA
261 ATTTTCAAACTAAGAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAA
37811916 CAAAACTTCTAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGA
326 CAAAACTTCTAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGA
* * *
37811981 TAATTAAACTAATGTTTGGAATTCGTATGGTAAATTACTATTGAATTTTGTTAACAG
391 TAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTACTGAATTTTGTTAAAAG
* * * *
37812038 CGAGTAAAGGTGGATTCAAAATGGAAATT
1 CGAGCAAAGGTGGTTTGAAAAAGGAAATT
37812067 AAGAGATTTG
Statistics
Matches: 3595, Mismatches: 449, Indels: 20
0.88 0.11 0.00
Matches are distributed among these distances:
446 219 0.06
447 2363 0.66
448 1012 0.28
449 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.40
Consensus pattern (447 bp):
CGAGCAAAGGTGGTTTGAAAAAGGAAATTTCTTATCTTGGTTTAGTTTAATAAAGCTTTTCATAA
GTTTATAGAAAGTATTTTCAATTAGATTGTAATTATGTTATATGAACTGAGGTATGGGTTTTTTA
TTATTATTTTGGACACATAAAGTTTTGGGTTCTTAGTTTTGAATTAAAAACTATTATTTCATGCA
TGGGTTTAAGCAAACTGAAATGCTATTTTCTTTAAGTAATGTTCGTTCTAAAGTAACTGTTTATG
ATTTTCAAACTAAGAAGAAAGGTTTTGATTTTACGTTGCAAATTTTGGTTTGGAACTTCGGTTAA
CAAAACTTCTAAATCTGTTTTGGTTACAAATTTAATACATGAGCTGTTAATCTGGTTTTAAGTGA
TAATTAAACTAATGTTTGGAATTCGTAAGGTAAATTACTACTGAATTTTGTTAAAAG
Found at i:37817188 original size:23 final size:23
Alignment explanation
Indices: 37817150--37817193 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
37817140 TAGTTGACGT
* *
37817150 TGTAATATCCCGAAAATTACTGA
1 TGTAATACCCCAAAAATTACTGA
37817173 TGTAATACCCCAAAAATTACT
1 TGTAATACCCCAAAAATTACT
37817194 ACAGTAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACTGA
Found at i:37823439 original size:21 final size:21
Alignment explanation
Indices: 37823408--37823465 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
37823398 AATGCCTGCA
*
37823408 CACACGAGCGTGTGGAGTAGT
1 CACACGGGCGTGTGGAGTAGT
*
37823429 CACATGGGCGTGTGGAGTAGT
1 CACACGGGCGTGTGGAGTAGT
37823450 CACACGGGCGTGTGGA
1 CACACGGGCGTGTGGA
37823466 TAACCACACG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.21, C:0.19, G:0.41, T:0.19
Consensus pattern (21 bp):
CACACGGGCGTGTGGAGTAGT
Found at i:37831561 original size:17 final size:17
Alignment explanation
Indices: 37831539--37831571 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
37831529 ATAGAAAGTC
37831539 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
37831556 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
37831572 AAATCTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.24
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:37835127 original size:17 final size:17
Alignment explanation
Indices: 37835105--37835137 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
37835095 ATAGAAAGTC
37835105 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
37835122 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
37835138 AAACCTGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.24
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:37846302 original size:43 final size:43
Alignment explanation
Indices: 37846252--37846382 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 43
37846242 AAAATGCCTT
* * * *
37846252 TAAAGATCATGGTCTTTAGCGACACTTTTGCCACAAACGCTGC
1 TAAAGATCATGGCCTTTAGCGACACTTCTACCACAAACGCCGC
* * *
37846295 TAAAGATCATGGCCTTTAGCGGCGCTTCTACTACAAACGCCGC
1 TAAAGATCATGGCCTTTAGCGACACTTCTACCACAAACGCCGC
* * * * ** *
37846338 TAAAGGTCATGACCTTTAACGACGCTTCTATTAGAAACGCCGC
1 TAAAGATCATGGCCTTTAGCGACACTTCTACCACAAACGCCGC
37846381 TA
1 TA
37846383 TAAAAAATGA
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 75 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (43 bp):
TAAAGATCATGGCCTTTAGCGACACTTCTACCACAAACGCCGC
Found at i:37846476 original size:22 final size:22
Alignment explanation
Indices: 37846450--37846508 Score: 100
Period size: 22 Copynumber: 2.6 Consensus size: 22
37846440 AAAACTTAAT
37846450 TAAATAATATTTATTTCTATGA
1 TAAATAATATTTATTTCTATGA
37846472 TAAATAATATTTATTTCTATGA
1 TAAATAATATTTATTTCTATGA
*
37846494 TAAATATTATATTAT
1 TAAATAATAT-TTAT
37846509 GTTTTATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
22 31 0.89
23 4 0.11
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.51
Consensus pattern (22 bp):
TAAATAATATTTATTTCTATGA
Found at i:37847509 original size:47 final size:45
Alignment explanation
Indices: 37847455--37847545 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
37847445 CCCTACATGT
*
37847455 GCCATCATGTCAGATGTAGAAAAGGCTTAATATGTAATGATAAAAAG
1 GCCATCAT-T-AGATGTAGAAAAGGCTTAATATGTAATGACAAAAAG
*** *
37847502 GCCATCATTTTTTGTGGAAAAGGCTTAATATGTAATGACAAAAA
1 GCCATCATTAGATGTAGAAAAGGCTTAATATGTAATGACAAAAA
37847546 TGGAAGCAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
45 30 0.77
46 1 0.03
47 8 0.21
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.29
Consensus pattern (45 bp):
GCCATCATTAGATGTAGAAAAGGCTTAATATGTAATGACAAAAAG
Found at i:37852754 original size:7 final size:7
Alignment explanation
Indices: 37852744--37852783 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
37852734 TAGTAACTCT
*
37852744 TAAACCT
1 TAAACCC
37852751 TAAACCC
1 TAAACCC
*
37852758 TAAACCA
1 TAAACCC
*
37852765 TATACCC
1 TAAACCC
37852772 TAAACCC
1 TAAACCC
37852779 TAAAC
1 TAAAC
37852784 TATAATGATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:37852919 original size:7 final size:7
Alignment explanation
Indices: 37852907--37853017 Score: 64
Period size: 7 Copynumber: 15.6 Consensus size: 7
37852897 CCCCAACCTT
37852907 TAAACCA
1 TAAACCA
37852914 TAAACCA
1 TAAACCA
*
37852921 TAAATCA
1 TAAACCA
*
37852928 TAACCCA
1 TAAACCA
37852935 TAAACCCA
1 TAAA-CCA
*
37852943 TAATCCA
1 TAAACCA
*
37852950 TAAACCT
1 TAAACCA
***
37852957 TAAAATGG
1 T-AAACCA
37852965 TAACACC-
1 TAA-ACCA
*
37852972 TAAACCT
1 TAAACCA
37852979 TAAACTC-
1 TAAAC-CA
37852986 TAAACCA
1 TAAACCA
* *
37852993 TATACCC
1 TAAACCA
37853000 TAAACCA
1 TAAACCA
* *
37853007 AAAACCC
1 TAAACCA
37853014 TAAA
1 TAAA
37853018 ATATAGTAAT
Statistics
Matches: 79, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
6 4 0.05
7 63 0.80
8 12 0.15
ACGTcount: A:0.50, C:0.29, G:0.02, T:0.20
Consensus pattern (7 bp):
TAAACCA
Found at i:37853484 original size:41 final size:41
Alignment explanation
Indices: 37853434--37853656 Score: 250
Period size: 41 Copynumber: 5.4 Consensus size: 41
37853424 CGCTTATTGG
*
37853434 AAAACGCCGCTAAAGCCTAGAGCATTAGTGGCGCTTTTTCA
1 AAAACGCCGCTAAAGCCTAGAGCATTAGCGGCGCTTTTTCA
* * * * * **
37853475 AAAATGCCGCTAAAGCCGCAGCGCATCAGCGGCGCTTATTGG
1 AAAACGCCGCTAAAGCC-TAGAGCATTAGCGGCGCTTTTTCA
*
37853517 AAAACGCCGCTAAAGCCTAGAGCATTAGTGGCGCTTTTTCA
1 AAAACGCCGCTAAAGCCTAGAGCATTAGCGGCGCTTTTTCA
* * * * **
37853558 GAAATGCCGCTAAATCCCAGAGCATTAGCAACGCTTTTTCA
1 AAAACGCCGCTAAAGCCTAGAGCATTAGCGGCGCTTTTTCA
* * * *
37853599 AAAATGCCACTAAA-TCTCAGAGCATTAGCGACGCTTTTTCA
1 AAAACGCCGCTAAAGCCT-AGAGCATTAGCGGCGCTTTTTCA
37853640 AAAACGCCGCTAAAGCC
1 AAAACGCCGCTAAAGCC
37853657 CCGAAAAGCT
Statistics
Matches: 148, Mismatches: 31, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
40 1 0.01
41 113 0.76
42 34 0.23
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (41 bp):
AAAACGCCGCTAAAGCCTAGAGCATTAGCGGCGCTTTTTCA
Found at i:37853526 original size:42 final size:41
Alignment explanation
Indices: 37853401--37853657 Score: 165
Period size: 41 Copynumber: 6.2 Consensus size: 41
37853391 AAAGCCCCTA
* *
37853401 CTAAAGCCCCAGCGCACCAGCAGCGCTTATTGGAAAACGCCG
1 CTAAAG-CCCAGCGCATCAGCGGCGCTTATTGGAAAACGCCG
* * * * * ** *
37853443 CTAAAGCCTAGAGCATTAGTGGCGCTTTTTCAAAAATGCCG
1 CTAAAGCCCAGCGCATCAGCGGCGCTTATTGGAAAACGCCG
37853484 CTAAAGCCGCAGCGCATCAGCGGCGCTTATTGGAAAACGCCG
1 CTAAAGCC-CAGCGCATCAGCGGCGCTTATTGGAAAACGCCG
* * * * ** *
37853526 CTAAAGCCTAGAGCATTAGTGGCGCTT-TTTCAGAAATGCCG
1 CTAAAGCCCAGCGCATCAGCGGCGCTTATTGGA-AAACGCCG
* * * ** * ** * *
37853567 CTAAATCCCAGAGCATTAGCAACGCTTTTTCAAAAATGCCA
1 CTAAAGCCCAGCGCATCAGCGGCGCTTATTGGAAAACGCCG
* * * * * * **
37853608 CTAAATCTCAGAGCATTAGCGACGCTTTTTCAAAAACGCCG
1 CTAAAGCCCAGCGCATCAGCGGCGCTTATTGGAAAACGCCG
37853649 CTAAAGCCC
1 CTAAAGCCC
37853658 CGAAAAGCTC
Statistics
Matches: 173, Mismatches: 39, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
40 3 0.02
41 128 0.74
42 42 0.24
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (41 bp):
CTAAAGCCCAGCGCATCAGCGGCGCTTATTGGAAAACGCCG
Done.