Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 142 of 198
Found at i:45175328 original size:21 final size:21
Alignment explanation
Indices: 45175296--45175351 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
45175286 CAAAATAATA
*
45175296 GAGGAAAAAAAAAGGGTGATG
1 GAGGGAAAAAAAAGGGTGATG
* *
45175317 TAGGG-GAAAAAAGGGTGATG
1 GAGGGAAAAAAAAGGGTGATG
45175337 GAGGGAAAAAAAAGG
1 GAGGGAAAAAAAAGG
45175352 CAGCACAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 18 0.62
21 11 0.38
ACGTcount: A:0.50, C:0.00, G:0.41, T:0.09
Consensus pattern (21 bp):
GAGGGAAAAAAAAGGGTGATG
Found at i:45181009 original size:15 final size:12
Alignment explanation
Indices: 45180972--45181002 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
45180962 AAAAAAATTT
*
45180972 ATACTCAAAATA
1 ATACACAAAATA
45180984 ATACACAAAATA
1 ATACACAAAATA
45180996 ATACACA
1 ATACACA
45181003 CTAAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.61, C:0.19, G:0.00, T:0.19
Consensus pattern (12 bp):
ATACACAAAATA
Found at i:45181305 original size:19 final size:21
Alignment explanation
Indices: 45181281--45181319 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
45181271 ACTAAAACAA
*
45181281 AAAAT-ATTACAA-AATATAC
1 AAAATAATAACAACAATATAC
45181300 AAAATAATAACAACAATATA
1 AAAATAATAACAACAATATA
45181320 ATCAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAATAATAACAACAATATAC
Found at i:45181527 original size:27 final size:27
Alignment explanation
Indices: 45181471--45181528 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
45181461 CCAGTTAGTA
***
45181471 TGGCACCATTGGTGCCGCCAATGGTTT
1 TGGCACCATTGGTGCCGCCAATGCCAT
* *
45181498 TGGCACCTTTGGTGCCGCCAATTCCAT
1 TGGCACCATTGGTGCCGCCAATGCCAT
45181525 TGGC
1 TGGC
45181529 GTGACCAGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.14, C:0.29, G:0.28, T:0.29
Consensus pattern (27 bp):
TGGCACCATTGGTGCCGCCAATGCCAT
Found at i:45181611 original size:27 final size:27
Alignment explanation
Indices: 45181569--45181622 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
45181559 TTTTTTTTGG
*
45181569 TTTTTTTGATATATTTTGGTAAATAAA
1 TTTTTTTGATACATTTTGGTAAATAAA
*
45181596 TTTTTTTTATACATTTTGGTAAATAAA
1 TTTTTTTGATACATTTTGGTAAATAAA
45181623 AAAATTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.56
Consensus pattern (27 bp):
TTTTTTTGATACATTTTGGTAAATAAA
Found at i:45183188 original size:88 final size:86
Alignment explanation
Indices: 45183087--45183309 Score: 295
Period size: 89 Copynumber: 2.5 Consensus size: 86
45183077 TTTAAGGGTG
* * *
45183087 CAAAAAG-CCCTCAAACTTAAAAAAAAAAGCAATTAAGCCCCTACTTTTTTTTGCACTCATTTGG
1 CAAAAAGACCCTCAAACTTTAAAAAAAAA--AATTAAGCCCCTACTTTTTTTTGCACTCAATTAG
*
45183151 GTACTTAAACTTTCAAAATGCAT
64 ATACTTAAACTTTCAAAATGCAT
* *
45183174 CAAAAAGACCCTCAAACCTTTTCAAAATAAAAATTAAGCCCCTACTGTTTTTTTGCACTCAATTA
1 CAAAAAGACCCTCAAA-C-TTTAAAAAAAAAAATTAAGCCCCTACT-TTTTTTTGCACTCAATTA
* *
45183239 GATACTTGAACTTTTAAAATGCAT
63 GATACTTAAACTTTCAAAATGCAT
* * *
45183263 CAAAAAGACTCTCAAACTTTAAAAAAAAAATTTAAGCCCCTTCTTTT
1 CAAAAAGACCCTCAAACTTTAAAAAAAAAAATTAAGCCCCTACTTTT
45183310 ATTAAAAATT
Statistics
Matches: 119, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
86 3 0.03
87 30 0.25
88 24 0.20
89 53 0.45
90 9 0.08
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (86 bp):
CAAAAAGACCCTCAAACTTTAAAAAAAAAAATTAAGCCCCTACTTTTTTTTGCACTCAATTAGAT
ACTTAAACTTTCAAAATGCAT
Found at i:45183395 original size:19 final size:19
Alignment explanation
Indices: 45183371--45183486 Score: 82
Period size: 19 Copynumber: 6.2 Consensus size: 19
45183361 ATAAAAATTT
45183371 AAAATATTAAAAATTATTA
1 AAAATATTAAAAATTATTA
** *
45183390 AAAATA-TATAAAATCGTAA
1 AAAATATTA-AAAATTATTA
45183409 AAAATATATAAAAATT-TTA
1 AAAATAT-TAAAAATTATTA
* *
45183428 AAATTTTATAAAAATTA-TA
1 AAAATAT-TAAAAATTATTA
45183447 AAAA-ATTATAAAA-TATATA
1 AAAATATTA-AAAATTAT-TA
* *
45183466 GAAATATAAAAAATTA-TA
1 AAAATATTAAAAATTATTA
45183484 AAA
1 AAA
45183487 TTTTATAAAG
Statistics
Matches: 76, Mismatches: 12, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
17 4 0.05
18 11 0.14
19 49 0.64
20 10 0.13
21 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATATTAAAAATTATTA
Found at i:45183401 original size:28 final size:28
Alignment explanation
Indices: 45183362--45183487 Score: 127
Period size: 29 Copynumber: 4.5 Consensus size: 28
45183352 AATTTTAATA
45183362 TAAAAATT-TAAAATAT-TAAAAATTAT
1 TAAAAATTATAAAATATATAAAAATTAT
*
45183388 TAAAAATATATAAAATCGTA-AAAAA-TAT
1 TAAAAAT-TATAAAAT-ATATAAAAATTAT
* *
45183416 ATAAAAATTTTAAAATTTTATAAAAATTAT
1 -TAAAAATTATAAAA-TATATAAAAATTAT
* *
45183446 AAAAAATTATAAAATATATAGAAA-TAT
1 TAAAAATTATAAAATATATAAAAATTAT
*
45183473 AAAAAATTATAAAAT
1 TAAAAATTATAAAAT
45183488 TTTATAAAGT
Statistics
Matches: 85, Mismatches: 7, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
26 7 0.08
27 19 0.22
28 25 0.29
29 31 0.36
30 3 0.04
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (28 bp):
TAAAAATTATAAAATATATAAAAATTAT
Found at i:45183432 original size:47 final size:48
Alignment explanation
Indices: 45183371--45183518 Score: 144
Period size: 47 Copynumber: 3.1 Consensus size: 48
45183361 ATAAAAATTT
45183371 AAAATATTAAAAATTATTAAAAATATATAAAATCGTAAAAAATATATA
1 AAAATATTAAAAATTATTAAAAATATATAAAATCGTAAAAAATATATA
* * * *
45183419 AAAAT-TTTAAAATTTTATAAAAATTATAAAAAAT--TATAAAATATATA
1 AAAATATTAAAAATTAT-TAAAAA-TATATAAAATCGTAAAAAATATATA
* * * * *
45183466 GAAATATAAAAAATTA-TAAAATTTTATAAAGTCGTAAGAAAAT-TATA
1 AAAATATTAAAAATTATTAAAAATATATAAAATCGTAA-AAAATATATA
45183513 CAAAAT
1 -AAAAT
45183519 GTAAAGAAAT
Statistics
Matches: 79, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
45 7 0.09
46 5 0.06
47 31 0.39
48 27 0.34
49 9 0.11
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.33
Consensus pattern (48 bp):
AAAATATTAAAAATTATTAAAAATATATAAAATCGTAAAAAATATATA
Found at i:45183470 original size:10 final size:9
Alignment explanation
Indices: 45183359--45183487 Score: 72
Period size: 9 Copynumber: 14.0 Consensus size: 9
45183349 TTAAATTTTA
45183359 ATATAAAA-
1 ATATAAAAT
*
45183367 ATTTAAAAT
1 ATATAAAAT
45183376 AT-TAAAA-
1 ATATAAAAT
45183383 ATTATTAAAAAT
1 A-TA-T-AAAAT
45183395 ATATAAAAT
1 ATATAAAAT
* *
45183404 CGTAAAAAAT
1 -ATATAAAAT
45183414 ATATAAAA-
1 ATATAAAAT
*
45183422 ATTTTAAAATT
1 A-TATAAAA-T
*
45183433 TTATAAAA-
1 ATATAAAAT
*
45183441 ATTATAAAAA
1 A-TATAAAAT
45183451 ATTATAAAAT
1 A-TATAAAAT
45183461 ATATAGAAAT
1 ATATA-AAAT
*
45183471 ATAAAAAAT
1 ATATAAAAT
45183480 -TATAAAAT
1 ATATAAAAT
45183488 TTTATAAAGT
Statistics
Matches: 96, Mismatches: 12, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
7 1 0.01
8 21 0.22
9 34 0.35
10 33 0.34
11 6 0.06
12 1 0.01
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.34
Consensus pattern (9 bp):
ATATAAAAT
Found at i:45183492 original size:10 final size:9
Alignment explanation
Indices: 45183360--45183495 Score: 66
Period size: 10 Copynumber: 14.7 Consensus size: 9
45183350 TAAATTTTAA
*
45183360 TATAAAAAT
1 TATAAAATT
45183369 T-TAAAATAT
1 TATAAAAT-T
45183378 TA-AAAA-T
1 TATAAAATT
*
45183385 TATTAAAAATA
1 TA-T-AAAATT
*
45183396 TATAAAATCG
1 TATAAAAT-T
* *
45183406 TAAAAAATA
1 TATAAAATT
45183415 TATAAAAATT
1 TAT-AAAATT
45183425 T-TAAAATTT
1 TATAAAA-TT
*
45183434 TATAAAAAT
1 TATAAAATT
*
45183443 TATAAAAAAT
1 TAT-AAAATT
*
45183453 TATAAAATA
1 TATAAAATT
*
45183462 TATAGAAATA
1 TATA-AAATT
*
45183472 TA-AAAAAT
1 TATAAAATT
45183480 TATAAAATTT
1 TATAAAA-TT
45183490 TATAAA
1 TATAAA
45183496 GTCGTAAGAA
Statistics
Matches: 100, Mismatches: 13, Indels: 27
0.71 0.09 0.19
Matches are distributed among these distances:
7 3 0.03
8 14 0.14
9 35 0.35
10 46 0.46
11 2 0.02
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (9 bp):
TATAAAATT
Found at i:45183508 original size:56 final size:57
Alignment explanation
Indices: 45183358--45183533 Score: 161
Period size: 56 Copynumber: 3.1 Consensus size: 57
45183348 ATTAAATTTT
* * * *
45183358 AATAT-AAAAATT-TAAAA-TAT-TAAAAATTATTAAAAA-TATATAAAATCGTAAA-A
1 AATATAAAAAATTATAAAATTTTATAAAAATCATAAAAAATTATA-AAAAT-ATAAAGA
* * *
45183411 AATATATAAAAATTTTAAAATTTTATAAAAATTATAAAAAATTAT-AAAATATATAGA
1 AATATA-AAAAATTATAAAATTTTATAAAAATCATAAAAAATTATAAAAATATAAAGA
* * *
45183468 AATATAAAAAATTATAAAATTTTAT-AAAGTCGTAAGAAAATTATACAAAATGTAAAGA
1 AATATAAAAAATTATAAAATTTTATAAAAATCATAA-AAAATTATA-AAAATATAAAGA
45183526 AATATAAA
1 AATATAAA
45183534 TTTCATAAAA
Statistics
Matches: 103, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
53 5 0.05
55 14 0.14
56 34 0.33
57 14 0.14
58 33 0.32
59 3 0.03
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (57 bp):
AATATAAAAAATTATAAAATTTTATAAAAATCATAAAAAATTATAAAAATATAAAGA
Found at i:45183783 original size:18 final size:19
Alignment explanation
Indices: 45183757--45183844 Score: 60
Period size: 18 Copynumber: 4.7 Consensus size: 19
45183747 AAAAAAATTC
*
45183757 TAATCTTTAATAAATTT-T
1 TAATTTTTAATAAATTTAT
*
45183775 TAATTTTTATTAAAATTTAGT
1 TAATTTTTAAT-AAATTTA-T
*
45183796 AAATTTTCT-A-AAATTTAT
1 TAATTTT-TAATAAATTTAT
* *
45183814 TAATTATTAAT-TATTT-T
1 TAATTTTTAATAAATTTAT
45183831 CTAATTTTTAATAA
1 -TAATTTTTAATAA
45183845 GAGTAGGGGC
Statistics
Matches: 53, Mismatches: 9, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
17 2 0.04
18 30 0.57
19 13 0.25
21 7 0.13
22 1 0.02
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (19 bp):
TAATTTTTAATAAATTTAT
Found at i:45184009 original size:88 final size:88
Alignment explanation
Indices: 45183849--45184021 Score: 249
Period size: 88 Copynumber: 2.0 Consensus size: 88
45183839 TAATAAGAGT
* *
45183849 AGGGGCTTAATTGTTTTTTTGAAAAATTTTGAGGGTCTTTTTGATGCATTTTAAAAGTTCAAGTA
1 AGGGGCTTAATTGTTTTTTTGAAAAAGTTTGAGGGTCTTTTTAATGCATTTTAAAAGTTCAAGTA
45183914 CCCAATTGAATG-AAAAAAAGAC
66 CCCAATTGAATGCAAAAAAAGAC
* * *
45183936 AGGGGCTTAATTGCTTTTTTTGAAGAAGTTTGAGGGTTTTTTTAATGCATTTTGAAAGTTCAAGT
1 AGGGGCTTAATTG-TTTTTTTGAAAAAGTTTGAGGGTCTTTTTAATGCATTTTAAAAGTTCAAGT
* ** *
45184001 GCTTAATTGAGTGCAAAAAAA
65 ACCCAATTGAATGCAAAAAAA
45184022 AAAGAGAGAG
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
87 13 0.17
88 55 0.73
89 7 0.09
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.38
Consensus pattern (88 bp):
AGGGGCTTAATTGTTTTTTTGAAAAAGTTTGAGGGTCTTTTTAATGCATTTTAAAAGTTCAAGTA
CCCAATTGAATGCAAAAAAAGAC
Found at i:45186083 original size:18 final size:18
Alignment explanation
Indices: 45186060--45186097 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
45186050 AGATCAGCAG
45186060 TGGTTTAACACCAGTCGA
1 TGGTTTAACACCAGTCGA
45186078 TGGTTTAACACCAGTCGA
1 TGGTTTAACACCAGTCGA
45186096 TG
1 TG
45186098 TTCCGGCAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (18 bp):
TGGTTTAACACCAGTCGA
Found at i:45189728 original size:2 final size:2
Alignment explanation
Indices: 45189721--45189748 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
45189711 ATTCACTTAT
45189721 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45189749 AATTATTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45192284 original size:14 final size:14
Alignment explanation
Indices: 45192265--45192298 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
45192255 AAATTTAAGT
45192265 TTTTCAAATT-TTAA
1 TTTTCAAATTATT-A
45192279 TTTTCAAATTATTA
1 TTTTCAAATTATTA
45192293 TTTTCA
1 TTTTCA
45192299 TAAACTTCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.89
15 2 0.11
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTCAAATTATTA
Found at i:45192845 original size:31 final size:29
Alignment explanation
Indices: 45192775--45192848 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
45192765 GGTTCAAGTT
* *
45192775 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTCAAATGTA
* *
45192804 ACGTTTTAGTCACTTATGTTATCATGATGTA
1 ACATTTTAGTCACTTATGTT-TCA-AATGTA
45192835 ACATTTTAGTCACT
1 ACATTTTAGTCACT
45192849 GAGCCGTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 19 0.50
30 2 0.05
31 17 0.45
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.46
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTCAAATGTA
Found at i:45197478 original size:16 final size:16
Alignment explanation
Indices: 45197457--45197487 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45197447 AAAGACACCG
45197457 AGTAAAAGAAATAATC
1 AGTAAAAGAAATAATC
*
45197473 AGTAAAAGAGATAAT
1 AGTAAAAGAAATAAT
45197488 TGAAAAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.03, G:0.16, T:0.19
Consensus pattern (16 bp):
AGTAAAAGAAATAATC
Found at i:45198382 original size:15 final size:16
Alignment explanation
Indices: 45198364--45198396 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
45198354 TGGTAAGCAA
45198364 TGAAATG-AATTAAGT
1 TGAAATGTAATTAAGT
45198379 TGAAATGTTAATTAAGT
1 TGAAATG-TAATTAAGT
45198396 T
1 T
45198397 AAAGGTTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.39
Consensus pattern (16 bp):
TGAAATGTAATTAAGT
Found at i:45205728 original size:12 final size:12
Alignment explanation
Indices: 45205711--45205737 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45205701 AGTCTAGAAG
45205711 AAAATTTATTTT
1 AAAATTTATTTT
45205723 AAAATTTATTTT
1 AAAATTTATTTT
45205735 AAA
1 AAA
45205738 GTTTTTACCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
AAAATTTATTTT
Found at i:45212254 original size:24 final size:24
Alignment explanation
Indices: 45212142--45212268 Score: 68
Period size: 24 Copynumber: 5.3 Consensus size: 24
45212132 TCTTTGTGAT
* *
45212142 CTTCCCGA-TATGGCTCACTTGAA
1 CTTCCCGATTATGGCTCACATGAG
*
45212165 CTTCCCGATATATGGCT-ATTC-GGAG
1 CTTCCCGAT-TATGGCTCA--CATGAG
* * *
45212190 CTTCCC-ATTAATGACTCTTCA-AAG
1 CTTCCCGATT-ATGGCTC-ACATGAG
* *
45212214 CTACCC-ATTATTAGCTCACATGAG
1 CTTCCCGATTA-TGGCTCACATGAG
**
45212238 CTTCCCGATTATGGCTCTTATGAG
1 CTTCCCGATTATGGCTCACATGAG
45212262 CTTCCCG
1 CTTCCCG
45212269 TAGTTGTAAT
Statistics
Matches: 79, Mismatches: 14, Indels: 21
0.69 0.12 0.18
Matches are distributed among these distances:
23 12 0.15
24 47 0.59
25 19 0.24
26 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32
Consensus pattern (24 bp):
CTTCCCGATTATGGCTCACATGAG
Found at i:45221799 original size:41 final size:41
Alignment explanation
Indices: 45221754--45221843 Score: 139
Period size: 41 Copynumber: 2.2 Consensus size: 41
45221744 ATCTGCACTT
*
45221754 AGCCTGCTAGACATATAGTCTG-AGATATTTCACCGGCATTA
1 AGCCTGCTAGACATATAGTCTGAAG-TATTTCACCGGCAATA
*
45221795 AGCCTGCTAGACATATAGTCTGAAGTGTTTCACCGGCAATA
1 AGCCTGCTAGACATATAGTCTGAAGTATTTCACCGGCAATA
45221836 A-CCTGCTA
1 AGCCTGCTA
45221844 AGCGCTATGC
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
40 7 0.15
41 37 0.80
42 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (41 bp):
AGCCTGCTAGACATATAGTCTGAAGTATTTCACCGGCAATA
Found at i:45223420 original size:26 final size:26
Alignment explanation
Indices: 45223390--45223460 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
45223380 ATCTCACCAT
*
45223390 AGCTCGTATGAGCTTACCGATATAAC
1 AGCTCTTATGAGCTTACCGATATAAC
45223416 AGCTCTTATGAGCTTACCGATATAAC
1 AGCTCTTATGAGCTTACCGATATAAC
45223442 AGCTCTTATGAGCTTACCG
1 AGCTCTTATGAGCTTACCG
45223461 TTTCAACTCG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
AGCTCTTATGAGCTTACCGATATAAC
Found at i:45228400 original size:14 final size:14
Alignment explanation
Indices: 45228381--45228411 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
45228371 AGGTTAACAA
45228381 TTTAATAAATGATT
1 TTTAATAAATGATT
45228395 TTTAATAAATGATT
1 TTTAATAAATGATT
45228409 TTT
1 TTT
45228412 GATGATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (14 bp):
TTTAATAAATGATT
Found at i:45230906 original size:30 final size:31
Alignment explanation
Indices: 45230872--45230931 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
45230862 AAACCTTTTA
45230872 TTTTCCC-TCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCAT-AAAATTTTTACTCCCTTCCCAC
*
45230902 TTTTCCCATAAAATTTTTATTCCCTTCCCA
1 TTTTCCCATAAAATTTTTACTCCCTTCCCA
45230932 TCCCACCTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.22, C:0.35, G:0.00, T:0.43
Consensus pattern (31 bp):
TTTTCCCATAAAATTTTTACTCCCTTCCCAC
Found at i:45234055 original size:44 final size:44
Alignment explanation
Indices: 45233988--45234081 Score: 161
Period size: 44 Copynumber: 2.1 Consensus size: 44
45233978 GTCTCGACTT
*
45233988 TCATTTTCATATGCTTATCAAATATAAGTATTATATTAATCAAC
1 TCATTTTCATATGCTTATCAAATATAAGTATTATATTAATCAAA
* *
45234032 TCATTTTCATATGCTTATTAAATATAAGTATTGTATTAATCAAA
1 TCATTTTCATATGCTTATCAAATATAAGTATTATATTAATCAAA
45234076 TCATTT
1 TCATTT
45234082 ATTGAATATA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.46
Consensus pattern (44 bp):
TCATTTTCATATGCTTATCAAATATAAGTATTATATTAATCAAA
Found at i:45234713 original size:13 final size:13
Alignment explanation
Indices: 45234692--45234729 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
45234682 ACACTCAAAT
45234692 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
*
45234705 TTCTGAAAAGCAC
1 TTCTCAAAAGCAC
*
45234718 ATCTCAAAAGCA
1 TTCTCAAAAGCA
45234730 ATGAAGAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.42, C:0.26, G:0.11, T:0.21
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:45241680 original size:49 final size:50
Alignment explanation
Indices: 45241605--45241702 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 50
45241595 ACAATATGAA
*
45241605 CATATTGAAAGATAGCAAATAAGCTTTAGCACTAGTGAGTGAAATCACAG
1 CATATTGAAAGATAGCAAATAAGCTTTAGCACTACTGAGTGAAATCACAG
45241655 CATATTGAAAGAT-GCAAATAAGCTTTAGCACTACTGAGTGAAATCACA
1 CATATTGAAAGATAGCAAATAAGCTTTAGCACTACTGAGTGAAATCACA
45241703 TGCCTTGTGC
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 34 0.72
50 13 0.28
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.24
Consensus pattern (50 bp):
CATATTGAAAGATAGCAAATAAGCTTTAGCACTACTGAGTGAAATCACAG
Found at i:45244397 original size:4 final size:4
Alignment explanation
Indices: 45244388--45244440 Score: 97
Period size: 4 Copynumber: 13.2 Consensus size: 4
45244378 TCCTCAGCCA
45244388 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
45244436 AATG T
1 TATG T
45244441 GTTTAGGTAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.26, C:0.00, G:0.25, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:45252659 original size:43 final size:44
Alignment explanation
Indices: 45252552--45252668 Score: 143
Period size: 44 Copynumber: 2.7 Consensus size: 44
45252542 TATGAGTTAT
*
45252552 CATGTAAGACCACGTCTGGGACGTTGGCATGGATTTGAGATTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGAGATTTA
* * *
45252596 CGTGTAAGACC-CTGTTTGGGACAG-TGGCATCGATGTT-TGA-TTA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TTGAGATTTA
45252639 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
45252669 TGTACGAGCT
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
42 1 0.02
43 28 0.45
44 30 0.48
45 3 0.05
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (44 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGAGATTTA
Found at i:45258148 original size:31 final size:30
Alignment explanation
Indices: 45258113--45258174 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
45258103 ATTTCTTTAA
*
45258113 ATGTATATAATCAAATCAAAATTAAAGTTTC
1 ATGTATAT-ATCAAATCAAAATTAAAATTTC
** *
45258144 ATGTATATATTGAATCACAATTAAAATTTC
1 ATGTATATATCAAATCAAAATTAAAATTTC
45258174 A
1 A
45258175 CACATATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.37
Consensus pattern (30 bp):
ATGTATATATCAAATCAAAATTAAAATTTC
Found at i:45276513 original size:3 final size:3
Alignment explanation
Indices: 45276487--45276567 Score: 87
Period size: 3 Copynumber: 26.3 Consensus size: 3
45276477 GTTTTTTAGT
*
45276487 TTA TT- TTA TTA GTA TTGA -TA TTA TTA TT- TTCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TT-A TTA TTA TTA TTA
45276531 TTA TTTA TTTA TTA TTA TTA TTA TATA TTA TTA TTA T
1 TTA -TTA -TTA TTA TTA TTA TTA T-TA TTA TTA TTA T
45276568 ACTATATATA
Statistics
Matches: 69, Mismatches: 2, Indels: 14
0.81 0.02 0.16
Matches are distributed among these distances:
2 5 0.07
3 51 0.74
4 13 0.19
ACGTcount: A:0.31, C:0.01, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:45276544 original size:20 final size:19
Alignment explanation
Indices: 45276505--45276567 Score: 92
Period size: 20 Copynumber: 3.3 Consensus size: 19
45276495 TTAGTATTGA
*
45276505 TATTATTATT-TTCATTAT
1 TATTATTATTATTTATTAT
45276523 TATTATTATTATTTATTTAT
1 TATTATTATTATTTA-TTAT
*
45276543 TATTATTATTATATATTAT
1 TATTATTATTATTTATTAT
45276562 TATTAT
1 TATTAT
45276568 ACTATATATA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
18 10 0.24
19 13 0.32
20 18 0.44
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
TATTATTATTATTTATTAT
Found at i:45276565 original size:33 final size:33
Alignment explanation
Indices: 45276487--45276567 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
45276477 GTTTTTTAGT
*
45276487 TTATT-TTATTAGTATTGATATTATTATTTTCA
1 TTATTATTATTATTATTGATATTATTATTTTCA
*
45276519 TTATTATTATTATTATTTAT-TTATTATTATT-A
1 TTATTATTATTATTATTGATATTATTATT-TTCA
45276551 TTATATATTATTATTAT
1 TTAT-TATTATTATTAT
45276568 ACTATATATA
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
32 18 0.41
33 26 0.59
ACGTcount: A:0.31, C:0.01, G:0.02, T:0.65
Consensus pattern (33 bp):
TTATTATTATTATTATTGATATTATTATTTTCA
Found at i:45276573 original size:16 final size:15
Alignment explanation
Indices: 45276526--45276574 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 15
45276516 TCATTATTAT
*
45276526 TATTATTATT-TATT
1 TATTATTATTATATA
45276540 TATTATTATTATTATA
1 TATTATTATTA-TATA
45276556 TATTATTATTATACTA
1 TATTATTATTATA-TA
45276572 TAT
1 TAT
45276575 ATATGNNNNN
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 10 0.32
15 2 0.06
16 19 0.61
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTATTATTATATA
Found at i:45276575 original size:20 final size:19
Alignment explanation
Indices: 45276520--45276578 Score: 70
Period size: 17 Copynumber: 3.2 Consensus size: 19
45276510 TTATTTTCAT
*
45276520 TATTATTATTAT-TATTTA
1 TATTATTATTATATATATA
45276538 T-TTATTATTAT-TATTATA
1 TATTATTATTATATA-TATA
45276556 TATTATTATTATACTATATA
1 TATTATTATTATA-TATATA
45276576 TAT
1 TAT
45276579 GNNNNNNNNN
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
17 12 0.33
18 5 0.14
19 10 0.28
20 7 0.19
21 2 0.06
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
TATTATTATTATATATATA
Found at i:45277162 original size:4 final size:4
Alignment explanation
Indices: 45277147--45277182 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
45277137 TTGATTTATT
*
45277147 TTTA TTTG TTTA TTTA TTTA TTTA TTTA TGTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTT
45277183 CTATACAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:45280565 original size:30 final size:30
Alignment explanation
Indices: 45280531--45280591 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
45280521 GTGGTCCAGA
45280531 TTCGAGAAGTAGCTGATCACATACAGACTT
1 TTCGAGAAGTAGCTGATCACATACAGACTT
45280561 TTCGAGAAGTAGCTGATCACATACAGACTT
1 TTCGAGAAGTAGCTGATCACATACAGACTT
45280591 T
1 T
45280592 GGCAGTACAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (30 bp):
TTCGAGAAGTAGCTGATCACATACAGACTT
Found at i:45284996 original size:20 final size:22
Alignment explanation
Indices: 45284958--45284997 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
45284948 TACCGAAACG
45284958 GTAGCAAAATAACAACAAAATA
1 GTAGCAAAATAACAACAAAATA
*
45284980 GTAG-AAAA-AACAGCAAAA
1 GTAGCAAAATAACAACAAAA
45284998 CACAATAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 4 0.24
22 4 0.24
ACGTcount: A:0.65, C:0.12, G:0.12, T:0.10
Consensus pattern (22 bp):
GTAGCAAAATAACAACAAAATA
Found at i:45286987 original size:17 final size:17
Alignment explanation
Indices: 45286949--45286990 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
45286939 ATTAAATGAA
45286949 TAGAAATGGTGAAAATG
1 TAGAAATGGTGAAAATG
* *
45286966 GAGAAATGG-GAAACATT
1 TAGAAATGGTGAAA-ATG
45286983 TAGAAATG
1 TAGAAATG
45286991 ATTATTGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.48, C:0.02, G:0.29, T:0.21
Consensus pattern (17 bp):
TAGAAATGGTGAAAATG
Found at i:45287295 original size:61 final size:61
Alignment explanation
Indices: 45287219--45287346 Score: 238
Period size: 61 Copynumber: 2.1 Consensus size: 61
45287209 AGTCATAATG
*
45287219 ATTTTAACAAAACTAGAACTAAGTTGAGAAGATTATTTAATGGAAAAATATTAAGATGTTT
1 ATTTTGACAAAACTAGAACTAAGTTGAGAAGATTATTTAATGGAAAAATATTAAGATGTTT
*
45287280 ATTTTGACAAAACTAGAACTGAGTTGAGAAGATTATTTAATGGAAAAATATTAAGATGTTT
1 ATTTTGACAAAACTAGAACTAAGTTGAGAAGATTATTTAATGGAAAAATATTAAGATGTTT
45287341 ATTTTG
1 ATTTTG
45287347 GGAAATAGAA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 65 1.00
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.36
Consensus pattern (61 bp):
ATTTTGACAAAACTAGAACTAAGTTGAGAAGATTATTTAATGGAAAAATATTAAGATGTTT
Found at i:45289795 original size:6 final size:6
Alignment explanation
Indices: 45289784--45289812 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
45289774 AGGACTTAAG
45289784 TCTGAA TCTGAA TCTGAA TCTGAA TCTGA
1 TCTGAA TCTGAA TCTGAA TCTGAA TCTGA
45289813 CTGCGTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (6 bp):
TCTGAA
Found at i:45295729 original size:17 final size:17
Alignment explanation
Indices: 45295707--45295746 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
45295697 TGTGGTTGGT
45295707 CGTGTGCGAGACACAAC
1 CGTGTGCGAGACACAAC
*
45295724 CGTGTGTGAGACACAAC
1 CGTGTGCGAGACACAAC
45295741 CGTGTG
1 CGTGTG
45295747 GTGGTGTGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.33, T:0.17
Consensus pattern (17 bp):
CGTGTGCGAGACACAAC
Found at i:45299416 original size:20 final size:20
Alignment explanation
Indices: 45299391--45299444 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
45299381 TTGTACGGGA
45299391 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
45299411 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
45299431 TTGCACTTTGGTGC
1 TTGCACTTTGGTGC
45299445 TCCCTAGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.06, C:0.24, G:0.26, T:0.44
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTGT
Found at i:45299996 original size:19 final size:18
Alignment explanation
Indices: 45299967--45300004 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
45299957 GGTTTCGAAG
*
45299967 TTGTTAAATTTGAAGTTC
1 TTGTTAAATTTAAAGTTC
45299985 TTGTTGAAATTTAAAGTTC
1 TTGTT-AAATTTAAAGTTC
45300004 T
1 T
45300005 ATATAAAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.29, C:0.05, G:0.16, T:0.50
Consensus pattern (18 bp):
TTGTTAAATTTAAAGTTC
Found at i:45301172 original size:22 final size:22
Alignment explanation
Indices: 45301145--45301195 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
45301135 CCACAAGAAA
45301145 CAAAGAAACTCATAATAATCTC
1 CAAAGAAACTCATAATAATCTC
45301167 CAAAGAAACTCATAATAATCTC
1 CAAAGAAACTCATAATAATCTC
45301189 CAAAGAA
1 CAAAGAA
45301196 GTCAAAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.53, C:0.22, G:0.06, T:0.20
Consensus pattern (22 bp):
CAAAGAAACTCATAATAATCTC
Found at i:45303614 original size:22 final size:22
Alignment explanation
Indices: 45303586--45303629 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
45303576 CAAAAGATAC
45303586 AATTGGCATGCCAATAGGGGTA
1 AATTGGCATGCCAATAGGGGTA
45303608 AATTGGCATGCCAATAGGGGTA
1 AATTGGCATGCCAATAGGGGTA
45303630 TTTTTTACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.32, T:0.23
Consensus pattern (22 bp):
AATTGGCATGCCAATAGGGGTA
Found at i:45305268 original size:20 final size:19
Alignment explanation
Indices: 45305243--45305294 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
45305233 TTTAATTAGC
*
45305243 CTTAATTAATCATATTTTAT
1 CTTAATTAATCATAATTT-T
45305263 CTTAATTAAAT-ATAATTTT
1 CTTAATT-AATCATAATTTT
45305282 CTTAATTAATCAT
1 CTTAATTAATCAT
45305295 TAGGAACCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.10
19 10 0.34
20 13 0.45
21 3 0.10
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (19 bp):
CTTAATTAATCATAATTTT
Found at i:45305918 original size:33 final size:34
Alignment explanation
Indices: 45305862--45305938 Score: 111
Period size: 33 Copynumber: 2.3 Consensus size: 34
45305852 CATTATCAAC
*
45305862 CATACCAAAACATCCTCGAAAAACATGTTCAAAT
1 CATACCTAAACATCCTCGAAAAACATGTTCAAAT
* * *
45305896 CATGCCTAAACATGCTC-AAAAACATGTTCCAAT
1 CATACCTAAACATCCTCGAAAAACATGTTCAAAT
45305929 CATACCTAAA
1 CATACCTAAA
45305939 TAATAACTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
33 24 0.63
34 14 0.37
ACGTcount: A:0.44, C:0.27, G:0.06, T:0.22
Consensus pattern (34 bp):
CATACCTAAACATCCTCGAAAAACATGTTCAAAT
Found at i:45308310 original size:26 final size:23
Alignment explanation
Indices: 45308245--45308300 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
45308235 ACGATATCCA
* * *
45308245 AACAATATTAAAAGTGGTAGCGG
1 AACAACATTAAAAGTAGCAGCGG
*
45308268 AACAAGATTAAAAGTAGCAGCGG
1 AACAACATTAAAAGTAGCAGCGG
45308291 AACAACATTA
1 AACAACATTA
45308301 CAAACGGTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.48, C:0.12, G:0.21, T:0.18
Consensus pattern (23 bp):
AACAACATTAAAAGTAGCAGCGG
Found at i:45310930 original size:22 final size:22
Alignment explanation
Indices: 45310888--45310933 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
45310878 TATTTTATAT
45310888 ATTTTACATTTTAATTAATTTA
1 ATTTTACATTTTAATTAATTTA
*
45310910 ATTTTA-ATTTTAATATTATTTA
1 ATTTTACATTTTAAT-TAATTTA
45310932 AT
1 AT
45310934 CAAAACCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (22 bp):
ATTTTACATTTTAATTAATTTA
Found at i:45322139 original size:30 final size:29
Alignment explanation
Indices: 45322067--45322139 Score: 78
Period size: 31 Copynumber: 2.5 Consensus size: 29
45322057 AATAAACACC
45322067 AAAAAT-T-TATTTTAAAAATAAAAAATA
1 AAAAATATATATTTTAAAAATAAAAAATA
* * *
45322094 ACAAAAAAAAGTATTTTAAAATTAAAAAAATA
1 A-AAAATATA-TATTTTAAAAAT-AAAAAATA
45322126 AAAAATATATATTT
1 AAAAATATATATTT
45322140 ATTATATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
27 1 0.03
28 4 0.11
30 5 0.14
31 17 0.47
32 9 0.25
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (29 bp):
AAAAATATATATTTTAAAAATAAAAAATA
Found at i:45327351 original size:9 final size:9
Alignment explanation
Indices: 45327316--45327357 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
45327306 TGGTGAAGAG
*
45327316 AGAGAGAGGG
1 AGAG-GAGGA
45327326 AGAGGA-GA
1 AGAGGAGGA
45327334 GAGAGGAGGA
1 -AGAGGAGGA
45327344 AGAGGAGGA
1 AGAGGAGGA
45327353 AGAGG
1 AGAGG
45327358 GACATGTTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 1 0.03
9 22 0.76
10 6 0.21
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (9 bp):
AGAGGAGGA
Found at i:45329639 original size:15 final size:15
Alignment explanation
Indices: 45329619--45329647 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
45329609 CATGCAAATT
45329619 AGAAAAGAAAGAAAA
1 AGAAAAGAAAGAAAA
45329634 AGAAAAGAAAGAAA
1 AGAAAAGAAAGAAA
45329648 GAAATGTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (15 bp):
AGAAAAGAAAGAAAA
Found at i:45333347 original size:42 final size:42
Alignment explanation
Indices: 45333300--45333462 Score: 166
Period size: 42 Copynumber: 3.9 Consensus size: 42
45333290 GCACATAAGT
* * ***
45333300 GCTAAACAGAAACCCATAAGGGTTGAACGGAAGCTTGTAAGA
1 GCTAAACGGAAACCCATAAGGGTTAAACGGAAGCTCAAAAGA
* * *
45333342 GCTAAACGGAAGCCTATAAGGGTTAAACTGAAGCTCAAAAGA
1 GCTAAACGGAAACCCATAAGGGTTAAACGGAAGCTCAAAAGA
* * * * * *
45333384 GCTGAACGGGAACCCATTAGGGTTGACCTGAAGCTCAAAAGA
1 GCTAAACGGAAACCCATAAGGGTTAAACGGAAGCTCAAAAGA
* *
45333426 GCTGAACGGAAACCCATTAA-GGTTAAACGGAAACTCA
1 GCTAAACGGAAACCCA-TAAGGGTTAAACGGAAGCTCA
45333463 TATAAGTTAA
Statistics
Matches: 99, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 97 0.98
43 2 0.02
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.17
Consensus pattern (42 bp):
GCTAAACGGAAACCCATAAGGGTTAAACGGAAGCTCAAAAGA
Found at i:45333361 original size:21 final size:21
Alignment explanation
Indices: 45333325--45333392 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
45333315 ATAAGGGTTG
* *
45333325 AACGGAAGCTTGTAAGAGCTA
1 AACGGAAGCCTATAAGAGCTA
* *
45333346 AACGGAAGCCTATAAGGGTTA
1 AACGGAAGCCTATAAGAGCTA
* * *
45333367 AACTGAAG-CTCAAAAGAGCTG
1 AACGGAAGCCT-ATAAGAGCTA
45333388 AACGG
1 AACGG
45333393 GAACCCATTA
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
20 2 0.06
21 34 0.94
ACGTcount: A:0.40, C:0.16, G:0.28, T:0.16
Consensus pattern (21 bp):
AACGGAAGCCTATAAGAGCTA
Found at i:45333456 original size:21 final size:21
Alignment explanation
Indices: 45333430--45333472 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
45333420 AAAAGAGCTG
45333430 AACGGAAACCCAT-TAAGGTTA
1 AACGGAAACCCATATAA-GTTA
*
45333451 AACGGAAACTCATATAAGTTA
1 AACGGAAACCCATATAAGTTA
45333472 A
1 A
45333473 CAGAACCTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (21 bp):
AACGGAAACCCATATAAGTTA
Found at i:45335861 original size:3 final size:3
Alignment explanation
Indices: 45335853--45335897 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
45335843 TATACTAAAT
45335853 ATA ATA ATA AT- ATA AT- ATA ATA ATA ATA AT- ATA AT- ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
45335896 AT
1 AT
45335898 TAAAAAAATC
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
2 10 0.27
3 27 0.73
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:45335867 original size:5 final size:5
Alignment explanation
Indices: 45335850--45335897 Score: 64
Period size: 5 Copynumber: 9.6 Consensus size: 5
45335840 TTATATACTA
45335850 AATAT AATAAT AATAT AATAT -A-AT AATAAT AATAT AATAT AATAT AAT
1 AATAT AAT-AT AATAT AATAT AATAT AAT-AT AATAT AATAT AATAT AAT
45335898 TAAAAAAATC
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
3 2 0.05
4 2 0.05
5 25 0.64
6 10 0.26
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:45335877 original size:19 final size:19
Alignment explanation
Indices: 45335853--45335897 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
45335843 TATACTAAAT
45335853 ATAATAATAATATAATATA
1 ATAATAATAATATAATATA
45335872 ATAATAATAATATAATATA
1 ATAATAATAATATAATATA
45335891 AT-ATAAT
1 ATAATAAT
45335898 TAAAAAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
ATAATAATAATATAATATA
Found at i:45338806 original size:32 final size:32
Alignment explanation
Indices: 45338770--45338833 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
45338760 TGATAATTTG
45338770 TTACATTACATGGTATTGAAATTTAAGGTACT
1 TTACATTACATGGTATTGAAATTTAAGGTACT
45338802 TTACATTACATGGTATTGAAATTTAAGGTACT
1 TTACATTACATGGTATTGAAATTTAAGGTACT
45338834 AAGGAGCTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (32 bp):
TTACATTACATGGTATTGAAATTTAAGGTACT
Found at i:45339254 original size:13 final size:13
Alignment explanation
Indices: 45339236--45339309 Score: 94
Period size: 13 Copynumber: 5.7 Consensus size: 13
45339226 CTCAAATTTT
45339236 TCAAAAGCACTTC
1 TCAAAAGCACTTC
*
45339249 TCAAAATCACTTC
1 TCAAAAGCACTTC
*
45339262 TCAAAAGCACTTT
1 TCAAAAGCACTTC
* *
45339275 TCCACAGCACTTC
1 TCAAAAGCACTTC
* *
45339288 TCAAAAGTACTTT
1 TCAAAAGCACTTC
45339301 TCAAAAGCA
1 TCAAAAGCA
45339310 ATGAAGAACT
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.38, C:0.28, G:0.07, T:0.27
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:45343265 original size:2 final size:2
Alignment explanation
Indices: 45343258--45343294 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
45343248 CATTTTAACA
45343258 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45343295 ACTTAAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:45347298 original size:26 final size:26
Alignment explanation
Indices: 45347269--45347319 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
45347259 TGTTCATTTC
45347269 TTCTCTTTTCTCT-T-TTCTATCTTCTA
1 TTCT-TTTTCTCTCTATTC-ATCTTCTA
45347295 TTCTTTTTCTCTCTATTCATCTTCT
1 TTCTTTTTCTCTCTATTCATCTTCT
45347320 TCTAGCCCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 8 0.35
26 12 0.52
27 3 0.13
ACGTcount: A:0.08, C:0.27, G:0.00, T:0.65
Consensus pattern (26 bp):
TTCTTTTTCTCTCTATTCATCTTCTA
Found at i:45349664 original size:17 final size:19
Alignment explanation
Indices: 45349642--45349676 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
45349632 ATATATACTT
45349642 TTATTTA-TATTT-TTTTA
1 TTATTTACTATTTATTTTA
45349659 TTATTTACTATTTATTTT
1 TTATTTACTATTTATTTT
45349677 TTTTCTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 5 0.31
19 4 0.25
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (19 bp):
TTATTTACTATTTATTTTA
Found at i:45352526 original size:27 final size:27
Alignment explanation
Indices: 45352488--45352542 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
45352478 TTTATTTAAT
45352488 CATCCAACTTACTCAAATGATCATATA
1 CATCCAACTTACTCAAATGATCATATA
45352515 CATCCAACTTACTCAAATGATCATATA
1 CATCCAACTTACTCAAATGATCATATA
45352542 C
1 C
45352543 TTACTTAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.27, G:0.04, T:0.29
Consensus pattern (27 bp):
CATCCAACTTACTCAAATGATCATATA
Found at i:45353313 original size:23 final size:25
Alignment explanation
Indices: 45353250--45353320 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 25
45353240 GCACTCTTTC
* * *
45353250 GAGCTATATAACAAGAAGCTCATGT
1 GAGCCATATAACAGGAAGCTCATCT
* *
45353275 GAGCCATGTAACAGGAAGCTTATCT
1 GAGCCATATAACAGGAAGCTCATCT
*
45353300 GAG-C-TATAACAGGAAACTCAT
1 GAGCCATATAACAGGAAGCTCAT
45353321 AAGAGTTTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
23 14 0.37
24 1 0.03
25 23 0.61
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTCATCT
Found at i:45353370 original size:45 final size:47
Alignment explanation
Indices: 45353284--45353372 Score: 119
Period size: 45 Copynumber: 1.9 Consensus size: 47
45353274 TGAGCCATGT
* * *
45353284 AACAGGAAGCTTATCTGAGCTATAACAGGAAACTCATAAGAGTTTAA
1 AACAGGAAACTTATCTAAGCTATAACAGGAAACTCAGAAGAGTTTAA
* *
45353331 AACAGGAAACTTAT-TAAGCT-TAACAGGTAACTCCGAAGAGTT
1 AACAGGAAACTTATCTAAGCTATAACAGGAAACTCAGAAGAGTT
45353373 ATTATCAAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
45 19 0.51
46 5 0.14
47 13 0.35
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.24
Consensus pattern (47 bp):
AACAGGAAACTTATCTAAGCTATAACAGGAAACTCAGAAGAGTTTAA
Found at i:45353451 original size:25 final size:24
Alignment explanation
Indices: 45353417--45353469 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
45353407 AAGTTCAAGC
45353417 GAGCCATATC-AGGAAACTCATAAA
1 GAGCCATATCGA-GAAACTCATAAA
**
45353441 GAGCCTATATCGAGATGCTCATAAA
1 GAGCC-ATATCGAGAAACTCATAAA
45353466 GAGC
1 GAGC
45353470 TACAGTATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 19 0.76
26 1 0.04
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (24 bp):
GAGCCATATCGAGAAACTCATAAA
Found at i:45359825 original size:18 final size:17
Alignment explanation
Indices: 45359774--45359825 Score: 52
Period size: 18 Copynumber: 3.1 Consensus size: 17
45359764 CCCAGTTTGA
* *
45359774 TTTTAAATT-TATAATA
1 TTTTATATTATATAATT
* *
45359790 TTTTATATTATGTTATT
1 TTTTATATTATATAATT
45359807 TTTATATATTATATAATT
1 TTT-TATATTATATAATT
45359825 T
1 T
45359826 ATAACACGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
16 8 0.29
17 7 0.25
18 13 0.46
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
TTTTATATTATATAATT
Found at i:45362568 original size:42 final size:44
Alignment explanation
Indices: 45362509--45362590 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
45362499 CTGTTTAAGG
*
45362509 TCGTGATTTGTTTTTG-TT-ATAATTGTGTTTAAGGTATTATGA
1 TCGTGATTTGTTTTTGTTTCATAATTGCGTTTAAGGTATTATGA
*
45362551 TCGTG-TTGTGTTTTTGTTTCATAATTGCGTTTGAGGTATT
1 TCGTGATT-TGTTTTTGTTTCATAATTGCGTTTAAGGTATT
45362591 CATGTTAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
41 2 0.06
42 13 0.37
43 2 0.06
44 18 0.51
ACGTcount: A:0.17, C:0.05, G:0.23, T:0.55
Consensus pattern (44 bp):
TCGTGATTTGTTTTTGTTTCATAATTGCGTTTAAGGTATTATGA
Found at i:45365678 original size:18 final size:19
Alignment explanation
Indices: 45365643--45365683 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
45365633 TTAATTTTTA
*
45365643 AAAAAATATATAATACA-T
1 AAAAAATATATAAAACATT
45365661 AAAAAATACTA-AAAACATT
1 AAAAAATA-TATAAAACATT
45365680 AAAA
1 AAAA
45365684 TAAATGTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAAATATATAAAACATT
Found at i:45373832 original size:30 final size:30
Alignment explanation
Indices: 45373781--45373865 Score: 77
Period size: 30 Copynumber: 2.9 Consensus size: 30
45373771 TGAAAAAGTA
45373781 AAAAG-TGATGGAGTCAAAGTGTGAATATTT-
1 AAAAGTTGATGGAGTCAAAGTGT-AA-ATTTG
* *
45373811 AAAAGTTGATGG-GTTATAGTGTAAATTTG
1 AAAAGTTGATGGAGTCAAAGTGTAAATTTG
* * * *
45373840 AAAAATTGAAGGACTAAAAGTGTAAA
1 AAAAGTTGATGGAGTCAAAGTGTAAA
45373866 AAACCAAAAG
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
28 4 0.09
29 12 0.27
30 23 0.51
31 6 0.13
ACGTcount: A:0.44, C:0.02, G:0.25, T:0.29
Consensus pattern (30 bp):
AAAAGTTGATGGAGTCAAAGTGTAAATTTG
Found at i:45376956 original size:35 final size:35
Alignment explanation
Indices: 45376900--45377002 Score: 120
Period size: 34 Copynumber: 3.0 Consensus size: 35
45376890 TTCACTATTT
*
45376900 ATTCGTCGGTTTATCTTACTAGCGCTGGGCGCAAC
1 ATTCGTCGGTTTATCTGACTAGCGCTGGGCGCAAC
* * * *
45376935 -TTCCGTCAGTTTATCTGACTAGTGCTGGACAC-AC
1 ATT-CGTCGGTTTATCTGACTAGCGCTGGGCGCAAC
* *
45376969 ATTTGTCGGTTTATCTGACTAGCGCAGGGCGCAA
1 ATTCGTCGGTTTATCTGACTAGCGCTGGGCGCAA
45377003 ACTCTTTCGC
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
34 27 0.50
35 27 0.50
ACGTcount: A:0.19, C:0.24, G:0.25, T:0.31
Consensus pattern (35 bp):
ATTCGTCGGTTTATCTGACTAGCGCTGGGCGCAAC
Found at i:45376956 original size:74 final size:72
Alignment explanation
Indices: 45376821--45377003 Score: 169
Period size: 74 Copynumber: 2.6 Consensus size: 72
45376811 AATAAATAAA
* * * **
45376821 TATTTATTCGTCGGTTTATCTGACTAGCGTTGGGCTCAAATATTGTTGGTATATTCAACTAGAGC
1 TATTTATTCGTCGGTTTATCTGACTAGCGCTGGGCGCAAATATCGTCAGTATATTCAACTAGAGC
*
45376886 TGGGTTCAC
66 T-GG-ACAC
* * * * *
45376895 TATTTATTCGTCGGTTTATCTTACTAGCGCTGGGCGCAACT-TCCGTCAGTTTA-TCTGACTAGT
1 TATTTATTCGTCGGTTTATCTGACTAGCGCTGGGCGCAAATAT-CGTCAGTATATTC-AACTAGA
45376958 GCTGGACAC
64 GCTGGACAC
* * *
45376967 -A--CATTTGTCGGTTTATCTGACTAGCGCAGGGCGCAAA
1 TATTTATTCGTCGGTTTATCTGACTAGCGCTGGGCGCAAA
45377004 CTCTTTCGCA
Statistics
Matches: 91, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
69 31 0.34
71 1 0.01
72 3 0.03
73 5 0.05
74 51 0.56
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (72 bp):
TATTTATTCGTCGGTTTATCTGACTAGCGCTGGGCGCAAATATCGTCAGTATATTCAACTAGAGC
TGGACAC
Found at i:45379979 original size:21 final size:21
Alignment explanation
Indices: 45379955--45379996 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
45379945 GAAATTAAAA
45379955 TGTTTTAATTT-CACTTTAATT
1 TGTTTTAATTTCCA-TTTAATT
45379976 TGTTTTAATTTCCATTTAATT
1 TGTTTTAATTTCCATTTAATT
45379997 ACAAAATTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.24, C:0.10, G:0.05, T:0.62
Consensus pattern (21 bp):
TGTTTTAATTTCCATTTAATT
Found at i:45388387 original size:25 final size:25
Alignment explanation
Indices: 45388359--45388413 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
45388349 AGCTCTTTCG
* *
45388359 AGCCATGCAACGGGAAGCTCATGTA
1 AGCCATACAACGGGAAGCTCATGCA
* * *
45388384 AGCCATATAATGGGAAGCTCTTGCA
1 AGCCATACAACGGGAAGCTCATGCA
45388409 AGCCA
1 AGCCA
45388414 ATTATCAAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18
Consensus pattern (25 bp):
AGCCATACAACGGGAAGCTCATGCA
Found at i:45392780 original size:6 final size:6
Alignment explanation
Indices: 45392769--45392814 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
45392759 TAGCGGAAAA
*
45392769 AAATAT AAATAT AAATAT AAATA- AACATAT ATATAAT AAA-AT AAAT
1 AAATAT AAATAT AAATAT AAATAT AA-ATAT AAAT-AT AAATAT AAAT
45392815 TTAATAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
5 7 0.21
6 22 0.65
7 5 0.15
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (6 bp):
AAATAT
Found at i:45392802 original size:16 final size:15
Alignment explanation
Indices: 45392773--45392821 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 15
45392763 GGAAAAAAAT
*
45392773 ATAAATATAAATATAA
1 ATAAACATAAATAT-A
*
45392789 ATAAACATATATATA
1 ATAAACATAAATATA
*
45392804 ATAAA-ATAAATTTA
1 ATAAACATAAATATA
45392818 ATAA
1 ATAA
45392822 TTTATATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 11 0.38
15 6 0.21
16 12 0.41
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAACATAAATATA
Found at i:45395374 original size:15 final size:15
Alignment explanation
Indices: 45395354--45395382 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
45395344 TTATTATAAT
45395354 TGTGTATATATATTG
1 TGTGTATATATATTG
45395369 TGTGTATATATATT
1 TGTGTATATATATT
45395383 ATATGCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (15 bp):
TGTGTATATATATTG
Found at i:45396061 original size:110 final size:110
Alignment explanation
Indices: 45395868--45396088 Score: 415
Period size: 110 Copynumber: 2.0 Consensus size: 110
45395858 GCCAAATGAA
45395868 GGTTAAAAATATCTGCTAATATAAATTCTATACTTATGCTTAATGGGACTAATTTCAATGAATGA
1 GGTTAAAAATATCTGCTAATATAAATTCTATACTTATGCTTAATGGGACTAATTTCAATGAATGA
*
45395933 AAAAAGCACTTACTTATAGTGTTTGGTTGTATGAACATAGACATT
66 AAAAAGCACTTACTTATAGTGTTTGGTTGTATGAACACAGACATT
*
45395978 GGTTAATAATATCTGCTAATATAAATTCTATACTTATGCTTAATGGGACTAATTTCAATGAATGA
1 GGTTAAAAATATCTGCTAATATAAATTCTATACTTATGCTTAATGGGACTAATTTCAATGAATGA
*
45396043 AAAAGGCACTTACTTATAGTGTTTGGTTGTATGAACACAGACATT
66 AAAAAGCACTTACTTATAGTGTTTGGTTGTATGAACACAGACATT
45396088 G
1 G
45396089 CACTAAGGGA
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 108 1.00
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (110 bp):
GGTTAAAAATATCTGCTAATATAAATTCTATACTTATGCTTAATGGGACTAATTTCAATGAATGA
AAAAAGCACTTACTTATAGTGTTTGGTTGTATGAACACAGACATT
Found at i:45408155 original size:22 final size:23
Alignment explanation
Indices: 45408130--45408173 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
45408120 AAAATAATTA
* *
45408130 CAAAACTGTGGCAA-AACAACAC
1 CAAAACAGTGGAAACAACAACAC
45408152 CAAAACAGTGGAAACAACAACA
1 CAAAACAGTGGAAACAACAACA
45408174 TTTTCTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.55, C:0.25, G:0.14, T:0.07
Consensus pattern (23 bp):
CAAAACAGTGGAAACAACAACAC
Found at i:45410099 original size:22 final size:22
Alignment explanation
Indices: 45410050--45410099 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
45410040 ATTTATGTTG
*
45410050 TTTTATTTGTTTACTTTTAAAT
1 TTTTATTTGATTACTTTTAAAT
** * *
45410072 ACTTATTTGATTATTTTTTAAT
1 TTTTATTTGATTACTTTTAAAT
45410094 TTTTAT
1 TTTTAT
45410100 AGTTTTTGAA
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.68
Consensus pattern (22 bp):
TTTTATTTGATTACTTTTAAAT
Found at i:45415681 original size:32 final size:31
Alignment explanation
Indices: 45415645--45415744 Score: 100
Period size: 32 Copynumber: 3.3 Consensus size: 31
45415635 CTCAAGAAAT
*
45415645 TATAAATAAATTAAAAATTA-AATAAATTAATA
1 TATAAA-AAATTAAAAATTATAA-AAAATAATA
**
45415677 TATAAAAAAATTTTAAATTATAAAAAATAATA
1 TAT-AAAAAATTAAAAATTATAAAAAATAATA
* *
45415709 TATAAAAAATAAAAAACTAT--AAAAT-ATA
1 TATAAAAAATTAAAAATTATAAAAAATAATA
45415737 TATAAAAA
1 TATAAAAA
45415745 CAAACTCTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
28 11 0.19
29 5 0.08
31 13 0.22
32 25 0.42
33 5 0.08
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (31 bp):
TATAAAAAATTAAAAATTATAAAAAATAATA
Found at i:45415682 original size:16 final size:14
Alignment explanation
Indices: 45415645--45415718 Score: 51
Period size: 16 Copynumber: 4.7 Consensus size: 14
45415635 CTCAAGAAAT
45415645 TATAAATAAATTAAA
1 TATAAA-AAATTAAA
*
45415660 AATTAAATAAATTAATA
1 TA-TAAA-AAATTAA-A
45415677 TATAAAAAAATTTTAAA
1 TAT-AAAAAA--TTAAA
45415694 TTATAAAAAA-TAATA
1 -TATAAAAAATTAA-A
45415709 TATAAAAAAT
1 TATAAAAAAT
45415719 AAAAAACTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
14 12 0.24
15 2 0.04
16 16 0.33
17 12 0.24
18 7 0.14
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
TATAAAAAATTAAA
Found at i:45415710 original size:30 final size:29
Alignment explanation
Indices: 45415673--45415744 Score: 81
Period size: 31 Copynumber: 2.4 Consensus size: 29
45415663 TAAATAAATT
*** *
45415673 AATATATAAAAAAATTTTAAATTATAAAA
1 AATATATAAAAAAATAAAAAACTATAAAA
45415702 AATAATATATAAAAAATAAAAAACTATAAAA
1 AAT-ATATA-AAAAAATAAAAAACTATAAAA
*
45415733 TATATATAAAAA
1 AATATATAAAAA
45415745 CAAACTCTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 7 0.19
30 10 0.28
31 19 0.53
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.29
Consensus pattern (29 bp):
AATATATAAAAAAATAAAAAACTATAAAA
Found at i:45428699 original size:21 final size:21
Alignment explanation
Indices: 45428664--45428732 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 21
45428654 ATGAATGTTG
45428664 TTTAAATTTATCATATAATTAT
1 TTTAAATTTATCATAT-ATTAT
*
45428686 TTTAAGTTT-TCATATATTAT
1 TTTAAATTTATCATATATTAT
* *
45428706 TCTTCAAATTTATTATGTATTAT
1 T-TT-AAATTTATCATATATTAT
45428729 TTTA
1 TTTA
45428733 TACATTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 6 0.15
21 9 0.22
22 15 0.38
23 10 0.25
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (21 bp):
TTTAAATTTATCATATATTAT
Found at i:45432427 original size:7 final size:7
Alignment explanation
Indices: 45432410--45432438 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
45432400 TTTGGGAAAC
45432410 AAAAT-A
1 AAAATAA
45432416 AAAATAA
1 AAAATAA
45432423 AAAATAA
1 AAAATAA
45432430 AAAATAA
1 AAAATAA
45432437 AA
1 AA
45432439 TTAAAGTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.23
7 17 0.77
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAATAA
Found at i:45437596 original size:67 final size:67
Alignment explanation
Indices: 45437483--45437617 Score: 209
Period size: 67 Copynumber: 2.0 Consensus size: 67
45437473 TATGAGTTTA
* *
45437483 TATTACAGGGGATTTTGCCTGGACTGGTAATCCCGTTGTAAGAAATGAGGTTCGC-GGTAGTGTG
1 TATTACAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCAGG-AGTGTG
45437547 CTC
65 CTC
* * *
45437550 TATTGCAGGGGATTTAGCTTGGACTGGTGATCCCGCTGTAAGAAATGAGGTTCGCAGGAGTGTGC
1 TATTACAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCAGGAGTGTGC
45437615 TC
66 TC
45437617 T
1 T
45437618 CTGAATTGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
67 60 0.97
68 2 0.03
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (67 bp):
TATTACAGGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCAGGAGTGTGC
TC
Found at i:45438620 original size:3 final size:3
Alignment explanation
Indices: 45438614--45438653 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
45438604 AAATATGTTG
*
45438614 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TAA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
45438654 ATTGTGAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:45438790 original size:23 final size:25
Alignment explanation
Indices: 45438763--45438810 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 25
45438753 TAAATTTTAA
45438763 GTGAAAGTATT-TA-TATATTATAT
1 GTGAAAGTATTATATTATATTATAT
*
45438786 GTGAAATTATTATATTATATTATAT
1 GTGAAAGTATTATATTATATTATAT
45438811 TAATAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.45
24 2 0.09
25 10 0.45
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (25 bp):
GTGAAAGTATTATATTATATTATAT
Found at i:45440371 original size:16 final size:16
Alignment explanation
Indices: 45440350--45440386 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
45440340 CGGTTGTACT
45440350 AGGTCATTAGGGTTCA
1 AGGTCATTAGGGTTCA
45440366 AGGTCATTAGGGTTCA
1 AGGTCATTAGGGTTCA
45440382 AGGTC
1 AGGTC
45440387 CAGTTCAGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (16 bp):
AGGTCATTAGGGTTCA
Found at i:45440497 original size:2 final size:2
Alignment explanation
Indices: 45440490--45440522 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
45440480 ACACGAGTTG
*
45440490 TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45440523 GCTAAATGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:45445556 original size:23 final size:23
Alignment explanation
Indices: 45445530--45445605 Score: 125
Period size: 23 Copynumber: 3.3 Consensus size: 23
45445520 ATAAGTGCCA
45445530 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
45445553 CACTGATACGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
45445576 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
45445599 CACTGAT
1 CACTGAT
45445606 CAATAACACT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:45446239 original size:21 final size:21
Alignment explanation
Indices: 45446215--45446259 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
45446205 CTTACTTATG
45446215 AACATTTTTCCCTTCTATGGT
1 AACATTTTTCCCTTCTATGGT
45446236 AACATTTTTCCCTTCTATGGT
1 AACATTTTTCCCTTCTATGGT
45446257 AAC
1 AAC
45446260 TCGTTTTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.44
Consensus pattern (21 bp):
AACATTTTTCCCTTCTATGGT
Found at i:45447266 original size:3 final size:3
Alignment explanation
Indices: 45447258--45447301 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
45447248 GCAAGAACAA
45447258 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
45447302 GATAAATAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:45447540 original size:2 final size:2
Alignment explanation
Indices: 45447501--45447528 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
45447491 TATATGTGTG
45447501 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45447529 AAAGAAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45449121 original size:43 final size:44
Alignment explanation
Indices: 45449052--45449135 Score: 109
Period size: 43 Copynumber: 1.9 Consensus size: 44
45449042 TCACCTGGGT
* *
45449052 CTTGTTGCTTCGATCCACTCCACTGC-ACTTC-AGAGAGATACGG
1 CTTGTAGCTTCAATCCACTCCACTGCAACTTCAAG-GAGATACGG
**
45449095 CTTGTAGCTTCAATCCACTCTGCTGCAACTTCAAGGAGATA
1 CTTGTAGCTTCAATCCACTCCACTGCAACTTCAAGGAGATA
45449136 AGACTTATTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
43 22 0.63
44 11 0.31
45 2 0.06
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (44 bp):
CTTGTAGCTTCAATCCACTCCACTGCAACTTCAAGGAGATACGG
Found at i:45449149 original size:44 final size:43
Alignment explanation
Indices: 45449056--45449181 Score: 105
Period size: 44 Copynumber: 2.9 Consensus size: 43
45449046 CTGGGTCTTG
* * * *
45449056 TTGCTTCGATCCACTCCACTGCACTTCAGAGAGATACGGCTTG
1 TTGCTTCAATCCACTCCACTGCACTTCAGAGAGATAAGACTTA
* **
45449099 TAGCTTCAATCCACTCTGCTGCAACTTCA-AGGAGATAAGACTTA
1 TTGCTTCAATCCACTCCACTGC-ACTTCAGA-GAGATAAGACTTA
* *
45449143 TTGCTTCAA-CCTGCTCCACTATG-ACTTCAGGGAGATAAG
1 TTGCTTCAATCC-ACTCCAC--TGCACTTCAGAGAGATAAG
45449182 GTTCGATTAG
Statistics
Matches: 65, Mismatches: 12, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
43 21 0.32
44 42 0.65
46 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (43 bp):
TTGCTTCAATCCACTCCACTGCACTTCAGAGAGATAAGACTTA
Found at i:45449357 original size:44 final size:44
Alignment explanation
Indices: 45449304--45449524 Score: 237
Period size: 44 Copynumber: 5.0 Consensus size: 44
45449294 TCATCGTTTT
* *
45449304 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTC
* * *
45449348 AATTTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTC
* * * * *
45449392 AACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGTCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGT-AGCTTC
* * * *
45449437 AGTCTGTTCCACTGCAACTTCAGGGAGATAAGACTTATTATGGTGT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAGTA-GCT-TC
* * * *
45449483 GATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAGCT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCT
45449525 CTTCGAGAAA
Statistics
Matches: 146, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
44 74 0.51
45 39 0.27
46 32 0.22
47 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTC
Found at i:45449895 original size:129 final size:128
Alignment explanation
Indices: 45449631--45449875 Score: 316
Period size: 129 Copynumber: 1.9 Consensus size: 128
45449621 ATCTGATGTG
* * * * *
45449631 ATCTGCTCTACTACAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTTCACTGCAATTTCA
1 ATCTGCTCTACTACAACTTCAGAGAGAAAAGATCCATCATTTTAATCCACTCCACTACAACTTCA
* * *
45449696 GGAAGATAGGATTGGTTTCTTCAATCTACTCCGCTGCAACTTTAGGGAGATAAGACTAGATGCA
66 GGAAGATAGGATTGGTTTCTT-AATCTACTCCACTGCAAATTCAGGGAGATAAGACTAGATGCA
* * ** *
45449760 ATCTGCTCTACTGCAACTTCAGATAGAAAAGATCTGTGATTTTAATCCACTCCACTACAACTTCA
1 ATCTGCTCTACTACAACTTCAGAGAGAAAAGATCCATCATTTTAATCCACTCCACTACAACTTCA
* *
45449825 -GAGAGATAGGATTGGTTT-TT-TTCTTCTCCACTGCAAATTCAGGGAGATAAG
66 GGA-AGATAGGATTGGTTTCTTAATCTACTCCACTGCAAATTCAGGGAGATAAG
45449876 GTTGGTGGCT
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
126 26 0.26
128 4 0.04
129 70 0.70
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (128 bp):
ATCTGCTCTACTACAACTTCAGAGAGAAAAGATCCATCATTTTAATCCACTCCACTACAACTTCA
GGAAGATAGGATTGGTTTCTTAATCTACTCCACTGCAAATTCAGGGAGATAAGACTAGATGCA
Found at i:45449975 original size:44 final size:44
Alignment explanation
Indices: 45449888--45450269 Score: 226
Period size: 44 Copynumber: 8.7 Consensus size: 44
45449878 TGGTGGCTTA
* *
45449888 AATCTGCTTCC-CTACTACCTT-GGGAAGATAAGAT-TCGCCATCTTC
1 AATCTGC-TCCACTACT-GCTTAGGG-AGATAAGATCT-GCAATCTTC
* ** *
45449933 GATCTGCTTTACTACTGCTTAGGGAGATAAGATCTACAATCTTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTC
* * * * * **** *
45449977 AACCTACTCCACTGCTGCTCAGGGAGATAAG-GCTGGTGGCTTA
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTC
* *
45450020 AATCTGCTTCC-CTACTACCTT-GGGAAGATAAGAT-TCGTC-GTCTTC
1 AATCTGC-TCCACTACT-GCTTAGGG-AGATAAGATCT-G-CAATCTTC
*
45450065 AATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTC
* * * * **** *
45450109 AACCTACTCCACTGCTGCTTAGGGAGATAAG-GCTGGTGGCTTA
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTC
* * * * **
45450152 AATCTGCTTCC-CTACTACCTTAGGAAGATAAGATTTTCCGTCTTC
1 AATCTGC-TCCACTACT-GCTTAGGGAGATAAGATCTGCAATCTTC
* *
45450197 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTT
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTC
* ** * *
45450241 AACCTATTCGACTACTGCTCAGGGAGATA
1 AATCTGCTCCACTACTGCTTAGGGAGATA
45450270 GGACTGGTGG
Statistics
Matches: 254, Mismatches: 66, Indels: 35
0.72 0.19 0.10
Matches are distributed among these distances:
43 33 0.13
44 170 0.67
45 51 0.20
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTC
Found at i:45450008 original size:132 final size:132
Alignment explanation
Indices: 45449863--45450298 Score: 685
Period size: 132 Copynumber: 3.3 Consensus size: 132
45449853 CACTGCAAAT
* *
45449863 TCAGGGAGATAAGGTTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCA
1 TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCG
** *
45449928 TCTTCGATCTGCTTTACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACCTACTCCACTGCT
45449993 GC
131 GC
*
45449995 TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGTCG
1 TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCG
* *
45450060 TCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACCTACTCCACTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACCTACTCCACTGCT
45450125 GC
131 GC
* * **
45450127 TTAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTTAGGAAGATAAGATTTTCCG
1 TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCG
* * * *
45450192 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTTAACCTATTCGACTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACCTACTCCACTGCT
45450257 GC
131 GC
** *
45450259 TCAGGGAGAT-AGGACTGGTGGCTTCGATCTGCTTCACTAC
1 TCAGGGAGATAAGG-CTGGTGGCTTAAATCTGCTTCCCTAC
45450299 CGGTACAGGA
Statistics
Matches: 280, Mismatches: 23, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
131 3 0.01
132 277 0.99
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (132 bp):
TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCG
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAACCTACTCCACTGCT
GC
Found at i:45450269 original size:88 final size:88
Alignment explanation
Indices: 45449913--45450269 Score: 251
Period size: 88 Copynumber: 4.1 Consensus size: 88
45449903 TACCTTGGGA
* * ** *
45449913 AGATAAGATTCGCCATCTTCGATCTGCTTTACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
1 AGATAAGATTTGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCA
*
45449978 ACCTACTCCACTGCTGCTCAGGG
66 ACCTACTCCACTACTGCTCAGGG
** **** * * *
45450001 AGATAAG-GCTGGTGGCTTAAATCTGCTTCC-CTACTACCTT-GGGAAGATAAGAT-TCGTC-GT
1 AGATAAGATTTGCCATCTTCAATCTGC-TCCACTACT-GCTTAGGG-AGATAAGATCT-G-CAAT
* *
45450061 CTTCAATCTACTCCACTACTGCTTAGGG
61 CTTCAACCTACTCCACTACTGCTCAGGG
* * * * * * **** *
45450089 AGATAAGATCTGCAATCTTCAACCTACTCCACTGCTGCTTAGGGAGATAAG-GCTGGTGGCTTAA
1 AGATAAGATTTGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCA
* * * * *
45450153 ATCTGCTTCC-CTACTACCTTAGGA
66 ACCTAC-TCCACTACT-GCTCAGGG
* * * *
45450177 AGATAAGATTTTCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTTA
1 AGATAAGATTTGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCA
* *
45450242 ACCTATTCGACTACTGCTCAGGG
66 ACCTACTCCACTACTGCTCAGGG
45450265 AGATA
1 AGATA
45450270 GGACTGGTGG
Statistics
Matches: 200, Mismatches: 55, Indels: 28
0.71 0.19 0.10
Matches are distributed among these distances:
87 35 0.17
88 131 0.65
89 34 0.17
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (88 bp):
AGATAAGATTTGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCA
ACCTACTCCACTACTGCTCAGGG
Found at i:45460009 original size:23 final size:23
Alignment explanation
Indices: 45459983--45460051 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
45459973 TAAAATACAT
45459983 ACATTTATAATAATTATTACTTA
1 ACATTTATAATAATTATTACTTA
* * * * * *
45460006 ACATGTGTAACATTTAAATACAT-
1 ACATTTATAATAATT-ATTACTTA
45460029 ACATTTATAATAATTATTACTTA
1 ACATTTATAATAATTATTACTTA
45460052 CTTATTATTT
Statistics
Matches: 32, Mismatches: 12, Indels: 4
0.67 0.25 0.08
Matches are distributed among these distances:
22 5 0.16
23 22 0.69
24 5 0.16
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.43
Consensus pattern (23 bp):
ACATTTATAATAATTATTACTTA
Found at i:45460038 original size:46 final size:47
Alignment explanation
Indices: 45459959--45460051 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 47
45459949 ATTGGAAATG
45459959 ACATGTGTAACATTTAAAATACATACATTTATAATAATTATTACTTA
1 ACATGTGTAACATTTAAAATACATACATTTATAATAATTATTACTTA
45460006 ACATGTGTAACATTT-AAATACATACATTTATAATAATTATTACTTA
1 ACATGTGTAACATTTAAAATACATACATTTATAATAATTATTACTTA
45460052 CTTATTATTT
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 31 0.67
47 15 0.33
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.41
Consensus pattern (47 bp):
ACATGTGTAACATTTAAAATACATACATTTATAATAATTATTACTTA
Found at i:45460184 original size:13 final size:12
Alignment explanation
Indices: 45460136--45460202 Score: 57
Period size: 13 Copynumber: 5.3 Consensus size: 12
45460126 GAAAAAGAAT
45460136 AAAAAGAAGAAGA
1 AAAAAG-AGAAGA
*
45460149 ACAAAGTAGAACG-
1 AAAAAG-AGAA-GA
*
45460162 AAACAGAGAAGA
1 AAAAAGAGAAGA
45460174 AAAAGAGAGAAAGA
1 AAAA-AGAG-AAGA
45460188 AAAAAGAGAA-A
1 AAAAAGAGAAGA
45460199 AAAA
1 AAAA
45460203 TTAGGGTTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
11 6 0.13
12 9 0.20
13 21 0.47
14 9 0.20
ACGTcount: A:0.72, C:0.04, G:0.22, T:0.01
Consensus pattern (12 bp):
AAAAAGAGAAGA
Found at i:45460184 original size:25 final size:25
Alignment explanation
Indices: 45460136--45460202 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
45460126 GAAAAAGAAT
* *
45460136 AAAAAGAAGAAGAACAAAGTAGAACG-
1 AAAAAG-AGAAGAA-AAAGGAGAAAGA
*
45460162 AAACAGAGAAGAAAAAGAGAGAAAGA
1 AAAAAGAGAAGAAAAAG-GAGAAAGA
45460188 AAAAAGAGAA-AAAAA
1 AAAAAGAGAAGAAAAA
45460203 TTAGGGTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 4 0.11
25 17 0.49
26 14 0.40
ACGTcount: A:0.72, C:0.04, G:0.22, T:0.01
Consensus pattern (25 bp):
AAAAAGAGAAGAAAAAGGAGAAAGA
Found at i:45468163 original size:50 final size:50
Alignment explanation
Indices: 45468033--45468194 Score: 162
Period size: 50 Copynumber: 3.2 Consensus size: 50
45468023 TAACTCATAA
** * *
45468033 CTTTAATCTGTTTAACTGTGATGTCGAGGAAGCAAGATTCGCTATTGTAG
1 CTTTAATCTGTTTAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAG
* ** * ** * * * *
45468083 CTTCAATCTGTTCCACTACACCGCCCGGGAAGTAAGATTCACTGTTGTAG
1 CTTTAATCTGTTTAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAG
* * * *
45468133 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGGTGTGG
1 CTTTAATCTGTTTAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAG
45468183 CTTTAATCTGTT
1 CTTTAATCTGTT
45468195 CCACTGCATC
Statistics
Matches: 83, Mismatches: 29, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
50 83 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (50 bp):
CTTTAATCTGTTTAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAG
Found at i:45468167 original size:100 final size:100
Alignment explanation
Indices: 45468033--45468219 Score: 257
Period size: 100 Copynumber: 1.9 Consensus size: 100
45468023 TAACTCATAA
** * *
45468033 CTTTAATCTGTTTAACTGTGATGTCGAGGAAGCAAGATTCGCTATTGTAGCTTCAATCTGTTCCA
1 CTTTAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCGCCAGTGTAGCTTCAATCTGTTCCA
45468098 CTACACCGCCCGGGAAGTAAGATTCACTGTTGTAG
66 CTACACCGCCCGGGAAGTAAGATTCACTGTTGTAG
* * * * *
45468133 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGGTGTGGCTTTAATCTGTTCCA
1 CTTTAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCGCCAGTGTAGCTTCAATCTGTTCCA
* * * *
45468198 CTGCATCGCCTGGGGAGTAAGA
66 CTACACCGCCCGGGAAGTAAGA
45468220 ATTGATATTC
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
100 74 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (100 bp):
CTTTAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCGCCAGTGTAGCTTCAATCTGTTCCA
CTACACCGCCCGGGAAGTAAGATTCACTGTTGTAG
Found at i:45468280 original size:43 final size:45
Alignment explanation
Indices: 45468209--45468297 Score: 110
Period size: 43 Copynumber: 2.0 Consensus size: 45
45468199 TGCATCGCCT
*
45468209 GGGGAGTAAGAATTGATATTCTCAGTCTGCCCCACTGTAACTTCA
1 GGGGAGTAAGAATTGATATTCTCAGTCTGCCCCACTGCAACTTCA
* * * * *
45468254 GGGG-GTAAGACTTG-TCTTCTTAGTCTGCTCTACTGCAACTTCA
1 GGGGAGTAAGAATTGATATTCTCAGTCTGCCCCACTGCAACTTCA
45468297 G
1 G
45468298 AGAGATAAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 25 0.66
44 9 0.24
45 4 0.11
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (45 bp):
GGGGAGTAAGAATTGATATTCTCAGTCTGCCCCACTGCAACTTCA
Found at i:45468581 original size:132 final size:132
Alignment explanation
Indices: 45468405--45468804 Score: 642
Period size: 132 Copynumber: 3.0 Consensus size: 132
45468395 ACCTGCTATT
*
45468405 TTCAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTT-GGTGGCTTAAATCTGCTTCCCACTAT
1 TTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGG-TTCGGTGGCTTAAATCTGCTTCCCACTAT
* * * *
45468469 CTTGGAAAGATAATATTTGTCGTCTTTGATCTGCTCTACTACTGTTTACGGAGATAAGATCTACA
65 CTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGTTTAAGGAGATAAGATCTACA
45468534 ATC
130 ATC
* *
45468537 TTCAACCTACTCCGCTGCTGCTTAGGGAGACAAGGTTCGGTGGCTTAAATCAGCTTCCCACTATC
1 TTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
* *
45468602 TTGGAAAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTACAA
66 TTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGTTTAAGGAGATAAGATCTACAA
45468667 TC
131 TC
45468669 TTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
1 TTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
* * * * *
45468734 ATAGAAAGATAAGATTTGCCGTCTTCT-ATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGCT
66 TTGGAAAGATAAGATTTGCCGTCTT-TGATCTGCTCCACTACTGTTTAAGGAGATAAGATCTACA
45468798 ATC
130 ATC
45468801 TTCA
1 TTCA
45468805 CTGATCTGTT
Statistics
Matches: 248, Mismatches: 18, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
131 2 0.01
132 245 0.99
133 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (132 bp):
TTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATC
TTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGTTTAAGGAGATAAGATCTACAA
TC
Found at i:45471690 original size:8 final size:8
Alignment explanation
Indices: 45471677--45471740 Score: 56
Period size: 8 Copynumber: 7.8 Consensus size: 8
45471667 ACCACATTTT
45471677 AATAAACA
1 AATAAACA
*
45471685 AATAAATGA
1 AATAAA-CA
* *
45471694 AACAGAATA
1 AATA-AACA
* *
45471703 ATTAAAGA
1 AATAAACA
45471711 AATAAACA
1 AATAAACA
*
45471719 AACAAACA
1 AATAAACA
45471727 AATAAACA
1 AATAAACA
45471735 AATAAA
1 AATAAA
45471741 TCAACCACAC
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
8 35 0.80
9 7 0.16
10 2 0.05
ACGTcount: A:0.72, C:0.09, G:0.05, T:0.14
Consensus pattern (8 bp):
AATAAACA
Found at i:45471733 original size:12 final size:12
Alignment explanation
Indices: 45471677--45471741 Score: 76
Period size: 12 Copynumber: 5.2 Consensus size: 12
45471667 ACCACATTTT
45471677 AATAAACAAATA
1 AATAAACAAATA
45471689 AATGAAACAGAATA
1 AAT-AAACA-AATA
* *
45471703 ATTAAAGAAATA
1 AATAAACAAATA
* *
45471715 AACAAACAAACA
1 AATAAACAAATA
45471727 AATAAACAAATA
1 AATAAACAAATA
45471739 AAT
1 AAT
45471742 CAACCACACC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
12 28 0.65
13 9 0.21
14 6 0.14
ACGTcount: A:0.71, C:0.09, G:0.05, T:0.15
Consensus pattern (12 bp):
AATAAACAAATA
Found at i:45471948 original size:4 final size:4
Alignment explanation
Indices: 45471934--45471969 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
45471924 ACATAGTTTA
*
45471934 AAAT GAAT AAAT AAAT AAAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT AAA
45471970 CACAAAACCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:45471954 original size:17 final size:17
Alignment explanation
Indices: 45471932--45471969 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
45471922 TAACATAGTT
*
45471932 TAAAATGAATAAATAAA
1 TAAAATAAATAAATAAA
45471949 TAAAATAAATAAATAAA
1 TAAAATAAATAAATAAA
45471966 TAAA
1 TAAA
45471970 CACAAAACCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
TAAAATAAATAAATAAA
Found at i:45473226 original size:21 final size:19
Alignment explanation
Indices: 45473178--45473232 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
45473168 TACAAAAATC
* *
45473178 TTTTTTGTTCTCTTCTCTG
1 TTTTTTCTTCTGTTCTCTG
45473197 TTGTTTTCTTCTGTTCTCTTG
1 TT-TTTTCTTCTGTTCTC-TG
*
45473218 TCTTTTTCTTTTGTT
1 T-TTTTTCTTCTGTT
45473233 GTTTTCTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 2 0.07
20 13 0.43
21 14 0.47
22 1 0.03
ACGTcount: A:0.00, C:0.18, G:0.11, T:0.71
Consensus pattern (19 bp):
TTTTTTCTTCTGTTCTCTG
Found at i:45483280 original size:18 final size:18
Alignment explanation
Indices: 45483245--45483280 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45483235 ACGAAGCGGT
* *
45483245 AATAATAATAGTAGTAAA
1 AATAATAATAATAATAAA
45483263 AATAATAATAATAATAAA
1 AATAATAATAATAATAAA
45483281 CAATCAGAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.28
Consensus pattern (18 bp):
AATAATAATAATAATAAA
Found at i:45485430 original size:3 final size:3
Alignment explanation
Indices: 45485415--45485464 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
45485405 ATATATTAGT
* * *
45485415 TAA TAA TAT TAA TAA TAA TAA TAA TAA TACA TTA CAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
45485460 TAA TA
1 TAA TA
45485465 TTTAATTCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 35 0.90
4 2 0.05
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Done.