Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 144 of 198
Found at i:45866490 original size:7 final size:7
Alignment explanation
Indices: 45866478--45866531 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
45866468 GTGTTACCAT
45866478 TTTATGG
1 TTTATGG
45866485 TTTATGG
1 TTTATGG
*
45866492 ATTATGGG
1 TTTAT-GG
*
45866500 TTTAGGG
1 TTTATGG
*
45866507 GTTATGG
1 TTTATGG
*
45866514 TTTAGGG
1 TTTATGG
*
45866521 TTTATAG
1 TTTATGG
45866528 TTTA
1 TTTA
45866532 AAGGCTGGGG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
7 32 0.86
8 5 0.14
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (7 bp):
TTTATGG
Found at i:45866503 original size:15 final size:14
Alignment explanation
Indices: 45866479--45866531 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
45866469 TGTTACCATT
*
45866479 TTATGGTTTATGGA
1 TTATGGTTTAGGGA
*
45866493 TTATGGGTTTAGGGG
1 TTAT-GGTTTAGGGA
*
45866508 TTATGGTTTAGGGT
1 TTATGGTTTAGGGA
*
45866522 TTATAGTTTA
1 TTATGGTTTA
45866532 AAGGCTGGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 22 0.65
15 12 0.35
ACGTcount: A:0.19, C:0.00, G:0.32, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGA
Found at i:45866573 original size:29 final size:28
Alignment explanation
Indices: 45866539--45866611 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
45866529 TTAAAGGCTG
45866539 GGGTTTAAGGTTTAGAGG-TTATGTGTTAA
1 GGGTTTAAGGTTTAGAGGTTTA-G-GTTAA
* *
45866568 GGGTTTATGGTTTTA-AGGTTTAGGTTTA
1 GGGTTTAAGG-TTTAGAGGTTTAGGTTAA
*
45866596 GGGTTTAAGATTTAGA
1 GGGTTTAAGGTTTAGA
45866612 TTAACTAGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
27 4 0.11
28 13 0.35
29 13 0.35
30 7 0.19
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (28 bp):
GGGTTTAAGGTTTAGAGGTTTAGGTTAA
Found at i:45866604 original size:20 final size:21
Alignment explanation
Indices: 45866569--45866610 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
45866559 ATGTGTTAAG
* *
45866569 GGTTTATGGTTTTAAGGTTTA
1 GGTTTATGGGTTTAAGATTTA
45866590 GGTTTA-GGGTTTAAGATTTA
1 GGTTTATGGGTTTAAGATTTA
45866610 G
1 G
45866611 ATTAACTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (21 bp):
GGTTTATGGGTTTAAGATTTA
Found at i:45867086 original size:15 final size:15
Alignment explanation
Indices: 45867066--45867095 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45867056 ACTATTTTAA
*
45867066 GGTTTATGGATTATG
1 GGTTTAGGGATTATG
45867081 GGTTTAGGGATTATG
1 GGTTTAGGGATTATG
45867096 ATTTATAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.43
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:45867150 original size:21 final size:21
Alignment explanation
Indices: 45867103--45867164 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
45867093 ATGATTTATA
* *
45867103 GTTTAAAGGTTGGGGTTTAAG
1 GTTTAAGGGTTAGGGTTTAAG
45867124 GTTTAAGGGTTAGGGTTTAATG
1 GTTTAAGGGTTAGGGTTTAA-G
*
45867146 G-TTAAGGGTTTAGGATTTA
1 GTTTAAGGG-TTAGGGTTTA
45867165 TGATTTATGA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 25 0.69
22 11 0.31
ACGTcount: A:0.24, C:0.00, G:0.35, T:0.40
Consensus pattern (21 bp):
GTTTAAGGGTTAGGGTTTAAG
Found at i:45867164 original size:7 final size:7
Alignment explanation
Indices: 45867154--45867192 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
45867144 TGGTTAAGGG
*
45867154 TTTAGGA
1 TTTATGA
45867161 TTTATGA
1 TTTATGA
45867168 TTTATGA
1 TTTATGA
45867175 TTTATGA
1 TTTATGA
45867182 TTTATGA
1 TTTATGA
45867189 TTTA
1 TTTA
45867193 GGGTTTAAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.56
Consensus pattern (7 bp):
TTTATGA
Found at i:45867199 original size:21 final size:21
Alignment explanation
Indices: 45867150--45867199 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
45867140 TTAATGGTTA
45867150 AGGGTTTAGGATTTATGATTT
1 AGGGTTTAGGATTTATGATTT
* * *
45867171 ATGATTTATGATTTATGATTT
1 AGGGTTTAGGATTTATGATTT
45867192 AGGGTTTA
1 AGGGTTTA
45867200 AGAGATAGGG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (21 bp):
AGGGTTTAGGATTTATGATTT
Found at i:45869559 original size:13 final size:13
Alignment explanation
Indices: 45869541--45869565 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45869531 AGTTCTTTAT
45869541 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
45869554 TGCTTTTGAGAA
1 TGCTTTTGAGAA
45869566 ATTTGAGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.28, T:0.40
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:45870179 original size:22 final size:21
Alignment explanation
Indices: 45870154--45870197 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
45870144 AAGCATATGA
*
45870154 AAATGATTTGGTTATATTCAAT
1 AAATGATTTGGTTA-ATACAAT
45870176 AAATGATTTGGTTAATACAAT
1 AAATGATTTGGTTAATACAAT
45870197 A
1 A
45870198 CTTATATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.41
Consensus pattern (21 bp):
AAATGATTTGGTTAATACAAT
Found at i:45870206 original size:22 final size:22
Alignment explanation
Indices: 45870181--45870251 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
45870171 TCAATAAATG
45870181 ATTTGGTTAATACAATACTTAT
1 ATTTGGTTAATACAATACTTAT
* * **
45870203 ATTT-GATAA-GCATATGA-AAAT
1 ATTTGGTTAATACA-AT-ACTTAT
45870224 GATTTGGTTAATACAATACTTAT
1 -ATTTGGTTAATACAATACTTAT
45870247 ATTTG
1 ATTTG
45870252 ATAAGCATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 2 0.06
21 8 0.23
22 15 0.43
23 8 0.23
24 2 0.06
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.42
Consensus pattern (22 bp):
ATTTGGTTAATACAATACTTAT
Found at i:45870224 original size:44 final size:44
Alignment explanation
Indices: 45870176--45870269 Score: 188
Period size: 44 Copynumber: 2.1 Consensus size: 44
45870166 TATATTCAAT
45870176 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
1 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
45870220 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
1 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
45870264 AAATGA
1 AAATGA
45870270 AAGTCGAAAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (44 bp):
AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
Found at i:45872876 original size:42 final size:41
Alignment explanation
Indices: 45872793--45873048 Score: 350
Period size: 42 Copynumber: 6.1 Consensus size: 41
45872783 ACCGACACTT
* * * *
45872793 AGCCTGCAAGACATATAGTCTGAAATGTTTCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGAATTGTTTCACCGGCATTA
*
45872834 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACCGGTATTA
1 AGCCTGCTAGACGTAAAGTCTGA-ATTGTTTCACCGGCATTA
*
45872876 AGCCTGCTAGACGTAAAGTCTGAAATTATTTCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTG-AATTGTTTCACCGGCATTA
*
45872918 AGCCTGCTAGACGTAAAGTCTAATATTGTTTCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGA-ATTGTTTCACCGGCATTA
* *
45872960 AGCCTGCTAGACGTAAAGTCTGAAATTATTTCACTGGCATTA
1 AGCCTGCTAGACGTAAAGTCTG-AATTGTTTCACCGGCATTA
* * * *
45873002 AGCCTGCTAGATGTAAAGTCTGAAATGTTTCACTGGCAATA
1 AGCCTGCTAGACGTAAAGTCTGAATTGTTTCACCGGCATTA
*
45873043 AACCTG
1 AGCCTG
45873049 ATAGGCACTG
Statistics
Matches: 194, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
41 42 0.22
42 150 0.77
43 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAATTGTTTCACCGGCATTA
Found at i:45872925 original size:84 final size:84
Alignment explanation
Indices: 45872793--45873048 Score: 390
Period size: 84 Copynumber: 3.1 Consensus size: 84
45872783 ACCGACACTT
* * * *
45872793 AGCCTGCAAGACATATAGTCTGAAA-TGTTTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGA
1 AGCCTGCTAGACGTAAAGTCTGAAATTATTTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGA
*
45872857 TATTGTTTCACCGGTATTA
66 TATTGTTTCACCGGCATTA
*
45872876 AGCCTGCTAGACGTAAAGTCTGAAATTATTTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTAA
1 AGCCTGCTAGACGTAAAGTCTGAAATTATTTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGA
45872941 TATTGTTTCACCGGCATTA
66 TATTGTTTCACCGGCATTA
* *
45872960 AGCCTGCTAGACGTAAAGTCTGAAATTATTTCACTGGCATTAAGCCTGCTAGATGTAAAGTCTGA
1 AGCCTGCTAGACGTAAAGTCTGAAATTATTTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGA
* * *
45873025 -AATGTTTCACTGGCAATA
66 TATTGTTTCACCGGCATTA
*
45873043 AACCTG
1 AGCCTG
45873049 ATAGGCACTG
Statistics
Matches: 159, Mismatches: 13, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
83 42 0.26
84 117 0.74
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (84 bp):
AGCCTGCTAGACGTAAAGTCTGAAATTATTTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGA
TATTGTTTCACCGGCATTA
Found at i:45873577 original size:2 final size:2
Alignment explanation
Indices: 45873570--45873594 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
45873560 AATCTTAAGT
45873570 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
45873595 TATATACCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:45881079 original size:43 final size:43
Alignment explanation
Indices: 45881019--45881109 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
45881009 CTTTGAGTTC
* * *
45881019 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
* *
45881061 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATTTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
45881104 ATTACC
1 ATTACC
45881110 TTGCAATGTG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.45
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
Found at i:45881524 original size:43 final size:43
Alignment explanation
Indices: 45881459--45881653 Score: 173
Period size: 42 Copynumber: 4.6 Consensus size: 43
45881449 AATTTTTTTC
* * * *
45881459 AAAGGTAATGTT-TTTAGCGGCGTTTTTGCGAGAAGCACTGCT
1 AAAGGTTATGTTCTTTAGCGGCGTTTGTGAGAAAAGCACTGCT
* *
45881501 AAAGGTTATGTTCTTTAGCGGCGTTTGTGATAAAAGCTCTGCT
1 AAAGGTTATGTTCTTTAGCGGCGTTTGTGAGAAAAGCACTGCT
* * *
45881544 AAAGATT-TGTTCTTTAACGGCGTTTGTGATAAAAG-AGC-GCT
1 AAAGGTTATGTTCTTTAGCGGCGTTTGTGAGAAAAGCA-CTGCT
* * * * * * * *
45881585 AAAGGTCAAGATCTTTAGTGGCGTTTGTGATAAAAACGCCGCT
1 AAAGGTTATGTTCTTTAGCGGCGTTTGTGAGAAAAGCACTGCT
* * *
45881628 AAAGGTCATGATCTTTAGTGGCGTTT
1 AAAGGTTATGTTCTTTAGCGGCGTTT
45881654 TTCACATAAA
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
41 8 0.06
42 63 0.48
43 59 0.45
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (43 bp):
AAAGGTTATGTTCTTTAGCGGCGTTTGTGAGAAAAGCACTGCT
Found at i:45881665 original size:43 final size:43
Alignment explanation
Indices: 45881581--45881666 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
45881571 GATAAAAGAG
* *
45881581 CGCTAAAGGTCAAGATCTTTAGTGGCGTTTGTGATAAAAACGC
1 CGCTAAAGGTCAAGATCTTTAGTGGCGTTTGTCACAAAAACGC
* * *
45881624 CGCTAAAGGTCATGATCTTTAGTGGCGTTTTTCACATAAACGC
1 CGCTAAAGGTCAAGATCTTTAGTGGCGTTTGTCACAAAAACGC
45881667 TGTTAAATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (43 bp):
CGCTAAAGGTCAAGATCTTTAGTGGCGTTTGTCACAAAAACGC
Found at i:45887632 original size:85 final size:85
Alignment explanation
Indices: 45887455--45887657 Score: 243
Period size: 85 Copynumber: 2.4 Consensus size: 85
45887445 GTCTCTGTTT
* *
45887455 TTTTTTTTTGCACTCAATTGTGTACTTGAACTTTTAAAATGCATAAAAAAGGCTTTCAAACTTTT
1 TTTTTTTTTGCACTCAATTGTGTATTTGAACTTTTAAAATACATAAAAAAGGCTTTCAAACTTTT
45887520 TCAAAAAAAGCAATAAAGACA
66 T-AAAAAAAGCAATAAAGACA
45887541 -TTTTTTTTGCACTCAATTGTGTATTTGAACTTTTAAAATACATCAAAAAA-G-TTCTCAAACTT
1 TTTTTTTTTGCACTCAATTGTGTATTTGAACTTTTAAAATACAT-AAAAAAGGCTT-TCAAACTT
* * * *
45887603 TTT-AAATAAGCAATTAAGTCC
64 TTTAAAAAAAGCAATAAAGACA
** * *
45887624 TTACTTTTTTTTTACTCAATTGGGTATTTAAACT
1 TT--TTTTTTTGCACTCAATTGTGTATTTGAACT
45887658 GCCATAATGT
Statistics
Matches: 102, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
83 14 0.14
84 3 0.03
85 53 0.52
86 32 0.31
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.41
Consensus pattern (85 bp):
TTTTTTTTTGCACTCAATTGTGTATTTGAACTTTTAAAATACATAAAAAAGGCTTTCAAACTTTT
TAAAAAAAGCAATAAAGACA
Found at i:45887811 original size:9 final size:9
Alignment explanation
Indices: 45887799--45887885 Score: 54
Period size: 9 Copynumber: 9.6 Consensus size: 9
45887789 TAAAAAATCA
45887799 ATAAAAATT
1 ATAAAAATT
45887808 ATAAAAATT
1 ATAAAAATT
**
45887817 ATTAAATTTT
1 A-TAAAAATT
*
45887827 AATAAAAAAT
1 -ATAAAAATT
*
45887837 AT-AAAATC
1 ATAAAAATT
* *
45887845 GTAAAAAAT
1 ATAAAAATT
*
45887854 -TGAAAA-T
1 ATAAAAATT
45887861 ATATAAAATAT
1 ATA-AAAAT-T
45887872 ATAAAAATT
1 ATAAAAATT
45887881 ATAAA
1 ATAAA
45887886 TTTTTATAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 14
0.69 0.14 0.16
Matches are distributed among these distances:
7 1 0.02
8 11 0.19
9 26 0.44
10 16 0.27
11 5 0.08
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:45887886 original size:26 final size:26
Alignment explanation
Indices: 45887830--45887880 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
45887820 AAATTTTAAT
* *
45887830 AAAAAATATAAAATCGTAAAAAATTG
1 AAAATATATAAAATCATAAAAAATTG
45887856 AAAATATATAAAAT-ATATAAAAATT
1 AAAATATATAAAATCATA-AAAAATT
45887881 ATAAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (26 bp):
AAAATATATAAAATCATAAAAAATTG
Found at i:45888163 original size:10 final size:10
Alignment explanation
Indices: 45888142--45888207 Score: 64
Period size: 10 Copynumber: 6.8 Consensus size: 10
45888132 TTTTAATACA
45888142 TTTTATAA-T
1 TTTTATAATT
*
45888151 TTTTATGA-T
1 TTTTATAATT
**
45888160 TTTTATAAAA
1 TTTTATAATT
*
45888170 TTTTACAATT
1 TTTTATAATT
45888180 TTTTATAATT
1 TTTTATAATT
*
45888190 TTTTATACTT
1 TTTTATAATT
*
45888200 TTTAATAA
1 TTTTATAA
45888208 AATTTAAATA
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
9 15 0.33
10 31 0.67
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (10 bp):
TTTTATAATT
Found at i:45888163 original size:18 final size:19
Alignment explanation
Indices: 45888142--45888192 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
45888132 TTTTAATACA
**
45888142 TTTTATAATTTTTATGA-T
1 TTTTATAATTTTTACAATT
*
45888160 TTTTATAAAATTTTACAATT
1 TTTTAT-AATTTTTACAATT
45888180 TTTTATAATTTTT
1 TTTTATAATTTTT
45888193 TATACTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 6 0.22
19 14 0.52
20 7 0.26
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTATAATTTTTACAATT
Found at i:45888171 original size:20 final size:19
Alignment explanation
Indices: 45888148--45888222 Score: 55
Period size: 20 Copynumber: 3.8 Consensus size: 19
45888138 TACATTTTAT
45888148 AATTTTTATGATTTTTATAA
1 AATTTTTAT-ATTTTTATAA
*
45888168 AA-TTTTACAATTTTT-TATA
1 AATTTTTA-TATTTTTATA-A
*
45888187 ATTTTTTATACTTTTTAATAA
1 AATTTTTATA-TTTTT-ATAA
**
45888208 AATTTAAATATTTTT
1 AATTTTTATATTTTT
45888223 TATTTTTTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
18 2 0.05
19 14 0.33
20 17 0.40
21 8 0.19
22 2 0.05
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (19 bp):
AATTTTTATATTTTTATAA
Found at i:45888221 original size:40 final size:38
Alignment explanation
Indices: 45888142--45888232 Score: 109
Period size: 39 Copynumber: 2.4 Consensus size: 38
45888132 TTTTAATACA
*
45888142 TTTTATAATTTTTATGATTTTTATAAAATTTTACAATT
1 TTTTATAATTTTTATGATTTTTATAAAATTTTAAAATT
45888180 TTTTATAATTTTTTAT-ACTTTTTAATAAAA-TTTAAATATT
1 TTTTATAA-TTTTTATGA-TTTTT-ATAAAATTTTAAA-ATT
45888220 TTTTAT--TTTTTAT
1 TTTTATAATTTTTAT
45888233 TAAAATTTAA
Statistics
Matches: 48, Mismatches: 1, Indels: 9
0.83 0.02 0.16
Matches are distributed among these distances:
37 7 0.15
38 9 0.19
39 17 0.35
40 15 0.31
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (38 bp):
TTTTATAATTTTTATGATTTTTATAAAATTTTAAAATT
Found at i:45888244 original size:27 final size:29
Alignment explanation
Indices: 45888187--45888253 Score: 93
Period size: 28 Copynumber: 2.3 Consensus size: 29
45888177 ATTTTTTATA
45888187 ATTTTTTATACTTTTTAATAAAATTTAAAT
1 ATTTTTTATA-TTTTTAATAAAATTTAAAT
*
45888217 ATTTTTTAT-TTTTTATTAAAATTT-AAT
1 ATTTTTTATATTTTTAATAAAATTTAAAT
*
45888244 AGTTTTTATA
1 ATTTTTTATA
45888254 ACTTTTATTC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 11 0.32
28 14 0.41
30 9 0.26
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (29 bp):
ATTTTTTATATTTTTAATAAAATTTAAAT
Found at i:45888260 original size:29 final size:29
Alignment explanation
Indices: 45888181--45888262 Score: 82
Period size: 28 Copynumber: 2.9 Consensus size: 29
45888171 TTTACAATTT
*
45888181 TTTATAAT-TTTTTAT-ACTTTTTAATAAAA
1 TTTA-AATATTTTTATAAC-TTTTATTAAAA
**
45888210 TTTAAATATTTTT-TATTTTTTATTAAAA
1 TTTAAATATTTTTATAACTTTTATTAAAA
45888238 TTT-AATAGTTTTTATAACTTTTATT
1 TTTAAATA-TTTTTATAACTTTTATT
45888263 CATTTTTATT
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
27 4 0.09
28 22 0.50
29 18 0.41
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.62
Consensus pattern (29 bp):
TTTAAATATTTTTATAACTTTTATTAAAA
Found at i:45889419 original size:11 final size:10
Alignment explanation
Indices: 45889393--45889418 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
45889383 GGGGAGAGCC
45889393 TTTTTTGAAG
1 TTTTTTGAAG
45889403 TTTTTTGAAG
1 TTTTTTGAAG
45889413 TTTTTT
1 TTTTTT
45889419 TAAAGGTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.69
Consensus pattern (10 bp):
TTTTTTGAAG
Found at i:45893926 original size:52 final size:52
Alignment explanation
Indices: 45893823--45893927 Score: 133
Period size: 51 Copynumber: 2.0 Consensus size: 52
45893813 CTACAGATTA
* * * * *
45893823 TTAACTCTTCTAAATAGTGTTTTTCTCATGTAAACCTGTTCTGCTCTTATTG
1 TTAACTCTTCTAAATAGTGCTATTCTCAAGTAAACCAGTTCTACTCTTATTG
45893875 TTAACT-TTCTAAATAGTGCTATTCTCAAGTAATACCAGTTCTACTAC-TATTG
1 TTAACTCTTCTAAATAGTGCTATTCTCAAGTAA-ACCAGTTCTACT-CTTATTG
45893927 T
1 T
45893928 CAACCATAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
51 23 0.50
52 22 0.48
53 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.10, T:0.45
Consensus pattern (52 bp):
TTAACTCTTCTAAATAGTGCTATTCTCAAGTAAACCAGTTCTACTCTTATTG
Found at i:45893976 original size:51 final size:52
Alignment explanation
Indices: 45893915--45894013 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 52
45893905 AATACCAGTT
*
45893915 CTACTACTATTGTCAACCATAGT-ACTGATGCTTTTTCTCATGTAACACCAA
1 CTACTACTATTGTCAACCATAGTAACTGATGCCTTTTCTCATGTAACACCAA
* * * * *
45893966 CTACTCCTATTGTTAACCCTAGTAACTGGTTCCTTTTCTCATGTAACA
1 CTACTACTATTGTCAACCATAGTAACTGATGCCTTTTCTCATGTAACA
45894014 GTTGTATCGT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
51 20 0.49
52 21 0.51
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.37
Consensus pattern (52 bp):
CTACTACTATTGTCAACCATAGTAACTGATGCCTTTTCTCATGTAACACCAA
Found at i:45903305 original size:2 final size:2
Alignment explanation
Indices: 45903298--45903325 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
45903288 AACTTGTTAA
45903298 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
45903326 ATCTATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:45905277 original size:3 final size:3
Alignment explanation
Indices: 45905251--45905334 Score: 120
Period size: 3 Copynumber: 28.3 Consensus size: 3
45905241 TTTTTTTAGT
*
45905251 TTA TT- TTA TTA GTA TTGA -TA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
45905295 TTA TTA TTA TTA TTA TTA TTA -TA TTA TATA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA T
45905335 ACCTACATAT
Statistics
Matches: 74, Mismatches: 2, Indels: 10
0.86 0.02 0.12
Matches are distributed among these distances:
2 5 0.07
3 65 0.88
4 4 0.05
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:45913975 original size:13 final size:13
Alignment explanation
Indices: 45913957--45913981 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45913947 ACAAACAATA
45913957 AAATTTTCACACG
1 AAATTTTCACACG
45913970 AAATTTTCACAC
1 AAATTTTCACAC
45913982 ATATTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:45926742 original size:12 final size:12
Alignment explanation
Indices: 45926725--45926750 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
45926715 TTCTTTTACC
45926725 ATATTTATTATT
1 ATATTTATTATT
45926737 ATATTTATTATT
1 ATATTTATTATT
45926749 AT
1 AT
45926751 TACTATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
ATATTTATTATT
Found at i:45926990 original size:12 final size:12
Alignment explanation
Indices: 45926958--45926982 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45926948 GTTATCATTG
45926958 TTATTATTTATT
1 TTATTATTTATT
45926970 TTATTATTTATT
1 TTATTATTTATT
45926982 T
1 T
45926983 ATTTATTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTATTATTTATT
Found at i:45928130 original size:47 final size:48
Alignment explanation
Indices: 45928023--45928130 Score: 168
Period size: 48 Copynumber: 2.3 Consensus size: 48
45928013 TGGAAGAATA
45928023 TGGCAGTTTATCTGCAAAAGTAGTGGCTTGCCAACAAATTTGATTATG
1 TGGCAGTTTATCTGCAAAAGTAGTGGCTTGCCAACAAATTTGATTATG
*
45928071 TGGCAGTATATCTGCAAAAGT-GATGGCTTGTCC-AC-AATTTGATTATG
1 TGGCAGTTTATCTGCAAAAGTAG-TGGCTTG-CCAACAAATTTGATTATG
45928118 TGGCAGTTTATCT
1 TGGCAGTTTATCT
45928131 ACATTACTGT
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
47 25 0.45
48 29 0.52
49 2 0.04
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (48 bp):
TGGCAGTTTATCTGCAAAAGTAGTGGCTTGCCAACAAATTTGATTATG
Found at i:45931363 original size:101 final size:101
Alignment explanation
Indices: 45931235--45931419 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 101
45931225 AAAGTGATGG
* * *
45931235 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAT-G-ATGGGTCGCATATGTAGT
1 TCACGTGTGTAGAACTATGTGCAGGCTACTACGTGTACCAG-ATGGAAT-GGTCACATATGTAGT
45931298 ACTATGTGCAGGCTACTATGCATACCGGATAGCTTCGA
64 ACTATGTGCAGGCTACTATGCATACCGGATAGCTTCGA
* *
45931336 TCACGTGTGTAGAACTATGTGCAGGCTACTACGTGTATCAGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGAACTATGTGCAGGCTACTACGTGTACCAGATGG-AATGGTCACATATGTAGTA
45931401 CTATGTGCAGGCTACTATG
65 CTATGTGCAGGCTACTATG
45931420 TGAACCGAAC
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
100 2 0.03
101 39 0.51
102 33 0.43
103 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGAACTATGTGCAGGCTACTACGTGTACCAGATGGAATGGTCACATATGTAGTAC
TATGTGCAGGCTACTATGCATACCGGATAGCTTCGA
Found at i:45931365 original size:51 final size:50
Alignment explanation
Indices: 45931235--45931417 Score: 156
Period size: 51 Copynumber: 3.6 Consensus size: 50
45931225 AAAGTGATGG
** * *
45931235 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATGGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCATACCGGAATGATCGA
* * * * *
45931285 TCGCATATGTAGTACTATGTGCAGGCTACTATGCATACCGG-ATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCATACCGGAAT-G-ATCGA
* ** * * *
45931336 TCACGTGTGTAGAACTATGTGCAGGCTACTACGTGTATCAG-ATGGTAAT-GG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCATACCGGAAT-G--ATCGA
*
45931387 TCACATGTGTAGTACTATGTGCAGGCTACTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTA
45931418 TGTGAACCGA
Statistics
Matches: 106, Mismatches: 24, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
49 2 0.02
50 36 0.34
51 67 0.63
52 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGCATACCGGAATGATCGA
Found at i:45931593 original size:38 final size:37
Alignment explanation
Indices: 45931547--45931619 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 37
45931537 AGGTGTGGAA
*
45931547 TTGAATTGAA-TATCGACTTAGAAA-TGGAAAAGTGAATT
1 TTGAATTGAATTAT-GA-TT-GAAAGTGAAAAAGTGAATT
45931585 TTGAATTGAATTATGATTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATTATGATTGAAAGTGAAAAAGTGAA
45931620 ATTATGAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 12 0.38
39 3 0.09
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATTATGATTGAAAGTGAAAAAGTGAATT
Found at i:45944636 original size:13 final size:14
Alignment explanation
Indices: 45944618--45944655 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
45944608 CAAGTTGTTG
45944618 ATTTTACT-TAGTA
1 ATTTTACTGTAGTA
*
45944631 ATTTTATTGTAGTA
1 ATTTTACTGTAGTA
*
45944645 ATTTTATTGTA
1 ATTTTACTGTA
45944656 TTTGCGTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 7 0.30
14 16 0.70
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.58
Consensus pattern (14 bp):
ATTTTACTGTAGTA
Found at i:45944645 original size:14 final size:14
Alignment explanation
Indices: 45944626--45944655 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
45944616 TGATTTTACT
45944626 TAGTAATTTTATTG
1 TAGTAATTTTATTG
45944640 TAGTAATTTTATTG
1 TAGTAATTTTATTG
45944654 TA
1 TA
45944656 TTTGCGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (14 bp):
TAGTAATTTTATTG
Found at i:45945269 original size:16 final size:18
Alignment explanation
Indices: 45945232--45945271 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
45945222 ATAAAGATGC
45945232 TTTATTTAAGTAAATTATA
1 TTTATTTAAGTAAA-TATA
45945251 TTTATTTAA-TAAA-ATA
1 TTTATTTAAGTAAATATA
45945267 TTTAT
1 TTTAT
45945272 AATTTAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.38
18 4 0.19
19 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTATTTAAGTAAATATA
Found at i:45945866 original size:17 final size:18
Alignment explanation
Indices: 45945844--45945877 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
45945834 CTTGTAATTC
45945844 ACAAAAA-AAAAAAAAAA
1 ACAAAAACAAAAAAAAAA
45945861 ACAAAAACAAAAAAAAA
1 ACAAAAACAAAAAAAAA
45945878 TTCATAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (18 bp):
ACAAAAACAAAAAAAAAA
Found at i:45945872 original size:15 final size:15
Alignment explanation
Indices: 45945848--45945877 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
45945838 TAATTCACAA
45945848 AAAAAAAAAAAAAAC
1 AAAAAAAAAAAAAAC
45945863 AAAAACAAAAAAAAA
1 AAAAA-AAAAAAAAA
45945878 TTCATAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAC
Found at i:45949905 original size:14 final size:14
Alignment explanation
Indices: 45949886--45949915 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
45949876 TCTCCTATGA
45949886 AAACTCAATAATTC
1 AAACTCAATAATTC
45949900 AAACTCAATAATTC
1 AAACTCAATAATTC
45949914 AA
1 AA
45949916 GAAATTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (14 bp):
AAACTCAATAATTC
Found at i:45950228 original size:14 final size:15
Alignment explanation
Indices: 45950209--45950242 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
45950199 GACACGGACG
*
45950209 AATTTCTGTTAAAA-
1 AATTTCTCTTAAAAC
45950223 AATTTCTCTTAAAAC
1 AATTTCTCTTAAAAC
45950238 AATTT
1 AATTT
45950243 TATATTAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.41, C:0.12, G:0.03, T:0.44
Consensus pattern (15 bp):
AATTTCTCTTAAAAC
Found at i:45952425 original size:21 final size:22
Alignment explanation
Indices: 45952401--45952445 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
45952391 AGAAAAAGAG
45952401 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
45952422 AAATCAAGAAAGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
45952444 AA
1 AA
45952446 CAATTTGTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:45956885 original size:21 final size:21
Alignment explanation
Indices: 45956854--45956902 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
45956844 AAATTAATTA
45956854 AAATT-ATATGATATTTTTGG
1 AAATTAATATGATATTTTTGG
45956874 AAATTAATATGATATTTTTGG
1 AAATTAATATGATATTTTTGG
45956895 AAATTAAT
1 AAATTAAT
45956903 TTTTAAGTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 5 0.18
21 23 0.82
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (21 bp):
AAATTAATATGATATTTTTGG
Found at i:45969738 original size:28 final size:26
Alignment explanation
Indices: 45969694--45969745 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
45969684 ATATTATTAA
45969694 TATAATATATAAATGTTATAATAAGG
1 TATAATATATAAATGTTATAATAAGG
*
45969720 TATAATATATTATTATGTTATAATAA
1 TATAATATA-TA-AATGTTATAATAA
45969746 ACATTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 9 0.39
27 2 0.09
28 12 0.52
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (26 bp):
TATAATATATAAATGTTATAATAAGG
Found at i:45970695 original size:25 final size:25
Alignment explanation
Indices: 45970667--45970728 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
45970657 TTATCCTAGT
45970667 AGGCTTTATGCCAGTGAATTATAAC
1 AGGCTTTATGCCAGTGAATTATAAC
* *
45970692 AGGCTTTATGCCGGTGAATTATATC
1 AGGCTTTATGCCAGTGAATTATAAC
45970717 AGGCTTTATGCC
1 AGGCTTTATGCC
45970729 TAGCAGACTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (25 bp):
AGGCTTTATGCCAGTGAATTATAAC
Found at i:45971095 original size:2 final size:2
Alignment explanation
Indices: 45971088--45971120 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
45971078 GATTATATGT
45971088 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45971121 TTGCTAAGGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45971169 original size:15 final size:16
Alignment explanation
Indices: 45971149--45971180 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
45971139 CTAAGTTAGC
45971149 TTATTTGT-ATTGTTT
1 TTATTTGTCATTGTTT
45971164 TTATTTGTCATTGTTT
1 TTATTTGTCATTGTTT
45971180 T
1 T
45971181 ATAGATTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.12, C:0.03, G:0.12, T:0.72
Consensus pattern (16 bp):
TTATTTGTCATTGTTT
Found at i:45974556 original size:18 final size:18
Alignment explanation
Indices: 45974533--45974569 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
45974523 TTAAAATATT
45974533 TTTTTACAATTTTTATAA
1 TTTTTACAATTTTTATAA
*
45974551 TTTTTACAATTTTTGTAA
1 TTTTTACAATTTTTATAA
45974569 T
1 T
45974570 AAGATTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTTTACAATTTTTATAA
Found at i:45974563 original size:8 final size:9
Alignment explanation
Indices: 45974533--45974564 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
45974523 TTAAAATATT
45974533 TTTTTACAA
1 TTTTTACAA
*
45974542 TTTTTATAA
1 TTTTTACAA
45974551 TTTTTACAA
1 TTTTTACAA
45974560 TTTTT
1 TTTTT
45974565 GTAATAAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (9 bp):
TTTTTACAA
Found at i:45974660 original size:18 final size:19
Alignment explanation
Indices: 45974621--45974669 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
45974611 TTTTTAAAAT
45974621 TTTTTATG-ATTTATATT-
1 TTTTTATGAATTTATATTA
*
45974638 TTTTTCTAGAATTTATA-TA
1 TTTTTAT-GAATTTATATTA
45974657 TTTTTATGAATTT
1 TTTTTATGAATTT
45974670 TTTATATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (19 bp):
TTTTTATGAATTTATATTA
Found at i:45980270 original size:40 final size:40
Alignment explanation
Indices: 45980219--45980305 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
45980209 AATTATGGAA
* * *
45980219 TACTGAATATTGTTTTG-AGTACTG-AGTTGAATTGTGAAGT
1 TACTGAATATTGTTATGTA-TACTGCA-TTGAACTGTGAAAT
45980259 TACTGAATATTGTTATGTATACTGCATTGAACTGTGAAAT
1 TACTGAATATTGTTATGTATACTGCATTGAACTGTGAAAT
45980299 TACTGAA
1 TACTGAA
45980306 GTAATGAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
40 40 0.95
41 2 0.05
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (40 bp):
TACTGAATATTGTTATGTATACTGCATTGAACTGTGAAAT
Found at i:45980554 original size:45 final size:45
Alignment explanation
Indices: 45980488--45980659 Score: 208
Period size: 45 Copynumber: 3.9 Consensus size: 45
45980478 TTACTGATTA
* * *
45980488 GGCAC-TTGTGTGCCGACTACTGTTACTATTACTGTTACCAATTT
1 GGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACCAATTC
* *
45980532 GGCACTTTGTGTGTCGAATACTGTTACTGTTACTGTTACCGATTC
1 GGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACCAATTC
*
45980577 GGCACTTTGTGTGTCGAATACTGTTA--ACGTACTGTTA-CAGATTC
1 GGCACTTTGTGTGTCGAATACTGTTACTA-TTACTGTTACCA-ATTC
* * * *
45980621 AGCACTTTGTGTGTTGAATACTGTTACTGTTACTTTTAC
1 GGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTAC
45980660 TGCTACCGTT
Statistics
Matches: 109, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
43 1 0.01
44 41 0.38
45 67 0.61
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.40
Consensus pattern (45 bp):
GGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACCAATTC
Found at i:45980613 original size:89 final size:88
Alignment explanation
Indices: 45980478--45980659 Score: 233
Period size: 89 Copynumber: 2.0 Consensus size: 88
45980468 TTTTGTCGGC
* * * **
45980478 TTACTGATTAGGCACTTGTGTGCCGACTACTGTTACTATTACTGTTACCA-ATTTGGCACTTTGT
1 TTACCGATTAGGCACTTGTGTGCCGAATACTGTTAC-AGTACTGTTA-CAGATTCAGCACTTTGT
45980542 GTGTCGAATACTGTTACTGTTACTG
64 GTGTCGAATACTGTTACTGTTACTG
* *
45980567 TTACCGATTCGGCACTTTGTGTGTCGAATACTGTTA-ACGTACTGTTACAGATTCAGCACTTTGT
1 TTACCGATTAGGCAC-TTGTGTGCCGAATACTGTTACA-GTACTGTTACAGATTCAGCACTTTGT
* *
45980631 GTGTTGAATACTGTTACTGTTACTT
64 GTGTCGAATACTGTTACTGTTACTG
45980656 TTAC
1 TTAC
45980660 TGCTACCGTT
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
88 3 0.04
89 60 0.74
90 18 0.22
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.41
Consensus pattern (88 bp):
TTACCGATTAGGCACTTGTGTGCCGAATACTGTTACAGTACTGTTACAGATTCAGCACTTTGTGT
GTCGAATACTGTTACTGTTACTG
Found at i:45980650 original size:6 final size:6
Alignment explanation
Indices: 45980639--45980682 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
45980629 GTGTGTTGAA
* * *
45980639 TACTGT TACTGT TACTTT TACTGC TACCGT TACTGAT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTGT T
45980683 TAGGTACTGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:45989985 original size:18 final size:18
Alignment explanation
Indices: 45989951--45989985 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
45989941 ATATATGTTA
**
45989951 AAATAATAAAAGTAAAAC
1 AAATAATAAAACAAAAAC
45989969 AAATAATAAAACAAAAA
1 AAATAATAAAACAAAAA
45989986 GACAACCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.77, C:0.06, G:0.03, T:0.14
Consensus pattern (18 bp):
AAATAATAAAACAAAAAC
Found at i:45991371 original size:18 final size:18
Alignment explanation
Indices: 45991338--45991390 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
45991328 ATTCACCTAA
*
45991338 ACCCAATCCAAACCCAAGT
1 ACCCAA-CCCAACCCAAGT
** *
45991357 ATTCAACCCAACCCAATT
1 ACCCAACCCAACCCAAGT
45991375 ACCCAACCCAACCCAA
1 ACCCAACCCAACCCAA
45991391 TCATAAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.42, C:0.45, G:0.02, T:0.11
Consensus pattern (18 bp):
ACCCAACCCAACCCAAGT
Found at i:45991540 original size:9 final size:9
Alignment explanation
Indices: 45991482--45991539 Score: 80
Period size: 9 Copynumber: 6.4 Consensus size: 9
45991472 GTAGTGATTC
45991482 AATTCGGTT
1 AATTCGGTT
45991491 AATTCGGTT
1 AATTCGGTT
*
45991500 AATTCGGGT
1 AATTCGGTT
*
45991509 AATCCGGTT
1 AATTCGGTT
*
45991518 AATTCAGTT
1 AATTCGGTT
*
45991527 AATTTGGTT
1 AATTCGGTT
45991536 AATT
1 AATT
45991540 TTTAACCAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:45993415 original size:20 final size:20
Alignment explanation
Indices: 45993316--45993417 Score: 82
Period size: 20 Copynumber: 5.1 Consensus size: 20
45993306 GCATCATAGA
* *
45993316 TGTGTAATAGAGACACCAAAG
1 TGTG-AATAGAGGCACCGAAG
*
45993337 TGCAGAA-AGAGGCACCGAAG
1 TG-TGAATAGAGGCACCGAAG
** * * *
45993357 TGCAAACAGAGACACCAAAG
1 TGTGAATAGAGGCACCGAAG
**
45993377 TGT-AATAGAGGCATTGAAG
1 TGTGAATAGAGGCACCGAAG
45993396 TGTGAATAGAGGCACCGAAG
1 TGTGAATAGAGGCACCGAAG
45993416 TG
1 TG
45993418 CAAACCCGTA
Statistics
Matches: 63, Mismatches: 15, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
19 16 0.25
20 42 0.67
21 4 0.06
22 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.29, T:0.15
Consensus pattern (20 bp):
TGTGAATAGAGGCACCGAAG
Found at i:45998793 original size:46 final size:45
Alignment explanation
Indices: 45998692--45999150 Score: 518
Period size: 46 Copynumber: 10.6 Consensus size: 45
45998682 TACATATGAT
* * *
45998692 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGAGTAGCTAAGCTAC
*
45998735 CATTTATCACTTTGTCACTTGATCAGATAAGAGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGAGTAGCTAA-GCTAC
*
45998781 CACTTATCACTTTCTCACTTGATCAGATAAGAGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGAGTAGCTAA-GCTAC
* *
45998827 CACTTATCACTTTCTCACTTGATCAGATAAGA-TAAG-T-A--TAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGAGT-AGCTAAGCTAC
* *
45998868 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGAGTAGCT-AAGCTAC
*
45998914 CACTTATCACTTTGTCTCTTGATCAGAT-A-AGT-G-T-AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGAGTAGCTAAGCTAC
* *
45998950 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGAGTAGCT-AAGCTAC
*
45998996 CACTTATCACTTTGTCTCTTGATCAGAT-A-AGT-G-T-AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGAGTAGCTAAGCTAC
* *
45999032 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGAGTAGCTAA-GCTAC
* *
45999078 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGAGTAGCTAA-GCTAC
*
45999124 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
45999151 AGTACTCAAA
Statistics
Matches: 362, Mismatches: 24, Indels: 57
0.82 0.05 0.13
Matches are distributed among these distances:
36 52 0.14
37 2 0.01
38 4 0.01
39 2 0.01
40 6 0.02
41 35 0.10
42 7 0.02
43 11 0.03
44 11 0.03
45 24 0.07
46 208 0.57
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (45 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGAGTAGCTAAGCTAC
Found at i:45998897 original size:36 final size:36
Alignment explanation
Indices: 45998827--45999068 Score: 187
Period size: 36 Copynumber: 6.0 Consensus size: 36
45998817 CTAAGGCTAC
*
45998827 CACTTATCACTTTCTCACTTGATCAGATAAGATAAGTATAG
1 CACTTATCACTTTTTCACTTGATC-----AGATAAGTATAG
45998868 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAG
1 CACTTATCACTTTTTCACTTGATCAGATAA--GTA--T--AG
* * *
45998910 CTACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
1 ----CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
45998950 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAG
1 CACTTATCACTTTTTCACTTGATCAGATAA--GTA--T--AG
* * *
45998992 CTACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
1 ----CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
*
45999032 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
45999068 C
1 C
45999069 TAATGCTACC
Statistics
Matches: 169, Mismatches: 12, Indels: 45
0.75 0.05 0.20
Matches are distributed among these distances:
36 69 0.41
38 5 0.03
40 6 0.04
41 23 0.14
42 6 0.04
44 4 0.02
46 56 0.33
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (36 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
Found at i:45998985 original size:82 final size:82
Alignment explanation
Indices: 45998781--45999114 Score: 551
Period size: 82 Copynumber: 4.0 Consensus size: 82
45998771 CTAAGGCTAC
* * *
45998781 CACTTATCACTTTCTCACTTGATCAGATAAGAGTAGCTAAGGCTACCACTTATCACTTTCTCACT
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTCTCACT
45998846 TGATCAGATAAGATAAGTATAG
66 TGATCAGATAAG-T--G--TAG
* *
45998868 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTCTCACT
45998933 TGATCAGATAAGTGTAG
66 TGATCAGATAAGTGTAG
* *
45998950 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTCTCACT
45999015 TGATCAGATAAGTGTAG
66 TGATCAGATAAGTGTAG
*
45999032 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTCTCACT
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTCTCACT
45999097 TGATCAGATAAGTGTAG
66 TGATCAGATAAGTGTAG
45999114 C
1 C
45999115 TAATGCTACC
Statistics
Matches: 239, Mismatches: 8, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
82 165 0.69
84 1 0.00
86 1 0.00
87 72 0.30
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (82 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTCTCACT
TGATCAGATAAGTGTAG
Found at i:45999082 original size:128 final size:128
Alignment explanation
Indices: 45998781--45999150 Score: 422
Period size: 128 Copynumber: 2.9 Consensus size: 128
45998771 CTAAGGCTAC
* * *
45998781 CACTTATCACTTTCTCACTTGATCAGATAAGAGTAGCTAAGGCTACCACTTATCACTTTCTCACT
1 CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTCTCACT
* * *
45998846 TGATCAGATAA--G-A--T-AAGTATAGCACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
66 TGATCAGATAAGTGTAGCTAAAG-CTACCACTTATCACTTTATCACTTGATCAGATAAGTGTAG
* *** * * * *
45998904 CTAAAGC-TACCAC-TTATCACTTTG-TCTCTTGA-T-CAGATAAGTG-TAGCACTTATCACTTT
1 C---A-CTTATCACTTTATCAC-TTGATCAGATAAGTGTAGCTAA-TGCTACCACTTATCACTTT
* * *
45998963 TTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCTTGATCAGATAAGT
60 CTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTTGATCAGATAAGT
45999028 GTAG
125 GTAG
*
45999032 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTCTCACT
1 CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTCTCACT
*
45999097 TGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTATCACTTGATCAGA
66 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTTGATCAGA
45999151 AGTACTCAAA
Statistics
Matches: 200, Mismatches: 29, Indels: 31
0.77 0.11 0.12
Matches are distributed among these distances:
123 37 0.19
124 2 0.01
125 20 0.10
126 20 0.10
127 4 0.02
128 114 0.57
129 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (128 bp):
CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTCTCACT
TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTTGATCAGATAAGTGTAG
Found at i:46001552 original size:5 final size:5
Alignment explanation
Indices: 46001542--46001578 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
46001532 TCTATAATAG
46001542 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA
46001579 TTACATTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:46003238 original size:22 final size:21
Alignment explanation
Indices: 46003203--46003279 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 21
46003193 AAGGGGTATC
* *
46003203 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
46003224 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
46003247 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
46003266 TGCATATCATATCT
1 TACAAATCATATCT
46003280 AAGATTGCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
19 19 0.40
21 4 0.08
22 15 0.31
23 10 0.21
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:46003246 original size:23 final size:22
Alignment explanation
Indices: 46003203--46003260 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
46003193 AAGGGGTATC
* *
46003203 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
46003224 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
46003247 TGCATATCATATCT
1 TACAAATCATATCT
46003261 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:46003263 original size:19 final size:19
Alignment explanation
Indices: 46003239--46003292 Score: 108
Period size: 19 Copynumber: 2.8 Consensus size: 19
46003229 AATCATATCT
46003239 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
46003258 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
46003277 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
46003293 CTTAAAGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:46005361 original size:24 final size:24
Alignment explanation
Indices: 46005310--46005377 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
46005300 ATTGTAAAGT
* * **
46005310 ATCTTAGAATGACGAAATAATAGG
1 ATCTTAGAATTACCAAATAATAAA
46005334 ATCTTAGAATTACCAAATAATAAA
1 ATCTTAGAATTACCAAATAATAAA
46005358 ATCTT-GTAAATTACCAAATA
1 ATCTTAG--AATTACCAAATA
46005378 TTTTCCTTCT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
23 1 0.03
24 25 0.66
25 12 0.32
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.29
Consensus pattern (24 bp):
ATCTTAGAATTACCAAATAATAAA
Found at i:46005511 original size:15 final size:15
Alignment explanation
Indices: 46005487--46005516 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
46005477 TAAAATTAGT
*
46005487 TAAATTAATAATAAA
1 TAAATAAATAATAAA
46005502 TAAATAAATAATAAA
1 TAAATAAATAATAAA
46005517 AAAGGATAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAATAAATAATAAA
Found at i:46005858 original size:31 final size:32
Alignment explanation
Indices: 46005820--46005882 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
46005810 AGGCAAATTA
46005820 CAAGAGTAATTGAATCCTAAT-AAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
46005851 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
46005883 AAAATTATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 21 0.68
32 10 0.32
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.32
Consensus pattern (32 bp):
CAAGAGTAATTGAATCCTAATAAAAACTCTTT
Found at i:46011605 original size:21 final size:21
Alignment explanation
Indices: 46011579--46011665 Score: 71
Period size: 21 Copynumber: 4.3 Consensus size: 21
46011569 AGGTAGGCAA
46011579 CTTTTTTTTTGCGCTTTTTTG
1 CTTTTTTTTTGCGCTTTTTTG
*
46011600 CTTTTTGCTTT----TTTTTT-
1 CTTTTT-TTTTGCGCTTTTTTG
*
46011617 CTTTTTTTTTTGCGC-TTTTTA
1 C-TTTTTTTTTGCGCTTTTTTG
*
46011638 CTCATTTTTTTGCGCTTTTTTG
1 CT-TTTTTTTTGCGCTTTTTTG
46011660 -TTTTTT
1 CTTTTTT
46011666 GTTTTAAANN
Statistics
Matches: 52, Mismatches: 5, Indels: 19
0.68 0.07 0.25
Matches are distributed among these distances:
17 4 0.08
18 11 0.21
20 10 0.19
21 19 0.37
22 8 0.15
ACGTcount: A:0.02, C:0.14, G:0.10, T:0.74
Consensus pattern (21 bp):
CTTTTTTTTTGCGCTTTTTTG
Found at i:46011606 original size:17 final size:17
Alignment explanation
Indices: 46011584--46011622 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
46011574 GGCAACTTTT
46011584 TTTTTGCGCTTTTTTGC
1 TTTTTGCGCTTTTTTGC
** *
46011601 TTTTTGCTTTTTTTTTC
1 TTTTTGCGCTTTTTTGC
46011618 TTTTT
1 TTTTT
46011623 TTTTTGCGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.00, C:0.13, G:0.10, T:0.77
Consensus pattern (17 bp):
TTTTTGCGCTTTTTTGC
Found at i:46012285 original size:31 final size:32
Alignment explanation
Indices: 46012247--46012309 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
46012237 AGGCAAATTA
46012247 CAAGAGTAATTGAATCCTAAT-AAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
46012278 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
46012310 AAAATTATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 21 0.68
32 10 0.32
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.32
Consensus pattern (32 bp):
CAAGAGTAATTGAATCCTAATAAAAACTCTTT
Found at i:46012692 original size:18 final size:20
Alignment explanation
Indices: 46012669--46012706 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
46012659 AAGAGTCTAT
46012669 AAAT-CCTTC-CGCACTCTC
1 AAATCCCTTCACGCACTCTC
*
46012687 AAATCCCTTCACTCACTCTC
1 AAATCCCTTCACGCACTCTC
46012707 CCCCTATCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.24, C:0.45, G:0.03, T:0.29
Consensus pattern (20 bp):
AAATCCCTTCACGCACTCTC
Found at i:46021252 original size:32 final size:32
Alignment explanation
Indices: 46021209--46021284 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 32
46021199 CAAAATAAAT
* *
46021209 TATGAAAAGTTACGAATGTGAAGAGACTTGAA
1 TATGAAAAGTTAAGAATGCGAAGAGACTTGAA
* *
46021241 TATGAAGAGTTAATAATGCGAAGAGACTTGAA
1 TATGAAAAGTTAAGAATGCGAAGAGACTTGAA
* *
46021273 GACGAAAAGTTA
1 TATGAAAAGTTA
46021285 CACACATGCA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.45, C:0.07, G:0.25, T:0.24
Consensus pattern (32 bp):
TATGAAAAGTTAAGAATGCGAAGAGACTTGAA
Found at i:46025726 original size:32 final size:32
Alignment explanation
Indices: 46025684--46025759 Score: 107
Period size: 32 Copynumber: 2.4 Consensus size: 32
46025674 AAAATAAATT
*
46025684 ATGAAAAGTTACGAATGTGAAGAGACTTGAAC
1 ATGAAAAGTTACGAATGCGAAGAGACTTGAAC
* ** *
46025716 ATGAATAGTTAATAATGCGAAGAGACTTGAAG
1 ATGAAAAGTTACGAATGCGAAGAGACTTGAAC
46025748 ATGAAAAGTTAC
1 ATGAAAAGTTAC
46025760 ACACATGCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.45, C:0.08, G:0.24, T:0.24
Consensus pattern (32 bp):
ATGAAAAGTTACGAATGCGAAGAGACTTGAAC
Found at i:46026769 original size:19 final size:19
Alignment explanation
Indices: 46026736--46026783 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
46026726 TAAACAATTC
46026736 AATAATATAAA--TAATAT
1 AATAATATAAATTTAATAT
*
46026753 AA-AATATGAAATTTAATTT
1 AATAATAT-AAATTTAATAT
46026772 AATAATATAAAT
1 AATAATATAAAT
46026784 AGTAGATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 5 0.19
17 5 0.19
19 11 0.42
20 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AATAATATAAATTTAATAT
Found at i:46026899 original size:20 final size:19
Alignment explanation
Indices: 46026870--46026922 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 19
46026860 AAATGGTAAG
46026870 AAATAAAAGTTTAGGGGGA
1 AAATAAAAGTTTAGGGGGA
*
46026889 AAATAAAAAGTTT-TGGGG-
1 AAAT-AAAAGTTTAGGGGGA
46026907 -AATAAAAGTTTGAGGG
1 AAATAAAAGTTT-AGGG
46026923 AAAGTAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
16 8 0.28
17 3 0.10
18 2 0.07
19 8 0.28
20 8 0.28
ACGTcount: A:0.45, C:0.00, G:0.30, T:0.25
Consensus pattern (19 bp):
AAATAAAAGTTTAGGGGGA
Found at i:46027954 original size:22 final size:22
Alignment explanation
Indices: 46027928--46027969 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
46027918 ATTGCACCAT
46027928 CAATAATGAAACAAAATTATAC
1 CAATAATGAAACAAAATTATAC
* * *
46027950 CAATATTTAAAGAAAATTAT
1 CAATAATGAAACAAAATTAT
46027970 TCTATAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.29
Consensus pattern (22 bp):
CAATAATGAAACAAAATTATAC
Found at i:46033656 original size:37 final size:39
Alignment explanation
Indices: 46033610--46033708 Score: 121
Period size: 37 Copynumber: 2.5 Consensus size: 39
46033600 TTTAATCAAT
46033610 TTAATATTAAATTAATATAATACTTA-T-CAAGATAAATA
1 TTAA-ATTAAATTAATATAATACTTACTACAAGATAAATA
* * *
46033648 TTAGATTAAATTAATAGAATATTTATCTACAAGATAAATA
1 TTAAATTAAATTAATATAATACTTA-CTACAAGATAAATA
*
46033688 TTAAATTAAAATTAAAATAAT
1 TTAAATT-AAATTAATATAAT
46033709 CGCATTAATA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
37 19 0.37
38 3 0.06
39 1 0.02
40 17 0.33
41 11 0.22
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (39 bp):
TTAAATTAAATTAATATAATACTTACTACAAGATAAATA
Found at i:46034397 original size:22 final size:22
Alignment explanation
Indices: 46034369--46034413 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
46034359 TGACAATGTC
46034369 TGGCTTGGTCCCACCATTCGAT
1 TGGCTTGGTCCCACCATTCGAT
46034391 TGGCTTGGTCCCACCATTCGAT
1 TGGCTTGGTCCCACCATTCGAT
46034413 T
1 T
46034414 TTCGAGACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.31, G:0.22, T:0.33
Consensus pattern (22 bp):
TGGCTTGGTCCCACCATTCGAT
Found at i:46035406 original size:26 final size:25
Alignment explanation
Indices: 46035370--46035433 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 25
46035360 AAATTCCCCG
* * *
46035370 TGTTTACTGTCCCGATGGACTACCC
1 TGTTTATTGTCCCAATGAACTACCC
46035395 ATGTTTATTGTCCCAATGAACTACCC
1 -TGTTTATTGTCCCAATGAACTACCC
*
46035421 CGTCTTATTGTCC
1 TGT-TTATTGTCC
46035434 AAGCAGACTC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 2 0.06
26 31 0.94
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.36
Consensus pattern (25 bp):
TGTTTATTGTCCCAATGAACTACCC
Found at i:46038086 original size:19 final size:19
Alignment explanation
Indices: 46038042--46038088 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
46038032 CTAAACCGAG
46038042 ACTAATTTTTATTCTTCAT
1 ACTAATTTTTATTCTTCAT
* *
46038061 ATTTAATTTTATATT-TTTAT
1 A-CTAATTTT-TATTCTTCAT
46038081 ACTAATTT
1 ACTAATTT
46038089 CATTTTAAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 7 0.30
20 12 0.52
21 4 0.17
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.62
Consensus pattern (19 bp):
ACTAATTTTTATTCTTCAT
Found at i:46050133 original size:8 final size:8
Alignment explanation
Indices: 46050120--46050145 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
46050110 CACAAAGGTT
46050120 CATATATA
1 CATATATA
46050128 CATATATA
1 CATATATA
46050136 CATATATA
1 CATATATA
46050144 CA
1 CA
46050146 CACGTACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (8 bp):
CATATATA
Found at i:46051061 original size:33 final size:33
Alignment explanation
Indices: 46050989--46051066 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 33
46050979 GATATTACAA
*
46050989 ATATTTAAAAAAATGCAAAAATACAAAAATATT
1 ATATTTAAAAAAATGCAAAAAAACAAAAATATT
*
46051022 AAATTTATAAAAAATAG-AAAAAAACTAAAAA-A-T
1 ATATTTA-AAAAAAT-GCAAAAAAAC-AAAAATATT
46051055 ATATTTAAAAAA
1 ATATTTAAAAAA
46051067 TTACTAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
32 5 0.13
33 13 0.33
34 15 0.38
35 6 0.15
ACGTcount: A:0.68, C:0.04, G:0.03, T:0.26
Consensus pattern (33 bp):
ATATTTAAAAAAATGCAAAAAAACAAAAATATT
Found at i:46054458 original size:32 final size:30
Alignment explanation
Indices: 46054385--46054450 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
46054375 ATTATGGAGC
46054385 ACACGGCTGTGTGACACACACGGCCTGAGT
1 ACACGGCTGTGTGACACACACGGCCTGAGT
* *
46054415 ATACAGCTGTGTGACACACACGGCCTGAGT
1 ACACGGCTGTGTGACACACACGGCCTGAGT
46054445 ACACGG
1 ACACGG
46054451 TCATGTGTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.29, G:0.29, T:0.17
Consensus pattern (30 bp):
ACACGGCTGTGTGACACACACGGCCTGAGT
Found at i:46058338 original size:18 final size:17
Alignment explanation
Indices: 46058310--46058343 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
46058300 AGTAAAATAC
*
46058310 TAAAAATTAATGTATTT
1 TAAAAATTAATATATTT
46058327 TAAAATATTAATATATT
1 TAAAA-ATTAATATATT
46058344 AATATAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
TAAAAATTAATATATTT
Found at i:46058593 original size:25 final size:26
Alignment explanation
Indices: 46058565--46058616 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
46058555 TTAAGATTTC
* *
46058565 TAATAGTT-TCATTTTTTATATTTTT
1 TAATAATTATCATTTTTTACATTTTT
*
46058590 TAATAATTATTATTTTTTACATTTTT
1 TAATAATTATCATTTTTTACATTTTT
46058616 T
1 T
46058617 TAAAAGTGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (26 bp):
TAATAATTATCATTTTTTACATTTTT
Found at i:46058668 original size:26 final size:26
Alignment explanation
Indices: 46058577--46058670 Score: 68
Period size: 27 Copynumber: 3.5 Consensus size: 26
46058567 ATAGTTTCAT
* * *
46058577 TTTTTATATTTTTTAATAATTAT-TA
1 TTTTTATAATTTTTAAAAATTATACA
*
46058602 TTTTT-TACATTTTTTTAAAAGTGCTA-ACA
1 TTTTTATA-A--TTTTTAAAAAT--TATACA
*
46058631 TTTTTTTGAATTTTTAAAAATTATACA
1 TTTTTAT-AATTTTTAAAAATTATACA
46058658 TTTTTATAATTTT
1 TTTTTATAATTTT
46058671 ATTTATATTT
Statistics
Matches: 54, Mismatches: 6, Indels: 17
0.70 0.08 0.22
Matches are distributed among these distances:
24 2 0.04
25 5 0.09
26 8 0.15
27 18 0.33
28 10 0.19
29 8 0.15
30 2 0.04
31 1 0.02
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (26 bp):
TTTTTATAATTTTTAAAAATTATACA
Found at i:46059527 original size:21 final size:21
Alignment explanation
Indices: 46059501--46059553 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
46059491 CGCTATTTCT
*
46059501 AATCTCACTGCTACAATACCC
1 AATCTCACTGCTACAATAACC
* * * *
46059522 AATCTCACCGCTATAGTAACT
1 AATCTCACTGCTACAATAACC
46059543 AATCTCACTGC
1 AATCTCACTGC
46059554 CACCGCTGTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.34, G:0.08, T:0.26
Consensus pattern (21 bp):
AATCTCACTGCTACAATAACC
Found at i:46061885 original size:20 final size:19
Alignment explanation
Indices: 46061860--46061897 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
46061850 CATCCTCTTA
46061860 AGAAAGAAAAAAACAGAAAT
1 AGAAAGAAAAAAA-AGAAAT
*
46061880 AGAAAGAAGAAAAAGAAA
1 AGAAAGAAAAAAAAGAAA
46061898 GCCTCCTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (19 bp):
AGAAAGAAAAAAAAGAAAT
Found at i:46068627 original size:15 final size:14
Alignment explanation
Indices: 46068606--46068641 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
46068596 ATAATCCTTA
46068606 ATAATTATCTCAAT
1 ATAATTATCTCAAT
*
46068620 ATTAATTATCTTAAT
1 A-TAATTATCTCAAT
46068635 ATAATTA
1 ATAATTA
46068642 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCTCAAT
Found at i:46070375 original size:29 final size:29
Alignment explanation
Indices: 46070333--46070390 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
46070323 AAAAAAAGTG
46070333 GTAGAGGATCTTTCACATTGAAGTTAGAT
1 GTAGAGGATCTTTCACATTGAAGTTAGAT
46070362 GTAGAGGATCTTTCACATTGAAGTTAGAT
1 GTAGAGGATCTTTCACATTGAAGTTAGAT
46070391 ATGAGTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.34
Consensus pattern (29 bp):
GTAGAGGATCTTTCACATTGAAGTTAGAT
Found at i:46078920 original size:15 final size:15
Alignment explanation
Indices: 46078896--46078950 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
46078886 TTTTAAAAAT
46078896 TTTAAAAATATTTTA
1 TTTAAAAATATTTTA
*
46078911 TTTAACAATATTTTTA
1 TTTAAAAATA-TTTTA
* *
46078927 TCTCAAAAATATATTTT
1 T-TTAAAAATAT-TTTA
46078944 TTTAAAA
1 TTTAAAA
46078951 TCAATGTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
15 9 0.28
16 12 0.38
17 11 0.34
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (15 bp):
TTTAAAAATATTTTA
Found at i:46080781 original size:25 final size:26
Alignment explanation
Indices: 46080745--46080795 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
46080735 TTTTTATGAC
46080745 AGTTTTTATTTATTT-ACTTTTTTTA
1 AGTTTTTATTTATTTGACTTTTTTTA
* *
46080770 AGTTTTTTTTTATTTGTCTTTTTTTA
1 AGTTTTTATTTATTTGACTTTTTTTA
46080796 TTTGTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.75
Consensus pattern (26 bp):
AGTTTTTATTTATTTGACTTTTTTTA
Found at i:46080791 original size:14 final size:13
Alignment explanation
Indices: 46080746--46080815 Score: 61
Period size: 13 Copynumber: 5.3 Consensus size: 13
46080736 TTTTATGACA
46080746 GTTTTTATTTATTT
1 GTTTTT-TTTATTT
** **
46080760 ACTTTTTTTAAGT
1 GTTTTTTTTATTT
46080773 -TTTTTTTTATTT
1 GTTTTTTTTATTT
46080785 GTCTTTTTTTATTT
1 GT-TTTTTTTATTT
* *
46080799 GTTTTATTTGTTT
1 GTTTTTTTTATTT
46080812 GTTT
1 GTTT
46080816 ATTGTTGATT
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
12 9 0.20
13 19 0.42
14 17 0.38
ACGTcount: A:0.11, C:0.03, G:0.09, T:0.77
Consensus pattern (13 bp):
GTTTTTTTTATTT
Found at i:46080791 original size:15 final size:14
Alignment explanation
Indices: 46080774--46080813 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
46080764 TTTTTAAGTT
46080774 TTTTTTTATTTGTC
1 TTTTTTTATTTGTC
46080788 TTTTTTTATTTGT-
1 TTTTTTTATTTGTC
* *
46080801 TTTATTTGTTTGT
1 TTTTTTTATTTGT
46080814 TTATTGTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.07, C:0.03, G:0.10, T:0.80
Consensus pattern (14 bp):
TTTTTTTATTTGTC
Found at i:46080872 original size:18 final size:18
Alignment explanation
Indices: 46080849--46080935 Score: 92
Period size: 19 Copynumber: 4.8 Consensus size: 18
46080839 AAATTTTTTA
46080849 TAATATTATTTTTAAATT
1 TAATATTATTTTTAAATT
**
46080867 TAATA-TATATTTTATTTT
1 TAATATTAT-TTTTAAATT
46080885 TAA-A-TATTTTTAAATT
1 TAATATTATTTTTAAATT
46080901 TAAATATTATTTTTAAATTT
1 T-AATATTATTTTTAAA-TT
46080921 TAA-ATATATTTTTAA
1 TAATAT-TATTTTTAA
46080936 TAATACAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
16 8 0.14
17 9 0.15
18 18 0.31
19 21 0.36
20 3 0.05
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TAATATTATTTTTAAATT
Found at i:46080879 original size:34 final size:32
Alignment explanation
Indices: 46080841--46080914 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 32
46080831 AAAAATTGAA
46080841 ATTTTTTATAATATTATTTTTAAATTT-AATATAT
1 ATTTTTTATAA-A-TATTTTTAAATTTAAATAT-T
*
46080875 ATTTTATTTTTAAATATTTTTAAATTTAAATATT
1 A-TTT-TTTATAAATATTTTTAAATTTAAATATT
46080909 ATTTTT
1 ATTTTT
46080915 AAATTTTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
32 2 0.06
33 3 0.08
34 16 0.44
35 9 0.25
36 6 0.17
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (32 bp):
ATTTTTTATAAATATTTTTAAATTTAAATATT
Found at i:46080895 original size:16 final size:16
Alignment explanation
Indices: 46080855--46080932 Score: 75
Period size: 18 Copynumber: 4.4 Consensus size: 16
46080845 TTTATAATAT
46080855 TATTTTTAAATTTAATA
1 TATTTTTAAATTTAA-A
**
46080872 TATATTTTATTTTTAAA
1 TAT-TTTTAAATTTAAA
46080889 TATTTTTAAATTTAAATA
1 TATTTTTAAATTT-AA-A
46080907 TTATTTTTAAATTTTAAA
1 -TATTTTTAAA-TTTAAA
46080925 TATATTTT
1 TAT-TTTT
46080933 TAATAATACA
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
16 8 0.16
17 12 0.24
18 16 0.31
19 12 0.24
20 3 0.06
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTTTTAAATTTAAA
Found at i:46081013 original size:8 final size:8
Alignment explanation
Indices: 46080990--46081063 Score: 58
Period size: 8 Copynumber: 8.0 Consensus size: 8
46080980 TTATTATTAG
46080990 TTTTATAAT
1 TTTTA-AAT
46080999 ATTTTAAAT
1 -TTTTAAAT
46081008 TTTTAAATTT
1 TTTTAAA--T
46081018 TTTTAAAATTT
1 TTTT-AAA--T
46081029 GTTTTATAATT
1 -TTTTA-AA-T
46081040 TTTTAAAT
1 TTTTAAAT
46081048 TTTTAAAT
1 TTTTAAAT
46081056 TTTTAAAT
1 TTTTAAAT
46081064 ATATTATTTT
Statistics
Matches: 59, Mismatches: 0, Indels: 12
0.83 0.00 0.17
Matches are distributed among these distances:
8 24 0.41
9 5 0.08
10 15 0.25
11 9 0.15
12 6 0.10
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (8 bp):
TTTTAAAT
Found at i:46081039 original size:12 final size:10
Alignment explanation
Indices: 46081007--46081059 Score: 58
Period size: 10 Copynumber: 5.3 Consensus size: 10
46080997 ATATTTTAAA
46081007 TTTTTAAATT
1 TTTTTAAATT
46081017 TTTTTAAAATT
1 TTTTT-AAATT
46081028 TGTTTTATAA-T
1 T-TTTTA-AATT
46081039 TTTTTAAA--
1 TTTTTAAATT
46081047 TTTTTAAATT
1 TTTTTAAATT
46081057 TTT
1 TTT
46081060 AAATATATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
8 8 0.21
9 2 0.05
10 13 0.34
11 9 0.24
12 6 0.16
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTTTAAATT
Found at i:46081094 original size:115 final size:118
Alignment explanation
Indices: 46080956--46081183 Score: 342
Period size: 115 Copynumber: 1.9 Consensus size: 118
46080946 CATTTAAATA
*
46080956 TTTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTT-AA-AT-TTTTAAAT-T
1 TTTTAAAGAGATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATTTTAAATAT
*
46081017 TTTTTAAAATTTGT-TTTATAATTTTT-TAAATTTTTAAATTTTTAAATATATTAT
66 TTTTT-AAATTT-TATTTATAATTTTTATAAATTATT-AATTTTTAAATATATTAT
*
46081071 TTTTAAAGAGATGACCTTTCAAATTTATTATTTGTTTTATAATATTTTAAATGTATATTTTAAAT
1 TTTTAAAGAGATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAA--TATATTTTAAAT
46081136 ATTTTTTAAATTTTATTTATAATTTTTATAAATTATTAATTTTTAAAT
64 ATTTTTTAAATTTTATTTATAATTTTTATAAATTATTAATTTTTAAAT
46081184 TAATTTTAAA
Statistics
Matches: 102, Mismatches: 3, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
115 46 0.45
116 2 0.02
119 3 0.03
120 37 0.36
121 14 0.14
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (118 bp):
TTTTAAAGAGATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATATATTTTAAATAT
TTTTTAAATTTTATTTATAATTTTTATAAATTATTAATTTTTAAATATATTAT
Found at i:46081542 original size:86 final size:85
Alignment explanation
Indices: 46081397--46081581 Score: 334
Period size: 86 Copynumber: 2.2 Consensus size: 85
46081387 GCATATATAG
*
46081397 AATGGTGAAATTGTTGTGTTCAATAGGAGAGTTTAAAAATTCTGTTGAAGATGAATAATGAGGTG
1 AATGGTGAAATTGTTGTGTTCAATAGGAGAGTTAAAAAATTCTGTTGAAGATGAATAATGAGGTG
46081462 TTTTTGGTGTATATTTTTTTT
66 TTTTTGGTGTATA-TTTTTTT
* *
46081483 AATGGCGAAATTGTTGTGTTCAGTAGGAGAGTTAAAAAATTCTGTTGAAGATGAATAATGAGGTG
1 AATGGTGAAATTGTTGTGTTCAATAGGAGAGTTAAAAAATTCTGTTGAAGATGAATAATGAGGTG
46081548 TTTTTGGTGTATATTTTTTT
66 TTTTTGGTGTATATTTTTTT
46081568 AATGGTGAAATTGT
1 AATGGTGAAATTGT
46081582 AGAAGGTGAT
Statistics
Matches: 95, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
85 20 0.21
86 75 0.79
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.42
Consensus pattern (85 bp):
AATGGTGAAATTGTTGTGTTCAATAGGAGAGTTAAAAAATTCTGTTGAAGATGAATAATGAGGTG
TTTTTGGTGTATATTTTTTT
Found at i:46087452 original size:19 final size:19
Alignment explanation
Indices: 46087410--46087452 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
46087400 TAAAGTCCTA
46087410 TTTTTTTAACAAATAAATC
1 TTTTTTTAACAAATAAATC
*
46087429 CTTTTTTAACAAATAAAT-
1 TTTTTTTAACAAATAAATC
46087447 TTTTTT
1 TTTTTT
46087453 CTAATTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTTTTAACAAATAAATC
Found at i:46087513 original size:12 final size:12
Alignment explanation
Indices: 46087475--46087519 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
46087465 ATTTTTGATT
46087475 TTTTAAATAAAA
1 TTTTAAATAAAA
**
46087487 TATTATATTTAAAA
1 T-TT-TAAATAAAA
46087501 TTTTAAATAAAA
1 TTTTAAATAAAA
46087513 TTTTAAA
1 TTTTAAA
46087520 ATTTTTTTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 15 0.56
13 4 0.15
14 8 0.30
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
TTTTAAATAAAA
Found at i:46087707 original size:21 final size:21
Alignment explanation
Indices: 46087672--46087725 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
46087662 TTTTATATTA
*
46087672 TTAAAAAT-ATATTTAAAATT
1 TTAAAAATAATTTTTAAAATT
*
46087692 TTAAAAATAATTTTTAAATTT
1 TTAAAAATAATTTTTAAAATT
46087713 TTAAAAATAATTT
1 TTAAAAATAATTT
46087726 AAAAAAGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 8 0.26
21 23 0.74
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TTAAAAATAATTTTTAAAATT
Found at i:46087750 original size:35 final size:33
Alignment explanation
Indices: 46087688--46087754 Score: 89
Period size: 35 Copynumber: 2.0 Consensus size: 33
46087678 ATATATTTAA
* * *
46087688 AATTTTAAAAATAATTTTTAAATTTTTAAAAAT
1 AATTTAAAAAAGAATTTTTAAAATTTTAAAAAT
46087721 AATTTAAAAAAGAATATATTTAAAATTTTAAAAA
1 AATTTAAAAAAGAAT-T-TTTAAAATTTTAAAAA
46087755 AGTAATATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 13 0.45
34 1 0.03
35 15 0.52
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (33 bp):
AATTTAAAAAAGAATTTTTAAAATTTTAAAAAT
Found at i:46087762 original size:23 final size:25
Alignment explanation
Indices: 46087723--46087769 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
46087713 TTAAAAATAA
46087723 TTTAAAAAAGAATATATT-TAAAAT
1 TTTAAAAAAGAATATATTATAAAAT
*
46087747 TTTAAAAAAGTA-ATATTATAAAA
1 TTTAAAAAAGAATATATTATAAAA
46087770 CATTTCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (25 bp):
TTTAAAAAAGAATATATTATAAAAT
Found at i:46089454 original size:27 final size:27
Alignment explanation
Indices: 46089414--46089468 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
46089404 AATATATTGG
*
46089414 ATTTATACTCTTGACTTTTGTTTGTCA
1 ATTTATACTATTGACTTTTGTTTGTCA
*
46089441 ATTTGTACTATTGACTTTTGTTTGTCA
1 ATTTATACTATTGACTTTTGTTTGTCA
46089468 A
1 A
46089469 CTTCTCTCGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.55
Consensus pattern (27 bp):
ATTTATACTATTGACTTTTGTTTGTCA
Found at i:46095047 original size:18 final size:18
Alignment explanation
Indices: 46095009--46095047 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
46094999 TCCAAAACCA
*
46095009 AAACAGTCCAAAATGTCC
1 AAACAGTCCAAAATGTAC
*
46095027 AAACAGTCCAAAATTTAC
1 AAACAGTCCAAAATGTAC
46095045 AAA
1 AAA
46095048 ACTCTCCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.23, G:0.08, T:0.18
Consensus pattern (18 bp):
AAACAGTCCAAAATGTAC
Found at i:46096618 original size:15 final size:16
Alignment explanation
Indices: 46096590--46096620 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
46096580 TCAACTTTTT
46096590 TGGCCCGAGCCCGGCC
1 TGGCCCGAGCCCGGCC
46096606 TGGCCCG-GCCCGGCC
1 TGGCCCGAGCCCGGCC
46096621 CGAATATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.03, C:0.52, G:0.39, T:0.06
Consensus pattern (16 bp):
TGGCCCGAGCCCGGCC
Found at i:46097414 original size:42 final size:41
Alignment explanation
Indices: 46097315--46097519 Score: 243
Period size: 42 Copynumber: 4.9 Consensus size: 41
46097305 ACTTACAGGG
* * ***
46097315 AAAACGCCGCTAAATCTCATGTTCTTTAGTGGCGCTACCG-A
1 AAAACGCCGCTAAA-ATCATGTTCTTTAGCGGCGCTTGGGAA
46097356 AAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTGGGAA
1 AAAACGCCGCTAAA-ATCATGTTCTTTAGCGGCGCTTGGGAA
* *
46097398 AAAACGCCGCTAAAGATCATGTTCTTTAGCAGCGCTTAGGAA
1 AAAACGCCGCTAAA-ATCATGTTCTTTAGCGGCGCTTGGGAA
* *
46097440 GAAAACGCCGCTAAAAGTAATGTTCTTTAGCGGCGCTTGGTAA
1 -AAAACGCCGCTAAAA-TCATGTTCTTTAGCGGCGCTTGGGAA
*
46097483 AAAGCGCCGCTAAAAGT-AGTGTTCTTTAGCGGCGCTT
1 AAAACGCCGCTAAAA-TCA-TGTTCTTTAGCGGCGCTT
46097520 ATTTCACAAA
Statistics
Matches: 147, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
41 35 0.24
42 76 0.52
43 36 0.24
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (41 bp):
AAAACGCCGCTAAAATCATGTTCTTTAGCGGCGCTTGGGAA
Found at i:46097476 original size:85 final size:83
Alignment explanation
Indices: 46097315--46097520 Score: 258
Period size: 85 Copynumber: 2.4 Consensus size: 83
46097305 ACTTACAGGG
* * *
46097315 AAAACGCCGCTAAATCTCATGTTCTTTAGTGGCGC-TACCGAAAAACGCCGCTAAAGATCATGTT
1 AAAACGCCGCTAAA-ATCATGTTCTTTAGCGGCGCTTACCGAAAAACGCCGCTAAAGATAATGTT
46097379 CTTTAGCGGCGCTTGGGAA
65 CTTTAGCGGCGCTTGGGAA
* *
46097398 AAAACGCCGCTAAAGATCATGTTCTTTAGCAGCGCTTA-GGAAGAAAACGCCGCTAAA-AGTAAT
1 AAAACGCCGCTAAA-ATCATGTTCTTTAGCGGCGCTTACCG-A-AAAACGCCGCTAAAGA-TAAT
*
46097461 GTTCTTTAGCGGCGCTTGGTAA
62 GTTCTTTAGCGGCGCTTGGGAA
*
46097483 AAAGCGCCGCTAAAAGT-AGTGTTCTTTAGCGGCGCTTA
1 AAAACGCCGCTAAAA-TCA-TGTTCTTTAGCGGCGCTTA
46097521 TTTCACAAAC
Statistics
Matches: 108, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
83 32 0.30
84 6 0.06
85 70 0.65
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (83 bp):
AAAACGCCGCTAAAATCATGTTCTTTAGCGGCGCTTACCGAAAAACGCCGCTAAAGATAATGTTC
TTTAGCGGCGCTTGGGAA
Found at i:46097965 original size:21 final size:21
Alignment explanation
Indices: 46097941--46098012 Score: 101
Period size: 21 Copynumber: 3.4 Consensus size: 21
46097931 TTCTTTTGAA
* *
46097941 CCTCTACTTCTCTCGCTGCGG
1 CCTCTGCTTCTCTCGCTGCAG
46097962 CCTCTGCTTCTCTCGCTGCAG
1 CCTCTGCTTCTCTCGCTGCAG
*
46097983 CCTCTGCTTCCCTCGCTGCCA-
1 CCTCTGCTTCTCTCGCTG-CAG
46098004 CCTCTGCTT
1 CCTCTGCTT
46098013 TAAGTTGTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
21 45 0.96
22 2 0.04
ACGTcount: A:0.04, C:0.46, G:0.17, T:0.33
Consensus pattern (21 bp):
CCTCTGCTTCTCTCGCTGCAG
Found at i:46100877 original size:114 final size:113
Alignment explanation
Indices: 46100624--46100880 Score: 279
Period size: 113 Copynumber: 2.3 Consensus size: 113
46100614 TATCCAAATA
* * * * *
46100624 TTTTGCGGCGTTTTTTAATAAGCGCCACTAACTCTAATCTACCTCAAGACCAAACGGTGCGTTTT
1 TTTTACGGCGTTTTTTAATAAACGCCACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTTT
* **** *
46100689 GGTTAAGATCTTTGCGGTGCTTTTTGTAATACGCCGCTAATACTGTTC
66 GGTTAAGATCTTTGCGGCGCTTCAAATAATACGCCACTAATACTGTTC
* ** * * *
46100737 -TTTAGCGGCGTTTTCTCGTAAACGCCACTAATTCTAATATGCCTCAAAACCAAATGCTGCGTTT
1 TTTTA-CGGCGTTTTTTAATAAACGCCACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTT
46100801 TGGTTAAGGTAT-TTTGCGGCGCTTACAAATAA-ACGCCACTAATGA-TGTTC
65 TGGTTAA-G-ATCTTTGCGGCGCTT-CAAATAATACGCCACTAAT-ACTGTTC
*
46100851 TTTTACGGCGTTTTTTAAAAAACGCCACTA
1 TTTTACGGCGTTTTTTAATAAACGCCACTA
46100881 GATGTTCGGG
Statistics
Matches: 117, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
112 3 0.03
113 56 0.48
114 48 0.41
115 10 0.09
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (113 bp):
TTTTACGGCGTTTTTTAATAAACGCCACTAACTCTAATATACCTCAAAACCAAACGCTGCGTTTT
GGTTAAGATCTTTGCGGCGCTTCAAATAATACGCCACTAATACTGTTC
Done.