Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 166 of 198
Found at i:52137287 original size:18 final size:18
Alignment explanation
Indices: 52137264--52137298 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
52137254 CGGGCATGCC
*
52137264 ATACGGGCGTGTGGGCCT
1 ATACGGGCATGTGGGCCT
52137282 ATACGGGCATGTGGGCC
1 ATACGGGCATGTGGGCC
52137299 CAAAATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.23, G:0.43, T:0.20
Consensus pattern (18 bp):
ATACGGGCATGTGGGCCT
Found at i:52138135 original size:13 final size:13
Alignment explanation
Indices: 52138119--52138144 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
52138109 GCGTTACGCA
52138119 AACAAATGGTTTT
1 AACAAATGGTTTT
52138132 AACAAATGGTTTT
1 AACAAATGGTTTT
52138145 TGGAAACACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
AACAAATGGTTTT
Found at i:52139808 original size:4 final size:4
Alignment explanation
Indices: 52139776--52139821 Score: 53
Period size: 4 Copynumber: 12.2 Consensus size: 4
52139766 TAAAACAACC
* *
52139776 AATA AAAA AAT- AAT- AAT- AATA AGTA AATA AATA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
52139821 A
1 A
52139822 GATATTAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
3 9 0.24
4 28 0.76
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:52139830 original size:12 final size:11
Alignment explanation
Indices: 52139803--52139846 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 11
52139793 AATAAGTAAA
*
52139803 TAAATAAATAAA
1 TAAATAAAT-AT
52139815 TAAATAAGATAT
1 TAAATAA-ATAT
52139827 TAAATGAAATAT
1 TAAAT-AAATAT
52139839 TAAATAAA
1 TAAATAAA
52139847 AATCGTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
11 3 0.10
12 22 0.76
13 4 0.14
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (11 bp):
TAAATAAATAT
Found at i:52147252 original size:13 final size:14
Alignment explanation
Indices: 52147232--52147264 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
52147222 GATGGGGTAG
52147232 GATTCTGTATATCT
1 GATTCTGTATATCT
*
52147246 G-TTCTGTTTATCT
1 GATTCTGTATATCT
52147259 GATTCT
1 GATTCT
52147265 ACTATCTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.55
Consensus pattern (14 bp):
GATTCTGTATATCT
Found at i:52148144 original size:17 final size:18
Alignment explanation
Indices: 52148099--52148147 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
52148089 TAAAATAAAA
*
52148099 TAAAAATATA-AAAATTC
1 TAAAAATATATATAATTC
52148116 TAAAAAATATATATAA-TC
1 T-AAAAATATATATAATTC
52148134 TAAAAATATATATA
1 TAAAAATATATATA
52148148 TAAAAAACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 14 0.48
18 12 0.41
19 3 0.10
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAAATATATATAATTC
Found at i:52148146 original size:19 final size:18
Alignment explanation
Indices: 52148100--52148150 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
52148090 AAAATAAAAT
*
52148100 AAAAATATA-AAAATTCTA
1 AAAAATATATATAA-TCTA
52148118 AAAAATATATATAATCTA
1 AAAAATATATATAATCTA
52148136 AAAATATATATATAA
1 AAAA-ATATATATAA
52148151 AAAACATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 17 0.57
19 13 0.43
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAAATATATATAATCTA
Found at i:52150723 original size:41 final size:41
Alignment explanation
Indices: 52150678--52150760 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
52150668 CTCCACCTAT
52150678 AAGTGTTATTGTGACATTTACTGCTGGAAATGTCTAAATCA
1 AAGTGTTATTGTGACATTTACTGCTGGAAATGTCTAAATCA
52150719 AAGTGTTATTGTGACATTTACTGCTGGAAATGTCTAAATCA
1 AAGTGTTATTGTGACATTTACTGCTGGAAATGTCTAAATCA
52150760 A
1 A
52150761 TGTGAATATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (41 bp):
AAGTGTTATTGTGACATTTACTGCTGGAAATGTCTAAATCA
Found at i:52151926 original size:24 final size:21
Alignment explanation
Indices: 52151863--52151917 Score: 87
Period size: 19 Copynumber: 2.7 Consensus size: 21
52151853 ATCTTTAAGG
*
52151863 ATATACAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
52151882 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
52151903 ATATGCAATCTTAGA
1 ATATGCAATCTTAGA
52151918 AGATATGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 18 0.55
21 15 0.45
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:52153495 original size:7 final size:7
Alignment explanation
Indices: 52153483--52153507 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
52153473 AGAGATGGAG
52153483 AGAATAA
1 AGAATAA
52153490 AGAATAA
1 AGAATAA
52153497 AGAATAA
1 AGAATAA
52153504 AGAA
1 AGAA
52153508 AATATGAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (7 bp):
AGAATAA
Found at i:52157782 original size:21 final size:22
Alignment explanation
Indices: 52157745--52157787 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
52157735 CCAATTAACC
52157745 TAGCCCAAACACTAAACCCAAT
1 TAGCCCAAACACTAAACCCAAT
*
52157767 TAGCCTAAAC-CTAAACCCAAT
1 TAGCCCAAACACTAAACCCAAT
52157788 ACTCTGGCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.44, C:0.35, G:0.05, T:0.16
Consensus pattern (22 bp):
TAGCCCAAACACTAAACCCAAT
Found at i:52166243 original size:101 final size:99
Alignment explanation
Indices: 52166065--52166258 Score: 293
Period size: 101 Copynumber: 1.9 Consensus size: 99
52166055 ATAACCCCCT
* * *
52166065 TAAATTTTGTAAAATTACTTTTGAATGCCTTTTAAGTTTTAATTTTTTAATTTTTATATTATAAT
1 TAAATTTTGTAAAATTACTTTTGAAGGCCCTTTAAGTTTTAATTTTTTAATTTTGATATTATAAT
52166130 TAGTGCTTAAAAAAAGGA-AAATTTTGTGTTCTGCCC
66 TAGTGCTT--AAAAAGGATAAA-TTTGTGTTCTGCCC
*
52166166 TAAATTTTGTAAAATTATTTTTGAAGGCCCTTTAAGTTTTAATTTTTTAA-TTTGATATTATAAT
1 TAAATTTTGTAAAATTACTTTTGAAGGCCCTTTAAGTTTTAATTTTTTAATTTTGATATTATAAT
*
52166230 TAGTGTTTGAAAAAGGATAAATTTGTGTT
66 TAGTGCTT-AAAAAGGATAAATTTGTGTT
52166259 TGACCCCCCA
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
99 16 0.19
100 23 0.27
101 47 0.55
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.49
Consensus pattern (99 bp):
TAAATTTTGTAAAATTACTTTTGAAGGCCCTTTAAGTTTTAATTTTTTAATTTTGATATTATAAT
TAGTGCTTAAAAAGGATAAATTTGTGTTCTGCCC
Found at i:52176437 original size:109 final size:109
Alignment explanation
Indices: 52176247--52176647 Score: 560
Period size: 109 Copynumber: 3.7 Consensus size: 109
52176237 ATATTTGACA
* * * *
52176247 ATTTGGTTAAACGAG--AAATCGAA-ACCCAGCACATTAGGGCACG-TTCCT-AGAATGTCCAAA
1 ATTTGGTTGAACGAGAAAAATC-AACACCCAGCACCTTAGGGCACGTTTTCTCA-AATTTCCAAA
* ** *
52176307 CGCAAAACATTGCCTTATTTTGAAATTTTTGGAAGGATATTTAGCT
64 CGCAAAACATTGCCATATTTTGAAATTTTTAAAAGGATATTAAGCT
* * * *
52176353 ATTTGGTTGAACGAGAAAAATCAACACCTAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAATG
1 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTTCTCAAATTTCCAAACG
*
52176418 CAAAACATTGCCATATTTTGAAATTTTTAAAAGGATATTAAGCC
66 CAAAACATTGCCATATTTTGAAATTTTTAAAAGGATATTAAGCT
* *
52176462 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTTCTCAAATTTCCAAACG
52176527 CAAAACATTGCCATATTTTGAAATTTTTAAAAGGATATTAAGCT
66 CAAAACATTGCCATATTTTGAAATTTTTAAAAGGATATTAAGCT
* * * * *
52176571 ATTTGGTTGAACGAGAAAAAACGACACCTAGCACCTTAGGGTACGTTTTCTTAAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTTCTCAAATTTCCAAACG
*
52176636 CAAAATATTGCC
66 CAAAACATTGCC
52176648 TTTATTAATT
Statistics
Matches: 266, Mismatches: 24, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
106 14 0.05
107 2 0.01
108 22 0.08
109 228 0.86
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (109 bp):
ATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCACGTTTTCTCAAATTTCCAAACG
CAAAACATTGCCATATTTTGAAATTTTTAAAAGGATATTAAGCT
Found at i:52177406 original size:39 final size:39
Alignment explanation
Indices: 52177363--52177455 Score: 93
Period size: 41 Copynumber: 2.3 Consensus size: 39
52177353 TATAGATATG
*
52177363 TATAAAAAATATGA-GTATT-TATGTATATATTAAATAAGT
1 TATAAAAAATATGACGT-TTGTATGTATATA-AAAATAAGT
*
52177402 TATAAAATATATAT-ACGTTTGTATGTATGTAAAAATAAGT
1 TATAAAA-A-ATATGACGTTTGTATGTATATAAAAATAAGT
*
52177442 TATTATAAAATATG
1 TA-TAAAAAATATG
52177456 GACATGCATA
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
39 11 0.24
40 15 0.33
41 19 0.42
ACGTcount: A:0.47, C:0.01, G:0.11, T:0.41
Consensus pattern (39 bp):
TATAAAAAATATGACGTTTGTATGTATATAAAAATAAGT
Found at i:52177626 original size:3 final size:3
Alignment explanation
Indices: 52177571--52177613 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
52177561 AAAATAAAAC
* *
52177571 TAA TAA TAA TTAA TAA TAG TAA TAA TAA TAA TAA CAA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
52177614 GGTTAAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:52178735 original size:20 final size:20
Alignment explanation
Indices: 52178662--52178736 Score: 59
Period size: 20 Copynumber: 3.8 Consensus size: 20
52178652 GATATACAAT
52178662 TTATAGAGAAAA-T-AAATTG
1 TTATAGA-AAAATTAAAATTG
**
52178681 TGTATATTAAAATTAAAA-TG
1 T-TATAGAAAAATTAAAATTG
*
52178701 -TATAAAAATATATTAAAATTG
1 TTATAGAAA-A-ATTAAAATTG
52178722 TTATAGAAAAATTAA
1 TTATAGAAAAATTAA
52178737 TAAAACAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
18 6 0.14
19 6 0.14
20 19 0.43
21 6 0.14
22 7 0.16
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (20 bp):
TTATAGAAAAATTAAAATTG
Found at i:52183215 original size:16 final size:17
Alignment explanation
Indices: 52183198--52183237 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 17
52183188 ATATATGCTT
52183198 TTTTTAATATTTTATTTTA
1 TTTTTAATA-TTTA-TTTA
52183217 TTTTTAATATTTA-TTA
1 TTTTTAATATTTATTTA
52183233 TTTTT
1 TTTTT
52183238 CTCCCTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.38
18 4 0.19
19 9 0.43
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTAATATTTATTTA
Found at i:52184413 original size:13 final size:14
Alignment explanation
Indices: 52184395--52184442 Score: 55
Period size: 13 Copynumber: 3.6 Consensus size: 14
52184385 ATTCAAGTAG
*
52184395 GATTCTGTTTATCT
1 GATTCTGTATATCT
52184409 G-TTCTGTATATCT
1 GATTCTGTATATCT
*
52184422 GATTCTG-ATATTT
1 GATTCTGTATATCT
*
52184435 GTTTCTGT
1 GATTCTGT
52184443 GATGGACTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 23 0.79
14 6 0.21
ACGTcount: A:0.15, C:0.12, G:0.17, T:0.56
Consensus pattern (14 bp):
GATTCTGTATATCT
Found at i:52193304 original size:18 final size:16
Alignment explanation
Indices: 52193273--52193307 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
52193263 TTCTATAGGG
52193273 ATTTTACTTTTATTTT
1 ATTTTACTTTTATTTT
52193289 ATTTTACTACTTTATTTT
1 ATTTTACT--TTTATTTT
52193307 A
1 A
52193308 AGGATTCGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.69
Consensus pattern (16 bp):
ATTTTACTTTTATTTT
Found at i:52204087 original size:17 final size:17
Alignment explanation
Indices: 52204065--52204109 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
52204055 TTTTGGACAT
*
52204065 AATTATTTTTAAATAAC
1 AATTATTTTTAAACAAC
52204082 AATTA-TTTTAAACAAC
1 AATTATTTTTAAACAAC
*
52204098 AATTATTCTTAA
1 AATTATTTTTAA
52204110 CAAGAGTCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 15 0.60
17 10 0.40
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTATTTTTAAACAAC
Found at i:52204169 original size:27 final size:27
Alignment explanation
Indices: 52204139--52204193 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
52204129 GGAAATATTC
52204139 TTGATAATACAATTTCTTCAAATATAA
1 TTGATAATACAATTTCTTCAAATATAA
*
52204166 TTGATAATAGAATTTCTTCAAATATAA
1 TTGATAATACAATTTCTTCAAATATAA
52204193 T
1 T
52204194 ATTTTTATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (27 bp):
TTGATAATACAATTTCTTCAAATATAA
Found at i:52206750 original size:29 final size:30
Alignment explanation
Indices: 52206675--52206759 Score: 100
Period size: 31 Copynumber: 2.8 Consensus size: 30
52206665 GATTAAATCA
* *
52206675 AAATTAAAGTTTCAAGTATACATTTGAACC
1 AAATTAAAGTTTCATGTATACAATTGAACC
* * * *
52206705 ACAATTAGAGTTTCATGTCTATAATTGCACC
1 A-AATTAAAGTTTCATGTATACAATTGAACC
52206736 AAATTAAAG-TTCATGTATACAATT
1 AAATTAAAGTTTCATGTATACAATT
52206760 TTACATTAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
29 13 0.29
30 8 0.18
31 24 0.53
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.35
Consensus pattern (30 bp):
AAATTAAAGTTTCATGTATACAATTGAACC
Found at i:52217223 original size:132 final size:132
Alignment explanation
Indices: 52217049--52217695 Score: 1109
Period size: 132 Copynumber: 4.9 Consensus size: 132
52217039 TTGATAGCAA
* *
52217049 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAACCCAGCAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* *
52217114 TCTACTTCCTTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
52217179 GG
131 GG
*
52217181 AGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
52217246 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCGGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
52217311 GG
131 GG
* *
52217313 AGCAGATCGAGGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
52217378 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
52217443 GG
131 GG
* *
52217445 AGCAGATCGAAGATGACGGATTTTACCTCCCTGTGGTTATAGTGGAGTAGATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
52217510 TCTACTTCCCTGGACAACAGAGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
52217575 GG
131 GG
** *
52217577 AATAGATCGAAGATGGCGGA-TTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * * *
52217641 TCTACTTCCCTGGGCAACAGTGGAATAAATTGAAGATCGTAAG-TCTTATCTCCCT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGAT-TTCAGATCTTATCTCCCT
52217696 GCAGTCGCAG
Statistics
Matches: 489, Mismatches: 25, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
131 88 0.18
132 401 0.82
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:52217444 original size:44 final size:45
Alignment explanation
Indices: 52217396--52217590 Score: 111
Period size: 44 Copynumber: 4.4 Consensus size: 45
52217386 CCTGGACAAC
52217396 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG-CAGT
1 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGACAGT
** * ** * * * ** **
52217440 AGTGGAGCAGATCGAAGATGACGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCT-AAGACAGT
* * * **
52217485 AGTGGAGTAGATTGAAG---CCAGTAAT-TCTA-CTTCCCT-GGACAAC
1 AGTGGAATAGATTGAAGATTTCAG--ATCT-TATC-TCCCTAAGACAGT
*
52217528 AGAGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG-CAGT
1 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGACAGT
*
52217572 AGTGGAATAGATCGAAGAT
1 AGTGGAATAGATTGAAGAT
52217591 GGCGGATTTA
Statistics
Matches: 112, Mismatches: 26, Indels: 26
0.68 0.16 0.16
Matches are distributed among these distances:
42 5 0.04
43 17 0.15
44 66 0.59
45 20 0.18
46 4 0.04
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (45 bp):
AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGACAGT
Found at i:52219203 original size:2 final size:2
Alignment explanation
Indices: 52219113--52219192 Score: 58
Period size: 2 Copynumber: 41.0 Consensus size: 2
52219103 TTTGTTACCT
* ** * * *
52219113 TA TA TA TA TA TG TA CG TA TA TA TA T- TA TA CTT TC TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA
* *
52219155 T- TT TA TA -A TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52219193 CACACATATA
Statistics
Matches: 60, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
1 3 0.05
2 56 0.93
3 1 0.02
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:52219495 original size:4 final size:4
Alignment explanation
Indices: 52219486--52219515 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
52219476 TTTTTAAATT
52219486 TTTA TTTA TTTA TTTA TTTA TCTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA T-TTA TTTA T
52219516 ATACAATTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:52219946 original size:98 final size:98
Alignment explanation
Indices: 52219828--52220024 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
52219818 TTTAAAATCA
* *
52219828 TAAAGGAAATATTCCAAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATTGTGCCCTAACATATTGGGTGTGATTTC
* *
52219893 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGCGGATATTCTTTTAAAG
* *
52219926 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATTGTGCCCTAACATATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATTGTGCCCTAACATATTGGGTGTGATTTC
52219991 TTAAATCTTGGATAAGCGGATATTCTTTTAAAG
66 TTAAATCTTGGATAAGCGGATATTCTTTTAAAG
52220024 T
1 T
52220025 TTTATTGTAC
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATTGTGCCCTAACATATTGGGTGTGATTTC
TTAAATCTTGGATAAGCGGATATTCTTTTAAAG
Found at i:52222367 original size:2 final size:2
Alignment explanation
Indices: 52222360--52222399 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
52222350 TAAAATATTG
52222360 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
52222400 TACTATACCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:52223441 original size:13 final size:13
Alignment explanation
Indices: 52223420--52223452 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
52223410 AAAAATGATG
52223420 AAATGAAAATGAA
1 AAATGAAAATGAA
*
52223433 AAGTGAAAATGAA
1 AAATGAAAATGAA
52223446 AAATGAA
1 AAATGAA
52223453 GAACGGAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.15
Consensus pattern (13 bp):
AAATGAAAATGAA
Found at i:52223858 original size:13 final size:13
Alignment explanation
Indices: 52223840--52223864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52223830 TAAATCAATT
52223840 TCTTTGTTATCCA
1 TCTTTGTTATCCA
52223853 TCTTTGTTATCC
1 TCTTTGTTATCC
52223865 TCGACAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.24, G:0.08, T:0.56
Consensus pattern (13 bp):
TCTTTGTTATCCA
Found at i:52226025 original size:2 final size:2
Alignment explanation
Indices: 52226018--52226057 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
52226008 ACATACGTTT
*
52226018 TA TA TA TA TA TA TA TA T- TA TA T- TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52226058 CATTTCTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:52228059 original size:132 final size:131
Alignment explanation
Indices: 52227823--52228084 Score: 461
Period size: 132 Copynumber: 2.0 Consensus size: 131
52227813 AAATAATAAG
*
52227823 GCAGTAGTGGAGCAGATCGAAAATGGCGGATTTACCTCCCTGAGGTTACAGTGGAGTACATTGAA
1 GCAGTAGTGGAGCAGATCGAAAATGGCGGATTTACCTCCCTGAGGTTACAATGGAGTACATTGAA
* *
52227888 GCCAATAATTCTATCTCTCTGGGCAGCAGTGGTATAGATTGAAGATTACAGATCTTATCTCCCTA
66 GCCAATAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA
52227953 A
131 A
* * *
52227954 GCAGTGGTGGAGCAGATCGGAGATGGCGGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGA
1 GCAGTAGTGGAGCAGATCGAAAATGGCGGA-TTTACCTCCCTGAGGTTACAATGGAGTACATTGA
52228019 AGCCAATAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCT
65 AGCCAATAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCT
52228084 A
130 A
52228085 GGTAGCGAAG
Statistics
Matches: 124, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
131 27 0.22
132 97 0.78
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (131 bp):
GCAGTAGTGGAGCAGATCGAAAATGGCGGATTTACCTCCCTGAGGTTACAATGGAGTACATTGAA
GCCAATAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTA
A
Found at i:52228079 original size:44 final size:44
Alignment explanation
Indices: 52227899--52228083 Score: 117
Period size: 44 Copynumber: 4.2 Consensus size: 44
52227889 CCAATAATTC
* *
52227899 TATCTCTCTGGGCAGCAGTGGTATAGATTGAAGATTACAGATCT
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
** ** ** * * ** * *
52227943 TATCTCCCTAAGCAGTGGTGGAGCAGATCGGAGATGGCGGATTT
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * * * *
52227987 TACCTCCCTGAGGTTA-CAATGGAGTACATTGAAGCCAATA-A-TTC-
1 TATCTCCCTG-GG-CAGCAGTGGAATAGATTGAAG--ATTACAGATCT
52228031 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
52228075 TATCTCCCT
1 TATCTCCCT
52228084 AGGTAGCGAA
Statistics
Matches: 95, Mismatches: 38, Indels: 16
0.64 0.26 0.11
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 19 0.20
44 56 0.59
45 13 0.14
46 1 0.01
47 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
Found at i:52228165 original size:44 final size:45
Alignment explanation
Indices: 52228102--52228201 Score: 118
Period size: 45 Copynumber: 2.2 Consensus size: 45
52228092 AAGTAGATCA
*
52228102 AAGTTGCAGTGGGGAAGACT-AAGGA-AGC-AAGTCTTATC-CTCCTG
1 AAGTTGCAGTGCGGAAGACTGAA-GATAGCGAA-TCTTATCTC-CCTG
* *
52228146 AAGTTGCAGTGCGGCAGACTGAAGATGGCGAATCTTATCTCCCTG
1 AAGTTGCAGTGCGGAAGACTGAAGATAGCGAATCTTATCTCCCTG
52228191 AAGTTGCAGTG
1 AAGTTGCAGTG
52228202 GAGCAGGTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
44 20 0.41
45 26 0.53
46 3 0.06
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
AAGTTGCAGTGCGGAAGACTGAAGATAGCGAATCTTATCTCCCTG
Found at i:52228239 original size:44 final size:44
Alignment explanation
Indices: 52228176--52228287 Score: 138
Period size: 44 Copynumber: 2.5 Consensus size: 44
52228166 GAAGATGGCG
* *
52228176 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTAAAGCCA-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAAC-GGATTAAAACCACA
* *
52228219 TAATCCTATCTCCCTGAAGTTGCAATGGAACGGATTAAAACCACA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAACGGATTAAAACCACA
* *
52228264 GATCTTATCTCTCTGAAGTTGCAG
1 AATCTTATCTCCCTGAAGTTGCAG
52228288 AGGGCGGATC
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
43 2 0.03
44 55 0.95
45 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACGGATTAAAACCACA
Found at i:52228352 original size:128 final size:128
Alignment explanation
Indices: 52228178--52228415 Score: 336
Period size: 128 Copynumber: 1.9 Consensus size: 128
52228168 AGATGGCGAA
** * *
52228178 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCAATAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGACAAAGCAAACAATCCTATCTCCCTGAAGTTGCA
* *
52228243 ATGGAACGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGAGGGCGGATCGCATCCAG
66 ATGGAACGAATTAAAACCACAGATCTCATCTCTCTGAAGTTGCAGAGGGCGGATCGCATCCAG
* *
52228306 TCTTATCTTCCTGAAGTTGCAGTGGAGCA-GACAGAAG-AAACCAATCCTATCTCCTTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGACA-AAGCAAA-CAATCCTATCTCCCTGAAGTTG
* ** *
52228369 TAATGGAGTGAATTAAAACCACATATCTCATCTCTCTGAAGTTGCAG
64 CAATGGAACGAATTAAAACCACAGATCTCATCTCTCTGAAGTTGCAG
52228416 CAGAGTAGAT
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
127 4 0.04
128 92 0.96
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (128 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGACAAAGCAAACAATCCTATCTCCCTGAAGTTGCA
ATGGAACGAATTAAAACCACAGATCTCATCTCTCTGAAGTTGCAGAGGGCGGATCGCATCCAG
Found at i:52230384 original size:60 final size:61
Alignment explanation
Indices: 52230310--52230423 Score: 144
Period size: 60 Copynumber: 1.9 Consensus size: 61
52230300 TATTTTGTAA
* * * *
52230310 ATATATACACATATACATA-TTTTTATTTTTTTAT-CTTATTTTCATAATTTTTACGTACAT
1 ATATATACACATATACATACATTTT-TTTGTATATACATATTTTCATAATTTTTACGTACAT
*
52230370 ATATATAC-CTATATACATACATTTTTTTGTATATACATATTTTCATATTTTTTA
1 ATATATACAC-ATATACATACATTTTTTTGTATATACATATTTTCATAATTTTTA
52230424 TATATTTAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
59 1 0.02
60 24 0.52
61 21 0.46
ACGTcount: A:0.32, C:0.11, G:0.02, T:0.54
Consensus pattern (61 bp):
ATATATACACATATACATACATTTTTTTGTATATACATATTTTCATAATTTTTACGTACAT
Found at i:52232312 original size:13 final size:13
Alignment explanation
Indices: 52232294--52232319 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
52232284 AAAGAGATTT
52232294 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
52232307 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
52232320 AAAATTGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
GTTTTCTAGTAAA
Found at i:52232390 original size:19 final size:19
Alignment explanation
Indices: 52232350--52232391 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
52232340 GTCTCTTTTC
* *
52232350 GCATTCATTTCATGCATTT
1 GCATTCATTACATGCATAT
52232369 GCATTACATTACAT-CATAT
1 GCATT-CATTACATGCATAT
52232388 GCAT
1 GCAT
52232392 CAAAGATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (19 bp):
GCATTCATTACATGCATAT
Found at i:52233848 original size:22 final size:22
Alignment explanation
Indices: 52233823--52233866 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
52233813 ATGATGCGAG
52233823 CACACAATGTGAATACCATGCT
1 CACACAATGTGAATACCATGCT
52233845 CACACAATGTGAATACCATGCT
1 CACACAATGTGAATACCATGCT
52233867 GGGGTTGCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.23
Consensus pattern (22 bp):
CACACAATGTGAATACCATGCT
Found at i:52234312 original size:21 final size:21
Alignment explanation
Indices: 52234287--52234328 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
52234277 GCAAATGTTC
52234287 TTTCATTCTTTACGATTTTTT
1 TTTCATTCTTTACGATTTTTT
**
52234308 TTTCATTCTTTTGGATTTTTT
1 TTTCATTCTTTACGATTTTTT
52234329 CTGCGAAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.07, T:0.69
Consensus pattern (21 bp):
TTTCATTCTTTACGATTTTTT
Found at i:52235252 original size:22 final size:21
Alignment explanation
Indices: 52235227--52235271 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
52235217 AAAAATGATG
52235227 AAATGAAAAAAT-GAAAAGTGAA
1 AAATG-AAAAATGGAAAAGT-AA
*
52235249 AAATGAAGAATGGAAAAGTAA
1 AAATGAAAAATGGAAAAGTAA
52235270 AA
1 AA
52235272 TGGAGAGGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.67, C:0.00, G:0.20, T:0.13
Consensus pattern (21 bp):
AAATGAAAAATGGAAAAGTAA
Found at i:52236691 original size:89 final size:89
Alignment explanation
Indices: 52236540--52237204 Score: 1010
Period size: 89 Copynumber: 7.5 Consensus size: 89
52236530 AGTAAGCTAG
* * * *
52236540 GAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAAACCAAAGATACCAGATCTTGTCTT
1 GAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAAAACAGATCTTGTCTT
52236605 CCCATACTGGTGGCGAAGTAGATC
66 CCCATACTGGTGGCGAAGTAGATC
* *
52236629 GAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTT
1 GAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAAAACAGATCTTGTCTT
*
52236694 CCCATACTGGTGGTGAAGTAGATC
66 CCCATACTGGTGGCGAAGTAGATC
*
52236718 GAAGAAAACAGATCTTGTCTTCATGTACTGACGTGAAGTAGATCAAAGAAAACAGATCTTGTCTT
1 GAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAAAACAGATCTTGTCTT
52236783 CCCATACTGGTGGCGAAGTAGATC
66 CCCATACTGGTGGCGAAGTAGATC
* * *
52236807 GAAGAAAATAGATTTTGTCTTTATGTACTGGCGTGAAGTAGATCAAAGAAAACAGATCTTGTCTT
1 GAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAAAACAGATCTTGTCTT
*
52236872 CCCATACTGGTGGCGAAATAGATC
66 CCCATACTGGTGGCGAAGTAGATC
* * *
52236896 GAAGAAAACATATCTTGTCTTTATGTACTGGCGTGAAGTAGATCAAAGAAAACAGATCTTCTCTT
1 GAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAAAACAGATCTTGTCTT
52236961 CCCATACTGGTGGCGAAGTAGATC
66 CCCATACTGGTGGCGAAGTAGATC
* * * *
52236985 AAAGAAAACAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGCCTT
1 GAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAAAACAGATCTTGTCTT
*
52237050 CCCATACTGGTGGCGAAGCAGATC
66 CCCATACTGGTGGCGAAGTAGATC
* * * *
52237074 GAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAATAAATCTTGTCTT
1 GAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAAAACAGATCTTGTCTT
**** * * * *
52237139 TATGTATTAG-CGTGAAGTAGATC
66 CCCATACTGGTGGCGAAGTAGATC
*
52237162 GAA-AAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
1 GAAGAAAA-CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGAT
52237205 TGAAGATTAC
Statistics
Matches: 533, Mismatches: 42, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
87 4 0.01
88 48 0.09
89 481 0.90
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (89 bp):
GAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAAAACAGATCTTGTCTT
CCCATACTGGTGGCGAAGTAGATC
Found at i:52237351 original size:131 final size:132
Alignment explanation
Indices: 52237200--52237498 Score: 537
Period size: 132 Copynumber: 2.3 Consensus size: 132
52237190 TGGCGTGAAG
52237200 TAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA-TT
1 TAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTT
*
52237264 TACCTCCCCGAGGTTACAGTGGAGTACATTAAAGCCAATAATTCTATCTCCCTGGGCAGCAGTGG
66 TACCTCCCCGAGGTTACAGTGGAGTACATTAAAGCCAATAATTCTATCTCCCTGAGCAGCAGTGG
52237329 AA
131 AA
* *
52237331 TAGATTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCTGATTT
1 TAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTT
* *
52237396 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCTGAGCAGCAGTGG
66 TACCTCCCCGAGGTTACAGTGGAGTACATTAAAGCCAATAATTCTATCTCCCTGAGCAGCAGTGG
52237461 AA
131 AA
*
52237463 TAGATTGAAGATTACAGATCTTATCTCCCTAGGCAG
1 TAGATTGAAGATTACAGATCTTATCTCCCTAAGCAG
52237499 CGAAGTAGAT
Statistics
Matches: 160, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
131 60 0.38
132 100 0.62
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (132 bp):
TAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTT
TACCTCCCCGAGGTTACAGTGGAGTACATTAAAGCCAATAATTCTATCTCCCTGAGCAGCAGTGG
AA
Found at i:52237499 original size:44 final size:44
Alignment explanation
Indices: 52237198--52237499 Score: 174
Period size: 44 Copynumber: 6.9 Consensus size: 44
52237188 ATTGGCGTGA
* *
52237198 AGTAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGG
1 AGTAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGG
* * ** * * * *
52237242 AGCAGATCGAAGATGGCGGAT-TTACCTCCCCGAGGTTA-CAGTGG
1 AGTAGATTGAAGATTACAGATCTTATCT-CCCTAGG-CAGCAGTGG
* * * * *
52237286 AGTACATTAAAGCCAATA-A-TTC-TATCTCCCTGGGCAGCAGTGG
1 AGTAGATTGAAG--ATTACAGATCTTATCTCCCTAGGCAGCAGTGG
* * * *
52237329 AATAGATTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGG
1 AGTAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGG
* * ** * * * *
52237373 AGCAGATCGAAGATGGCTGATTTTACCTCCCTGAGGTTA-CAGTGG
1 AGTAGATTGAAGATTACAGATCTTATCTCCCT-AGG-CAGCAGTGG
* * *
52237418 AGTACATTGAAGCCAATA-A-TTC-TATCTCCCT-GAGCAGCAGTGG
1 AGTAGATTGAAG--ATTACAGATCTTATCTCCCTAG-GCAGCAGTGG
*
52237461 AATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGC
1 AGTAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGC
52237500 GAAGTAGATC
Statistics
Matches: 181, Mismatches: 58, Indels: 38
0.65 0.21 0.14
Matches are distributed among these distances:
41 6 0.03
42 5 0.03
43 46 0.25
44 102 0.56
45 19 0.10
46 2 0.01
47 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (44 bp):
AGTAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGG
Found at i:52237574 original size:44 final size:45
Alignment explanation
Indices: 52237511--52237616 Score: 130
Period size: 45 Copynumber: 2.4 Consensus size: 45
52237501 AAGTAGATCA
*
52237511 AAGTTGCAGTGGGGCAGACT-AAGGA-AGC-AAGTCTTATCCTCC-TG
1 AAGTTGCAGTGGGGCAGACTGAA-GATAGCGAA-TATTAT-CTCCATG
*
52237555 AAGTTGCAGTGGGGCAGACTGAAGATGGCGAATATTATCTCCATG
1 AAGTTGCAGTGGGGCAGACTGAAGATAGCGAATATTATCTCCATG
*
52237600 AAGTTGCAGTGGAGCAG
1 AAGTTGCAGTGGGGCAG
52237617 GTTAAAGCCA
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
44 26 0.47
45 27 0.49
46 2 0.04
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (45 bp):
AAGTTGCAGTGGGGCAGACTGAAGATAGCGAATATTATCTCCATG
Found at i:52237649 original size:44 final size:44
Alignment explanation
Indices: 52237590--52237834 Score: 161
Period size: 44 Copynumber: 5.7 Consensus size: 44
52237580 TGGCGAATAT
* *
52237590 TATCTC-CATGAAGTTGCAGTGGAGCAGGTTAAAGCCAATA-ATCC
1 TATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAACC-ATAGATCC
*
52237634 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCATAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCATAGATCC
* * *** * *
52237678 TATCTCTCTGAAGTTGCAGAGG-GCGGATCGCATCC--AG-TCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCATAGATCC
* **
52237718 TATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACC--A-ATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAG--ATTA-AAACCATAGATCC
* * ** * *
52237762 TATCTC-CTTGAAGTTGTAATGGAGTGGATTAAAACCACATAT-C
1 TATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAACCATAGATCC
**
52237805 TCATCTCTCTGAAGTTGCAGCAGAGCAGAT
1 T-ATCTCTCTGAAGTTGCAGTGGAGCAGAT
52237835 CGCATCAGAT
Statistics
Matches: 158, Mismatches: 30, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
40 23 0.15
41 10 0.06
42 2 0.01
43 16 0.10
44 105 0.66
45 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCATAGATCC
Found at i:52237765 original size:128 final size:129
Alignment explanation
Indices: 52237589--52237840 Score: 323
Period size: 128 Copynumber: 2.0 Consensus size: 129
52237579 ATGGCGAATA
** * * *
52237589 TTATCTCCATGAAGTTGCAGTGGAGCAGGTTAAAGCCAATAATCCTATCT-CTCTGAAGTTGCAG
1 TTATCTCCATGAAGTTGCAGTGGAGCAGGACAAAGCAAACAATCCTATCTCCT-TGAAGTTGCAA
* * * *
52237653 TGGAGCAGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAG-AGGGCGGATCGCATCCAGTC
65 TGGAGCAGATTAAAACCACAGATCTCATCTCTCTGAAGTTGCAGCAGAGCAGATCGCATCCAGTC
* *
52237717 TTATCTCCCTGAAGTTGCAGTGGAGCA-GACAGAAG-AAACCAATCCTATCTCCTTGAAGTTGTA
1 TTATCTCCATGAAGTTGCAGTGGAGCAGGACA-AAGCAAA-CAATCCTATCTCCTTGAAGTTGCA
** *
52237780 ATGGAGTGGATTAAAACCACATATCTCATCTCTCTGAAGTTGCAGCAGAGCAGATCGCATC
64 ATGGAGCAGATTAAAACCACAGATCTCATCTCTCTGAAGTTGCAGCAGAGCAGATCGCATC
52237841 AGATTTATTT
Statistics
Matches: 106, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
127 4 0.04
128 87 0.82
129 15 0.14
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (129 bp):
TTATCTCCATGAAGTTGCAGTGGAGCAGGACAAAGCAAACAATCCTATCTCCTTGAAGTTGCAAT
GGAGCAGATTAAAACCACAGATCTCATCTCTCTGAAGTTGCAGCAGAGCAGATCGCATCCAGTC
Found at i:52239839 original size:28 final size:26
Alignment explanation
Indices: 52239792--52239852 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
52239782 TTTACGTACA
*
52239792 TATATATACCTATATACATACATTTTTT
1 TATATATACATATATACAT--ATTTTTT
* * *
52239820 TGTATATACATATTTTCATATTTTTT
1 TATATATACATATATACATATTTTTT
52239846 TATATAT
1 TATATAT
52239853 TTAACAATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 13 0.46
28 15 0.54
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.56
Consensus pattern (26 bp):
TATATATACATATATACATATTTTTT
Found at i:52239935 original size:21 final size:21
Alignment explanation
Indices: 52239906--52239963 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
52239896 TTCTTTTATT
52239906 TTTTATAAATATATATACATA
1 TTTTATAAATATATATACATA
* * *
52239927 TTTTGTAAATACATGTACATA
1 TTTTATAAATATATATACATA
* *
52239948 TTATATATATATATAT
1 TTTTATAAATATATAT
52239964 TATTATTCTT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.48
Consensus pattern (21 bp):
TTTTATAAATATATATACATA
Found at i:52252940 original size:3 final size:3
Alignment explanation
Indices: 52252932--52252986 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
52252922 ATATATTAAA
52252932 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
52252980 ATT ATT A
1 ATT ATT A
52252987 AATAGTATAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:52253069 original size:7 final size:6
Alignment explanation
Indices: 52253050--52253081 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
52253040 GTAAATAATA
*
52253050 TTATTT TTATTT TTATTT TTATTT TTAATT TT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TT
52253082 CATAATCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TTATTT
Found at i:52253334 original size:21 final size:21
Alignment explanation
Indices: 52253284--52253334 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
52253274 ATTGAAAAAT
*
52253284 ATATAAAAATCTATTGTTTAA
1 ATATAAAAATCTATTGATTAA
*
52253305 AAATTAAAATAT-TA-TGATTAA
1 ATA-TAAAA-ATCTATTGATTAA
52253326 ATATAAAAA
1 ATATAAAAA
52253335 CCAACCTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
19 1 0.04
20 5 0.20
21 10 0.40
22 7 0.28
23 2 0.08
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (21 bp):
ATATAAAAATCTATTGATTAA
Found at i:52254743 original size:15 final size:16
Alignment explanation
Indices: 52254704--52254737 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
52254694 CTTAAAAATT
52254704 TTAAAAT-AATAT-AA
1 TTAAAATAAATATAAA
52254718 TTAAAATAAATATAAA
1 TTAAAATAAATATAAA
52254734 TTAA
1 TTAA
52254738 TTAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 5 0.28
16 6 0.33
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TTAAAATAAATATAAA
Found at i:52257094 original size:22 final size:21
Alignment explanation
Indices: 52257066--52257132 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 21
52257056 ACTATTAAAC
*
52257066 AAAGAGCACTAAAGTGCTACAT
1 AAAGAGCACTAATGTGCTA-AT
52257088 AAAGAGCA-TGAATGTGCTAA-
1 AAAGAGCACT-AATGTGCTAAT
52257108 ACAGAGAGCACTAATGTGCTAAT
1 A-A-AGAGCACTAATGTGCTAAT
52257131 AA
1 AA
52257133 CCGAAGAGTG
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
20 1 0.03
21 3 0.08
22 33 0.85
23 2 0.05
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (21 bp):
AAAGAGCACTAATGTGCTAAT
Found at i:52258310 original size:37 final size:37
Alignment explanation
Indices: 52258266--52258342 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
52258256 TTCCTTTTCC
52258266 ACTACTACTATGTATCTCCTAACTTATTATTTTTCTT
1 ACTACTACTATGTATCTCCTAACTTATTATTTTTCTT
52258303 ACTACTACTATGTATCTCCTAACTTATTATTTTTCTT
1 ACTACTACTATGTATCTCCTAACTTATTATTTTTCTT
52258340 ACT
1 ACT
52258343 TTGGCCACAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.25, C:0.22, G:0.03, T:0.51
Consensus pattern (37 bp):
ACTACTACTATGTATCTCCTAACTTATTATTTTTCTT
Found at i:52259074 original size:43 final size:43
Alignment explanation
Indices: 52259025--52259112 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
52259015 TTTTCTTTTA
*
52259025 AGATCGACATAAGATTTTTGTCTATCTATAGTTGCTTTTAAAC
1 AGATCGACATAAGACTTTTGTCTATCTATAGTTGCTTTTAAAC
52259068 AGATCGACATAAGACTTTTGTCTATCTATAGTTGCTTTTAAAC
1 AGATCGACATAAGACTTTTGTCTATCTATAGTTGCTTTTAAAC
52259111 AG
1 AG
52259113 TCTCTGATCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.40
Consensus pattern (43 bp):
AGATCGACATAAGACTTTTGTCTATCTATAGTTGCTTTTAAAC
Found at i:52262773 original size:22 final size:23
Alignment explanation
Indices: 52262731--52262773 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
52262721 GGATGGAAAT
52262731 TTTTGGGGAAGAAGAAATGATGG
1 TTTTGGGGAAGAAGAAATGATGG
52262754 TTTTGGGTGAA-AA-AAATGAT
1 TTTTGGG-GAAGAAGAAATGAT
52262774 ATCTCTCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.37
23 9 0.47
24 3 0.16
ACGTcount: A:0.37, C:0.00, G:0.33, T:0.30
Consensus pattern (23 bp):
TTTTGGGGAAGAAGAAATGATGG
Found at i:52270515 original size:21 final size:22
Alignment explanation
Indices: 52270474--52270526 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
52270464 CTAGTGAAAT
*
52270474 TTCTCTTCATCTTTCTATTT-C
1 TTCTCTTTATCTTTCTATTTCC
*
52270495 TTCTCTTTTTCTTT-TATTTTCC
1 TTCTCTTTATCTTTCTA-TTTCC
*
52270517 TTTTCTTTAT
1 TTCTCTTTAT
52270527 ACCATATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 2 0.08
21 15 0.58
22 9 0.35
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.70
Consensus pattern (22 bp):
TTCTCTTTATCTTTCTATTTCC
Found at i:52277012 original size:14 final size:14
Alignment explanation
Indices: 52276977--52277019 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
52276967 TTCTGATTTG
52276977 ATCAATATGTAT--
1 ATCAATATGTATAA
*
52276989 A-CACTATGTATAA
1 ATCAATATGTATAA
52277002 ATCAATATGTATAA
1 ATCAATATGTATAA
52277016 ATCA
1 ATCA
52277020 TAAACAATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 9 0.35
12 1 0.04
13 1 0.04
14 15 0.58
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.35
Consensus pattern (14 bp):
ATCAATATGTATAA
Found at i:52277117 original size:23 final size:23
Alignment explanation
Indices: 52277087--52277156 Score: 95
Period size: 23 Copynumber: 3.0 Consensus size: 23
52277077 AGTTTCAATT
52277087 TAAGACACTGCCATACAAGGATC
1 TAAGACACTGCCATACAAGGATC
*** *
52277110 TAAGACACTATAATCACAAGAATC
1 TAAGACACTGCCAT-ACAAGGATC
52277134 TAAGACACTGCCATACAAGGATC
1 TAAGACACTGCCATACAAGGATC
52277157 ATTTCAAGAC
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
23 19 0.50
24 19 0.50
ACGTcount: A:0.43, C:0.24, G:0.14, T:0.19
Consensus pattern (23 bp):
TAAGACACTGCCATACAAGGATC
Found at i:52277671 original size:12 final size:13
Alignment explanation
Indices: 52277656--52277689 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
52277646 ATGGTGACAT
52277656 TAATCAAAGT-AA
1 TAATCAAAGTAAA
*
52277668 TAATCAAAATAAA
1 TAATCAAAGTAAA
52277681 TAATCAAAG
1 TAATCAAAG
52277690 AAAAAAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.62, C:0.09, G:0.06, T:0.24
Consensus pattern (13 bp):
TAATCAAAGTAAA
Found at i:52279416 original size:14 final size:14
Alignment explanation
Indices: 52279387--52279438 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
52279377 TAGTAACTCT
*
52279387 TAAACCTTAAACCC
1 TAAACCATAAACCC
* *
52279401 TACACCATATACCC
1 TAAACCATAAACCC
52279415 TAAACCATAAACCC
1 TAAACCATAAACCC
*
52279429 TAAACTATAA
1 TAAACCATAA
52279439 TCATAATTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:52279625 original size:22 final size:21
Alignment explanation
Indices: 52279565--52279634 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
52279555 CCTGAATCTC
*
52279565 TAAA-CCCTAAATTCCTAACTCT
1 TAAACCCCT-AATT-CTAACCCT
* *
52279587 TAATCCCATAATGTCTAACCCT
1 TAAACCCCTAAT-TCTAACCCT
*
52279609 TAAACCCCTAACTTCTAAACCT
1 TAAACCCCTAA-TTCTAACCCT
52279631 TAAA
1 TAAA
52279635 TCTCAACCCT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 34 0.87
23 5 0.13
ACGTcount: A:0.37, C:0.31, G:0.01, T:0.30
Consensus pattern (21 bp):
TAAACCCCTAATTCTAACCCT
Found at i:52279666 original size:14 final size:14
Alignment explanation
Indices: 52279645--52279693 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
52279635 TCTCAACCCT
52279645 TAAACCATAATCCC
1 TAAACCATAATCCC
*
52279659 TAATCCATAATCCC
1 TAAACCATAATCCC
*
52279673 TAAAACCATACTCCC
1 T-AAACCATAATCCC
52279688 TAAACC
1 TAAACC
52279694 TTAAAATAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
14 19 0.61
15 12 0.39
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCATAATCCC
Found at i:52280115 original size:42 final size:41
Alignment explanation
Indices: 52280043--52280163 Score: 170
Period size: 42 Copynumber: 2.9 Consensus size: 41
52280033 TAAAATGTAT
* * **
52280043 TTAGAGGCGCCTTTTCAAAAACGCCGCTAAAACCTTGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
*
52280084 TTAGCGGCGCTTTTTCAAAAAACGCCGCTAAAGCCCCGAGCA
1 TTAGCGGCGCTTTTTC-AAAAACGCCGCTAAAACCCCGAGCA
* *
52280126 TTAGCGGCGCTTTTTCAAAAACACCGCTAAAGCCCCGA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGA
52280164 AAGGTCAAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
41 35 0.48
42 38 0.52
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCCGAGCA
Found at i:52286796 original size:16 final size:18
Alignment explanation
Indices: 52286763--52286796 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
52286753 TTGAGTATAG
52286763 TATATTTGTTTGTAAATT
1 TATATTTGTTTGTAAATT
52286781 TATATTT-TTT-TAAATT
1 TATATTTGTTTGTAAATT
52286797 GATTGGTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 3 0.19
18 7 0.44
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
TATATTTGTTTGTAAATT
Found at i:52294779 original size:14 final size:14
Alignment explanation
Indices: 52294760--52294789 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
52294750 ATGATGTAAA
52294760 CCGTGGATCTCTAT
1 CCGTGGATCTCTAT
52294774 CCGTGGATCTCTAT
1 CCGTGGATCTCTAT
52294788 CC
1 CC
52294790 ATAATAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.33, G:0.20, T:0.33
Consensus pattern (14 bp):
CCGTGGATCTCTAT
Found at i:52301926 original size:17 final size:18
Alignment explanation
Indices: 52301889--52301926 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
52301879 ATGCTCTCCT
*
52301889 TTTTTGCTGCTGTTGTTTG
1 TTTTTGCTGC-GTTGTCTG
52301908 TTTTTGCTGC-TTGTCTG
1 TTTTTGCTGCGTTGTCTG
52301925 TT
1 TT
52301927 CGTCTCTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 8 0.44
19 10 0.56
ACGTcount: A:0.00, C:0.13, G:0.24, T:0.63
Consensus pattern (18 bp):
TTTTTGCTGCGTTGTCTG
Found at i:52303787 original size:41 final size:41
Alignment explanation
Indices: 52303742--52303874 Score: 212
Period size: 41 Copynumber: 3.2 Consensus size: 41
52303732 ATTGGCACTT
52303742 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
*
52303783 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGACA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
** * * *
52303824 AGCCTGCTAGACTTAAAGTCTGAAACATATCACTGGCATCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
52303865 AGCCTGCTAG
1 AGCCTGCTAG
52303875 GCACCGAGCC
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 85 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (41 bp):
AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
Found at i:52305547 original size:28 final size:26
Alignment explanation
Indices: 52305514--52305565 Score: 86
Period size: 28 Copynumber: 1.9 Consensus size: 26
52305504 TTTTTAATGT
52305514 TTATTATAACATAATAATATATTATACC
1 TTATTATAACAT-AT-ATATATTATACC
52305542 TTATTATAACATATATATATTATA
1 TTATTATAACATATATATATTATA
52305566 TTAATAACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 10 0.42
27 2 0.08
28 12 0.50
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (26 bp):
TTATTATAACATATATATATTATACC
Found at i:52305964 original size:44 final size:43
Alignment explanation
Indices: 52305901--52306310 Score: 162
Period size: 44 Copynumber: 9.5 Consensus size: 43
52305891 TTTTAATCCA
* *
52305901 CTCCACTGTAA-CTCTAGGGAGATAGGATTATCTGCTTCAATCTG
1 CTCCACTGCAACCTC-AGGGAGATA-GATTATCTGCTTCGATCTG
* * *
52305945 CTCCACTGCAACCTCAGGGAGATAAGACTTA-CTTCTTCGACCTA
1 CTCCACTGCAACCTCAGGGAGAT-AGA-TTATCTGCTTCGATCTG
* * * * *
52305989 CTCCGCTGCAACCTCAGGGAGATA-A-GACCTGATGT-GATCTT
1 CTCCACTGCAACCTCAGGGAGATAGATTATCTGCT-TCGATCTG
* * * * * ** * *
52306030 CTCTACTACAACTTGAGAGAGATAAGATCTAT-TATTTCAATCCG
1 CTCCACTGCAACCTCAGGGAGAT-AGAT-TATCTGCTTCGATCTG
* * * *
52306074 CTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATTTG
1 CTCCACTGCAACCTCAGGGAGATA-GATTATCTGCTTCGATCTG
* * *
52306118 CTCCACTGCAACCTTAGAGAGATA-A-TACCTGATTCTTCGATC-G
1 CTCCACTGCAACCTCAGGGAGATAGATTATCTG---CTTCGATCTG
* * * * *
52306161 ACTCCGCTGCAACCTCAGGGAGATA-A-GACCTGATAT-GATCTA
1 -CTCCACTGCAACCTCAGGGAGATAGATTATCTGCT-TCGATCTG
** * ** * ** * *
52306203 CTCTGCTGTAATTTCAGAGAGATAAGATCTAT-TATTTCAATCCG
1 CTCCACTGCAACCTCAGGGAGAT-AGAT-TATCTGCTTCGATCTG
* * * * *
52306247 TTCCACTGTAACTTCAGGGAGATAGGATTATCAGCTTCCATCTG
1 CTCCACTGCAACCTCAGGGAGATA-GATTATCTGCTTCGATCTG
*
52306291 CTCCACTGTAACCTCAGGGA
1 CTCCACTGCAACCTCAGGGA
52306311 TATAAGACCT
Statistics
Matches: 270, Mismatches: 71, Indels: 50
0.69 0.18 0.13
Matches are distributed among these distances:
40 1 0.00
41 51 0.19
42 6 0.02
43 14 0.05
44 189 0.70
45 9 0.03
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (43 bp):
CTCCACTGCAACCTCAGGGAGATAGATTATCTGCTTCGATCTG
Found at i:52306190 original size:173 final size:173
Alignment explanation
Indices: 52305895--52306374 Score: 694
Period size: 173 Copynumber: 2.8 Consensus size: 173
52305885 CTACTGTTTT
* * *
52305895 AATCCACTCCACTGTAAC-TCTAGGGAGATAGGATTATCTGCTTCAATCTGCTCCACTGCAACCT
1 AATCCGCTCCACTGTAACTTC-AGGGAGATAGGATTATCAGCTTCCATCTGCTCCACTGCAACCT
* *
52305959 CAGGGAGATAAGA-CTTACTTCTTCGACCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATG
65 CAGGGAGATAAGACCTGA-TTCTTCGATCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATG
* *
52306023 TGATCTTCTCTACTACAACTTGAGAGAGATAAGATCTATTATTTC
129 TGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTTC
* * *
52306068 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTCCATTTGCTCCACTGCAACCTT
1 AATCCGCTCCACTGTAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGCTCCACTGCAACCTC
* * * *
52306133 AGAGAGATAATACCTGATTCTTCGATCGACTCCGCTGCAACCTCAGGGAGATAAGACCTGATATG
66 AGGGAGATAAGACCTGATTCTTCGATCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTG
* ** *
52306198 ATCTACTCTGCTGTAATTTCAGAGAGATAAGATCTATTATTTC
131 ATCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTTC
* *
52306241 AATCCGTTCCACTGTAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGCTCCACTGTAACCTC
1 AATCCGCTCCACTGTAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGCTCCACTGCAACCTC
* * * * * *
52306306 AGGGATATAAGACCTGCTTCTTCGATCTACTCTGCTGCAACCTCAGAGAGATAAGTCCTGGTGTG
66 AGGGAGATAAGACCTGATTCTTCGATCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTG
52306371 ATCT
131 ATCT
52306375 CAACGATCTG
Statistics
Matches: 272, Mismatches: 33, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
173 267 0.98
174 5 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (173 bp):
AATCCGCTCCACTGTAACTTCAGGGAGATAGGATTATCAGCTTCCATCTGCTCCACTGCAACCTC
AGGGAGATAAGACCTGATTCTTCGATCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATGTG
ATCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTTC
Found at i:52324407 original size:32 final size:31
Alignment explanation
Indices: 52324366--52324427 Score: 106
Period size: 32 Copynumber: 2.0 Consensus size: 31
52324356 ATAAATAGAG
*
52324366 AGGTTAACATTTTGGTTTTCAAGGGAGAAAAA
1 AGGTTAACATTTTGGTTTTCAAAGGA-AAAAA
52324398 AGGTTAACATTTTGGTTTTCAAAGGAAAAA
1 AGGTTAACATTTTGGTTTTCAAAGGAAAAA
52324428 GTTGTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 4 0.14
32 25 0.86
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (31 bp):
AGGTTAACATTTTGGTTTTCAAAGGAAAAAA
Found at i:52339899 original size:13 final size:13
Alignment explanation
Indices: 52339881--52339906 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
52339871 AAAGAGATTT
52339881 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
52339894 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
52339907 AATTGAACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
GTTTTCTAGTAAA
Found at i:52342768 original size:28 final size:28
Alignment explanation
Indices: 52342717--52342827 Score: 150
Period size: 28 Copynumber: 4.0 Consensus size: 28
52342707 CTTACAAAAT
* *
52342717 AGAAAGCTCGCACGAAGTAGAGCTAAAC
1 AGAAAGCTCACACAAAGTAGAGCTAAAC
* *
52342745 AGAAAGCTCACACAAAGAAAAGCTAAAC
1 AGAAAGCTCACACAAAGTAGAGCTAAAC
* *
52342773 AGAGAGCTCGCACAAAGTAGAGCTAAAC
1 AGAAAGCTCACACAAAGTAGAGCTAAAC
* *
52342801 AGAGAGCTCACATAAAGTAGAGCTAAA
1 AGAAAGCTCACACAAAGTAGAGCTAAA
52342828 ACATTTGTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.48, C:0.20, G:0.22, T:0.11
Consensus pattern (28 bp):
AGAAAGCTCACACAAAGTAGAGCTAAAC
Found at i:52342809 original size:56 final size:56
Alignment explanation
Indices: 52342721--52342827 Score: 169
Period size: 56 Copynumber: 1.9 Consensus size: 56
52342711 CAAAATAGAA
*
52342721 AGCTCGCACGAAGTAGAGCTAAACAGAAAGCTCACACAAAGAAAAGCTAAACAGAG
1 AGCTCGCACAAAGTAGAGCTAAACAGAAAGCTCACACAAAGAAAAGCTAAACAGAG
* * * *
52342777 AGCTCGCACAAAGTAGAGCTAAACAGAGAGCTCACATAAAGTAGAGCTAAA
1 AGCTCGCACAAAGTAGAGCTAAACAGAAAGCTCACACAAAGAAAAGCTAAA
52342828 ACATTTGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.11
Consensus pattern (56 bp):
AGCTCGCACAAAGTAGAGCTAAACAGAAAGCTCACACAAAGAAAAGCTAAACAGAG
Found at i:52343678 original size:58 final size:59
Alignment explanation
Indices: 52343571--52343686 Score: 162
Period size: 58 Copynumber: 2.0 Consensus size: 59
52343561 AATAGGAATG
* * * *
52343571 TGAAAATGGAGAAATGAGAAATATTTGGAAATGATTATGCTTTTATCCAAAATGAAAAA
1 TGAAAATGGAGAAATGAGAAACATTTGAAAATGAATATGATTTTATCCAAAATGAAAAA
* * *
52343630 TGAAAATGGAGAAATG-GAACCATTTGAAAATGAATGTGATTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAATGAGAAACATTTGAAAATGAATATGATTTTATCCAAAATGAAAA
52343687 TGACCTATAA
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
58 34 0.68
59 16 0.32
ACGTcount: A:0.47, C:0.07, G:0.19, T:0.28
Consensus pattern (59 bp):
TGAAAATGGAGAAATGAGAAACATTTGAAAATGAATATGATTTTATCCAAAATGAAAAA
Found at i:52348877 original size:21 final size:21
Alignment explanation
Indices: 52348851--52348891 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
52348841 TCAAAACAAC
*
52348851 ATGGTTTTGCCTTTTAACTTA
1 ATGGTTTTGACTTTTAACTTA
52348872 ATGGTTTTGACTTTTAACTT
1 ATGGTTTTGACTTTTAACTT
52348892 TAAAAAAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.12, G:0.15, T:0.54
Consensus pattern (21 bp):
ATGGTTTTGACTTTTAACTTA
Found at i:52353063 original size:43 final size:41
Alignment explanation
Indices: 52353003--52353159 Score: 183
Period size: 43 Copynumber: 3.7 Consensus size: 41
52352993 TATGTATTTT
*
52353003 CGTGTAAGACCACGTCTGGGACTTTGGCATCGACTTGTGTATA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGA-TTGTG-ATA
* *
52353046 CGTGTAAGACCATGTCTGGGACATTGGCATCGTATT-TGATT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-ATTGTGATA
* *
52353087 TGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TGTGA-TA
* *
52353130 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
52353160 TGTACGAGCC
Statistics
Matches: 97, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
40 2 0.02
41 31 0.32
42 5 0.05
43 57 0.59
44 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (41 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATTGTGATA
Found at i:52353147 original size:84 final size:84
Alignment explanation
Indices: 52353004--52353159 Score: 219
Period size: 84 Copynumber: 1.9 Consensus size: 84
52352994 ATGTATTTTC
** * *
52353004 GTGTAAGACCACGTCTGGGACTTTGGCATCGACTTGTGTATACGTGTAAGACCATGTCTGGGACA
1 GTGTAAGACCACGTCTGGGACAGTGGCATCGACTTGTGTATACATGTAAGACCACGTCTGGGACA
52353069 TTGGCATCGTATTTGATTT
66 TTGGCATCGTATTTGATTT
52353088 GTGTAAGACC-CTGTCTGGGACAGTGGCATCGA-TATGTG-ATTACATGTAAGACCACGTCTGGG
1 GTGTAAGACCAC-GTCTGGGACAGTGGCATCGACT-TGTGTA-TACATGTAAGACCACGTCTGGG
*
52353150 ACGTTGGCAT
63 ACATTGGCAT
52353160 TGTACGAGCC
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
83 3 0.05
84 61 0.95
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (84 bp):
GTGTAAGACCACGTCTGGGACAGTGGCATCGACTTGTGTATACATGTAAGACCACGTCTGGGACA
TTGGCATCGTATTTGATTT
Found at i:52354068 original size:2 final size:2
Alignment explanation
Indices: 52354061--52354102 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
52354051 TTATGTGTTT
52354061 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52354102 T
1 T
52354103 GTGTGATATG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:52367725 original size:50 final size:50
Alignment explanation
Indices: 52367650--52367760 Score: 213
Period size: 50 Copynumber: 2.2 Consensus size: 50
52367640 NNNNNNNNNN
*
52367650 ATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTAC
1 ATGGGACCTCTCATCTCGGTGCCAACACCATGTCCCAGACATGGTCTTAC
52367700 ATGGGACCTCTCATCTCGGTGCCAACACCATGTCCCAGACATGGTCTTAC
1 ATGGGACCTCTCATCTCGGTGCCAACACCATGTCCCAGACATGGTCTTAC
52367750 ATGGGACCTCT
1 ATGGGACCTCT
52367761 TTACCCAAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.21, C:0.33, G:0.22, T:0.24
Consensus pattern (50 bp):
ATGGGACCTCTCATCTCGGTGCCAACACCATGTCCCAGACATGGTCTTAC
Found at i:52367876 original size:13 final size:13
Alignment explanation
Indices: 52367855--52367884 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
52367845 GCTTGGATAA
52367855 TCATCAAATAAAT
1 TCATCAAATAAAT
*
52367868 TCATGAAATAAAT
1 TCATCAAATAAAT
52367881 TCAT
1 TCAT
52367885 AATTGCTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:52369400 original size:124 final size:124
Alignment explanation
Indices: 52369171--52369538 Score: 547
Period size: 124 Copynumber: 3.0 Consensus size: 124
52369161 GCCCAACATG
* * * *
52369171 CTACTGTAGCAAAAGCGCGTTCACGAGGGCGTGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAACGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCAGC
* * * *
52369236 TAGAAGCAATTTTATACTATTTGCTCAGAAACGTTAAAAAAATTTATTTCTTCCATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAATGTCAAAAAAAATTATTTCTTCCATGAC
* * *
52369295 CTACTATAGCAAAAACGCGTCCACGAAGGCGCGATTTCACAAATTCTTCTCAATTAGCATCCAGC
1 CTACTGTAGCAAAAACGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCAGC
* *
52369360 TAGAAGTGATTTTATACTATTTGCTCAGAAATGTCCAAAAAAATTATTTCTTCCATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAATGTCAAAAAAAATTATTTCTTCCATGAC
* *
52369419 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCTAGC
1 CTACTGTAGCAAAAACGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCAGC
* * ***
52369484 TAGAAGCGATTTTATACTATTTGATCAGAAATATCAACTCGAAATTATTTCTTCC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAATGTCAA-AAAAAATTATTTCTTCC
52369539 GGGACCTAAA
Statistics
Matches: 218, Mismatches: 25, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
124 204 0.94
125 14 0.06
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.31
Consensus pattern (124 bp):
CTACTGTAGCAAAAACGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCAGC
TAGAAGCGATTTTATACTATTTGCTCAGAAATGTCAAAAAAAATTATTTCTTCCATGAC
Found at i:52369918 original size:13 final size:13
Alignment explanation
Indices: 52369900--52369924 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52369890 ATTAAAATTA
52369900 ATAAAATATTAAT
1 ATAAAATATTAAT
52369913 ATAAAATATTAA
1 ATAAAATATTAA
52369925 AATTTTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAAAATATTAAT
Found at i:52369918 original size:22 final size:22
Alignment explanation
Indices: 52369892--52369936 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
52369882 TTTAAAAAAT
52369892 TAAAATTAATAAAA-TATTAATA
1 TAAAA-TAATAAAATTATTAATA
* *
52369914 TAAAATATTAAAATTTTTAATA
1 TAAAATAATAAAATTATTAATA
52369936 T
1 T
52369937 TTTTAAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAAATAATAAAATTATTAATA
Found at i:52376745 original size:9 final size:10
Alignment explanation
Indices: 52376731--52376804 Score: 64
Period size: 10 Copynumber: 7.3 Consensus size: 10
52376721 AAAATATTTT
52376731 AAAA-TTAAA
1 AAAATTTAAA
52376740 AAAATTTAAA
1 AAAATTTAAA
52376750 AAAATTTAAAA
1 AAAATTT-AAA
52376761 AAAGTATTTTAAA
1 AAA--A-TTTAAA
* *
52376774 AATATTT--T
1 AAAATTTAAA
52376782 AAAATTTAAA
1 AAAATTTAAA
*
52376792 AAAAATTAAA
1 AAAATTTAAA
52376802 AAA
1 AAA
52376805 GTATGTAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
8 6 0.11
9 4 0.08
10 27 0.51
11 7 0.13
13 6 0.11
14 3 0.06
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:52376774 original size:12 final size:11
Alignment explanation
Indices: 52376672--52376785 Score: 66
Period size: 11 Copynumber: 10.9 Consensus size: 11
52376662 GGCCCATTTT
52376672 TATTTT-AAAA
1 TATTTTAAAAA
52376682 -ATTTTAAAAA
1 TATTTTAAAAA
***
52376692 -ATAAAAAAAA
1 TATTTTAAAAA
*
52376702 GTATTTTGAAAA
1 -TATTTTAAAAA
*
52376714 TATTTTGAAAA
1 TATTTTAAAAA
52376725 TATTTT--AAA
1 TATTTTAAAAA
52376734 -A--TTAAAAA
1 TATTTTAAAAA
*
52376742 -AATTTAAAAA
1 TATTTTAAAAA
* *
52376752 AATTTAAAAAAA
1 TATTT-TAAAAA
52376764 GTATTTTAAAAA
1 -TATTTTAAAAA
52376776 TATTTTAAAA
1 TATTTTAAAA
52376786 TTTAAAAAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 19
0.73 0.10 0.17
Matches are distributed among these distances:
6 2 0.02
8 5 0.06
9 8 0.10
10 18 0.22
11 30 0.36
12 16 0.19
13 4 0.05
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.38
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:52376801 original size:42 final size:41
Alignment explanation
Indices: 52376740--52376835 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
52376730 TAAAATTAAA
* * *
52376740 AAAATTTAAAAAAATTTAAAAAAAGTATTTTAAAAATATTTT
1 AAAATTTAAAAAAAATT-AAAAAAGTATGTAAAAAATATTTT
*
52376782 AAAATTTAAAAAAAATTAAAAAAGTATGTAAAAAATGTTTT
1 AAAATTTAAAAAAAATTAAAAAAGTATGTAAAAAATATTTT
52376823 AAAATTTAAAAAA
1 AAAATTTAAAAAA
52376836 TATATATTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 34 0.68
42 16 0.32
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (41 bp):
AAAATTTAAAAAAAATTAAAAAAGTATGTAAAAAATATTTT
Found at i:52376815 original size:62 final size:62
Alignment explanation
Indices: 52376678--52376817 Score: 153
Period size: 62 Copynumber: 2.3 Consensus size: 62
52376668 TTTTTATTTT
* * **
52376678 AAAAAT-TTTAAAAAATAAAAAAAAGTATTTTGAAAATATTTTGAAAATATTTTAAAATTAA
1 AAAAATATATAAAAAATAAAAAAAAGTATTTTAAAAATATTTTGAAAATATTAAAAAATTAA
* *
52376739 AAAAATTTA-AAAAAATTTAAAAAAAGTATTTTAAAAATATTTT-AAAAT-TTAAAAAAAATTAA
1 AAAAATATATAAAAAA-TAAAAAAAAGTATTTTAAAAATATTTTGAAAATATT--AAAAAATTAA
* *
52376801 AAAAGTATGTAAAAAAT
1 AAAAATATATAAAAAAT
52376818 GTTTTAAAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
60 2 0.03
61 17 0.26
62 41 0.62
63 6 0.09
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (62 bp):
AAAAATATATAAAAAATAAAAAAAAGTATTTTAAAAATATTTTGAAAATATTAAAAAATTAA
Found at i:52376827 original size:51 final size:52
Alignment explanation
Indices: 52376672--52376826 Score: 176
Period size: 52 Copynumber: 3.0 Consensus size: 52
52376662 GGCCCATTTT
** *
52376672 TATTTTAAAAATTTTAAAAAATAA--AAAAAAGTATTTTGAAAATATTTTGAAAA
1 TATTTT-AAAA-TTTAAAAAA-AATTAAAAAAGTATTTAAAAAATATTTTAAAAA
*
52376725 TATTTTAAAA-TTAAAAAAATTTAAAAAA--ATTTAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTTAAAAAAAATTAAAAAAGTATTT-AAAAAA-TATTTTAAAAA
* *
52376776 TATTTTAAAATTTAAAAAAAATTAAAAAAGTATGTAAAAAATGTTTTAAAA
1 TATTTTAAAATTTAAAAAAAATTAAAAAAGTATTTAAAAAATATTTTAAAA
52376827 TTTAAAAAAT
Statistics
Matches: 88, Mismatches: 7, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
49 5 0.06
50 12 0.14
51 26 0.30
52 30 0.34
53 12 0.14
54 3 0.03
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (52 bp):
TATTTTAAAATTTAAAAAAAATTAAAAAAGTATTTAAAAAATATTTTAAAAA
Found at i:52376832 original size:19 final size:19
Alignment explanation
Indices: 52376766--52376838 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
52376756 TAAAAAAAGT
*
52376766 ATTTTAAAAATATTTTAAA
1 ATTTAAAAAATATTTTAAA
* **
52376785 ATTTAAAAAAAATTAAAAA
1 ATTTAAAAAATATTTTAAA
*
52376804 AGTATGTAAAAAATGTTTTAAA
1 A-T-T-TAAAAAATATTTTAAA
52376826 ATTTAAAAAATAT
1 ATTTAAAAAATAT
52376839 ATATTTATTA
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
19 25 0.60
20 2 0.05
21 2 0.05
22 13 0.31
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (19 bp):
ATTTAAAAAATATTTTAAA
Found at i:52379010 original size:22 final size:21
Alignment explanation
Indices: 52378975--52379033 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
52378965 AAAGGGTATC
* *
52378975 TACAAATTAAATCTATAAGAT
1 TACAAATCATATCTATAAGAT
*
52378996 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TATAAGAT
* *
52379019 TGCATATCATATCTA
1 TACAAATCATATCTA
52379034 AGATTGCATA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTATAAGAT
Found at i:52388133 original size:50 final size:50
Alignment explanation
Indices: 52388074--52388332 Score: 223
Period size: 50 Copynumber: 5.2 Consensus size: 50
52388064 GATCTGTAAT
*
52388074 CTTCAATCTATTCAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAG
1 CTTCAATCTATTCAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAG
* ** ** *** * * *
52388124 CTTCAATCTATTCCACCGCACCGTCAGGGAAGTAAGATCTGCCGTTGTGG
1 CTTCAATCTATTCAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAG
* * * * *
52388174 CTTCAATATTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCATAG
1 CTTCAATCTATTCAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAG
* * * * * *** * * *
52388224 CTTCAATCTGTTCCACTGCACTG-CTAAGGAAGTAAGATCCACCGTTGTGG
1 CTTCAATCTATTCAATTGCAATGTC-AGGGAAACCAGATCCGCCGTCGTAG
* * *
52388274 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAG
1 CTTCAATCTATTCAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAG
52388324 CTTCAATCT
1 CTTCAATCT
52388333 GTTCCACTGC
Statistics
Matches: 151, Mismatches: 56, Indels: 4
0.72 0.27 0.02
Matches are distributed among these distances:
49 1 0.01
50 149 0.99
51 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (50 bp):
CTTCAATCTATTCAATTGCAATGTCAGGGAAACCAGATCCGCCGTCGTAG
Found at i:52388225 original size:100 final size:100
Alignment explanation
Indices: 52388074--52388387 Score: 504
Period size: 100 Copynumber: 3.1 Consensus size: 100
52388064 GATCTGTAAT
* * * * *
52388074 CTTCAATCTATTCAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCA
1 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCA
* * * *
52388139 CCGCACCG-TCAGGGAAGTAAGATCTGCCGTTGTGG
66 CTGCACTGCT-AAGGAAGTAAGATCCGCCGTTGTGG
* *
52388174 CTTCAATATTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCATAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCA
*
52388239 CTGCACTGCTAAGGAAGTAAGATCCACCGTTGTGG
66 CTGCACTGCTAAGGAAGTAAGATCCGCCGTTGTGG
52388274 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCA
52388339 CTGCACTGCTAAGGAAGTAAGATCCGCCGTTGTGG
66 CTGCACTGCTAAGGAAGTAAGATCCGCCGTTGTGG
52388374 CTTCAATCTTTTTA
1 CTTCAATCTTTTTA
52388388 CTTTTCAACC
Statistics
Matches: 198, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
100 197 0.99
101 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (100 bp):
CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCA
CTGCACTGCTAAGGAAGTAAGATCCGCCGTTGTGG
Found at i:52388362 original size:50 final size:51
Alignment explanation
Indices: 52388108--52388382 Score: 218
Period size: 50 Copynumber: 5.5 Consensus size: 51
52388098 CGGGGAAACC
* * *
52388108 AGATCCGCCGTCGTAGCTTCAATCTATTCCACCGCACCG-TCAGGGAAGTA
1 AGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGATCAGGGAAGTA
* * * * * ** * * ***
52388158 AGATCTGCCGTTGTGGCTTCAATATTTTTAATTGCAAT-ATCAGGGAAACC
1 AGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGATCAGGGAAGTA
* * *
52388208 AGATCCGCCGTCATAGCTTCAATCTGTTCCACTGCACTGCT-AAGGAAGTA
1 AGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGATCAGGGAAGTA
* * * * ** * * ***
52388258 AGATCCACCGTTGTGGCTTCAATCTTTTTAATTGCAAT-ATCAGGGAAACC
1 AGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGATCAGGGAAGTA
* *
52388308 AGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGCT-AAGGAAGTA
1 AGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGATCAGGGAAGTA
* *
52388358 AGATCCGCCGTTGTGGCTTCAATCT
1 AGATCCGCCGTCGTAGCTTCAATCT
52388383 TTTTACTTTT
Statistics
Matches: 163, Mismatches: 58, Indels: 8
0.71 0.25 0.03
Matches are distributed among these distances:
49 1 0.01
50 160 0.98
51 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (51 bp):
AGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACTGATCAGGGAAGTA
Found at i:52400841 original size:7 final size:7
Alignment explanation
Indices: 52400815--52400891 Score: 51
Period size: 7 Copynumber: 11.6 Consensus size: 7
52400805 TATGTACACG
52400815 TAAATAA
1 TAAATAA
* *
52400822 TAATTGA
1 TAAATAA
52400829 -AAATAA
1 TAAATAA
52400835 TAAATAA
1 TAAATAA
52400842 T-AATAA
1 TAAATAA
52400848 -AAA-AA
1 TAAATAA
*
52400853 -AAGT-A
1 TAAATAA
52400858 TAATATAA
1 TAA-ATAA
52400866 T-AATAAA
1 TAAAT-AA
52400873 TAAATAA
1 TAAATAA
52400880 TAAAATAA
1 T-AAATAA
52400888 TAAA
1 TAAA
52400892 ATAGTTCAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 18
0.70 0.08 0.23
Matches are distributed among these distances:
5 5 0.09
6 15 0.27
7 23 0.42
8 12 0.22
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (7 bp):
TAAATAA
Found at i:52400860 original size:19 final size:18
Alignment explanation
Indices: 52400838--52400884 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
52400828 AAAATAATAA
52400838 ATAATAATAAAAAAAAAGT
1 ATAATAATAAAAAAAAA-T
* *
52400857 ATAAT-ATAATAATAAAT
1 ATAATAATAAAAAAAAAT
52400874 A-AATAATAAAA
1 ATAATAATAAAA
52400885 TAATAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 3 0.12
17 7 0.29
18 9 0.38
19 5 0.21
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (18 bp):
ATAATAATAAAAAAAAAT
Found at i:52400886 original size:19 final size:18
Alignment explanation
Indices: 52400815--52400891 Score: 88
Period size: 19 Copynumber: 4.2 Consensus size: 18
52400805 TATGTACACG
52400815 TAAATAATAATTGAAAATAA
1 TAAATAATAA-T-AAAATAA
52400835 TAAATAATAATAAAA-AA
1 TAAATAATAATAAAATAA
*
52400852 -AAAGT-ATAATATAATAA
1 TAAA-TAATAATAAAATAA
52400869 TAAATAAATAATAAAATAA
1 TAAAT-AATAATAAAATAA
52400888 TAAA
1 TAAA
52400892 ATAGTTCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 11
0.79 0.03 0.17
Matches are distributed among these distances:
16 11 0.22
17 6 0.12
18 7 0.14
19 16 0.32
20 10 0.20
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (18 bp):
TAAATAATAATAAAATAA
Found at i:52405212 original size:3 final size:3
Alignment explanation
Indices: 52405204--52405235 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
52405194 AGTAGCATTC
52405204 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
52405236 AAGCCCCTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:52414580 original size:57 final size:57
Alignment explanation
Indices: 52414519--52414636 Score: 218
Period size: 57 Copynumber: 2.1 Consensus size: 57
52414509 CCCTGCATAG
* *
52414519 TACTGGGTTGATTATGCATGAAAAAGATGTCTTAGTTTACCTACAAACATGAATGTT
1 TACTGGGTTGATTAAGCATGAAAAAGATGTCGTAGTTTACCTACAAACATGAATGTT
52414576 TACTGGGTTGATTAAGCATGAAAAAGATGTCGTAGTTTACCTACAAACATGAATGTT
1 TACTGGGTTGATTAAGCATGAAAAAGATGTCGTAGTTTACCTACAAACATGAATGTT
52414633 TACT
1 TACT
52414637 TAGGATTTAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (57 bp):
TACTGGGTTGATTAAGCATGAAAAAGATGTCGTAGTTTACCTACAAACATGAATGTT
Found at i:52424171 original size:29 final size:30
Alignment explanation
Indices: 52424125--52424182 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
52424115 ATTCAATGTA
52424125 GTACAATGTCATAAATG-AATTTTGATTTT
1 GTACAATGTCATAAATGAAATTTTGATTTT
* * * *
52424154 GTACAATTTTATACATGAAATTTTTATTT
1 GTACAATGTCATAAATGAAATTTTGATTT
52424183 GATTCAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.48
Consensus pattern (30 bp):
GTACAATGTCATAAATGAAATTTTGATTTT
Found at i:52424708 original size:22 final size:23
Alignment explanation
Indices: 52424683--52424738 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 23
52424673 ACTTTTTTAT
*
52424683 TTTTTTAGGGTT-AGGATTT-TTG
1 TTTTTTAGGGTTAAGG-TTTATAG
52424705 TTTTATTA-GGTTAAGGTTTATAG
1 TTTT-TTAGGGTTAAGGTTTATAG
52424728 -TTTTTAGGGTT
1 TTTTTTAGGGTT
52424739 TAGGGTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.10
22 18 0.62
23 8 0.28
ACGTcount: A:0.18, C:0.00, G:0.25, T:0.57
Consensus pattern (23 bp):
TTTTTTAGGGTTAAGGTTTATAG
Found at i:52424708 original size:23 final size:24
Alignment explanation
Indices: 52424667--52424714 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
52424657 TCTCTCCAAT
*
52424667 GTTAGGACTTTTTTATTTTTTTAGG
1 GTTAGGAC-TTTTTATTTTATTAGG
*
52424692 GTTAGGA-TTTTTGTTTTATTAGG
1 GTTAGGACTTTTTATTTTATTAGG
52424715 TTAAGGTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 14 0.67
25 7 0.33
ACGTcount: A:0.17, C:0.02, G:0.23, T:0.58
Consensus pattern (24 bp):
GTTAGGACTTTTTATTTTATTAGG
Found at i:52455753 original size:12 final size:12
Alignment explanation
Indices: 52455736--52455777 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
52455726 CAGTCGTTCA
52455736 TGCATTTGATCT
1 TGCATTTGATCT
** *
52455748 TGCATTTCCTTT
1 TGCATTTGATCT
52455760 TGCATTTGATCT
1 TGCATTTGATCT
52455772 TGCATT
1 TGCATT
52455778 GCTCCAACTT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.14, C:0.19, G:0.14, T:0.52
Consensus pattern (12 bp):
TGCATTTGATCT
Found at i:52457416 original size:12 final size:12
Alignment explanation
Indices: 52457399--52457424 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
52457389 CCTGCGTAAC
52457399 CCCCTTACTAAT
1 CCCCTTACTAAT
52457411 CCCCTTACTAAT
1 CCCCTTACTAAT
52457423 CC
1 CC
52457425 ATAGATACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.46, G:0.00, T:0.31
Consensus pattern (12 bp):
CCCCTTACTAAT
Found at i:52461689 original size:28 final size:28
Alignment explanation
Indices: 52461648--52461703 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
52461638 CCTCCTTCCC
* * *
52461648 CTCCACTGAGTCTTGTTGCTTTGATCCA
1 CTCCACTGACTCTTGTCGCTTCGATCCA
*
52461676 CTCCACTGCCTCTTGTCGCTTCGATCCA
1 CTCCACTGACTCTTGTCGCTTCGATCCA
52461704 TTTTATTGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.12, C:0.36, G:0.16, T:0.36
Consensus pattern (28 bp):
CTCCACTGACTCTTGTCGCTTCGATCCA
Found at i:52468202 original size:132 final size:132
Alignment explanation
Indices: 52468032--52469058 Score: 1651
Period size: 132 Copynumber: 7.8 Consensus size: 132
52468022 CACTGCAACT
* ** * * * *
52468032 TCAGGGAGATAAGATTTGGTGGCTTAAATTTGCTTCCCACCATCTTGGAAAGATAAAATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
* * *
52468097 TCTTCGATCTGCTCCGCTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCT
52468162 GC
131 GC
* * *
52468164 TCAAGGAGACAAGGTTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
* *
52468229 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCT
*
52468294 GA
131 GC
*
52468296 TCA-GGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
* * *
52468360 TCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCAGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCT
*
52468425 AC
131 GC
** * *
52468427 TCAGAAAGATAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTCGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
* *
52468492 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATATTCAACCTTCTCCGCAGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCT
52468557 GC
131 GC
* *
52468559 TCAGGGAGACAAGGCTTGATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
* * *
52468624 TCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCT
52468689 GC
131 GC
* *
52468691 TTAGGGAAACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
* * *
52468756 TCTTTGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTTCTCCGCTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCT
52468821 GC
131 GC
*
52468823 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
* * *
52468888 TCTTTGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCT
52468953 GC
131 GC
* *
52468955 TCAGGGAGACAAGGCTTGGTGGCTCAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
*
52469020 TCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATC
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
52469059 ACTGGTTATC
Statistics
Matches: 833, Mismatches: 61, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
131 123 0.15
132 710 0.85
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (132 bp):
TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCT
GC
Found at i:52468657 original size:44 final size:44
Alignment explanation
Indices: 52468082--52469057 Score: 299
Period size: 44 Copynumber: 22.2 Consensus size: 44
52468072 CATCTTGGAA
* * * *
52468082 AGATAAAATTTGCCGTCTTCGATCTGCTCCGCTACTGCTTAAGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * *
52468126 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAAGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
52468170 AGACAAGGTTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
*
52468214 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* **** * * * * *
52468258 AGATAAGATCTATAATCTTCAACCTTCTCCGCTACTGATCA-GG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * * * *
52468301 AGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * *
52468345 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* **** * * * * * **
52468389 AGATAAGATCTATAATCTTCAACCTTCTCCGC-AGCTACTCAGAA
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTA-CTGCTTAGGG
** ** * * **
52468433 AGATAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTTAGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGGG
* *
52468477 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * *
52468521 AGATAAGATCTACAATATTCAACCTTCTCCGC-AGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTA-CTGCTTAGGG
* ** ** * * *
52468565 AGACAAGGCTTGATGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
52468609 AGATAAGATTTGCCGTCTTCGATCTGCTCTACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * *
52468653 AGATAAGATCTACAATCTTCAACCTTCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** ** * * *
52468697 AAACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* ** *
52468741 AGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGA
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * *
52468785 AGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * * *
52468829 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
** *
52468873 AGATAAGATTTGCCGTCTTTGATCTGCTCTACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * *
52468917 AGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * *
52468961 AGACAAGGCTTGGTGGC-TCAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTC-AATCTGC-T-CCACTACTGCTTAGG-G
** * *
52469005 AGATAAGATTCACCGTCTTCGATCTGTTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
52469049 AGATAAGAT
1 AGATAAGAT
52469058 CACTGGTTAT
Statistics
Matches: 632, Mismatches: 253, Indels: 94
0.65 0.26 0.10
Matches are distributed among these distances:
42 40 0.06
43 45 0.07
44 488 0.77
45 31 0.05
46 26 0.04
47 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (44 bp):
AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:52495737 original size:40 final size:42
Alignment explanation
Indices: 52495673--52495750 Score: 106
Period size: 40 Copynumber: 1.9 Consensus size: 42
52495663 GATAAAGCAG
52495673 GAAAACGCTTTCTCAAGGAAGCGC-TT-TGTCCACGTGCACA
1 GAAAACGCTTTCTCAAGGAAGCGCTTTGTGTCCACGTGCACA
** **
52495713 GAAAACGCTTTCTTGAGGGCGCGCTTTGTGTCCACGTG
1 GAAAACGCTTTCTCAAGGAAGCGCTTTGTGTCCACGTG
52495751 GACAAAGCGC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 20 0.62
41 2 0.06
42 10 0.31
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.26
Consensus pattern (42 bp):
GAAAACGCTTTCTCAAGGAAGCGCTTTGTGTCCACGTGCACA
Found at i:52496400 original size:97 final size:97
Alignment explanation
Indices: 52496263--52496516 Score: 420
Period size: 97 Copynumber: 2.6 Consensus size: 97
52496253 ATTTAATTTT
* * *
52496263 AACCCCAATCTAATTTTTTAAAATTTATAATTAATTTACTCAAGTAATCCTAAATCCTAATTTAT
1 AACCCTAATCTAATTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTAT
*
52496328 TTGA-TTTTTTCCTTAAAAACCTTAAACACTA
66 TTGATTTTTTTCCTTAAAAACCATAAACACTA
52496359 AACCCTAATCTAATTTTTTAAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTA
1 AACCCTAATCTAATTTTTT-AAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTA
52496424 TTTGATTTTTTTCCTTAAAAACCATAAACACTA
65 TTTGATTTTTTTCCTTAAAAACCATAAACACTA
* * * *
52496457 AACCCTAATCTAATTTTTTAAAATTTATAATTAATTTAATTAAGAAACCCTAATCCCTAA
1 AACCCTAATCTAATTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAA
52496517 ACCCTTATTT
Statistics
Matches: 148, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
96 18 0.12
97 85 0.57
98 45 0.30
ACGTcount: A:0.40, C:0.18, G:0.02, T:0.40
Consensus pattern (97 bp):
AACCCTAATCTAATTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTAT
TTGATTTTTTTCCTTAAAAACCATAAACACTA
Found at i:52500896 original size:22 final size:21
Alignment explanation
Indices: 52500870--52500910 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
52500860 TTGCAACGTA
52500870 AATGCATAATATTTCAGAAATC
1 AATGCATAAT-TTTCAGAAATC
* *
52500892 AATGCGTAGTTTTCAGAAA
1 AATGCATAATTTTCAGAAA
52500911 ATGTTCCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (21 bp):
AATGCATAATTTTCAGAAATC
Found at i:52501071 original size:21 final size:21
Alignment explanation
Indices: 52501047--52501099 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
52501037 TGGTCAAGCC
* *
52501047 ACCAAAATTTGTAGATATACT
1 ACCAAAATATGTAGATAAACT
*
52501068 ACCAGAAA-ATGTAGTTAAACT
1 ACCA-AAATATGTAGATAAACT
52501089 ACCAAAATATG
1 ACCAAAATATG
52501100 CAAATTATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 3 0.11
21 21 0.78
22 3 0.11
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.26
Consensus pattern (21 bp):
ACCAAAATATGTAGATAAACT
Found at i:52508352 original size:40 final size:42
Alignment explanation
Indices: 52508293--52508374 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
52508283 ATAACAAGAA
** *
52508293 AATCAATTTT-TTTTTAAAAAA-CTCTATAATAATTCTTTAT
1 AATCAATTTTGTTTAAAAAAAAGCTCTACAATAATTCTTTAT
52508333 AATCAATTTTGTTTAAAAAAAAGCTCTACAATAATTCTTTAT
1 AATCAATTTTGTTTAAAAAAAAGCTCTACAATAATTCTTTAT
52508375 CTTTGTAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 10 0.27
41 9 0.24
42 18 0.49
ACGTcount: A:0.41, C:0.11, G:0.02, T:0.45
Consensus pattern (42 bp):
AATCAATTTTGTTTAAAAAAAAGCTCTACAATAATTCTTTAT
Found at i:52508503 original size:17 final size:17
Alignment explanation
Indices: 52508483--52508536 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
52508473 ATAATTAAAT
52508483 CTATTAAATAGATATAA
1 CTATTAAATAGATATAA
52508500 CTATTAAAGTA-ATAT--
1 CTATTAAA-TAGATATAA
*
52508515 CTCTTAAATAGATATAA
1 CTATTAAATAGATATAA
52508532 CTATT
1 CTATT
52508537 CAAGTAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
14 2 0.06
15 11 0.35
17 16 0.52
18 2 0.06
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.39
Consensus pattern (17 bp):
CTATTAAATAGATATAA
Found at i:52508522 original size:32 final size:32
Alignment explanation
Indices: 52508481--52508550 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
52508471 GAATAATTAA
52508481 ATCTATTAAATAGATATAACTATTAAAGTAAT
1 ATCTATTAAATAGATATAACTATTAAAGTAAT
* *
52508513 ATCTCTTAAATAGATATAACTATTCAAGTAAT
1 ATCTATTAAATAGATATAACTATTAAAGTAAT
52508545 AT-TATT
1 ATCTATT
52508551 TGAATAGTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
31 3 0.09
32 32 0.91
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.40
Consensus pattern (32 bp):
ATCTATTAAATAGATATAACTATTAAAGTAAT
Found at i:52508529 original size:15 final size:15
Alignment explanation
Indices: 52508481--52508529 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
52508471 GAATAATTAA
52508481 ATCTATTAAATAGAT
1 ATCTATTAAATAGAT
52508496 ATAACTATTAAAGTA-AT
1 AT--CTATTAAA-TAGAT
*
52508513 ATCTCTTAAATAGAT
1 ATCTATTAAATAGAT
52508528 AT
1 AT
52508530 AACTATTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
14 2 0.07
15 13 0.45
17 12 0.41
18 2 0.07
ACGTcount: A:0.47, C:0.08, G:0.06, T:0.39
Consensus pattern (15 bp):
ATCTATTAAATAGAT
Found at i:52509293 original size:24 final size:24
Alignment explanation
Indices: 52509231--52509282 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
52509221 TTTCTAGAAG
* **
52509231 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAACATAATAT
52509255 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATTAACATAATAT
52509279 ATTT
1 ATTT
52509283 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (24 bp):
ATTTAGCATTTATTAACATAATAT
Found at i:52512797 original size:196 final size:195
Alignment explanation
Indices: 52512463--52513048 Score: 958
Period size: 196 Copynumber: 3.0 Consensus size: 195
52512453 GACTTTTCAT
*
52512463 GATTTGGGACCAGTAAATAAGATACTTGGTATGGAGATTCTCAGAGATACAAAAGCAAGTAAATT
1 GATTTGGGACCAGTAAATAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGCAAGTAAATT
*
52512528 GTACCTAAGTAAGAAGGGGTACATTGAGAAAGTTCTTTACAGGTTCAATATGCAGAGTGCTAAGC
66 GTACCTAAGTAAGAAGGGGTACATTGAGAAAGTTCTTTGCA-GTTCAATATGCAGAGTGCTAAGC
* * *
52512593 CTGTTAGTATTCCCTTAGCAGCCCATTTCAGACTTTCATCGGCTTTGTCTCCACGATCAGATGAA
130 CTGTTAGTACTCCTTTAGCAGCCCATTTCAGACTTTCATCGGCTTTGTCTCCACAATCAGATGAA
52512658 A
195 A
* * *
52512659 GATTTGGGACCAGCAACTAAGATACTTGGTATGGAGATTCTTAGAGATAGAAAAGCAAGTAAATT
1 GATTTGGGACCAGTAAATAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGCAAGTAAATT
*
52512724 GTACCTAAGTTAGAAGGGGTACATTGAGAAAGTTCTTTGCAGATTCAATATGCAGAGTGCTAAGC
66 GTACCTAAGTAAGAAGGGGTACATTGAGAAAGTTCTTTGCAG-TTCAATATGCAGAGTGCTAAGC
*
52512789 CTGTTAGTACTCCTTTAGCAGCCCATTTCAGACTTTCATCAGCTTTGTCTCCACAATCAGATGAA
130 CTGTTAGTACTCCTTTAGCAGCCCATTTCAGACTTTCATCGGCTTTGTCTCCACAATCAGATGAA
52512854 A
195 A
* * *
52512855 GATTTGGGACCAGTAAAGAAGATATTTGGTATGAAGATTCTCAGAGATAGAAAAGCAAGTAAATT
1 GATTTGGGACCAGTAAATAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGCAAGTAAATT
* * *
52512920 GTACCCAAGTCAGAACGGGTACATTGAGAAAGTTCTTTGCATGTTCAATATGCAG-GATGCTAAG
66 GTACCTAAGTAAGAAGGGGTACATTGAGAAAGTTCTTTGCA-GTTCAATATGCAGAG-TGCTAAG
* * *
52512984 CCTGTTAGTACTCCTTTAGCAGCCTATTTTAGACTTTCATCGGCTTTGTCTCCACAACCAGATGA
129 CCTGTTAGTACTCCTTTAGCAGCCCATTTCAGACTTTCATCGGCTTTGTCTCCACAATCAGATGA
52513049 TGAGATTGAG
Statistics
Matches: 364, Mismatches: 23, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
195 2 0.01
196 361 0.99
197 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (195 bp):
GATTTGGGACCAGTAAATAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGCAAGTAAATT
GTACCTAAGTAAGAAGGGGTACATTGAGAAAGTTCTTTGCAGTTCAATATGCAGAGTGCTAAGCC
TGTTAGTACTCCTTTAGCAGCCCATTTCAGACTTTCATCGGCTTTGTCTCCACAATCAGATGAAA
Done.