Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 23 of 198
Found at i:6816177 original size:25 final size:24
Alignment explanation
Indices: 6816139--6816186 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
6816129 ATCCGAGTAA
6816139 TATAACGAGAAGCTCACAAAGAGCC
1 TATAACGAGAAGCTC-CAAAGAGCC
* * *
6816164 TATAACGGGTAGCTCTAAAGAGC
1 TATAACGAGAAGCTCCAAAGAGC
6816187 AATTAACAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.17
Consensus pattern (24 bp):
TATAACGAGAAGCTCCAAAGAGCC
Found at i:6816808 original size:21 final size:21
Alignment explanation
Indices: 6816784--6816825 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6816774 AAATTTAACA
* *
6816784 TCAATTTAATACAATTCACAT
1 TCAATTCAATACAAGTCACAT
*
6816805 TCAATTCAATCCAAGTCACAT
1 TCAATTCAATACAAGTCACAT
6816826 CTTAGGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.24, G:0.02, T:0.33
Consensus pattern (21 bp):
TCAATTCAATACAAGTCACAT
Found at i:6824693 original size:24 final size:24
Alignment explanation
Indices: 6824649--6824694 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
6824639 GAGTGATACC
**
6824649 AATATAGTAAAATATTTTATAAGT
1 AATATAGTAAAATATACTATAAGT
6824673 AATATAGATAAAAT-TACTATAA
1 AATATAG-TAAAATATACTATAA
6824695 AATATGAGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 13 0.68
25 6 0.32
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (24 bp):
AATATAGTAAAATATACTATAAGT
Found at i:6830786 original size:21 final size:20
Alignment explanation
Indices: 6830745--6830788 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
6830735 CAATACCACC
* **
6830745 TATAAAAAATAATATTTTAA
1 TATAAAAAATAAAATAATAA
6830765 TATAAATAAATAAAATAATAA
1 TATAAA-AAATAAAATAATAA
6830786 TAT
1 TAT
6830789 TTTATTTTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
TATAAAAAATAAAATAATAA
Found at i:6831543 original size:24 final size:24
Alignment explanation
Indices: 6831526--6831577 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
6831516 TTATTATTTT
6831526 AAATATTCAAAAATTTATAATTATA
1 AAATATT-AAAAATTTATAATTATA
* * *
6831551 AAATATTAAAAATATAAAATTAGA
1 AAATATTAAAAATTTATAATTATA
6831575 AAA
1 AAA
6831578 ACAAAACAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATATTAAAAATTTATAATTATA
Found at i:6831756 original size:16 final size:17
Alignment explanation
Indices: 6831720--6831757 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
6831710 TATAAAATAT
6831720 TAAAAAAATTATGAAAC
1 TAAAAAAATTATGAAAC
* *
6831737 TAAAAGAATTATTAAA-
1 TAAAAAAATTATGAAAC
6831753 TAAAA
1 TAAAA
6831758 TAAAATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (17 bp):
TAAAAAAATTATGAAAC
Found at i:6831778 original size:22 final size:21
Alignment explanation
Indices: 6831752--6831807 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
6831742 GAATTATTAA
6831752 ATAAAATA-AAATTATAAAAACT
1 ATAAAATATAAA-TAT-AAAACT
6831774 ATAAAATATAAATATAAAACT
1 ATAAAATATAAATATAAAACT
*
6831795 AAAAACATATAAA
1 ATAAA-ATATAAA
6831808 ATTTTGTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 10 0.32
22 18 0.58
23 3 0.10
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
ATAAAATATAAATATAAAACT
Found at i:6831784 original size:29 final size:29
Alignment explanation
Indices: 6831752--6831809 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
6831742 GAATTATTAA
6831752 ATAAA-ATAAAATTATAAAAAC-TATAAAAT
1 ATAAATATAAAA--ATAAAAACATATAAAAT
*
6831781 ATAAATATAAAACTAAAAACATATAAAAT
1 ATAAATATAAAAATAAAAACATATAAAAT
6831810 TTTGTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 7 0.27
29 13 0.50
30 6 0.23
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (29 bp):
ATAAATATAAAAATAAAAACATATAAAAT
Found at i:6834259 original size:14 final size:14
Alignment explanation
Indices: 6834240--6834270 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
6834230 TGATTGATTT
*
6834240 TAATCTAAATTTAC
1 TAATCTAAATTAAC
6834254 TAATCTAAATTAAC
1 TAATCTAAATTAAC
6834268 TAA
1 TAA
6834271 GAACTCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:6838574 original size:9 final size:10
Alignment explanation
Indices: 6838554--6838582 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
6838544 AATGAGAATT
6838554 AATAATAAAA
1 AATAATAAAA
6838564 AATAA-AAAA
1 AATAATAAAA
6838573 AATAATAAAA
1 AATAATAAAA
6838583 CCATAAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (10 bp):
AATAATAAAA
Found at i:6838724 original size:3 final size:3
Alignment explanation
Indices: 6838718--6838787 Score: 113
Period size: 3 Copynumber: 23.3 Consensus size: 3
6838708 AAAAAAAATG
* *
6838718 ATA ATA ATA ATA ATA ATA ATG ATA ATA ATG ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
6838766 ATA AGA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
6838788 CAAAAGGAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:6841914 original size:33 final size:33
Alignment explanation
Indices: 6841863--6842146 Score: 190
Period size: 33 Copynumber: 7.7 Consensus size: 33
6841853 TATCCGTTAC
* *
6841863 TCGGTGGATTCAGCACTTAGCAACCACCAGTGAT
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
*
6841897 TCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAAGAT
1 TCGGGGAATCAGCACTTAGCAACCAC---CA-A--T---GAT
* *
6841939 ACGGTGGAATTAGCACTTAGCAACCACCAATGAT
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
* *
6841973 TCGGGGAATCAGCACTTAGCAACCTCTTTCACATTTAAGT
1 TCGGGGAATCAGCACTTAGCAACCAC---CA-A--TGA-T
*
6842013 TACGGTGGAATTAGCACTTAGCAACCACCAATGAT
1 T-CGG-GGAATCAGCACTTAGCAACCACCAATGAT
* * *
6842048 TCGGGGAATCAACACTTAGCAACCCCTTTCACATTCAAGT
1 TCGGGGAATCAGCACTTAGCAACCAC---CA-A-T-GA-T
* *
6842088 TACAGTGGAATCAGCACTTAGCAACCAACAATGAT
1 T-C-GGGGAATCAGCACTTAGCAACCACCAATGAT
6842123 TCGGGGAATCAGCACTTAGCAACC
1 TCGGGGAATCAGCACTTAGCAACC
6842147 CCTTGGGGGA
Statistics
Matches: 199, Mismatches: 23, Indels: 57
0.71 0.08 0.20
Matches are distributed among these distances:
33 80 0.40
34 14 0.07
35 4 0.02
36 9 0.05
37 4 0.02
38 3 0.02
39 9 0.05
40 6 0.03
41 4 0.02
42 46 0.23
43 20 0.10
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.24
Consensus pattern (33 bp):
TCGGGGAATCAGCACTTAGCAACCACCAATGAT
Found at i:6842029 original size:42 final size:42
Alignment explanation
Indices: 6841977--6842114 Score: 150
Period size: 42 Copynumber: 3.5 Consensus size: 42
6841967 AATGATTCGG
*
6841977 GGAATCAGCACTTAGCAACCTCTTTCACATTTAAGTTACGGT
1 GGAATCAGCACTTAGCAACCACTTTCACATTTAAGTTACGGT
* *
6842019 GGAATTAGCACTTAGCAACCAC---CA-A--TGA-TT-CGG-
1 GGAATCAGCACTTAGCAACCACTTTCACATTTAAGTTACGGT
* * * *
6842052 GGAATCAACACTTAGCAACCCCTTTCACATTCAAGTTACAGT
1 GGAATCAGCACTTAGCAACCACTTTCACATTTAAGTTACGGT
6842094 GGAATCAGCACTTAGCAACCA
1 GGAATCAGCACTTAGCAACCA
6842115 ACAATGATTC
Statistics
Matches: 76, Mismatches: 11, Indels: 18
0.72 0.10 0.17
Matches are distributed among these distances:
33 19 0.25
34 3 0.04
35 2 0.03
36 4 0.05
37 1 0.01
38 1 0.01
39 3 0.04
40 2 0.03
41 2 0.03
42 39 0.51
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCACTTTCACATTTAAGTTACGGT
Found at i:6842053 original size:75 final size:75
Alignment explanation
Indices: 6841864--6842150 Score: 477
Period size: 75 Copynumber: 3.8 Consensus size: 75
6841854 ATCCGTTACT
*
6841864 CGGTGG-ATTCAGCACTTAGCAACCACCAGTGATTCGGGGAATCAGCACTTAGCAACCCCTTTCA
1 CGGTGGAATT-AGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCA
*
6841928 CATTTAAAGATA
65 CATTT-AAGTTA
*
6841940 CGGTGGAATTAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCTCTTTCAC
1 CGGTGGAATTAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
6842005 ATTTAAGTTA
66 ATTTAAGTTA
*
6842015 CGGTGGAATTAGCACTTAGCAACCACCAATGATTCGGGGAATCAACACTTAGCAACCCCTTTCAC
1 CGGTGGAATTAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
*
6842080 ATTCAAGTTA
66 ATTTAAGTTA
* * *
6842090 CAGTGGAATCAGCACTTAGCAACCAACAATGATTCGGGGAATCAGCACTTAGCAACCCCTT
1 CGGTGGAATTAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTT
6842151 GGGGGAATCA
Statistics
Matches: 200, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
75 134 0.67
76 63 0.31
77 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (75 bp):
CGGTGGAATTAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
ATTTAAGTTA
Found at i:6842803 original size:11 final size:12
Alignment explanation
Indices: 6842775--6842807 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
6842765 GCCCAAACTT
6842775 CAAAATTTTCGAA
1 CAAAATTTTC-AA
6842788 CAAAATTTTC-A
1 CAAAATTTTCAA
6842799 CAAAATTTT
1 CAAAATTTT
6842808 TCCGTGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.50
13 10 0.50
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.36
Consensus pattern (12 bp):
CAAAATTTTCAA
Found at i:6845427 original size:14 final size:14
Alignment explanation
Indices: 6845408--6845438 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
6845398 TGATTGATTT
*
6845408 TAATCTAAATTTAC
1 TAATCTAAATTAAC
6845422 TAATCTAAATTAAC
1 TAATCTAAATTAAC
6845436 TAA
1 TAA
6845439 GAACGCAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:6846176 original size:40 final size:40
Alignment explanation
Indices: 6846121--6846201 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
6846111 GTTCTTCGAG
* * *
6846121 TAACTTCTTCAATCTTCTTTGTGTTCTCCATTAGATCTTT
1 TAACTTCTTCAATCTTCTCTGTGTGCTCCATTAGATATTT
*
6846161 TAACTTCTTCAATCTTCTCTGTGTGCTCCCTTAGATATTT
1 TAACTTCTTCAATCTTCTCTGTGTGCTCCATTAGATATTT
6846201 T
1 T
6846202 TCTAATTGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.17, C:0.23, G:0.09, T:0.51
Consensus pattern (40 bp):
TAACTTCTTCAATCTTCTCTGTGTGCTCCATTAGATATTT
Found at i:6847913 original size:37 final size:37
Alignment explanation
Indices: 6847872--6847949 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
6847862 AACTAAAATT
6847872 AAAATTAAATCAATCAATTCTATTAAAAATGAACCAA
1 AAAATTAAATCAATCAATTCTATTAAAAATGAACCAA
6847909 AAAATTAAATCAATCAATTCTATTAAAAATGAACCAA
1 AAAATTAAATCAATCAATTCTATTAAAAATGAACCAA
6847946 AAAA
1 AAAA
6847950 ATTATCTCCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.59, C:0.13, G:0.03, T:0.26
Consensus pattern (37 bp):
AAAATTAAATCAATCAATTCTATTAAAAATGAACCAA
Found at i:6849073 original size:11 final size:11
Alignment explanation
Indices: 6849057--6849091 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
6849047 AACAAAAGGT
6849057 TATAAAATAAA
1 TATAAAATAAA
6849068 TATAAAATAAA
1 TATAAAATAAA
* *
6849079 AACAAAATAAA
1 TATAAAATAAA
6849090 TA
1 TA
6849092 AAAGATGGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (11 bp):
TATAAAATAAA
Found at i:6854786 original size:16 final size:16
Alignment explanation
Indices: 6854767--6854797 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
6854757 GTTAAAAATA
6854767 ATATAACTTTTATAAT
1 ATATAACTTTTATAAT
6854783 ATATAACTTTTATAA
1 ATATAACTTTTATAA
6854798 AAAAAATTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATAACTTTTATAAT
Found at i:6858047 original size:9 final size:9
Alignment explanation
Indices: 6858033--6858063 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
6858023 GTTAAACGAA
6858033 TCGAGTTAT
1 TCGAGTTAT
*
6858042 TCGAGTTAA
1 TCGAGTTAT
6858051 TCGAGTTAT
1 TCGAGTTAT
6858060 TCGA
1 TCGA
6858064 ATTAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:6858054 original size:18 final size:18
Alignment explanation
Indices: 6858031--6858073 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
6858021 GAGTTAAACG
*
6858031 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAATT
6858049 AATCGAGTTATTCGAATT
1 AATCGAGTTATTCGAATT
6858067 AACTCGA
1 AA-TCGA
6858074 ATTTTTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.35
Consensus pattern (18 bp):
AATCGAGTTATTCGAATT
Found at i:6861324 original size:6 final size:6
Alignment explanation
Indices: 6861287--6861341 Score: 74
Period size: 6 Copynumber: 8.8 Consensus size: 6
6861277 CCAAACACAC
* *
6861287 CAGTAAA CAGTAA TCAGTAA CGGTAG CAGTAA CAGTAA CAGTAA CAGTAA
1 CAGT-AA CAGTAA -CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA
6861337 CAGTA
1 CAGTA
6861342 TTCAACACAC
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
6 33 0.77
7 10 0.23
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.18
Consensus pattern (6 bp):
CAGTAA
Found at i:6861372 original size:45 final size:45
Alignment explanation
Indices: 6861321--6861470 Score: 223
Period size: 45 Copynumber: 3.3 Consensus size: 45
6861311 AGCAGTAACA
*
6861321 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCT
1 GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCT
*
6861366 GTAACAGTAACGGTAACAGTATTCGACACACAAAGTG-TCGAAT-T
1 GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCT-GAATCT
* * *
6861410 GGTAACAGTAACAGTAACGGTATTCGACACACAAAGTGCCGAATCA
1 -GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCT
6861456 GTAACAGTAACAGTA
1 GTAACAGTAACAGTA
6861471 GTCGACACAT
Statistics
Matches: 95, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
44 2 0.02
45 93 0.98
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCT
Found at i:6861846 original size:28 final size:31
Alignment explanation
Indices: 6861788--6861846 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 31
6861778 ATATATAGTT
6861788 TTTATATTATTTATAAAGGTTATAATAATAA
1 TTTATATTATTTATAAAGGTTATAATAATAA
* *
6861819 TTTATA-TA-TTAT-AATGTTATTATAATAA
1 TTTATATTATTTATAAAGGTTATAATAATAA
6861847 AAACAAAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 14 0.54
29 4 0.15
30 2 0.08
31 6 0.23
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (31 bp):
TTTATATTATTTATAAAGGTTATAATAATAA
Found at i:6862839 original size:41 final size:43
Alignment explanation
Indices: 6862726--6862858 Score: 157
Period size: 45 Copynumber: 3.0 Consensus size: 43
6862716 AGGATTTCCG
*
6862726 ATATGTGTTCTCGTGTAAGACCAC-GTCTGGGACGATGGCATCGAT
1 ATATGTGAT-TCGTGTAAGACC-CTGTCTGGGAC-ATGGCATCGAT
* *
6862771 ATATGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATC-AT
1 ATATGTGATT-CGTGTAAGACCCTGTCTGGGACA-TGGCATCGAT
6862815 AT-T-TGATTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGAT
1 ATATGTGATTCGTGTAAGACCCTGTCTGGGACA-TGGCATCGAT
6862857 AT
1 AT
6862859 GAGATAGCAT
Statistics
Matches: 78, Mismatches: 6, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
41 28 0.36
42 9 0.12
43 1 0.01
44 6 0.08
45 34 0.44
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
ATATGTGATTCGTGTAAGACCCTGTCTGGGACATGGCATCGAT
Found at i:6865830 original size:3 final size:3
Alignment explanation
Indices: 6865806--6865847 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
6865796 GATTCACATA
*
6865806 ATT ATTT ATT TTT ATT -TT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6865848 TTTCAATTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
ATT
Found at i:6867022 original size:25 final size:22
Alignment explanation
Indices: 6866965--6867023 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 22
6866955 TTAATTTTTT
6866965 AATAATAATAATTTTAATATAA
1 AATAATAATAATTTTAATATAA
**
6866987 AACCATAATAATATTTATATATAA
1 AATAATAATAAT-TTTA-ATATAA
*
6867011 TATAATATATAAT
1 AATAATA-ATAAT
6867024 CAAAGAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
22 10 0.34
23 4 0.14
24 10 0.34
25 5 0.17
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (22 bp):
AATAATAATAATTTTAATATAA
Found at i:6867623 original size:17 final size:17
Alignment explanation
Indices: 6867587--6867639 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
6867577 TTCAATCAAC
*
6867587 ATTAATAAATAATTTA-A
1 ATTAAT-AATTATTTATA
6867604 ATTAATAATTATTTATA
1 ATTAATAATTATTTATA
* * *
6867621 ATTTATATTTATCTATA
1 ATTAATAATTATTTATA
6867638 AT
1 AT
6867640 GCATAGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
16 8 0.26
17 23 0.74
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTAATAATTATTTATA
Found at i:6869514 original size:2 final size:2
Alignment explanation
Indices: 6869507--6869534 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6869497 TGCTAGTGAC
6869507 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
6869535 CCGAGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:6880189 original size:2 final size:2
Alignment explanation
Indices: 6880177--6880206 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
6880167 ATATTACAAA
6880177 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT A
6880207 ATTTGCATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6886860 original size:20 final size:20
Alignment explanation
Indices: 6886835--6886875 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
6886825 TAATCCTATC
6886835 CCATTTCCATTCTGGGATCT
1 CCATTTCCATTCTGGGATCT
*
6886855 CCATTTCCATTTTGGGATCT
1 CCATTTCCATTCTGGGATCT
6886875 C
1 C
6886876 TAATAAGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.41
Consensus pattern (20 bp):
CCATTTCCATTCTGGGATCT
Found at i:6895853 original size:27 final size:26
Alignment explanation
Indices: 6895823--6895882 Score: 61
Period size: 25 Copynumber: 2.3 Consensus size: 26
6895813 TGTTTAAATT
6895823 TTAATGAATAATAATGTTAGTTATAT-C
1 TTAATGAATAATAATG-T-GTTATATGC
* *
6895850 TTAAATG-ATTATTATGTGTTATATGC
1 TT-AATGAATAATAATGTGTTATATGC
6895876 TTAATGA
1 TTAATGA
6895883 GATTAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
25 11 0.39
26 4 0.14
27 9 0.32
28 4 0.14
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (26 bp):
TTAATGAATAATAATGTGTTATATGC
Found at i:6896220 original size:26 final size:26
Alignment explanation
Indices: 6896154--6896220 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
6896144 CATCCCAACC
*
6896154 CACAGCTCGTGTGACCAAGCCCATTT
1 CACAGCTCGTGTGAGCAAGCCCATTT
*
6896180 CACTGCTCGTGTGAGCAAGCCCATTT
1 CACAGCTCGTGTGAGCAAGCCCATTT
*
6896206 CACAGCTTGTGTGAG
1 CACAGCTCGTGTGAG
6896221 TATTACAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.25
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAAGCCCATTT
Found at i:6899035 original size:6 final size:6
Alignment explanation
Indices: 6898991--6899022 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
6898981 GTCTACCTGC
6898991 AAAATA AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AA
6899023 TTAAAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:6908738 original size:50 final size:50
Alignment explanation
Indices: 6908631--6908871 Score: 277
Period size: 50 Copynumber: 4.7 Consensus size: 50
6908621 CATGCCAAAA
* ** * * *
6908631 CCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCGGTGCCCATT
1 CCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCATTTCGGTGCCAATG
* *
6908682 CCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATTTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATTTCGGTGCCAATG
* * * *
6908732 ACATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATTTCGGTGCCAATG
6908782 CCATGTCCCAGACATGGTCTT-CTAGGGGACCTCTCATGATCTCAAGGATGCCAATG
1 CCATGTCCCAGACATGGTCTTAC-AGGGGACCTCTCAT--T-TC--GG-TGCCAATG
* *
6908838 CCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCT
6908872 TTACCCAAAT
Statistics
Matches: 162, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
49 1 0.01
50 92 0.57
51 27 0.17
53 2 0.01
55 2 0.01
56 37 0.23
57 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATTTCGGTGCCAATG
Found at i:6908798 original size:100 final size:104
Alignment explanation
Indices: 6908632--6908871 Score: 337
Period size: 100 Copynumber: 2.3 Consensus size: 104
6908622 ATGCCAAAAC
** * *
6908632 CATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCGGTGCCCATTCCATGTCCCAGACAT
1 CATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCCATGCCATGTCCCAGACAT
*
6908697 GGTCTTAC-GGGGGACCTCTCAT-T-TC-GG-TGCCAACGA
65 GGTCTT-CTAGGGGACCTCTCATATCTCAGGATGCCAACGA
6908733 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCATGCCATGTCCCAGACATG
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCATGCCATGTCCCAGACATG
* *
6908798 GTCTTCTAGGGGACCTCTCATGATCTCAAGGATGCCAATGC
66 GTCTTCTAGGGGACCTCTCAT-ATCTC-AGGATGCCAACGA
*
6908839 CATGTCCCAGACATGGTCTTACATGGGATCTCT
1 CATGTCCCAGACATGGTCTTACATGGGACCTCT
6908872 TTACCCAAAT
Statistics
Matches: 124, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
99 1 0.01
100 51 0.41
101 28 0.23
102 1 0.01
103 2 0.02
105 2 0.02
106 39 0.31
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (104 bp):
CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCATGCCATGTCCCAGACATG
GTCTTCTAGGGGACCTCTCATATCTCAGGATGCCAACGA
Found at i:6912045 original size:25 final size:27
Alignment explanation
Indices: 6912015--6912082 Score: 97
Period size: 25 Copynumber: 2.6 Consensus size: 27
6912005 AAAATTGGTA
6912015 AGACATTTTCCATTCT-TCTCTAAGCA-
1 AGACATTTTCCATTCTCT-TCTAAGCAC
6912041 A-ACATTTTCCATTCTCTTCTAAGCAGC
1 AGACATTTTCCATTCTCTTCTAAGCA-C
6912068 AGACATTTTCCATTC
1 AGACATTTTCCATTC
6912083 CTCAAAGCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
25 22 0.58
26 2 0.05
27 1 0.03
28 13 0.34
ACGTcount: A:0.26, C:0.28, G:0.07, T:0.38
Consensus pattern (27 bp):
AGACATTTTCCATTCTCTTCTAAGCAC
Found at i:6913548 original size:71 final size:72
Alignment explanation
Indices: 6913426--6913568 Score: 252
Period size: 71 Copynumber: 2.0 Consensus size: 72
6913416 TTGATACATT
* *
6913426 TATGTGGTGTAATATTATGCACTTGGACAATGTTCTTTCTATGTGGTGTACCATTAATTATGTAT
1 TATGTGGTGTAATATTATGCACTTAGACAATGTTCTTACTATGTGGTGTACCATTAATTATGTAT
6913491 TTGGATA
66 TTGGATA
*
6913498 TATGTGGTGTAATATTATGCAC-TAGACAATGTTGTTACTATGTGGTGTACCATTAATTATGTAT
1 TATGTGGTGTAATATTATGCACTTAGACAATGTTCTTACTATGTGGTGTACCATTAATTATGTAT
6913562 TTGGATA
66 TTGGATA
6913569 ATATTATTAT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
71 46 0.68
72 22 0.32
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (72 bp):
TATGTGGTGTAATATTATGCACTTAGACAATGTTCTTACTATGTGGTGTACCATTAATTATGTAT
TTGGATA
Found at i:6913780 original size:14 final size:14
Alignment explanation
Indices: 6913761--6913788 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6913751 ACAATTTACT
6913761 AATATATATTAATA
1 AATATATATTAATA
6913775 AATATATATTAATA
1 AATATATATTAATA
6913789 TATGTAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATATATATTAATA
Found at i:6913862 original size:32 final size:33
Alignment explanation
Indices: 6913821--6913905 Score: 93
Period size: 32 Copynumber: 2.6 Consensus size: 33
6913811 AACTTTTCCG
* * *
6913821 GAAAATATTTT-CAGGAAATCTGCCAAACAGCA
1 GAAAATATTTTACAGCAAATCTACCAAACACCA
* *
6913853 GAAAATATTTTACA-CAGATTTACCAAACACCA
1 GAAAATATTTTACAGCAAATCTACCAAACACCA
* *
6913885 GAAAATATTTTCCAGTAAATC
1 GAAAATATTTTACAGCAAATC
6913906 ATTTTACAGA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
32 37 0.88
33 5 0.12
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.26
Consensus pattern (33 bp):
GAAAATATTTTACAGCAAATCTACCAAACACCA
Found at i:6913904 original size:14 final size:15
Alignment explanation
Indices: 6913882--6913958 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
6913872 TTACCAAACA
6913882 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
6913896 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
6913911 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
6913931 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
6913945 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
6913959 ACTGCCAAAC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:6913923 original size:20 final size:20
Alignment explanation
Indices: 6913898--6913937 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
6913888 AATATTTTCC
*
6913898 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
6913918 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
6913938 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:6913943 original size:34 final size:35
Alignment explanation
Indices: 6913886--6913952 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
6913876 CAAACACCAG
*
6913886 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
6913921 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
6913953 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:6913959 original size:14 final size:14
Alignment explanation
Indices: 6913921--6913960 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
6913911 ACAGAAAAGT
*
6913921 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
6913935 AAATCATTTTACGG
1 AAAACATTTTACAG
6913949 AAAACATTTTAC
1 AAAACATTTTAC
6913961 TGCCAAACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:6915131 original size:13 final size:13
Alignment explanation
Indices: 6915113--6915141 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
6915103 GCCCAAACTT
6915113 AATTACCCAACCC
1 AATTACCCAACCC
6915126 AATTACCCAACCC
1 AATTACCCAACCC
6915139 AAT
1 AAT
6915142 AAAACTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.17
Consensus pattern (13 bp):
AATTACCCAACCC
Found at i:6915297 original size:9 final size:9
Alignment explanation
Indices: 6915285--6915349 Score: 78
Period size: 9 Copynumber: 7.1 Consensus size: 9
6915275 TAAAAAAAAA
6915285 TCGGGTAAT
1 TCGGGTAAT
*
6915294 TCGGGTATTTT
1 TCGGGTA--AT
6915305 TC-GGTAAT
1 TCGGGTAAT
*
6915313 TCGGTTAAT
1 TCGGGTAAT
*
6915322 TCGGTTAAT
1 TCGGGTAAT
6915331 TCGGGTAAT
1 TCGGGTAAT
6915340 TCGGGTAAT
1 TCGGGTAAT
6915349 T
1 T
6915350 TTTAACCAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
8 3 0.06
9 39 0.80
10 4 0.08
11 3 0.06
ACGTcount: A:0.20, C:0.11, G:0.28, T:0.42
Consensus pattern (9 bp):
TCGGGTAAT
Found at i:6925037 original size:22 final size:22
Alignment explanation
Indices: 6925009--6925061 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
6924999 GAATTGGCAA
6925009 TGGAGCAAGTTT-TCTCCCTAAT
1 TGGAGCAAGTTTGT-TCCCTAAT
6925031 TGGAGCAAGTTTGTTCCCTAAT
1 TGGAGCAAGTTTGTTCCCTAAT
*
6925053 TGGACCAAG
1 TGGAGCAAG
6925062 CTAGCTTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 28 0.97
23 1 0.03
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (22 bp):
TGGAGCAAGTTTGTTCCCTAAT
Found at i:6927846 original size:18 final size:18
Alignment explanation
Indices: 6927823--6927857 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
6927813 TAATAAATAA
*
6927823 ATATTTTAAAAATTTTAT
1 ATATTTAAAAAATTTTAT
6927841 ATATTTAAAAAATTTTA
1 ATATTTAAAAAATTTTA
6927858 CAGCCACTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATATTTAAAAAATTTTAT
Found at i:6928360 original size:86 final size:85
Alignment explanation
Indices: 6928250--6928416 Score: 255
Period size: 86 Copynumber: 2.0 Consensus size: 85
6928240 AGCGTTTACA
* * *
6928250 AAAATAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCTCTTAGAAAAAAAACGCCGCGAAAGATC
1 AAAATAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTGAG-AAAAAAACGCCGCGAAAGATC
6928315 ATATTCCTTTAGCGGCGCACAT
65 ATATT-CTTTAGCGGCGCACAT
* *
6928337 AAAA-AAACGCCGCTGAAGATCATGTTCTTTAGCGGCGCTGAGAAAAAAACGCCGCTAAAGATCA
1 AAAATAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTGAGAAAAAAACGCCGCGAAAGATCA
*
6928401 TGTTCTTTAGCGGCGC
66 TATTCTTTAGCGGCGC
6928417 TTTCTTCACA
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
84 12 0.16
85 24 0.32
86 34 0.46
87 4 0.05
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.22
Consensus pattern (85 bp):
AAAATAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTGAGAAAAAAACGCCGCGAAAGATCA
TATTCTTTAGCGGCGCACAT
Found at i:6928417 original size:42 final size:42
Alignment explanation
Indices: 6928250--6928417 Score: 228
Period size: 42 Copynumber: 3.9 Consensus size: 42
6928240 AGCGTTTACA
* * *
6928250 AAAATAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCTCTTAG
1 AAAA-AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTCAG
* * * *
6928293 AAAAAAAACGCCGCGAAAGATCATATTCCTTTAGCGGCGCACAT
1 -AAAAAAACGCCGCTAAAGATCATGTT-CTTTAGCGGCGCTCAG
* *
6928337 AAAAAAACGCCGCTGAAGATCATGTTCTTTAGCGGCGCTGAG
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTCAG
6928379 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCT
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCT
6928418 TTCTTCACAA
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
42 51 0.47
43 42 0.39
44 16 0.15
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (42 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTCAG
Found at i:6928872 original size:21 final size:21
Alignment explanation
Indices: 6928848--6928898 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
6928838 TTCTTTTGAA
* *
6928848 CCTCTACTTCTCTCACTGTAG
1 CCTCTACTTCCCTCACTGCAG
* * *
6928869 CCTCTGCTTCCCTCGCTGCCG
1 CCTCTACTTCCCTCACTGCAG
6928890 CCTCTACTT
1 CCTCTACTT
6928899 TAAGTTGTAG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.08, C:0.45, G:0.12, T:0.35
Consensus pattern (21 bp):
CCTCTACTTCCCTCACTGCAG
Found at i:6933933 original size:16 final size:16
Alignment explanation
Indices: 6933914--6934012 Score: 67
Period size: 16 Copynumber: 6.1 Consensus size: 16
6933904 TATTAAGTAA
6933914 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
* *
6933930 ATTATATAAGTTAAGT
1 ATTATGTAAGTTATGT
*
6933946 AAGTTACGT-A-TTATGT
1 -A-TTATGTAAGTTATGT
* * *
6933962 GAGCTATGTAAGTTGTAT
1 -A-TTATGTAAGTTATGT
* *
6933980 TTTATGTAAGTTATTT
1 ATTATGTAAGTTATGT
*
6933996 ATTATGTAAGCTATGT
1 ATTATGTAAGTTATGT
6934012 A
1 A
6934013 AGTTGTGTAT
Statistics
Matches: 62, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
16 51 0.82
17 3 0.05
18 8 0.13
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.46
Consensus pattern (16 bp):
ATTATGTAAGTTATGT
Found at i:6933947 original size:25 final size:26
Alignment explanation
Indices: 6933902--6933959 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
6933892 TATATATTTT
*
6933902 TGTATTA-AGTAAATTATGTAAGTTA
1 TGTATTATAGTAAATTAAGTAAGTTA
*
6933927 TGTATTATA-TAAGTTAAGTAAGTTA
1 TGTATTATAGTAAATTAAGTAAGTTA
*
6933952 CGTATTAT
1 TGTATTAT
6933960 GTGAGCTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.45
Consensus pattern (26 bp):
TGTATTATAGTAAATTAAGTAAGTTA
Found at i:6933972 original size:25 final size:25
Alignment explanation
Indices: 6933916--6933975 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
6933906 TTAAGTAAAT
* *
6933916 TATGTAAGTTATGTATTATATAAGT
1 TATGTAAGTTACGTATTATATAAGC
* * *
6933941 TAAGTAAGTTACGTATTATGTGAGC
1 TATGTAAGTTACGTATTATATAAGC
6933966 TATGTAAGTT
1 TATGTAAGTT
6933976 GTATTTTATG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.33, C:0.03, G:0.20, T:0.43
Consensus pattern (25 bp):
TATGTAAGTTACGTATTATATAAGC
Found at i:6933989 original size:41 final size:41
Alignment explanation
Indices: 6933914--6934030 Score: 130
Period size: 41 Copynumber: 2.9 Consensus size: 41
6933904 TATTAAGTAA
* * *
6933914 ATTATGTAAGTTATGT-A-TTATATAAGTTAAGTAAGTTACGT
1 ATTATGTAAGCTATGTAAGTTGTAT-A-TTATGTAAGTTACGT
* * **
6933955 ATTATGTGAGCTATGTAAGTTGTATTTTATGTAAGTTATTT
1 ATTATGTAAGCTATGTAAGTTGTATATTATGTAAGTTACGT
*
6933996 ATTATGTAAGCTATGTAAGTTGTGTATTATGTAAG
1 ATTATGTAAGCTATGTAAGTTGTATATTATGTAAG
6934031 CTATGTACTA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
41 58 0.91
42 1 0.02
43 5 0.08
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.46
Consensus pattern (41 bp):
ATTATGTAAGCTATGTAAGTTGTATATTATGTAAGTTACGT
Found at i:6934003 original size:25 final size:25
Alignment explanation
Indices: 6933982--6934037 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
6933972 AGTTGTATTT
*
6933982 TATGTAAGTTATTTATTATGTAAGC
1 TATGTAAGTTATGTATTATGTAAGC
*
6934007 TATGTAAGTTGTGTATTATGTAAGC
1 TATGTAAGTTATGTATTATGTAAGC
6934032 TATGTA
1 TATGTA
6934038 CTATGATAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (25 bp):
TATGTAAGTTATGTATTATGTAAGC
Found at i:6935345 original size:6 final size:6
Alignment explanation
Indices: 6935336--6935379 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
6935326 TTTAGTTTTA
* *
6935336 ATACAT ATACGT ATACAT ATACAT ATACAT ATACAT ATATAT AT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT AT
6935380 TTCAACGGGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (6 bp):
ATACAT
Found at i:6936171 original size:20 final size:21
Alignment explanation
Indices: 6936141--6936179 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
6936131 ACGGCGATGT
6936141 TTTGCTAACATTTCAATAAAA
1 TTTGCTAACATTTCAATAAAA
6936162 TTTG-TAACATTTCAATAA
1 TTTGCTAACATTTCAATAA
6936180 TTTCTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (21 bp):
TTTGCTAACATTTCAATAAAA
Found at i:6936477 original size:15 final size:16
Alignment explanation
Indices: 6936447--6936482 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
6936437 ATTTTTTAAA
*
6936447 ATATTAATTTATATTT
1 ATATTAATTTACATTT
6936463 ATATT-ATTTACATTT
1 ATATTAATTTACATTT
6936478 ATATT
1 ATATT
6936483 CTAAAATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
ATATTAATTTACATTT
Found at i:6936685 original size:7 final size:7
Alignment explanation
Indices: 6936646--6936700 Score: 58
Period size: 7 Copynumber: 7.9 Consensus size: 7
6936636 GCCCAAATTA
6936646 TAAACCC
1 TAAACCC
*
6936653 TTAACCC
1 TAAACCC
6936660 TAAACACC
1 TAAAC-CC
6936668 -AAACCC
1 TAAACCC
* *
6936674 CAAACCG
1 TAAACCC
*
6936681 TAAACCT
1 TAAACCC
6936688 TAAACCC
1 TAAACCC
6936695 TAAACC
1 TAAACC
6936701 TGCCAATTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
6 2 0.05
7 36 0.90
8 2 0.05
ACGTcount: A:0.44, C:0.40, G:0.02, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:6937731 original size:112 final size:110
Alignment explanation
Indices: 6937410--6937736 Score: 252
Period size: 112 Copynumber: 2.9 Consensus size: 110
6937400 AAAATTTTTA
* * * *
6937410 CGGCGTTTACGGGTAAGCGCCGTTAAAGGCGCTATAGCTCAAGATGAAACGTTGCGTTTCGGTTT
1 CGGCGTTTTC-GGTAAGCGCCGCTAAAGGCGCTATAGCTCAAGACGAAACGTTGCGTTTCAGTTT
* * * ** *
6937475 AAAATTTTTCGATG-TTTTTTAGTTAAACGCCTCTATTATATGGGATATAG
65 AAAATTTTT-G--GCTTTTTTGGTT-AGCGCCACTAAAAGAT-GGATATAG
* * * * * *
6937525 CGGCGTTTTCAGGTAAGCGCCACTAATGCCTCTATA-CGTCAA-ACCCG-AACGATGCGTTT-TG
1 CGGCGTTTTC-GGTAAGCGCCGCTAAAGGCGCTATAGC-TCAAGA--CGAAACGTTGCGTTTCAG
* * ** ** *
6937586 TTCAAAATATTTGCGGCGATTCAGGAATAGCGCCACTAAAAGAT-GATATAG
62 TTTAAAAT-TTT-TGGCTTTTTTGG-TTAGCGCCACTAAAAGATGGATATAG
6937637 CGGCGTTTTCGGCTAAGCGCCGCTAAAGGCGCTATAGCTCAAGACGAAACGTTGCGTTTCAGTTT
1 CGGCGTTTTCGG-TAAGCGCCGCTAAAGGCGCTATAGCTCAAGACGAAACGTTGCGTTTCAGTTT
*
6937702 GAAAATTTTTGGCTTTTTTGGTTACGCGCCGCTAA
65 -AAAATTTTTGGCTTTTTTGGTTA-GCGCCACTAA
6937737 TTGCGGGCTA
Statistics
Matches: 161, Mismatches: 37, Indels: 31
0.70 0.16 0.14
Matches are distributed among these distances:
111 6 0.04
112 67 0.42
113 9 0.06
114 29 0.18
115 49 0.30
116 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (110 bp):
CGGCGTTTTCGGTAAGCGCCGCTAAAGGCGCTATAGCTCAAGACGAAACGTTGCGTTTCAGTTTA
AAATTTTTGGCTTTTTTGGTTAGCGCCACTAAAAGATGGATATAG
Found at i:6938890 original size:34 final size:34
Alignment explanation
Indices: 6938814--6938894 Score: 89
Period size: 34 Copynumber: 2.4 Consensus size: 34
6938804 GCAATGAATC
6938814 AAAGTTAATTGATTCATGTAACAAAAAAAAAGAG
1 AAAGTTAATTGATTCATGTAACAAAAAAAAAGAG
* *
6938848 TTAA-TTAATTGGTTCATGTAACCAAAAAGAAAA-A-
1 -AAAGTTAATTGATTCATGTAA-CAAAAA-AAAAGAG
6938882 AAAGTTAA-TGATT
1 AAAGTTAATTGATT
6938895 TCAAAATCTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
33 6 0.15
34 20 0.51
35 9 0.23
36 4 0.10
ACGTcount: A:0.52, C:0.06, G:0.14, T:0.28
Consensus pattern (34 bp):
AAAGTTAATTGATTCATGTAACAAAAAAAAAGAG
Found at i:6940353 original size:24 final size:24
Alignment explanation
Indices: 6940326--6940372 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
6940316 AATTTGATAA
*
6940326 TTAATTAATTAATTTTAT-TTTTTG
1 TTAATAAATT-ATTTTATATTTTTG
*
6940350 TTAATAAATTGTTTTATATTTTT
1 TTAATAAATTATTTTATATTTTT
6940373 ATAAGATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (24 bp):
TTAATAAATTATTTTATATTTTTG
Found at i:6943927 original size:31 final size:32
Alignment explanation
Indices: 6943892--6943967 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 32
6943882 AAAAAAACTT
6943892 AATAATTCAATAACTTAAATAAAAAATTTCG-
1 AATAATTCAATAACTTAAATAAAAAATTTCGA
* * * * *
6943923 AATAATTAAATGATTTAAATGAAAAATTTTGA
1 AATAATTCAATAACTTAAATAAAAAATTTCGA
*
6943955 AATAGTTCAATAA
1 AATAATTCAATAA
6943968 TCATTGATAA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
31 26 0.72
32 10 0.28
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (32 bp):
AATAATTCAATAACTTAAATAAAAAATTTCGA
Found at i:6951616 original size:22 final size:23
Alignment explanation
Indices: 6951572--6951627 Score: 96
Period size: 22 Copynumber: 2.5 Consensus size: 23
6951562 AATAACATAG
*
6951572 TTTTAATAAGTGCAGAAAAAATC
1 TTTTAATAAATGCAGAAAAAATC
6951595 TTTTAATAAATGCAG-AAAAATC
1 TTTTAATAAATGCAGAAAAAATC
6951617 TTTTAATAAAT
1 TTTTAATAAAT
6951628 AAAAGAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 18 0.56
23 14 0.44
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (23 bp):
TTTTAATAAATGCAGAAAAAATC
Found at i:6951636 original size:22 final size:22
Alignment explanation
Indices: 6951588--6951637 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
6951578 TAAGTGCAGA
**
6951588 AAAAATCTTTTAATAAATGCAG
1 AAAAATCTTTTAATAAATAAAG
6951610 AAAAATCTTTTAATAAATAAAAG
1 AAAAATCTTTTAATAAAT-AAAG
6951633 AAAAA
1 AAAAA
6951638 AATTGAACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (22 bp):
AAAAATCTTTTAATAAATAAAG
Found at i:6952382 original size:28 final size:28
Alignment explanation
Indices: 6952328--6952383 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
6952318 CTATTTATAT
* * ** *
6952328 TCAATTTATACTTTTAATCTTTTAATAA
1 TCAATTTATACATTAAATCCATAAATAA
6952356 TCAATTTATACATTAAATCCATAAATAA
1 TCAATTTATACATTAAATCCATAAATAA
6952384 ATTTCAATAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (28 bp):
TCAATTTATACATTAAATCCATAAATAA
Found at i:6952855 original size:45 final size:45
Alignment explanation
Indices: 6952800--6952887 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
6952790 GCAGTAATAA
* * *
6952800 TAACAGTATTC-AGCACACAAAGTGTTGAATCTGTAACAGTAACGG
1 TAACAGTATTCGA-CACACAAAGTATCGAATCAGTAACAGTAACGG
6952845 TAACAGTATTCGACACACAAAGTATCGAATCAGTAACAGTAAC
1 TAACAGTATTCGACACACAAAGTATCGAATCAGTAACAGTAAC
6952888 AGTAGTTGGC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
45 38 0.97
46 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.23
Consensus pattern (45 bp):
TAACAGTATTCGACACACAAAGTATCGAATCAGTAACAGTAACGG
Found at i:6958856 original size:15 final size:15
Alignment explanation
Indices: 6958836--6958893 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
6958826 TGAATGCTTG
*
6958836 ATGGAATGAAATGCT
1 ATGGAATGAAATGGT
6958851 ATGGAATGAAATGGT
1 ATGGAATGAAATGGT
* *
6958866 ATGGAATGGGAATGGA
1 ATGGAAT-GAAATGGT
6958882 ATGGAATGAAAT
1 ATGGAATGAAAT
6958894 AAAATAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
15 25 0.66
16 13 0.34
ACGTcount: A:0.41, C:0.02, G:0.33, T:0.24
Consensus pattern (15 bp):
ATGGAATGAAATGGT
Found at i:6958869 original size:5 final size:5
Alignment explanation
Indices: 6958836--6958889 Score: 54
Period size: 5 Copynumber: 10.6 Consensus size: 5
6958826 TGAATGCTTG
* ** * *
6958836 ATGGA ATGAA ATGCT ATGGA ATGAA ATGGT ATGGA ATGGGA ATGGA ATGGA
1 ATGGA ATGGA ATGGA ATGGA ATGGA ATGGA ATGGA AT-GGA ATGGA ATGGA
6958887 ATG
1 ATG
6958890 AAATAAAATA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
5 34 0.87
6 5 0.13
ACGTcount: A:0.39, C:0.02, G:0.35, T:0.24
Consensus pattern (5 bp):
ATGGA
Found at i:6959364 original size:15 final size:15
Alignment explanation
Indices: 6959341--6959383 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
6959331 TATTTTATTT
* *
6959341 CATTCCATTCCATAC
1 CATTTCATTCCATAA
6959356 CATTTCATTCCATAA
1 CATTTCATTCCATAA
6959371 CATTTCATTCCAT
1 CATTTCATTCCAT
6959384 CAAGCGTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.28, C:0.33, G:0.00, T:0.40
Consensus pattern (15 bp):
CATTTCATTCCATAA
Found at i:6984601 original size:281 final size:280
Alignment explanation
Indices: 6984057--6984618 Score: 989
Period size: 281 Copynumber: 2.0 Consensus size: 280
6984047 ATTCAAGTTG
*
6984057 ACTTGAAAATGTTTATTAATAACATTGTACATACAAATTTTGAGTCGAAAGTTAACTTGAAAGTT
1 ACTTGAAAATGTTTATTAATAACATTGTACATACAAATTTTGAGTCGAAAATTAACTTGAAAGTT
6984122 TAGAGCCAAATTTACTAATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTCAAATACAA
66 TAGAGCCAAATTTACTAATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTCAAATACAA
* * * * *
6984187 AGAAAATATCATTTGATTCTTCTCTCCGATTTCACTTTTATCTAAGGGTTGTTTGACTTAATCTT
131 AGAAAATATCATGTGATTCTCCTCTCCGATTTCACATTTATCTAAGGGTCGTTTGACTTAATCTC
*
6984252 AGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTAT
196 AGACGAGTGTAGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTAT
6984317 CTTCAGTTGAAACGGACCGA
261 CTTCAGTTGAAACGGACCGA
*
6984337 ACTTGAAAATGTTTATTAATAACATTGTACATACAAATTTTGAGTCGAAAATTCACTTGAAAGTT
1 ACTTGAAAATGTTTATTAATAACATTGTACATACAAATTTTGAGTCGAAAATTAACTTGAAAGTT
* * * *
6984402 TAGAGCCAAATTTACTGATAACTTTGAAAATAAAGTTACAATCTCTGCAAATTTCTTAAATACCA
66 TAGAGCCAAATTTACTAATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTCAAATACAA
*
6984467 AGAAAAATATCATGTGATTCTCCTCTCCGATTTGACATTTATCTAAGGGTCGTTTGACTTAATCT
131 AG-AAAATATCATGTGATTCTCCTCTCCGATTTCACATTTATCTAAGGGTCGTTTGACTTAATCT
*
6984532 CAGACGAGTGTAGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAATAGGTTTGAACCTCCTA
195 CAGACGAGTGTAGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTA
6984597 TCTTCAGTTGAAACGGACCGA
260 TCTTCAGTTGAAACGGACCGA
6984618 A
1 A
6984619 AGGCGGCTTT
Statistics
Matches: 267, Mismatches: 14, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
280 126 0.47
281 141 0.53
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (280 bp):
ACTTGAAAATGTTTATTAATAACATTGTACATACAAATTTTGAGTCGAAAATTAACTTGAAAGTT
TAGAGCCAAATTTACTAATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTCAAATACAA
AGAAAATATCATGTGATTCTCCTCTCCGATTTCACATTTATCTAAGGGTCGTTTGACTTAATCTC
AGACGAGTGTAGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTAT
CTTCAGTTGAAACGGACCGA
Found at i:6986702 original size:751 final size:750
Alignment explanation
Indices: 6984337--6987595 Score: 4881
Period size: 755 Copynumber: 4.3 Consensus size: 750
6984327 AACGGACCGA
* *
6984337 ACTTGAAAATGTTTATTAATAACATTGTACATACAAATTTTGAGTCGAAAATTCACTTGAAAGTT
1 ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCACTTGAAAGTT
* * *
6984402 TAGAGCCAAATTTACTGATAACTTTGAAAATAAAGTTACAATCTCTGCAAATTTCTTAAATACCA
66 TAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTTAAATACAA
* * * * *
6984467 AGAAAAATATCATGTGATTCTCCTCTCCGATTTGACATTTATCTAAGGGTCGTTTGACTTAATCT
131 AGAAAAATATCCT-TGATTCTTCTCTCCGATTTGACTTTTATCCAAGGGTCGTTTGACTTGATCT
* * *
6984532 CAGACGAGTGTAGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAATAGGTTTGAACCTCCTA
195 CAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTG
* * * *
6984597 TCTTCAGTTGAAACGGACCGAAAGGCGGCTTTCTTCAGAAATGACTTTTGGGTTCTTCTCCATCG
260 TCTTCAGTTGAAACGGATCGAAAGGCGGCTTTCTTTAGAAATGACTCTTGGGTTCTTCTCCATAG
* *
6984662 C---AA------GATTGTTGCAAAAATTAGTTTATTCTCAACTTCCATTAATAACA-TTT-T-TT
325 CATAAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTATATT
* * *
6984715 TAGATGCATTTCTCATTTAATTAGTTCATAACAACAAGTTAGTGAAATATG-TCAATTAATTTTA
390 TAGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGCTCGATTAATTTTA
* * *
6984779 TGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGACCTCAAATTCTACAATCCTTCATTGTC
455 TGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCCTTCATTGTC
* * *
6984844 AGGAAATATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACTCTTTTAA
520 AGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTTTTAA
*
6984909 GCCTTCACTTCCTAGCAACGAATACTAAGGTATGCATACTAACACACGTTTTACTATATT-AAAA
585 GCCTTCACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACACGTTTTACTATATTGAAAA
*
6984973 AAATTATATGTATTTATAGCAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATATGAATATTT
650 AAATTATATGTATTTATAACAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATATGAATATTT
* *
6985038 TCTT-TGTTTCCATACAAAACAAATTCATTCAAGTTG
715 T-TTCTATTTCCATACAAAACAACTTCATTCAAGTTG
* *
6985074 ACTTGAAAATGTTTACTAATAACATTGTACACACAAATTCTGAGTCGAAAGTTCACTTGAAAGTT
1 ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCACTTGAAAGTT
* *
6985139 TAGAGCCAAATTTATTGATAACTTTGAAAAGAAATTTACAATCTCTACAAATTTCTTAAATACAA
66 TAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTTAAATAC--
* * *
6985204 AAAAAAAATATATCCTTAGATTCTTCTCTCCGATTTGACTTTTATTCAAGAGTCGTTTGACTTGA
129 AAAGAAAA-ATATCCTT-GATTCTTCTCTCCGATTTGACTTTTATCCAAGGGTCGTTTGACTTGA
* * * *
6985269 TCTCATACAAGTGTGGAATGCTTCAACTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTC
192 TCTCAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTC
* * * *
6985334 TTTTCTTCAGTTGAAACGGATCAAAAGGTGGCTTT-TTTCAGAAATGACTCTTGGGTTCTTCTCC
257 CTGTCTTCAGTTGAAACGGATCGAAAGGCGGCTTTCTTT-AGAAATGACTCTTGGGTTCTTCTCC
*
6985398 ATAGCATGAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTA
321 ATAGCATAAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTA
*
6985463 TATTTAGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAAT-ATCGATTAAT
386 TATTTAGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGCTCGATTAAT
* * * * *
6985527 TTTATACAAAAGTTGAAATTTAAACTTTCAATACGTTAGGGATCTAAAATTGTGCAATCCTTCAT
451 TTTATGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCCTTCAT
* * *
6985592 TGACAGGCAGGCAATATAAGAATACGAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATAC
516 T----GTCAGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATAC
* * * *
6985657 ACTTTTAAGCCTTGACTTCCTAACAACAAATAATAAGGTATGCATACTAACACACGTTTTATTAT
577 ACTTTTAAGCCTTCACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACACGTTTTACTAT
* *
6985722 ATTGAAAAAAAATTATATGCACTTATAACAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATA
642 ATTG-AAAAAAATTATATGTATTTATAACAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATA
*
6985787 TGAATATTTTTTCTATTTCCATACAAAACAACTTCATTCAAGTTT
706 TGAATATTTTTTCTATTTCCATACAAAACAACTTCATTCAAGTTG
* *
6985832 ACTTGAAAATGTTTATTATTAACATTGTACAAACAAATTTTGAGTCGAAAGTTCACTTGCAAA-T
1 ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCACTTG-AAAGT
* * *
6985896 TTAGAACCAAATTTATTGACAACTTTGAAAAGAAAGTTACAATCTCTGTAAATTTCTTAAATACA
65 TTAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTTAAATACA
* * *
6985961 AAGAAAAATACCCGTTGATTCTTCTCTTCAATTTGACTTTTATCCAAGGGTCGTTTGACTTGATC
130 AAGAAAAATATCC-TTGATTCTTCTCTCCGATTTGACTTTTATCCAAGGGTCGTTTGACTTGATC
* *
6986026 TTAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGGCTTGCTTTTGAAACAGGTTTGAACCTCCT
194 TCAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCT
* * * * *
6986091 GTCTTCAGTTGAAACGGATTGAAATGCGACTTTCTTTAGAAACGACTCTTGGGTTCTTCTCTATA
259 GTCTTCAGTTGAAACGGATCGAAAGGCGGCTTTCTTTAGAAATGACTCTTGGGTTCTTCTCCATA
* *
6986156 GCATAAAGTTGTCGGTTGTTACAAGAA-TTAGTTTATTCTCAACTTCCATTAATAACATTTTTTA
324 GCATAAAGTTGTCGATTGTTACAA-AAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTATA
* * *
6986220 TTTAGATGCATTTCGCATTTAATTAGTTTATAACTACAAATTAGTGAAAAATGCT-GATTAATTT
388 TTTAGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGCTCGATTAATTT
*
6986284 TATGCAAAAATTGAAATTTGAACTTTCAATACATTAGTGATCTCAAATTGTGCAATCCTTCATTG
453 TATGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCCTTCATTG
* * *
6986349 TCAGGCAAGATAAGAATACAGAGGTTTTGGCAGCCAACAACTCCAATAAAACAAAATACACTTTT
518 TCAGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTTTT
* *
6986414 AAGCCGTCACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACACCTTTTACTATATTGAA
583 AAGCCTTCACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACACGTTTTACTATATTG-A
* * *
6986479 AAAAAATTATATGTATTTATAACAATCTCTTCAGTCCTTAAAATGGTAATGTAAGTATATGAATA
647 AAAAAATTATATGTATTTATAACAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATATGAATA
6986544 TTTTTTCTATTTCCATACAAAACAACTTCATTCAAGTTG
712 TTTTTTCTATTTCCATACAAAACAACTTCATTCAAGTTG
*
6986583 ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTTGAAAGTTCACTTGAAAGTT
1 ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCACTTGAAAGTT
*
6986648 TAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTACAAATTTCTTAAATACAA
66 TAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTTAAATAC-A
* *
6986713 AAAAATATATATATCCTTAGATTCTTCTCTCCGATTTGACTTTTATCCAAGAGTCGTTTGACTTG
130 AAGAA-A-A-ATATCCTT-GATTCTTCTCTCCGATTTGACTTTTATCCAAGGGTCGTTTGACTTG
* * * * *
6986778 ATCTCATACGAGTGTGGAATGCTTCAAGTGTCATGTTGATTTGTTTTTGAAACAAGTTTGAACCT
191 ATCTCAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCT
* * * * *
6986843 CCTTTCTTCTGTTGAAATGGATCGAAAGGCGGCTTACTTTAGAAATGACTCTTGGTTTCTTCTCC
256 CCTGTCTTCAGTTGAAACGGATCGAAAGGCGGCTTTCTTTAGAAATGACTCTTGGGTTCTTCTCC
* *
6986908 ATAACTTAAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTA
321 ATAGCATAAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTA
* * *
6986973 TATTTAGGTGCATTTCTCATTTGATTAGTTCATAACTACAAGTTAGTG-AAAATG-GCGATTAAT
386 TATTTAGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGCTCGATTAAT
* * * *
6987036 TTTATGCAAAAATTAAAATTTGAACTTTCAATACGTTAGTGGTCTTAAATTGTGCAATCTTTCAT
451 TTTATGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCCTTCAT
* *
6987101 TTTCAAGG-AAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAACATACACT
516 TGTC-AGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACT
* *
6987165 TTTAAGCCTTAACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACATGTTTTACTATATT
580 TTTAAGCCTTCACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACACGTTTTACTATATT
* * * *
6987230 GAAAAAAATTATATGTATTTATAACAGTCTCTTCAATCCTTAGAATGTTAATGTAAGTATATAAA
645 GAAAAAAATTATATGTATTTATAACAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATATGAA
* * * *
6987295 TATTTTCTCTATTTCCATACAGAACAACTTCATTTAGGTTG
710 TATTTTTTCTATTTCCATACAAAACAACTTCATTCAAGTTG
* * * *
6987336 ACTTGAAAATGTTTATTAATAAGATTGTACATACAAATTTTGAATCGAAAGTTCACTTGGAAGTT
1 ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCACTTGAAAGTT
* * *
6987401 TAAAGCCAAATTTATTTATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTATTAAATACAA
66 TAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTTAAATACAA
* * *
6987466 AGAAAAATATCCTCTGATCCTTCTCTCCAATTTGACTTTTATCCAAGGGTTGTTTGACTTGATCT
131 AGAAAAATATCCT-TGATTCTTCTCTCCGATTTGACTTTTATCCAAGGGTCGTTTGACTTGATCT
* * *
6987531 CAGACGAGTGTGGAGTGCTTCAAGTGTCATATTGACTTTCTTTTAAAACAGGTTTGAACCTCCTG
195 CAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTG
6987596 ATAAGCTATA
Statistics
Matches: 2278, Mismatches: 204, Indels: 68
0.89 0.08 0.03
Matches are distributed among these distances:
737 120 0.05
739 9 0.00
740 164 0.07
743 2 0.00
749 151 0.07
750 8 0.00
751 336 0.15
752 126 0.06
753 216 0.09
754 196 0.09
755 600 0.26
756 134 0.06
757 2 0.00
758 211 0.09
759 3 0.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (750 bp):
ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCACTTGAAAGTT
TAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTTAAATACAA
AGAAAAATATCCTTGATTCTTCTCTCCGATTTGACTTTTATCCAAGGGTCGTTTGACTTGATCTC
AGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTGT
CTTCAGTTGAAACGGATCGAAAGGCGGCTTTCTTTAGAAATGACTCTTGGGTTCTTCTCCATAGC
ATAAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTATATTT
AGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGCTCGATTAATTTTAT
GCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCCTTCATTGTCA
GGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTTTTAAG
CCTTCACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACACGTTTTACTATATTGAAAAA
AATTATATGTATTTATAACAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATATGAATATTTT
TTCTATTTCCATACAAAACAACTTCATTCAAGTTG
Found at i:6988070 original size:11 final size:10
Alignment explanation
Indices: 6988043--6988069 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
6988033 TTTCTTCTAA
6988043 AGTTTTTATG
1 AGTTTTTATG
6988053 AGTTTTTATG
1 AGTTTTTATG
6988063 AGTTTTT
1 AGTTTTT
6988070 TTTTGCTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.63
Consensus pattern (10 bp):
AGTTTTTATG
Found at i:6988933 original size:7 final size:7
Alignment explanation
Indices: 6988890--6988922 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
6988880 TAATTTAGCC
6988890 ATTTT-T
1 ATTTTAT
6988896 ATTTTAT
1 ATTTTAT
6988903 -TTTTAT
1 ATTTTAT
6988909 ATTTTAT
1 ATTTTAT
6988916 ATTTTAT
1 ATTTTAT
6988923 TTTATTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 11 0.44
7 14 0.56
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
ATTTTAT
Found at i:6988942 original size:19 final size:19
Alignment explanation
Indices: 6988903--6988944 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
6988893 TTTATTTTAT
* *
6988903 TTTTATATTTTATATTTTA
1 TTTTATATTTTACATTCTA
*
6988922 TTTTATTTTTTACATTCTA
1 TTTTATATTTTACATTCTA
6988941 TTTT
1 TTTT
6988945 TTTCTTTTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTATATTTTACATTCTA
Found at i:6988945 original size:25 final size:24
Alignment explanation
Indices: 6988890--6988945 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 24
6988880 TAATTTAGCC
* *
6988890 ATTTTTATTTTATTTTTATATTTT
1 ATTTTTATTTTATTTTTACATTCT
6988914 ATATTTTATTTTATTTTTTACATTCT
1 AT-TTTTATTTTA-TTTTTACATTCT
6988940 ATTTTT
1 ATTTTT
6988946 TTCTTTTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 2 0.07
25 14 0.50
26 12 0.43
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (24 bp):
ATTTTTATTTTATTTTTACATTCT
Found at i:6992443 original size:27 final size:27
Alignment explanation
Indices: 6992399--6992542 Score: 116
Period size: 27 Copynumber: 5.3 Consensus size: 27
6992389 TATCTGGACC
*
6992399 GAAATACCCCTC-AAGGGTAAAATAACT
1 GAAATA-CCCTCGATGGGTAAAATAACT
* * *
6992426 GAAATATCCTCGATGGGTAAAATGACC
1 GAAATACCCTCGATGGGTAAAATAACT
* *
6992453 GAAATACCCTCGATGAGTAAAATGACT
1 GAAATACCCTCGATGGGTAAAATAACT
*
6992480 TAAATACCCCTC-ATAGGGTAAAATAACT
1 GAAATA-CCCTCGAT-GGGTAAAATAACT
* * * * *
6992508 AAAATGCCCCCG-TAGGGTAGAAT-ACC
1 GAAATACCCTCGAT-GGGTAAAATAACT
6992534 GAAATACCC
1 GAAATACCC
6992543 CTGTGGGGTA
Statistics
Matches: 96, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
26 13 0.14
27 63 0.66
28 20 0.21
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.20
Consensus pattern (27 bp):
GAAATACCCTCGATGGGTAAAATAACT
Found at i:6992473 original size:54 final size:55
Alignment explanation
Indices: 6992395--6992720 Score: 145
Period size: 54 Copynumber: 6.0 Consensus size: 55
6992385 TCGATATCTG
* *
6992395 GACCGAAATACCCCTCAAGGGTAAAATAACTGAAATA-TCCTCGAT-GGGTAAAAT
1 GACCGAAATACCCCTCAAGAGTAAAATAACTGAAATACCCCTC-ATAGGGTAAAAT
* * *
6992449 GACCGAAATA-CCCTCGATGAGTAAAATGACTTAAATACCCCTCATAGGGTAAAAT
1 GACCGAAATACCCCTC-AAGAGTAAAATAACTGAAATACCCCTCATAGGGTAAAAT
* ** * * * * * * *
6992504 AACTAAAATGCCCC-CGTAGGGTAGAAT-ACCGAAATACCCCT-GTGGGGTAAAAT
1 GACCGAAATACCCCTC-AAGAGTAAAATAACTGAAATACCCCTCATAGGGTAAAAT
* * * ** * * *
6992557 GATCGTAATGCCCCTGTAGGGTAAAATAAC-CATAATACCCCT-ATAGGATAAAAT
1 GACCGAAATACCCCTCAAGAGTAAAATAACTGA-AATACCCCTCATAGGGTAAAAT
* * ** ** * * * * * *
6992611 GACTGTAATGTCCCTGTAGGGTAAAATGACCGTAATGCCCCT-GTAGGGTAAAAT
1 GACCGAAATACCCCTCAAGAGTAAAATAACTGAAATACCCCTCATAGGGTAAAAT
* * * * * *
6992665 GACC-ATAATGCCCCT-ATAGGGTAAAATGATTGTAATGCCCCT-ATAGGGTAAAAT
1 GACCGA-AATACCCCTCA-AGAGTAAAATAACTGAAATACCCCTCATAGGGTAAAAT
6992719 GA
1 GA
6992721 TCGTAATGCC
Statistics
Matches: 218, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
53 35 0.16
54 152 0.70
55 28 0.13
56 3 0.01
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (55 bp):
GACCGAAATACCCCTCAAGAGTAAAATAACTGAAATACCCCTCATAGGGTAAAAT
Found at i:6992554 original size:81 final size:83
Alignment explanation
Indices: 6992400--6992597 Score: 214
Period size: 81 Copynumber: 2.4 Consensus size: 83
6992390 ATCTGGACCG
* * *
6992400 AAATACCCCTCA-AGGGTAAAATAACTGAAATATCCTCGATGGGTAAAATGACCGAAATACCCTC
1 AAATACCCCTCATAGGGTAAAATAACTAAAATACCCCCGATGGGTAAAATGACCGAAATACCCTC
*
6992464 GATGAGTAAAATGA-CTT
66 GATGAGTAAAATGATCGT
* *
6992481 AAATACCCCTCATAGGGTAAAATAACTAAAATGCCCCCG-TAGGGTAGAAT-ACCGAAATACCC-
1 AAATACCCCTCATAGGGTAAAATAACTAAAATACCCCCGAT-GGGTAAAATGACCGAAATACCCT
*
6992543 CTG-TGGGGTAAAATGATCGT
65 C-GAT-GAGTAAAATGATCGT
* * * *
6992563 -AATGCCCCT-GTAGGGTAAAATAACCATAATACCCC
1 AAATACCCCTCATAGGGTAAAATAACTAAAATACCCC
6992598 TATAGGATAA
Statistics
Matches: 100, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
80 24 0.24
81 44 0.44
82 32 0.32
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.21
Consensus pattern (83 bp):
AAATACCCCTCATAGGGTAAAATAACTAAAATACCCCCGATGGGTAAAATGACCGAAATACCCTC
GATGAGTAAAATGATCGT
Found at i:6992571 original size:27 final size:27
Alignment explanation
Indices: 6992510--6992738 Score: 271
Period size: 27 Copynumber: 8.5 Consensus size: 27
6992500 AAATAACTAA
* * *
6992510 AATGCCCCCGTAGGGTAGAAT-ACCGA
1 AATGCCCCTGTAGGGTAAAATGACCGT
* * *
6992536 AATACCCCTGTGGGGTAAAATGATCGT
1 AATGCCCCTGTAGGGTAAAATGACCGT
* *
6992563 AATGCCCCTGTAGGGTAAAATAACCAT
1 AATGCCCCTGTAGGGTAAAATGACCGT
* * * *
6992590 AATACCCCTATAGGATAAAATGACTGT
1 AATGCCCCTGTAGGGTAAAATGACCGT
*
6992617 AATGTCCCTGTAGGGTAAAATGACCGT
1 AATGCCCCTGTAGGGTAAAATGACCGT
*
6992644 AATGCCCCTGTAGGGTAAAATGACCAT
1 AATGCCCCTGTAGGGTAAAATGACCGT
* **
6992671 AATGCCCCTATAGGGTAAAATGATTGT
1 AATGCCCCTGTAGGGTAAAATGACCGT
* *
6992698 AATGCCCCTATAGGGTAAAATGATCGT
1 AATGCCCCTGTAGGGTAAAATGACCGT
*
6992725 AATGCCCTTGTAGG
1 AATGCCCCTGTAGG
6992739 TAGAGGTGTT
Statistics
Matches: 171, Mismatches: 31, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
26 17 0.10
27 154 0.90
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (27 bp):
AATGCCCCTGTAGGGTAAAATGACCGT
Found at i:6992626 original size:81 final size:81
Alignment explanation
Indices: 6992540--6992738 Score: 317
Period size: 81 Copynumber: 2.5 Consensus size: 81
6992530 TACCGAAATA
*
6992540 CCCCTGTGGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCATAATACCCCTATAGGA
1 CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCATAATACCCCTATAGGA
6992605 TAAAATGACTGTAATG
66 TAAAATGACTGTAATG
* * * * *
6992621 TCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCATAATGCCCCTATAGGG
1 CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCATAATACCCCTATAGGA
*
6992686 TAAAATGATTGTAATG
66 TAAAATGACTGTAATG
* *
6992702 CCCCTATAGGGTAAAATGATCGTAATGCCCTTGTAGG
1 CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGG
6992739 TAGAGGTGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 107 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (81 bp):
CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCATAATACCCCTATAGGA
TAAAATGACTGTAATG
Found at i:6992976 original size:11 final size:11
Alignment explanation
Indices: 6992960--6992984 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6992950 ATTTTTTAAC
6992960 TTTAAAATACT
1 TTTAAAATACT
6992971 TTTAAAATACT
1 TTTAAAATACT
6992982 TTT
1 TTT
6992985 TTTTAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (11 bp):
TTTAAAATACT
Found at i:6993014 original size:40 final size:41
Alignment explanation
Indices: 6992943--6993104 Score: 125
Period size: 51 Copynumber: 3.7 Consensus size: 41
6992933 TTTATTTTTA
* *
6992943 TTTTTTT-A-TTTTTTAACTTTAAAATACTTTTAAAATACT
1 TTTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATACT
*
6992982 TTTTTTTAATTTTTTTAATTTTAAAAT-TTTTTAAAATTTTTTTTAAAAT
1 TTTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAA-------T--ACT
*
6993031 ACTTTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATAC-
1 -TTTTT-TTAATTTTTTTAATTTTAAAATATTTTTAAAATACT
6993073 TTTTTTTAATTTTTATTTTAATTTTTAAAATA
1 TTTTTTTAA--TTT-TTTTAA-TTTTAAAATA
6993105 AATTTTTGGT
Statistics
Matches: 99, Mismatches: 6, Indels: 31
0.73 0.04 0.23
Matches are distributed among these distances:
39 7 0.07
40 13 0.13
41 20 0.20
42 3 0.03
43 7 0.07
44 10 0.10
45 1 0.01
47 1 0.01
49 2 0.02
50 4 0.04
51 22 0.22
52 9 0.09
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (41 bp):
TTTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATACT
Found at i:6993039 original size:51 final size:54
Alignment explanation
Indices: 6992970--6993081 Score: 194
Period size: 51 Copynumber: 2.1 Consensus size: 54
6992960 TTTAAAATAC
6992970 TTTTAAAATACTTTTTTTTAATTTTTTTAATTTTAAAAT-TTTTTAAAAT-TTT
1 TTTTAAAATACTTTTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATATTT
6993022 TTTTAAAATAC-TTTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATACTTT
1 TTTTAAAATACTTTTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATA-TTT
6993076 TTTTAA
1 TTTTAA
6993082 TTTTTATTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
51 27 0.47
52 21 0.37
54 9 0.16
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (54 bp):
TTTTAAAATACTTTTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATATTT
Found at i:6993098 original size:51 final size:50
Alignment explanation
Indices: 6992960--6993098 Score: 174
Period size: 51 Copynumber: 2.7 Consensus size: 50
6992950 ATTTTTTAAC
** *
6992960 TTTAAAATACTTTTAAAATACTTTTTTTTAATTTTTTTAATTTTAAAATTT
1 TTTAAAATTTTTTTTAAATA-TTTTTTTTAATTTTTTTAATTTTAAAATTT
*
6993011 TTTAAAATTTTTTTTAAAATACTTTTTTTAATTTTTTTAATTTTAAAATATT
1 TTTAAAATTTTTTTT-AAATATTTTTTTTAATTTTTTTAATTTTAAAAT-TT
6993063 TTTAAAATACTTTTTTT-AAT-TTTTATTTTAATTTTT
1 TTTAAAAT--TTTTTTTAAATATTTT-TTTTAATTTTT
6993099 AAAATAAATT
Statistics
Matches: 78, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
51 42 0.54
52 29 0.37
54 7 0.09
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (50 bp):
TTTAAAATTTTTTTTAAATATTTTTTTTAATTTTTTTAATTTTAAAATTT
Found at i:6993465 original size:24 final size:24
Alignment explanation
Indices: 6993390--6993471 Score: 78
Period size: 24 Copynumber: 3.5 Consensus size: 24
6993380 TTCAAGGTCA
* * * *
6993390 AATGATTGTTTTGTCTGTGGTT-A
1 AATGACTGATTTGTCTGTGTTTGG
6993413 AATGACTGATTTGTCTGTGTTTGG
1 AATGACTGATTTGTCTGTGTTTGG
* *
6993437 TATGACTGATTTGTTTGTGATTT-G
1 AATGACTGATTTGTCTGTG-TTTGG
*
6993461 AATGATTGATT
1 AATGACTGATT
6993472 CTGAGCATGG
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
23 19 0.39
24 27 0.55
25 3 0.06
ACGTcount: A:0.20, C:0.05, G:0.26, T:0.50
Consensus pattern (24 bp):
AATGACTGATTTGTCTGTGTTTGG
Found at i:6993625 original size:26 final size:26
Alignment explanation
Indices: 6993587--6993644 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
6993577 TTGGCCATAT
* *
6993587 ATACTATTGCTGGCAACTTTGCTGTG
1 ATACTATTACTGGCAACTTTGCTGCG
* * * *
6993613 ATACTGTTACTGGGAGCTTTGTTGCG
1 ATACTATTACTGGCAACTTTGCTGCG
6993639 ATACTA
1 ATACTA
6993645 CTAATGGCTT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.38
Consensus pattern (26 bp):
ATACTATTACTGGCAACTTTGCTGCG
Found at i:6993684 original size:32 final size:31
Alignment explanation
Indices: 6993643--6993898 Score: 226
Period size: 32 Copynumber: 8.0 Consensus size: 31
6993633 GTTGCGATAC
* * *
6993643 TACTAATGGCTTTGTTCTGATCATAGTACTGT
1 TACTGATGGCTTTGTGCCGATCATA-TACTGT
* * *
6993675 TACTGATGGCTTTGTGTCGATCACAGTACCGT
1 TACTGATGGCTTTGTGCCGATCATA-TACTGT
* * * * *
6993707 TACTGAAGGTTTTGTGCCAATTATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATA-TACTGT
*
6993739 TACCGATGG-TTGTGTGCCGATCATATCACTGT
1 TACTGATGGCTT-TGTGCCGATCATAT-ACTGT
* * * *
6993771 TACTGATGGCTGTGTGTCAATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATAT-ACTGT
* *
6993803 TGCTGATGGCTTTGTGCCGATCATGTTACTGT
1 TACTGATGGCTTTGTGCCGATCAT-ATACTGT
* *
6993835 TACTGATGGCTGTGTGCCGATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATAT-ACTGT
* *
6993867 TACTGATGGCTTTGTGCCAATCACATTACTGT
1 TACTGATGGCTTTGTGCCGATCATA-TACTGT
6993899 ACTTATGACT
Statistics
Matches: 181, Mismatches: 37, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
31 4 0.02
32 174 0.96
33 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (31 bp):
TACTGATGGCTTTGTGCCGATCATATACTGT
Found at i:6993837 original size:96 final size:96
Alignment explanation
Indices: 6993661--6993891 Score: 286
Period size: 96 Copynumber: 2.4 Consensus size: 96
6993651 GCTTTGTTCT
* * *
6993661 GATCATAGT-ACTGTTACTGATGGCTTTGTGTCGATCACAGTACCGTTACTGAAGGTTTTGTGCC
1 GATCATA-TCACTGTTACTGATGGCTTTGTGTCAATCACAGTACCGCTACTGAAGGCTTTGTGCC
* *
6993725 AATTATATTACCGTTACCGATGGTTGTGTGCC
65 AATCATATTACCGTTACCGATGGCTGTGTGCC
* * * * *
6993757 GATCATATCACTGTTACTGATGGCTGTGTGTCAATCATA-TCACTGCTGCTGATGGCTTTGTGCC
1 GATCATATCACTGTTACTGATGGCTTTGTGTCAATCACAGT-ACCGCTACTGAAGGCTTTGTGCC
* * * *
6993821 GATCATGTTACTGTTACTGATGGCTGTGTGCC
65 AATCATATTACCGTTACCGATGGCTGTGTGCC
* *
6993853 GATCATATCACTGCTACTGATGGCTTTGTGCCAATCACA
1 GATCATATCACTGTTACTGATGGCTTTGTGTCAATCACA
6993892 TTACTGTACT
Statistics
Matches: 115, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
95 2 0.02
96 113 0.98
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.35
Consensus pattern (96 bp):
GATCATATCACTGTTACTGATGGCTTTGTGTCAATCACAGTACCGCTACTGAAGGCTTTGTGCCA
ATCATATTACCGTTACCGATGGCTGTGTGCC
Found at i:6997008 original size:5 final size:5
Alignment explanation
Indices: 6996998--6997067 Score: 61
Period size: 5 Copynumber: 13.0 Consensus size: 5
6996988 AGGATCATTG
*
6996998 ATTTT ATTTT ATTTT ATTTT ATTTTT ATTTTT ATTTTT ACTTTT GTTTT
1 ATTTT ATTTT ATTTT ATTTT A-TTTT A-TTTT A-TTTT A-TTTT ATTTT
*
6997047 -TTGTT GTTTT ATTTTT ATTTT
1 ATT-TT ATTTT A-TTTT ATTTT
6997068 CTTAGACTTC
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
4 2 0.03
5 28 0.48
6 28 0.48
ACGTcount: A:0.14, C:0.01, G:0.04, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:6997025 original size:6 final size:6
Alignment explanation
Indices: 6996999--6997067 Score: 65
Period size: 6 Copynumber: 11.5 Consensus size: 6
6996989 GGATCATTGA
6996999 TTTTA- TTTTA- TTTTA- TTTTAT TTTTAT TTTTAT TTTTACT TTTGT-T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T TTT-TAT
*
6997045 TTTTGTT GTTTTAT TTTTAT TTT
1 TTTT-AT -TTTTAT TTTTAT TTT
6997068 CTTAGACTTC
Statistics
Matches: 57, Mismatches: 1, Indels: 11
0.83 0.01 0.16
Matches are distributed among these distances:
5 16 0.28
6 30 0.53
7 6 0.11
8 5 0.09
ACGTcount: A:0.13, C:0.01, G:0.04, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:7017021 original size:16 final size:16
Alignment explanation
Indices: 7017000--7017032 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7016990 ATGTTACTGT
7017000 TTGTTTCTCTTGAAAA
1 TTGTTTCTCTTGAAAA
7017016 TTGTTTCTCTTGAAAA
1 TTGTTTCTCTTGAAAA
7017032 T
1 T
7017033 AGACTCATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (16 bp):
TTGTTTCTCTTGAAAA
Found at i:7025094 original size:40 final size:40
Alignment explanation
Indices: 7025048--7025171 Score: 185
Period size: 40 Copynumber: 3.1 Consensus size: 40
7025038 TGTTATACTC
* *
7025048 TCTGTCTAGTGTGTTTCGGTTGGACTAGCTCTTATAAGCT
1 TCTGTCTAGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
* *
7025088 TCTGTCTAGTGTATTTCGGTTGGATTAGCTCTTATGAGCA
1 TCTGTCTAGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
* * *
7025128 TCTATCTGGTGTGTTTCGGTTGAACTAGCTCTTATGAGCA
1 TCTGTCTAGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
7025168 TCTG
1 TCTG
7025172 GTGTGTTTTA
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.16, C:0.17, G:0.25, T:0.42
Consensus pattern (40 bp):
TCTGTCTAGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
Found at i:7025186 original size:36 final size:38
Alignment explanation
Indices: 7025056--7025186 Score: 104
Period size: 40 Copynumber: 3.4 Consensus size: 38
7025046 TCTCTGTCTA
* * * * * *
7025056 GTGTGTTTCGGTTGGACTAGCTCTTATAAGCTTCTGTCTA
1 GTGTGTTTCAGTTGAACTAGCTCTTATGAG--ACTATCTG
* * * *
7025096 GTGTATTTCGGTTGGATTAGCTCTTATGAGCATCTATCTG
1 GTGTGTTTCAGTTGAACTAGCTCTTATGAG-A-CTATCTG
*
7025136 GTGTGTTTCGGTTGAACTAGCTCTTATGAG-C-ATCTG
1 GTGTGTTTCAGTTGAACTAGCTCTTATGAGACTATCTG
*
7025172 GTGTGTTTTAGTTGA
1 GTGTGTTTCAGTTGA
7025187 TCTAATGATG
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
36 18 0.23
37 1 0.01
40 59 0.76
ACGTcount: A:0.16, C:0.15, G:0.27, T:0.43
Consensus pattern (38 bp):
GTGTGTTTCAGTTGAACTAGCTCTTATGAGACTATCTG
Found at i:7028505 original size:274 final size:274
Alignment explanation
Indices: 7028016--7028565 Score: 974
Period size: 274 Copynumber: 2.0 Consensus size: 274
7028006 CATTTTCTTT
**
7028016 CTATTAGCTTGACAATGAAAATACTTTGTATTTCGATCTCCGAGTAATAGCCAATCACTACGAGA
1 CTATTAGCTTGACAATGAAAATACTTTGTATTTCGATCTCCGAGTAATAGCCAATCACTAAAAGA
*
7028081 TTTCTGTTTCCAAAAAAGTTCCTCGTTGTCTATGACACCTTCAAGTTCAGCCTACAGGTCTTTCT
66 TTTCTGTTTCCAAAAAAGTTCCTCGTTGTCTAGGACACCTTCAAGTTCAGCCTACAGGTCTTTCT
* *
7028146 CTAGCTCAATAAGCTTTCTTGATCGATATCTCTCAAGGCACCGTTGAATACCACCAATCCATAAC
131 CTAGCTCAATAAGCTTTCTTGATCGATAACTCTCAAGGCACCATTGAATACCACCAATCCATAAC
* * * *
7028211 AGTAAAATTTTTTTTCTCTTAAAAATGTTACCGAAGACCTCCAAATTCCATTTTTTAACAGCTTC
196 AGTAAAATCTGTTTTCTCTTAAAAATGTTACCGAAAACCTCCAAATTCCATTTCTTAACAGCTTC
*
7028276 AACAAAACCCCAAA
261 AACAAAAACCCAAA
7028290 CTATTAGCTTGACAATGAAAATACTTTGTATTTCGATCTCCGAGTAATAGCCAATCACTAAAAGA
1 CTATTAGCTTGACAATGAAAATACTTTGTATTTCGATCTCCGAGTAATAGCCAATCACTAAAAGA
** *
7028355 TTTCTGTTTCCAAAAAAGTTCCTCGTTGTCTAGGACACCTTCAAGTTCAGTTTGCAGGTCTTTCT
66 TTTCTGTTTCCAAAAAAGTTCCTCGTTGTCTAGGACACCTTCAAGTTCAGCCTACAGGTCTTTCT
7028420 CTAGCTCAATAAGCTTTCTTGATCGATAACTCTCAAGGCACCATTGAATACCACCAATCCATAAC
131 CTAGCTCAATAAGCTTTCTTGATCGATAACTCTCAAGGCACCATTGAATACCACCAATCCATAAC
7028485 AGTAAAATCTGTTTTCTCTTAAAAATGTTACCGAAAACCTCCAAATTCCATTTCTTAACAGCTTC
196 AGTAAAATCTGTTTTCTCTTAAAAATGTTACCGAAAACCTCCAAATTCCATTTCTTAACAGCTTC
*
7028550 AACAAAAATCCAAA
261 AACAAAAACCCAAA
7028564 CT
1 CT
7028566 GGCCCCTCCG
Statistics
Matches: 262, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
274 262 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (274 bp):
CTATTAGCTTGACAATGAAAATACTTTGTATTTCGATCTCCGAGTAATAGCCAATCACTAAAAGA
TTTCTGTTTCCAAAAAAGTTCCTCGTTGTCTAGGACACCTTCAAGTTCAGCCTACAGGTCTTTCT
CTAGCTCAATAAGCTTTCTTGATCGATAACTCTCAAGGCACCATTGAATACCACCAATCCATAAC
AGTAAAATCTGTTTTCTCTTAAAAATGTTACCGAAAACCTCCAAATTCCATTTCTTAACAGCTTC
AACAAAAACCCAAA
Found at i:7032446 original size:18 final size:18
Alignment explanation
Indices: 7032425--7032459 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7032415 TAAAAAATTA
7032425 TAAAAAACATAAAAAACG
1 TAAAAAACATAAAAAACG
* *
7032443 TAAAAAAGATGAAAAAC
1 TAAAAAACATAAAAAAC
7032460 AAAAAGAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.09, G:0.09, T:0.11
Consensus pattern (18 bp):
TAAAAAACATAAAAAACG
Found at i:7033137 original size:122 final size:122
Alignment explanation
Indices: 7032988--7033232 Score: 490
Period size: 122 Copynumber: 2.0 Consensus size: 122
7032978 ACCCAGGTGA
7032988 AACATCAAATCAACCTGTTCAACCAAGAATAGATGATTTAAATAAAAGAAATGTTGCTCAAGGAG
1 AACATCAAATCAACCTGTTCAACCAAGAATAGATGATTTAAATAAAAGAAATGTTGCTCAAGGAG
7033053 GAATATATTTAGATTTAACTAATACTCCTATATCAGACTATGAAAAAGTTATAGATG
66 GAATATATTTAGATTTAACTAATACTCCTATATCAGACTATGAAAAAGTTATAGATG
7033110 AACATCAAATCAACCTGTTCAACCAAGAATAGATGATTTAAATAAAAGAAATGTTGCTCAAGGAG
1 AACATCAAATCAACCTGTTCAACCAAGAATAGATGATTTAAATAAAAGAAATGTTGCTCAAGGAG
7033175 GAATATATTTAGATTTAACTAATACTCCTATATCAGACTATGAAAAAGTTATAGATG
66 GAATATATTTAGATTTAACTAATACTCCTATATCAGACTATGAAAAAGTTATAGATG
7033232 A
1 A
7033233 TTGGGTACAG
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
122 123 1.00
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.29
Consensus pattern (122 bp):
AACATCAAATCAACCTGTTCAACCAAGAATAGATGATTTAAATAAAAGAAATGTTGCTCAAGGAG
GAATATATTTAGATTTAACTAATACTCCTATATCAGACTATGAAAAAGTTATAGATG
Found at i:7033762 original size:18 final size:18
Alignment explanation
Indices: 7033728--7033775 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
7033718 GGATTGGGAA
*
7033728 TCATATTCTTTT-TGTTTT
1 TCATATT-TTTTACGTTTT
7033746 TCATATTTTTTACGTTTT
1 TCATATTTTTTACGTTTT
* *
7033764 TTATGTTTTTTA
1 TCATATTTTTTA
7033776 TAATTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 4 0.15
18 22 0.85
ACGTcount: A:0.15, C:0.08, G:0.06, T:0.71
Consensus pattern (18 bp):
TCATATTTTTTACGTTTT
Found at i:7053208 original size:24 final size:24
Alignment explanation
Indices: 7053181--7053226 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
7053171 AACCTAATTC
7053181 TAATAAAAG-TCAAATATATTATGT
1 TAATAAAAGCT-AAATATATTATGT
* *
7053205 TAATGAATGCTAAATATATTAT
1 TAATAAAAGCTAAATATATTAT
7053227 ACTCATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (24 bp):
TAATAAAAGCTAAATATATTATGT
Found at i:7053381 original size:21 final size:21
Alignment explanation
Indices: 7053334--7053384 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
7053324 GATGAATCAT
* *
7053334 CCTTAAATCTCTAAATCCAAA
1 CCTTATATCTCTAAACCCAAA
7053355 CCTTATATCTCTAAACCCAAA
1 CCTTATATCTCTAAACCCAAA
7053376 CCTTATATC
1 CCTTATATC
7053385 AATAGTTGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.31, G:0.00, T:0.31
Consensus pattern (21 bp):
CCTTATATCTCTAAACCCAAA
Found at i:7053698 original size:34 final size:34
Alignment explanation
Indices: 7053655--7053722 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
7053645 GAACTATGTG
7053655 TACATATACCCCTAACTTAATACAACTCTTAAAT
1 TACATATACCCCTAACTTAATACAACTCTTAAAT
7053689 TACATATACCCCTAACTTAATACAACTCTTAAAT
1 TACATATACCCCTAACTTAATACAACTCTTAAAT
7053723 GCACAAACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.32
Consensus pattern (34 bp):
TACATATACCCCTAACTTAATACAACTCTTAAAT
Found at i:7060575 original size:2 final size:2
Alignment explanation
Indices: 7060568--7060592 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7060558 CTTTATTAAA
7060568 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7060593 GTTGCTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7062193 original size:2 final size:2
Alignment explanation
Indices: 7062186--7062211 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7062176 AATTGGTTGC
7062186 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7062212 AAGGAAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7064716 original size:23 final size:22
Alignment explanation
Indices: 7064690--7064742 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 22
7064680 ATATAAATTT
7064690 TAAATATTT-TAAAATAATTAATA
1 TAAATATTTATAAAAT--TTAATA
*
7064713 TAAATTATTTATAAAATTTAATT
1 TAAA-TATTTATAAAATTTAATA
7064736 TAAATAT
1 TAAATAT
7064743 AAAAATCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 3 0.11
23 13 0.48
24 5 0.19
25 6 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TAAATATTTATAAAATTTAATA
Found at i:7067235 original size:13 final size:13
Alignment explanation
Indices: 7067217--7067244 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7067207 TGCCATATGT
7067217 ATAATCCCTGACG
1 ATAATCCCTGACG
7067230 ATAATCCCTGACG
1 ATAATCCCTGACG
7067243 AT
1 AT
7067245 CCCCGAGCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (13 bp):
ATAATCCCTGACG
Found at i:7067874 original size:30 final size:30
Alignment explanation
Indices: 7067838--7068009 Score: 220
Period size: 30 Copynumber: 5.7 Consensus size: 30
7067828 ATCCAATGCT
* *
7067838 CAAATCAATTCGGTAATATATATACATATG
1 CAAATCAATTCGGCAATATATATACATATA
7067868 CAAATCAATTCGGCAATATATATACATATA
1 CAAATCAATTCGGCAATATATATACATATA
* * * *
7067898 TAAATCAATTCGACAATGTGTAT-CTATATA
1 CAAATCAATTCGGCAATATATATAC-ATATA
* * * *
7067928 AAAATCAATTCAGCAATGTATATCCATATA
1 CAAATCAATTCGGCAATATATATACATATA
* *
7067958 CAAATCAATTCGGCAATGTATATCCATATA
1 CAAATCAATTCGGCAATATATATACATATA
7067988 CAAATCAATTCGGCAATATATA
1 CAAATCAATTCGGCAATATATA
7068010 AAACATGTAC
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
29 1 0.01
30 125 0.98
31 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (30 bp):
CAAATCAATTCGGCAATATATATACATATA
Found at i:7067993 original size:90 final size:90
Alignment explanation
Indices: 7067839--7068004 Score: 251
Period size: 90 Copynumber: 1.8 Consensus size: 90
7067829 TCCAATGCTC
* * * *
7067839 AAATCAATTCGGTAATATATATACATATGCAAATCAATTCGGCAATATATATACATATATAAATC
1 AAATCAATTCAGCAATATATATACATATACAAATCAATTCGGCAATATATATACATATACAAATC
7067904 AATTCGACAATGTGTATCTATATAA
66 AATTCGACAATGTGTATCTATATAA
* * * *
7067929 AAATCAATTCAGCAATGTATATCCATATACAAATCAATTCGGCAATGTATATCCATATACAAATC
1 AAATCAATTCAGCAATATATATACATATACAAATCAATTCGGCAATATATATACATATACAAATC
*
7067994 AATTCGGCAAT
66 AATTCGACAAT
7068005 ATATAAAACA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 67 1.00
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.31
Consensus pattern (90 bp):
AAATCAATTCAGCAATATATATACATATACAAATCAATTCGGCAATATATATACATATACAAATC
AATTCGACAATGTGTATCTATATAA
Found at i:7078765 original size:37 final size:37
Alignment explanation
Indices: 7078722--7078810 Score: 151
Period size: 37 Copynumber: 2.4 Consensus size: 37
7078712 ATCATAAATA
*
7078722 AATAAACTAATCAATGTTCAAACTTTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
*
7078759 ATTAAACTAATCAATGTTAAAACTTTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
*
7078796 AATGAACTAATCAAT
1 AATAAACTAATCAAT
7078811 ATATTTATAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.35
Consensus pattern (37 bp):
AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
Found at i:7078890 original size:33 final size:33
Alignment explanation
Indices: 7078853--7078928 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
7078843 TTAAAACTTG
*
7078853 AATTATACATATACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
7078886 AATTATACATACACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
7078919 AATTATACAT
1 AATTATACAT
7078929 GCTTTATAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (33 bp):
AATTATACATACACCAACAATTAATTTTAGGTC
Found at i:7082151 original size:92 final size:92
Alignment explanation
Indices: 7081994--7082187 Score: 275
Period size: 92 Copynumber: 2.1 Consensus size: 92
7081984 TTGATTTTAG
* * * *
7081994 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAACAATTTATCATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
* *
7082059 ATTTAATAATAATTATTTTAAATTGTA
66 ATGTAATAATAATTATTTTAAATTATA
*
7082086 TAAATTCATATAAGAA-AATTTATCATCAAGAATTTTATGAAATT-TAATATTAATTATTAAATT
1 TAAATTCATATAAGAACAATTTATCATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATT
*
7082149 ATATGTAATAATTATTATTTTAAATTATA
64 ATATGTAATAATAATTATTTTAAATTATA
*
7082178 CAAATTCATA
1 TAAATTCATA
7082188 AAATATAATT
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
90 1 0.01
91 28 0.31
92 62 0.68
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (92 bp):
TAAATTCATATAAGAACAATTTATCATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
ATGTAATAATAATTATTTTAAATTATA
Found at i:7082157 original size:24 final size:25
Alignment explanation
Indices: 7082130--7082177 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
7082120 TTATGAAATT
7082130 TAAT-ATTAATTA-TTAAATTATATG
1 TAATAATT-ATTATTTAAATTATATG
7082154 TAATAATTATTATTTTAAATTATA
1 TAATAATTATTA-TTTAAATTATA
7082178 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATAATTATTATTTAAATTATATG
Found at i:7082331 original size:66 final size:63
Alignment explanation
Indices: 7082256--7082466 Score: 176
Period size: 66 Copynumber: 3.4 Consensus size: 63
7082246 AAATATATTT
7082256 AATATTAATTATTTCAAATTTTCATTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTTT-ATTTA-AGTATCATATATTATGATTTGAGTAAATTCATATAA
7082321 G
63 G
* * * * **
7082322 AATATTAATTATTAAGAATTTTA-TTAA--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTTTATTTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
*
7082376 AATAATT-GTTATGTT-AATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATAT
1 AAT-ATTAATTAT-TTAAATTT-TA-TTTA-AGTATCATATATTATGATTTGAGTAAATTCATAT
7082439 AAG
61 AAG
*
7082442 AATATTAATTATTAAGAATTTTATT
1 AATATTAATTATTTA-AATTTTATT
7082467 AAATTATATA
Statistics
Matches: 111, Mismatches: 15, Indels: 39
0.67 0.09 0.24
Matches are distributed among these distances:
53 5 0.05
54 9 0.08
55 8 0.07
56 4 0.04
57 3 0.03
58 1 0.01
59 10 0.09
60 8 0.07
61 10 0.09
62 1 0.01
63 3 0.03
64 4 0.04
65 12 0.11
66 28 0.25
67 5 0.05
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (63 bp):
AATATTAATTATTTAAATTTTATTTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:7082356 original size:120 final size:120
Alignment explanation
Indices: 7082218--7082510 Score: 468
Period size: 120 Copynumber: 2.4 Consensus size: 120
7082208 AATTATTTTA
* *
7082218 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATATTAATTATGTT--AATTTAT-AT
*
7082280 TTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
63 TTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
7082338 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATT-GTTATGTTAATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAAT-ATTAATTATGTTAATTTATATTT
7082402 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
7082458 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTGTGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATATTAATTATGTT
7082511 TAAATATGAT
Statistics
Matches: 161, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
119 8 0.05
120 148 0.92
121 5 0.03
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATATTAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:7082498 original size:15 final size:15
Alignment explanation
Indices: 7082463--7082504 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7082453 TTAAGAATTT
*
7082463 TATTAAATTAT-ATA
1 TATTTAATTATAATA
7082477 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
7082491 TATTTAATAATAAT
1 TATTTAATTATAAT
7082505 TGTGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:7082732 original size:156 final size:157
Alignment explanation
Indices: 7082447--7082762 Score: 546
Period size: 156 Copynumber: 2.0 Consensus size: 157
7082437 ATAAGAATAT
* *
7082447 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTGTGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* *
7082512 AAATATGATTAAATCATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATCATTTATTATTGATAATAATAATCTCATTAAAATTTAAATAACAATAACAA
*
7082577 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
7082604 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATA-ATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
7082668 AAATATGATTAAAAT-ATTTATTATTGATAATAATAATGTCATTAAAATTTAAATAACAATAACA
66 AAATATGATT-AAATCATTTATTATTGATAATAATAATCTCATTAAAATTTAAATAACAATAACA
*
7082732 ATAATCATTTACCAAAACAAATTTATGC
130 ATAATAATTTACCAAAACAAATTTATGC
7082760 TAA
1 TAA
7082763 GGGTATTCTA
Statistics
Matches: 151, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
156 104 0.69
157 47 0.31
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.43
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATCATTTATTATTGATAATAATAATCTCATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:7083891 original size:2 final size:2
Alignment explanation
Indices: 7083880--7083915 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
7083870 AGGGGAAGCT
7083880 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7083916 TAATACGAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7084548 original size:2 final size:2
Alignment explanation
Indices: 7084541--7084574 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7084531 ATTGAATTGA
7084541 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7084575 ATAATTTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7084578 original size:8 final size:9
Alignment explanation
Indices: 7084540--7084579 Score: 55
Period size: 10 Copynumber: 4.3 Consensus size: 9
7084530 GATTGAATTG
7084540 AATATATAT
1 AATATATAT
7084549 ATATATATAT
1 A-ATATATAT
7084559 ATATATATAT
1 A-ATATATAT
7084569 AATATA-AT
1 AATATATAT
7084577 AAT
1 AAT
7084580 TTTGAGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 5 0.17
9 6 0.20
10 19 0.63
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AATATATAT
Done.