Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 26 of 198
Found at i:7562638 original size:23 final size:23
Alignment explanation
Indices: 7562608--7562666 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
7562598 CTGAGATGAT
* *
7562608 AAACGGTAAGCTCTATCGAGCTA
1 AAACGGTAAGCTCCATAGAGCTA
* *
7562631 AAACGGTAAGCTCCGTAGAGCTG
1 AAACGGTAAGCTCCATAGAGCTA
7562654 AAACGGTAAGCTC
1 AAACGGTAAGCTC
7562667 ATACAAGCTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (23 bp):
AAACGGTAAGCTCCATAGAGCTA
Found at i:7562675 original size:23 final size:22
Alignment explanation
Indices: 7562608--7562676 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 22
7562598 CTGAGATGAT
*
7562608 AAACGGTAAGCTCTATCGAGCTA
1 AAACGGTAAGCTCTA-CGAGCTG
7562631 AAACGGTAAGCTCCGTA-GAGCTG
1 AAACGGTAAGCT-C-TACGAGCTG
*
7562654 AAACGGTAAGCTCATACAAGCTG
1 AAACGGTAAGCTC-TACGAGCTG
7562677 GGGTGAGTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
22 3 0.08
23 34 0.85
24 1 0.03
25 2 0.05
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (22 bp):
AAACGGTAAGCTCTACGAGCTG
Found at i:7569574 original size:7 final size:7
Alignment explanation
Indices: 7569562--7569593 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
7569552 TTAAAAACTT
7569562 AATTAAC
1 AATTAAC
7569569 AATTAAC
1 AATTAAC
7569576 AATTAAC
1 AATTAAC
7569583 AATTAAC
1 AATTAAC
7569590 AATT
1 AATT
7569594 CAATGTCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (7 bp):
AATTAAC
Found at i:7572654 original size:106 final size:107
Alignment explanation
Indices: 7572494--7572714 Score: 284
Period size: 106 Copynumber: 2.1 Consensus size: 107
7572484 CCAAGCATCA
* * * * *
7572494 AAGCTAAAATATCGGAACAAGGGAGGTCTGTCTTGAGACTCAGTCTCCAGACTTGAGAAGTTATG
1 AAGCAAAAATAGCGAAACAAGGGAGGTCTGTCTTGAGACTCAGTCTCCAAACTTGAGAAGTCATG
* * * * *
7572559 TTTTGAGACATGGATTTCAATG-TTCGAGACATGTCAACATTG
66 TCTTGAGAAATAGATTTCAATGCTT-GAGACATGTCAAAATCG
* **
7572601 AAGCAAAAATAGCGAAAC-AGGGAGGTCTGTCTTGAGACTGAGTCTTTAAACTTGAGAAGTCATG
1 AAGCAAAAATAGCGAAACAAGGGAGGTCTGTCTTGAGACTCAGTCTCCAAACTTGAGAAGTCATG
* *
7572665 TCTTGAGAAATAGATTTCAATGCTTGATACGTGTCAAAATCG
66 TCTTGAGAAATAGATTTCAATGCTTGAGACATGTCAAAATCG
7572707 AAGCAAAA
1 AAGCAAAA
7572715 TTTCTAGAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
106 81 0.83
107 17 0.17
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (107 bp):
AAGCAAAAATAGCGAAACAAGGGAGGTCTGTCTTGAGACTCAGTCTCCAAACTTGAGAAGTCATG
TCTTGAGAAATAGATTTCAATGCTTGAGACATGTCAAAATCG
Found at i:7578627 original size:7 final size:7
Alignment explanation
Indices: 7578617--7578642 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7578607 CGTATACCTA
7578617 ATACCAT
1 ATACCAT
7578624 ATACCAT
1 ATACCAT
7578631 ATACCAT
1 ATACCAT
7578638 ATACC
1 ATACC
7578643 TTACTGCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.31, G:0.00, T:0.27
Consensus pattern (7 bp):
ATACCAT
Found at i:7578628 original size:14 final size:15
Alignment explanation
Indices: 7578609--7578643 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
7578599 TCTTACAGCG
7578609 TATACCTA-ATACCA
1 TATACCTATATACCA
7578623 TATACC-ATATACCA
1 TATACCTATATACCA
7578637 TATACCT
1 TATACCT
7578644 TACTGCCATG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 18 0.95
ACGTcount: A:0.40, C:0.29, G:0.00, T:0.31
Consensus pattern (15 bp):
TATACCTATATACCA
Found at i:7580436 original size:15 final size:17
Alignment explanation
Indices: 7580418--7580449 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
7580408 CCAAAACATC
7580418 AAAAGAA-AAAG-TAAG
1 AAAAGAAGAAAGCTAAG
7580433 AAAAGAAGAAAGCTAAG
1 AAAAGAAGAAAGCTAAG
7580450 TTCAGCCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.69, C:0.03, G:0.22, T:0.06
Consensus pattern (17 bp):
AAAAGAAGAAAGCTAAG
Found at i:7581220 original size:28 final size:28
Alignment explanation
Indices: 7581180--7581279 Score: 146
Period size: 28 Copynumber: 3.6 Consensus size: 28
7581170 TTGACTTTCG
7581180 ACACTAAGTGTGCGAATTTAATTGTAAA
1 ACACTAAGTGTGCGAATTTAATTGTAAA
*
7581208 ACACTAAGTGTGCGAGTTTAATTGTAAA
1 ACACTAAGTGTGCGAATTTAATTGTAAA
* * * *
7581236 GCACTAAGTGTGCGAGTTTAATGGCAAA
1 ACACTAAGTGTGCGAATTTAATTGTAAA
*
7581264 GCACTAAGTGTGCGAA
1 ACACTAAGTGTGCGAA
7581280 CTTATTAAAT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (28 bp):
ACACTAAGTGTGCGAATTTAATTGTAAA
Found at i:7582086 original size:23 final size:23
Alignment explanation
Indices: 7582059--7582611 Score: 382
Period size: 23 Copynumber: 23.6 Consensus size: 23
7582049 TTATGCTTAA
*
7582059 ATGCTGTCCAATTTGTTGTATTT
1 ATGCTGTCCAATTTGTTGTATAT
* *
7582082 ATGCTGCCCAAATTGTTGTATAT
1 ATGCTGTCCAATTTGTTGTATAT
* * * *
7582105 ATCCTGTCCAATTTAGATGTAAAA
1 ATGCTGTCCAATTT-GTTGTATAT
* * *
7582129 ATGCTGTTCAATTTGGTATATAT
1 ATGCTGTCCAATTTGTTGTATAT
* * * *
7582152 ATGCTGCCCAAATTGTTGCACAT
1 ATGCTGTCCAATTTGTTGTATAT
** * * *
7582175 ATGCAATCAAATTTTTATGCTA-AA
1 ATGCTGTCCAATTTGT-TG-TATAT
*
7582199 ATGCTGTCCAATTTGTTGTATTT
1 ATGCTGTCCAATTTGTTGTATAT
* * * *
7582222 ATGCTGCCCAAATTGGTGCATAT
1 ATGCTGTCCAATTTGTTGTATAT
* * *
7582245 ATGCTGTCAAATTTTTATGCTA-AA
1 ATGCTGTCCAATTTGT-TG-TATAT
* *
7582269 ATGCTGTCCAACTTGTTGTATTT
1 ATGCTGTCCAATTTGTTGTATAT
* * *
7582292 ATGCTGCCCAAATTGTTGCATAT
1 ATGCTGTCCAATTTGTTGTATAT
* *
7582315 ATGCTGTCCAATTTTTATGCT-TAA
1 ATGCTGTCCAATTTGT-TG-TATAT
* *
7582339 ATGCTGCCCAATTTTGTTGTATTT
1 ATGCTGTCCAA-TTTGTTGTATAT
* * *
7582363 ATGCTGCCCAAATTGTTGCATAT
1 ATGCTGTCCAATTTGTTGTATAT
* *
7582386 ATGCTGTCCAATTTTTATGCT-TAA
1 ATGCTGTCCAATTTGT-TG-TATAT
* *
7582410 ATGCTGCCCAATTTGTTGTATTT
1 ATGCTGTCCAATTTGTTGTATAT
* *
7582433 ATGCTGCCCAAATTGTTGTATAT
1 ATGCTGTCCAATTTGTTGTATAT
* * *
7582456 ATGCTGTCCAATTTTGATGTAAAA
1 ATGCTGTCCAA-TTTGTTGTATAT
* *
7582480 ATGCTG-CTCAATTTGGTATATAAAT
1 ATGCTGTC-CAATTT-GT-TGTATAT
* * *
7582505 AGGCTGCCCAAATTGTTGTATAT
1 ATGCTGTCCAATTTGTTGTATAT
* *
7582528 ATGCTGTCCAATTTTTATGCTA-AA
1 ATGCTGTCCAATTTGT-TG-TATAT
*
7582552 ATGCTG-CTCAATTTGATGTATAT
1 ATGCTGTC-CAATTTGTTGTATAT
* *
7582575 ATGCTGCCCAAATTGTTGTATAT
1 ATGCTGTCCAATTTGTTGTATAT
7582598 ATGCTGTCCAATTT
1 ATGCTGTCCAATTT
7582612 TTGGTGTGAA
Statistics
Matches: 402, Mismatches: 104, Indels: 48
0.73 0.19 0.09
Matches are distributed among these distances:
22 7 0.02
23 240 0.60
24 131 0.33
25 23 0.06
26 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.41
Consensus pattern (23 bp):
ATGCTGTCCAATTTGTTGTATAT
Found at i:7582132 original size:70 final size:70
Alignment explanation
Indices: 7582044--7582630 Score: 779
Period size: 70 Copynumber: 8.3 Consensus size: 70
7582034 ATGTTCATGT
* * *
7582044 AATTTTTATGCTTAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATATCC
1 AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
7582109 TGTCC
66 TGTCC
** * * * * *
7582114 AATTTAGATG-TAAAAATGCTGTTCAATTTGGTATATATATGCTGCCCAAATTGTTGCACATATG
1 AATTTTTATGCT-AAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATG
** *
7582178 CAATCA
65 CTGTCC
*
7582184 AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGGTGCATATATGC
1 AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
*
7582249 TGTCA
66 TGTCC
*
7582254 AATTTTTATGCTAAAATGCTGTCCAACTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
1 AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
7582319 TGTCC
66 TGTCC
* *
7582324 AATTTTTATGCTTAAATGCTGCCCAATTTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATG
1 AATTTTTATGCTAAAATGCTGTCCAA-TTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATG
7582389 CTGTCC
65 CTGTCC
* * *
7582395 AATTTTTATGCTTAAATGCTGCCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATATGC
1 AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
7582460 TGTCC
66 TGTCC
* * ** * *
7582465 AATTTTGATG-TAAAAATGCTG-CTCAATTTGGTATATAAATAGGCTGCCCAAATTGTTGTATAT
1 AATTTTTATGCT-AAAATGCTGTC-CAATTT-GT-TGTATTTATGCTGCCCAAATTGTTGCATAT
7582528 ATGCTGTCC
62 ATGCTGTCC
* * *
7582537 AATTTTTATGCTAAAATGCTG-CTCAATTTGATGTATATATGCTGCCCAAATTGTTGTATATATG
1 AATTTTTATGCTAAAATGCTGTC-CAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATG
7582601 CTGTCC
65 CTGTCC
*
7582607 AATTTTTGGTG-TGAAAATGCTGTC
1 AATTTTT-ATGCT-AAAATGCTGTC
7582631 TAGTTTGGTA
Statistics
Matches: 464, Mismatches: 42, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
69 3 0.01
70 314 0.68
71 84 0.18
72 62 0.13
73 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.41
Consensus pattern (70 bp):
AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
TGTCC
Found at i:7582297 original size:47 final size:47
Alignment explanation
Indices: 7582222--7582580 Score: 218
Period size: 47 Copynumber: 7.6 Consensus size: 47
7582212 TGTTGTATTT
* * *
7582222 ATGCTGCCCAAATTGGTGCATATATGCTGTCAAATTTTTATGCTAAA
1 ATGCTGCCCAATTTGTTGTATATATGCTGTCAAATTTTTATGCTAAA
* * * * * *
7582269 ATGCTGTCCAACTTGTTGTATTTATGCTGCCCAAA-TTGT-TGC-ATAT
1 ATGCTGCCCAATTTGTTGTATATATGCTG-TCAAATTTTTATGCTA-AA
* * * * * **
7582315 ATGCTGTCCAATTTTTATGCT-TAAATGCTGCCCAATTTTGT-TG-TATTT
1 ATGCTGCCCAATTTGT-TG-TATATATGCTGTCAAATTTT-TATGCTA-AA
* * * *
7582363 ATGCTGCCCAAATTGTTGCATATATGCTGTCCAATTTTTATGCTTAA
1 ATGCTGCCCAATTTGTTGTATATATGCTGTCAAATTTTTATGCTAAA
* * * *
7582410 ATGCTGCCCAATTTGTTGTATTTATGCTGCCCAAA-TTGT-TG-TATAT
1 ATGCTGCCCAATTTGTTGTATATATGCTG-TCAAATTTTTATGCTA-AA
* * * * * *
7582456 ATGCTGTCCAATTTTGATGTAAAAATGCTGCTC-AATTTGGTAT-ATAAA
1 ATGCTGCCCAA-TTTGTTGTATATATGCTG-TCAAATTT-TTATGCTAAA
* * *
7582504 TAGGCTGCCCAAATTGTTGTATATATGCTGTCCAATTTTTATGCTAAA
1 -ATGCTGCCCAATTTGTTGTATATATGCTGTCAAATTTTTATGCTAAA
* *
7582552 ATGCTGCTCAATTTGATGTATATATGCTG
1 ATGCTGCCCAATTTGTTGTATATATGCTG
7582581 CCCAAATTGT
Statistics
Matches: 241, Mismatches: 51, Indels: 40
0.73 0.15 0.12
Matches are distributed among these distances:
45 2 0.01
46 38 0.16
47 135 0.56
48 54 0.22
49 12 0.05
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.41
Consensus pattern (47 bp):
ATGCTGCCCAATTTGTTGTATATATGCTGTCAAATTTTTATGCTAAA
Found at i:7582715 original size:142 final size:141
Alignment explanation
Indices: 7582126--7582680 Score: 437
Period size: 141 Copynumber: 3.9 Consensus size: 141
7582116 TTTAGATGTA
* * * * * * ** * *
7582126 AAAATGCTGTTCAATTTGGTATATATATGCTGCCCAAATTGTTGCACATATGCAATCAAATTTTT
1 AAAATGCTGCTCAATATGATGTATATATGCTGCCCAAATTGTTGTATATATGCTGTCCAATTTTG
* * ** * * * * *
7582191 ATGCT-AAAATGCTG-TCCAATTTGTTGTATTTAT-GCTGCCCAAATTGGTGCATATATGCTGT-
66 ATG-TAAAAATGCTGCT-CAATTTGGTATATAAATAGCTGCCCAAATTGATGTAAAAAGGCTGTC
**
7582252 CAAATTTTTATGCT
129 CAAA-TGGTATGCT
* * *
7582266 AAAATGCTG-TCCAACT-TGTTGTATTTATGCTGCCCAAATTGTTGCATATATGCTGTCCAATTT
1 AAAATGCTGCT-CAA-TATGATGTATATATGCTGCCCAAATTGTTGTATATATGCTGTCCAATTT
* * * * * ** * * * * *
7582329 TTATGCT-TAAATGCTGCCCAATTTTGT-TGTATTTATGCTGCCCAAATTGTTGCATATATGCTG
64 TGATG-TAAAAATGCTGCTCAATTTGGTATATAAATA-GCTGCCCAAATTGATGTAAAAAGGCTG
* **
7582392 TCCAATTTTTATGCT
127 TCCAAATGGTATGCT
* * * * *
7582407 TAAATGCTGCCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATATGCTGTCCAATTTTG
1 AAAATGCTGCTCAATATGATGTATATATGCTGCCCAAATTGTTGTATATATGCTGTCCAATTTTG
* * * *
7582472 ATGTAAAAATGCTGCTCAATTTGGTATATAAATAGGCTGCCCAAATTGTTGTATATATGCTGTCC
66 ATGTAAAAATGCTGCTCAATTTGGTATATAAATA-GCTGCCCAAATTGATGTAAAAAGGCTGTCC
* **
7582537 AATTTTTATGCT
130 AAATGGTATGCT
*
7582549 AAAATGCTGCTCAATTTGATGTATATATGCTGCCCAAATTGTTGTATATATGCTGTCCAATTTTT
1 AAAATGCTGCTCAATATGATGTATATATGCTGCCCAAATTGTTGTATATATGCTGTCCAA-TTTT
* * * * *
7582614 GGTGTGAAAATGCTG-TCTAGTTTGGTATATGAAT-GCTGTCCAAATTGATGTAAAAAGGCTGTC
65 GATGTAAAAATGCTGCTC-AATTTGGTATATAAATAGCTGCCCAAATTGATGTAAAAAGGCTGTC
7582677 CAAA
129 CAAA
7582681 CATGGTAGAT
Statistics
Matches: 361, Mismatches: 42, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
139 5 0.01
140 76 0.21
141 142 0.39
142 107 0.30
143 31 0.09
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (141 bp):
AAAATGCTGCTCAATATGATGTATATATGCTGCCCAAATTGTTGTATATATGCTGTCCAATTTTG
ATGTAAAAATGCTGCTCAATTTGGTATATAAATAGCTGCCCAAATTGATGTAAAAAGGCTGTCCA
AATGGTATGCT
Found at i:7588315 original size:15 final size:17
Alignment explanation
Indices: 7588297--7588328 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
7588287 CCAAAACATC
7588297 AAAAGAA-AAAG-TAAG
1 AAAAGAAGAAAGCTAAG
7588312 AAAAGAAGAAAGCTAAG
1 AAAAGAAGAAAGCTAAG
7588329 TTCGGCCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.69, C:0.03, G:0.22, T:0.06
Consensus pattern (17 bp):
AAAAGAAGAAAGCTAAG
Found at i:7589096 original size:28 final size:28
Alignment explanation
Indices: 7589064--7589161 Score: 142
Period size: 28 Copynumber: 3.5 Consensus size: 28
7589054 TGACTTTCGA
7589064 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* *
7589092 CACTAAGTGTGCGAGTTTAATGGCAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* * **
7589120 CACTAAGTGTGCGAGTTTGATTATTGAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
7589148 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
7589162 ACTTATTAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:7589909 original size:23 final size:23
Alignment explanation
Indices: 7589882--7590001 Score: 89
Period size: 23 Copynumber: 5.2 Consensus size: 23
7589872 TTATGCTTAA
* *
7589882 ATGCTATCCAATTTGTTGTATTT
1 ATGCTGTCCAATTTGTTGTATAT
* *
7589905 ATGCTGCCCAAATTGTTGTATAT
1 ATGCTGTCCAATTTGTTGTATAT
** * *
7589928 ATGCTGTCCAATTTAAATGTAAAA
1 ATGCTGTCCAATTT-GTTGTATAT
* *
7589952 ATGCTG-CTCAATTTGGTATATAT
1 ATGCTGTC-CAATTTGTTGTATAT
* * * *
7589975 ATGCTGCCCAAATTGTTGCACAT
1 ATGCTGTCCAATTTGTTGTATAT
7589998 ATGC
1 ATGC
7590002 AATCAAATTT
Statistics
Matches: 74, Mismatches: 20, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
23 56 0.76
24 18 0.24
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (23 bp):
ATGCTGTCCAATTTGTTGTATAT
Found at i:7590168 original size:25 final size:25
Alignment explanation
Indices: 7590139--7590186 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
7590129 GTGCATAAAT
* *
7590139 GCTGCTCAATTTGGTATATATATAG
1 GCTGCCCAAATTGGTATATATATAG
* *
7590164 GCTGCCCAAATTGTTGTATATAT
1 GCTGCCCAAATTGGTATATATAT
7590187 GCTGTCCAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.40
Consensus pattern (25 bp):
GCTGCCCAAATTGGTATATATATAG
Found at i:7590190 original size:23 final size:23
Alignment explanation
Indices: 7590120--7590265 Score: 105
Period size: 23 Copynumber: 6.2 Consensus size: 23
7590110 NNNNNNNNNN
* * *
7590120 CCCAAATTGGTGCATAAATGCTG
1 CCCAAATTGTTGTATATATGCTG
* * * *
7590143 CTCAATTTGGTATATATATAGGCTG
1 CCCAAATT-GT-TGTATATATGCTG
7590168 CCCAAATTGTTGTATATATGCTG
1 CCCAAATTGTTGTATATATGCTG
* * * *
7590191 TCCAATTTTTATGCTA-AAATGCTG
1 CCCAAATTGT-TG-TATATATGCTG
* * *
7590215 CTCAATTTGATGTATATATGCTG
1 CCCAAATTGTTGTATATATGCTG
*
7590238 CCCAAACTGTTGTATATATGCTG
1 CCCAAATTGTTGTATATATGCTG
*
7590261 TCCAA
1 CCCAA
7590266 TTTTTGGTGT
Statistics
Matches: 93, Mismatches: 25, Indels: 10
0.73 0.20 0.08
Matches are distributed among these distances:
22 2 0.02
23 56 0.60
24 18 0.19
25 17 0.18
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (23 bp):
CCCAAATTGTTGTATATATGCTG
Found at i:7590256 original size:72 final size:72
Alignment explanation
Indices: 7590135--7590300 Score: 232
Period size: 70 Copynumber: 2.3 Consensus size: 72
7590125 ATTGGTGCAT
*
7590135 AAATGCTGCTCAATTTGGTATATATATAGGCTGCCCAAATTGTTGTATATATGCTGTCCAATTTT
1 AAATGCTGCTCAATTTGGTATATATATAGGCTGCCCAAACTGTTGTATATATGCTGTCCAATTTT
7590200 TATGCTA
66 TATGCTA
* *
7590207 AAATGCTGCTCAATTT-G-ATGTATATATGCTGCCCAAACTGTTGTATATATGCTGTCCAATTTT
1 AAATGCTGCTCAATTTGGTATATATATAGGCTGCCCAAACTGTTGTATATATGCTGTCCAATTTT
*
7590270 TGGTG-TGA
66 T-ATGCT-A
*
7590278 AAATGCTG-TCTAGTTTGGTATAT
1 AAATGCTGCTC-AATTTGGTATAT
7590301 GAATGCTGTC
Statistics
Matches: 83, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
70 47 0.57
71 16 0.19
72 17 0.20
73 3 0.04
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (72 bp):
AAATGCTGCTCAATTTGGTATATATATAGGCTGCCCAAACTGTTGTATATATGCTGTCCAATTTT
TATGCTA
Found at i:7602322 original size:15 final size:15
Alignment explanation
Indices: 7602302--7602330 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7602292 AGTTGCAACC
7602302 TCAAATGCAACTCCT
1 TCAAATGCAACTCCT
7602317 TCAAATGCAACTCC
1 TCAAATGCAACTCC
7602331 AAGAACGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.34, G:0.07, T:0.24
Consensus pattern (15 bp):
TCAAATGCAACTCCT
Found at i:7607942 original size:18 final size:18
Alignment explanation
Indices: 7607919--7607954 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
7607909 TAAAATATAC
7607919 TCTCTATTTGTT-TTTTAT
1 TCTCTATTT-TTATTTTAT
7607937 TCTCTATTTTTATTTTAT
1 TCTCTATTTTTATTTTAT
7607955 AACAGTAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 15 0.88
ACGTcount: A:0.14, C:0.11, G:0.03, T:0.72
Consensus pattern (18 bp):
TCTCTATTTTTATTTTAT
Found at i:7608222 original size:25 final size:25
Alignment explanation
Indices: 7608188--7608238 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
7608178 TATTTCTTAA
7608188 TTATCCTTAATGAAATTAACTCAAG
1 TTATCCTTAATGAAATTAACTCAAG
7608213 TTATCCTTAATGAAATTAACTCAAG
1 TTATCCTTAATGAAATTAACTCAAG
7608238 T
1 T
7608239 AACTCATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (25 bp):
TTATCCTTAATGAAATTAACTCAAG
Found at i:7613182 original size:123 final size:124
Alignment explanation
Indices: 7613001--7613254 Score: 386
Period size: 123 Copynumber: 2.1 Consensus size: 124
7612991 AAATAGTGGG
** * * *
7613001 AAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCGTGGCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGGATGCTATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATT
*
7613066 TCGCTAC-AGTGGTCATGTAAAAAATAATTTTTTTTGACGTTTTCTGAGCAAATAGTATA
66 TCGCTACAAGTGGTCATGTAAAAAATAAATTTTTTTGACG-TTTCTGAGCAAATAGTATA
7613125 AAATCGCTGATACCAGGATG-TATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGGATGCTATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATT
* ** * *
7613189 TCGCTACAATTGGTCATGTAGGAAATAAATTTTTTTGACGTTTCTGAGCAAATAGTGTC
66 TCGCTACAAGTGGTCATGTAAAAAATAAATTTTTTTGACGTTTCTGAGCAAATAGTATA
7613248 AAATCGC
1 AAATCGC
7613255 GCCCTCATGG
Statistics
Matches: 118, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
123 72 0.61
124 46 0.39
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.31
Consensus pattern (124 bp):
AAATCGCTGATACCAGGATGCTATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATT
TCGCTACAAGTGGTCATGTAAAAAATAAATTTTTTTGACGTTTCTGAGCAAATAGTATA
Found at i:7614424 original size:28 final size:28
Alignment explanation
Indices: 7614387--7615095 Score: 788
Period size: 28 Copynumber: 26.8 Consensus size: 28
7614377 AAACAGCGTT
*
7614387 AATTAGGTTATGGTTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
7614415 AATTAGGTTAGGGTTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
7614443 AATTAGGTTAGGGTTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
*
7614471 AGTTAGGTTAGGG--TTT--TT-AATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
7614494 AATTAGGTTAGGGTTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
*
7614522 AACTAGGTTAGGGTTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
* *
7614550 AACTAGGTTAGGGTTTTTAATTAAGTT-
1 AATTAGGTTAGGGTTTTTAATTAAATTA
*
7614577 -A--A-GTTAGGGTTTTTAATTAAAATA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
*** *
7614601 GGCTAGGGTTAGGG--TTT--TT-AACTA
1 AATTA-GGTTAGGGTTTTTAATTAAATTA
7614625 AATTAGGTTAGGGTTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
*
7614653 AATTAGGTTAGGGTTTTTAATTAAGTT-
1 AATTAGGTTAGGGTTTTTAATTAAATTA
*
7614680 -A--A-GTTAGGGTTTTTAATTAAAATA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
*** *
7614704 GGCTAGGGTTAGGG--TTT--TT-AACTA
1 AATTA-GGTTAGGGTTTTTAATTAAATTA
7614728 AATTAGGTTAGGGTTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
*
7614756 AATTAGGTTAGGGCTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
*
7614784 AATTAGGTTAGGGTTTTTAATTAAGTT-
1 AATTAGGTTAGGGTTTTTAATTAAATTA
7614811 -A--A-GTTAGGGTTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
7614835 AATTAGGTTAGGGTTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
**
7614863 GGTTAGAGTTAGGGTTTTTAATTAAATTA
1 AATTAG-GTTAGGGTTTTTAATTAAATTA
* *
7614892 AGTTAGGTTAGGGTTTTTAATTAAGTT-
1 AATTAGGTTAGGGTTTTTAATTAAATTA
7614919 -A--A-GTTAGGGTTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
**
7614943 GGTTAGGGTTAGGGTTTTTAATTAAATTA
1 AATTA-GGTTAGGGTTTTTAATTAAATTA
* *
7614972 AGTTAGGTTAGGGTTTTTAATTAAGTT-
1 AATTAGGTTAGGGTTTTTAATTAAATTA
7614999 -A--A-GTTAGGGTTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
* *
7615023 AGTTAGGTTAGGGTTTTTAATTAAGTT-
1 AATTAGGTTAGGGTTTTTAATTAAATTA
7615050 -A--A-GTTAGGGTTTTTAATTAAATTA
1 AATTAGGTTAGGGTTTTTAATTAAATTA
**
7615074 GGTTAGGGTTAGGGTTTTTAAT
1 AATTA-GGTTAGGGTTTTTAAT
7615096 CAACTAACGT
Statistics
Matches: 589, Mismatches: 42, Indels: 99
0.81 0.06 0.14
Matches are distributed among these distances:
23 151 0.26
24 20 0.03
25 14 0.02
26 6 0.01
27 18 0.03
28 298 0.51
29 82 0.14
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.45
Consensus pattern (28 bp):
AATTAGGTTAGGGTTTTTAATTAAATTA
Found at i:7614470 original size:51 final size:51
Alignment explanation
Indices: 7614410--7615095 Score: 750
Period size: 51 Copynumber: 13.1 Consensus size: 51
7614400 TTTTTAATTA
*
7614410 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTT
7614461 AATTAAATTAAGTTAGGTTAGGGTTTTTAATT--A--AA-TTAGGTTAGGGTTTTT
1 AATT--A--AA-TTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTT
**
7614512 AATTAAATTAAACTAGGTTAGGGTTTTTAATTAAATTAAACTAGGTTAGGGTTTTT
1 AATTAAA-T----TAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTT
* * * * *
7614568 AATTAAGTTAAGTTAGGGTTTTTAATTAAAATAGGCTAGGGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAGTTA-GGTTAGGGTTTTT
* *
7614620 AACTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTT
* * * * *
7614671 AATTAAGTTAAGTTAGGGTTTTTAATTAAAATAGGCTAGGGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAGTTA-GGTTAGGGTTTTT
* *
7614723 AACTAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGCTTTTAATT
1 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGG--TTT--TT
*
7614778 AAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAAGTTAGGGTT----TTTAATT
1 -AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAGTTA-GGTTAGGGTTT--TT
*
7614829 AAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTT
1 -AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAGTTAG-GTTAGGGTTTTT
* *
7614882 AATTAAATTAAGTTA-GGTTAGGGTTT--TT-AATTAAGTTAAGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTT----TTTAATTAAATTAAGTTAGGTTAGGGTTTTT
7614933 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTT
1 AATT-AA--A--TTA-GGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTT
* *
7614990 AATTAAGTTAAGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTT
* * *
7615041 AATTAAGTTAAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAGTTA-GGTTAGGGTTTTT
7615093 AAT
1 AAT
7615096 CAACTAACGT
Statistics
Matches: 552, Mismatches: 41, Indels: 83
0.82 0.06 0.12
Matches are distributed among these distances:
47 3 0.01
49 1 0.00
50 1 0.00
51 265 0.48
52 134 0.24
53 9 0.02
54 5 0.01
55 13 0.02
56 83 0.15
57 34 0.06
58 4 0.01
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.45
Consensus pattern (51 bp):
AATTAAATTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTT
Found at i:7617237 original size:14 final size:15
Alignment explanation
Indices: 7617220--7617253 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7617210 AATAAATATC
7617220 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
7617234 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
7617249 TAAAA
1 TAAAA
7617254 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:7617479 original size:22 final size:22
Alignment explanation
Indices: 7617449--7617490 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7617439 ATTTGGAGAT
*
7617449 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
7617471 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
7617491 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:7617498 original size:30 final size:30
Alignment explanation
Indices: 7617462--7617520 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
7617452 TTGAAGGAAA
*
7617462 TTGAGAGGATTTTGGAAGGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGAATTTGAGAGT
7617492 TTGAGAGAATTTTGGAAGGAATTTGAGAG
1 TTGAGAGAATTTTGGAAGGAATTTGAGAG
7617521 AATTTTTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAATTTGAGAGT
Found at i:7617511 original size:52 final size:51
Alignment explanation
Indices: 7617440--7617542 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
7617430 TTAATATGGA
* * *
7617440 TTTGGAGATTTTTTGAAGGAAATTGAGAGGATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAA-TTGAGAG
* *
7617491 TTTGAGAGAATTTTGGAAGGAATTTGAGAGAATTTTTGAACGGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAATTGAGAG
7617543 AATTTTTGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 4 0.09
52 37 0.82
53 4 0.09
ACGTcount: A:0.33, C:0.01, G:0.32, T:0.34
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAATTGAGAG
Found at i:7617516 original size:22 final size:22
Alignment explanation
Indices: 7617491--7617561 Score: 108
Period size: 22 Copynumber: 3.2 Consensus size: 22
7617481 AATTTGAGAG
*
7617491 TTTGAGAGAATTTTGGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
7617513 TTTGAGAGAATTTTTGAACGGAA
1 TTTGAGAGAATTTTTGAA-GGAA
7617536 -TTGAGAGAATTTTTGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
*
7617557 ATTGA
1 TTTGA
7617562 TATTGAATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
21 4 0.09
22 38 0.83
23 4 0.09
ACGTcount: A:0.37, C:0.01, G:0.28, T:0.34
Consensus pattern (22 bp):
TTTGAGAGAATTTTTGAAGGAA
Found at i:7624353 original size:22 final size:22
Alignment explanation
Indices: 7624298--7624341 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
7624288 GCCACCCATT
*
7624298 TTATTTTATTTATTTATTATTTG
1 TTATATTATTTATTT-TTATTTG
7624321 TTATATTATTTATTTTTATTT
1 TTATATTATTTATTTTTATTT
7624342 TACTAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (22 bp):
TTATATTATTTATTTTTATTTG
Found at i:7624369 original size:35 final size:35
Alignment explanation
Indices: 7624304--7624379 Score: 84
Period size: 35 Copynumber: 2.2 Consensus size: 35
7624294 CATTTTATTT
* * *
7624304 TATTTATTTATTATTTGTTATATTATTTATTTTTA
1 TATTTACTAATTATTTGTTATATTATTTATTCTTA
*
7624339 T-TTTACTAATTATTTTGTTTTATT-TATTATTCTTA
1 TATTTACTAATTA-TTTGTTATATTAT-TTATTCTTA
7624374 TATTTA
1 TATTTA
7624380 GATTTTAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
34 10 0.29
35 20 0.59
36 4 0.12
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (35 bp):
TATTTACTAATTATTTGTTATATTATTTATTCTTA
Found at i:7624542 original size:23 final size:23
Alignment explanation
Indices: 7624499--7624542 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7624489 TATTATTTCA
*
7624499 TTTCTTTTTATTTTTTATTTATC
1 TTTCTTTTTATTTTGTATTTATC
7624522 TTTCTTTTTAATTTTGT-TTTA
1 TTTCTTTTT-ATTTTGTATTTA
7624543 GTTGCTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.77
Consensus pattern (23 bp):
TTTCTTTTTATTTTGTATTTATC
Found at i:7640962 original size:19 final size:20
Alignment explanation
Indices: 7640918--7640968 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
7640908 CTAAGCTTGA
*
7640918 AGTACCGATACTTTCTCTTT
1 AGTATCGATACTTTCTCTTT
7640938 -GATATCGATACTTTC-CTTT
1 AG-TATCGATACTTTCTCTTT
7640957 AGTATCGATACT
1 AGTATCGATACT
7640969 ATTTTGGCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.43
Consensus pattern (20 bp):
AGTATCGATACTTTCTCTTT
Found at i:7641445 original size:16 final size:15
Alignment explanation
Indices: 7641413--7641457 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
7641403 TTAAGGTTCA
*
7641413 AATCAA-ATTCTATC
1 AATCAATATTCTACC
7641427 AATCAATATATCTACC
1 AATCAATAT-TCTACC
7641443 AATCAATATTTCTAC
1 AATCAATA-TTCTAC
7641458 ATTCAATGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 6 0.22
15 2 0.07
16 18 0.67
17 1 0.04
ACGTcount: A:0.42, C:0.22, G:0.00, T:0.36
Consensus pattern (15 bp):
AATCAATATTCTACC
Found at i:7643153 original size:26 final size:27
Alignment explanation
Indices: 7643101--7643153 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
7643091 ACCATAGCAC
* *
7643101 AAATCAGTCATTTACCCTCGAGGGGCA
1 AAATCAGTCATTTACCCTCCAGAGGCA
7643128 AAAT-AGTCATTTACCCTCCAGAGGCA
1 AAATCAGTCATTTACCCTCCAGAGGCA
7643154 TTACGGTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (27 bp):
AAATCAGTCATTTACCCTCCAGAGGCA
Found at i:7646527 original size:26 final size:27
Alignment explanation
Indices: 7646471--7646529 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 27
7646461 TTATGGAAAA
* * *
7646471 TTTTCTTTCTTTTTTTCTCTGGTTTTC
1 TTTTCTTCCCTTTTTTCTCTGCTTTTC
7646498 -TTTCTTCCCTTTTTTCTCT-CTTTTC
1 TTTTCTTCCCTTTTTTCTCTGCTTTTC
7646523 TTTTCTT
1 TTTTCTT
7646530 TCTTTCCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 5 0.18
26 23 0.82
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.73
Consensus pattern (27 bp):
TTTTCTTCCCTTTTTTCTCTGCTTTTC
Found at i:7649072 original size:11 final size:12
Alignment explanation
Indices: 7649052--7649077 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7649042 GGCTAGGCTG
7649052 TTTTGTTTTTTT
1 TTTTGTTTTTTT
7649064 TTTTGTTTTTTT
1 TTTTGTTTTTTT
7649076 TT
1 TT
7649078 AAACTGTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (12 bp):
TTTTGTTTTTTT
Found at i:7649875 original size:5 final size:5
Alignment explanation
Indices: 7649865--7649890 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7649855 TGAGCATTCG
7649865 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
7649891 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:7650399 original size:9 final size:9
Alignment explanation
Indices: 7650385--7650421 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
7650375 TATAGTTTGA
7650385 TATTCGAAT
1 TATTCGAAT
7650394 TATTCGAAT
1 TATTCGAAT
*
7650403 TATTCGAGT
1 TATTCGAAT
7650412 TATTCGAAT
1 TATTCGAAT
7650421 T
1 T
7650422 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7656510 original size:18 final size:17
Alignment explanation
Indices: 7656479--7656513 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
7656469 AATTTAGGGT
7656479 TTAAAATTTTTAATTAA
1 TTAAAATTTTTAATTAA
7656496 TTAAAATTATTTAATTAA
1 TTAAAATT-TTTAATTAA
7656514 AAATCTATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTAAAATTTTTAATTAA
Found at i:7657164 original size:24 final size:24
Alignment explanation
Indices: 7657095--7657167 Score: 94
Period size: 24 Copynumber: 3.0 Consensus size: 24
7657085 GGTAAGACAT
* *
7657095 TTTCCACAGCTCCTCTCTTCAACC
1 TTTCCATAGCTCCTCTCTTCACCC
*
7657119 TTTCCACT-GTTCCTCTCTTCACCC
1 TTTCCA-TAGCTCCTCTCTTCACCC
*
7657143 TTTCCATAGCTCCTCTATTCACCC
1 TTTCCATAGCTCCTCTCTTCACCC
7657167 T
1 T
7657168 ATCGATTGCA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
23 1 0.02
24 41 0.98
ACGTcount: A:0.14, C:0.44, G:0.04, T:0.38
Consensus pattern (24 bp):
TTTCCATAGCTCCTCTCTTCACCC
Found at i:7657971 original size:8 final size:8
Alignment explanation
Indices: 7657958--7657990 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
7657948 AATGCCGTTC
7657958 CTGTTGTT
1 CTGTTGTT
7657966 CTGTTGTT
1 CTGTTGTT
7657974 CTGTTGTT
1 CTGTTGTT
7657982 CTGTTGTT
1 CTGTTGTT
7657990 C
1 C
7657991 CTGGTAATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.00, C:0.15, G:0.24, T:0.61
Consensus pattern (8 bp):
CTGTTGTT
Found at i:7662320 original size:28 final size:29
Alignment explanation
Indices: 7662258--7662327 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 29
7662248 AATCAAACAC
7662258 CAGAAAATATTTTCCTGTAAGTCATTTTA
1 CAGAAAATATTTTCCTGTAAGTCATTTTA
7662287 CAGAAAATATTTTCCTGTAA-TCATTTTA
1 CAGAAAATATTTTCCTGTAAGTCATTTTA
* *
7662315 CGGAAAACATTTT
1 CAGAAAATATTTT
7662328 ACTGCCAATC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 19 0.49
29 20 0.51
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (29 bp):
CAGAAAATATTTTCCTGTAAGTCATTTTA
Found at i:7673010 original size:5 final size:5
Alignment explanation
Indices: 7673000--7673035 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
7672990 TGAGCATTCG
7673000 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
7673036 AATTTTCGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:7674052 original size:9 final size:9
Alignment explanation
Indices: 7674038--7674074 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
7674028 ATACTATAGA
7674038 TATTCGAAT
1 TATTCGAAT
7674047 TATTCGAAT
1 TATTCGAAT
*
7674056 TATTCGAGT
1 TATTCGAAT
7674065 TATTCGAAT
1 TATTCGAAT
7674074 T
1 T
7674075 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7674145 original size:9 final size:9
Alignment explanation
Indices: 7674128--7674158 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7674118 TCGAGTTGAT
7674128 TCGAATAAC
1 TCGAATAAC
*
7674137 TCGATTAAC
1 TCGAATAAC
7674146 TCGAATAAC
1 TCGAATAAC
7674155 TCGA
1 TCGA
7674159 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:7677372 original size:27 final size:27
Alignment explanation
Indices: 7677318--7677415 Score: 94
Period size: 27 Copynumber: 3.6 Consensus size: 27
7677308 TCATCGGGAT
* * *
7677318 AGTAAATACAGGATAGTCCATCATGAC
1 AGTAAACACAGGATAGTCCGTCAAGAC
* *
7677345 AGTAAACACAGGGTAGTCCGTTAAGAC
1 AGTAAACACAGGATAGTCCGTCAAGAC
*
7677372 AATAAACAC-GGAATAGTCCG-CAATGAC
1 AGTAAACACAGG-ATAGTCCGTCAA-GAC
7677399 AGTAAACAC-GGAATAGT
1 AGTAAACACAGG-ATAGT
7677416 TCACTGGGAT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 4 0.07
27 56 0.93
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.18
Consensus pattern (27 bp):
AGTAAACACAGGATAGTCCGTCAAGAC
Found at i:7677456 original size:27 final size:27
Alignment explanation
Indices: 7677368--7677464 Score: 92
Period size: 27 Copynumber: 3.6 Consensus size: 27
7677358 TAGTCCGTTA
* *
7677368 AGACAATAAACACGGAATAGTCCG-CA
1 AGACAATAAACACGGAATAGTCTGCCG
*
7677394 ATGACAGTAAACACGGAATAGT-T-CACTG
1 A-GACAATAAACACGGAATAGTCTGC-C-G
* * *
7677422 GGATAATAAACACGGGATAGTCTGCCG
1 AGACAATAAACACGGAATAGTCTGCCG
7677449 AGACAATAAACACGGA
1 AGACAATAAACACGGA
7677465 GAAGTCCATC
Statistics
Matches: 55, Mismatches: 10, Indels: 11
0.72 0.13 0.14
Matches are distributed among these distances:
26 1 0.02
27 51 0.93
28 2 0.04
29 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.15
Consensus pattern (27 bp):
AGACAATAAACACGGAATAGTCTGCCG
Found at i:7681321 original size:8 final size:8
Alignment explanation
Indices: 7681303--7681530 Score: 50
Period size: 8 Copynumber: 26.4 Consensus size: 8
7681293 TCTTTTTGAA
7681303 TTTATATTT
1 TTTA-ATTT
7681312 TTTAATTT
1 TTTAATTT
*
7681320 TTTTATATT
1 TTTAAT-TT
* *
7681329 TTCATTTT
1 TTTAATTT
7681337 TTGTAATTT
1 TT-TAATTT
*
7681346 TCTAAATTT
1 T-TTAATTT
*
7681355 TTAACTATTTT
1 TT---TAATTT
7681366 TTTAA-TT
1 TTTAATTT
*
7681373 TTTATTTT
1 TTTAATTT
7681381 TTTCGAAATTT
1 TTT---AATTT
*
7681392 TTTTATTT
1 TTTAATTT
* *
7681400 GTTCATTTTT
1 -TTTA-ATTT
7681410 TTGTAATTT
1 TT-TAATTT
* *
7681419 TCTAAATT
1 TTTAATTT
7681427 TTTAACTATT
1 TTTAA-T-TT
*
7681437 TTTTA-TT
1 TTTAATTT
7681444 TTT-ATTT
1 TTTAATTT
*
7681451 TTGAATTAT
1 TTTAATT-T
*
7681460 ATATTCATTT
1 -T-TTAATTT
*
7681470 TTGAATTT
1 TTTAATTT
**
7681478 TTT-ATAA
1 TTTAATTT
**
7681485 TAAATATTT
1 TTTA-ATTT
7681494 TTTAATTT
1 TTTAATTT
*
7681502 TGTTTATTT
1 T-TTAATTT
*
7681511 TTTAAATT
1 TTTAATTT
7681519 TTTAAGTTT
1 TTTAA-TTT
7681528 TTT
1 TTT
7681531 TGAAAAAAAT
Statistics
Matches: 154, Mismatches: 41, Indels: 48
0.63 0.17 0.20
Matches are distributed among these distances:
6 1 0.01
7 18 0.12
8 59 0.38
9 46 0.30
10 13 0.08
11 17 0.11
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (8 bp):
TTTAATTT
Found at i:7681356 original size:19 final size:17
Alignment explanation
Indices: 7681315--7681429 Score: 56
Period size: 19 Copynumber: 6.4 Consensus size: 17
7681305 TATATTTTTT
7681315 AATTTTTTTATATTT-T-
1 AATTTTTTTAT-TTTCTA
*
7681331 CATTTTTTGTAATTTTCTA
1 AATTTTTT-T-ATTTTCTA
* * *
7681350 AATTTTTAACTATTTTTTT
1 AATTTTT--TTATTTTCTA
* *
7681369 AATTTTTATTTTTTTCGA
1 AATTTTT-TTATTTTCTA
*
7681387 AATTTTTTTATTTGT-TC
1 AATTTTTTTATTT-TCTA
*
7681404 ATTTTTTTGTAATTTTCTA
1 AATTTTTT-T-ATTTTCTA
7681423 AATTTTT
1 AATTTTT
7681430 AACTATTTTT
Statistics
Matches: 73, Mismatches: 16, Indels: 17
0.69 0.15 0.16
Matches are distributed among these distances:
16 7 0.10
17 16 0.22
18 19 0.26
19 30 0.41
20 1 0.01
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (17 bp):
AATTTTTTTATTTTCTA
Found at i:7681391 original size:27 final size:26
Alignment explanation
Indices: 7681361--7681430 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 26
7681351 ATTTTTAACT
7681361 ATTTTTTTAATTTTTATTTTTTTCGAA
1 ATTTTTTTAATTTTTATTTTTTT-GAA
*
7681388 ATTTTTTT-ATTTGTTCATTTTTTTGTA
1 ATTTTTTTAATTT-TT-ATTTTTTTGAA
* *
7681415 ATTTTCTAAATTTTTA
1 ATTTTTTTAATTTTTA
7681431 ACTATTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
26 5 0.14
27 20 0.54
28 12 0.32
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.70
Consensus pattern (26 bp):
ATTTTTTTAATTTTTATTTTTTTGAA
Found at i:7681415 original size:73 final size:70
Alignment explanation
Indices: 7681315--7681452 Score: 233
Period size: 73 Copynumber: 1.9 Consensus size: 70
7681305 TATATTTTTT
7681315 AATTTTTTTATATTTTCATTTTTTGTAATTTTCTAAATTTTTAACTATTTTTTTAATTTTTATTT
1 AATTTTTTTATATTTTCATTTTTTGTAATTTTCTAAATTTTTAACTA-TTTTTT-ATTTTTATTT
7681380 TTTTCGA
64 TTTTCGA
7681387 AATTTTTTTAT-TTGTTCATTTTTTTGTAATTTTCTAAATTTTTAACTATTTTTTATTTTTATTT
1 AATTTTTTTATATT-TTCA-TTTTTTGTAATTTTCTAAATTTTTAACTATTTTTTATTTTTATTT
7681451 TT
64 TT
7681453 GAATTATATA
Statistics
Matches: 64, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
71 14 0.22
72 21 0.33
73 29 0.45
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (70 bp):
AATTTTTTTATATTTTCATTTTTTGTAATTTTCTAAATTTTTAACTATTTTTTATTTTTATTTTT
TTCGA
Found at i:7682168 original size:21 final size:19
Alignment explanation
Indices: 7682142--7682181 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
7682132 CTGGTTCGGT
7682142 TTTTAATAAACACAAAAAATA
1 TTTTAA-AAACA-AAAAAATA
*
7682163 TTTTAAAAATAAAAAAATA
1 TTTTAAAAACAAAAAAATA
7682182 AAAAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 4 0.22
21 6 0.33
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
TTTTAAAAACAAAAAAATA
Found at i:7696270 original size:18 final size:18
Alignment explanation
Indices: 7696247--7696284 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7696237 TTCAATTAAG
*
7696247 TCTTTCATT-AAGTGTTTT
1 TCTTTC-TTCAAGTATTTT
7696265 TCTTTCTTCAAGTATTTT
1 TCTTTCTTCAAGTATTTT
7696283 TC
1 TC
7696285 ATCTAGTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.61
Consensus pattern (18 bp):
TCTTTCTTCAAGTATTTT
Found at i:7696370 original size:12 final size:12
Alignment explanation
Indices: 7696322--7696404 Score: 60
Period size: 12 Copynumber: 6.8 Consensus size: 12
7696312 TACCAAGTTT
*
7696322 TTTTTTATCAAG
1 TTTTTCATCAAG
* *
7696334 TTTTGCAGCAAG
1 TTTTTCATCAAG
* *
7696346 TTCTTT-TTAAAG
1 TT-TTTCATCAAG
7696358 TTTTTCATCAAG
1 TTTTTCATCAAG
* *
7696370 TCTTTTCATAAAA
1 T-TTTTCATCAAG
*
7696383 TTTTCCATCAAG
1 TTTTTCATCAAG
*
7696395 TTTTTAATCA
1 TTTTTCATCA
7696405 TTTTGTTTTT
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
11 3 0.06
12 37 0.71
13 12 0.23
ACGTcount: A:0.28, C:0.14, G:0.08, T:0.49
Consensus pattern (12 bp):
TTTTTCATCAAG
Found at i:7696381 original size:25 final size:23
Alignment explanation
Indices: 7696331--7696399 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 23
7696321 TTTTTTTATC
* *
7696331 AAGTTTTGCAGCAAGTTCTTTTTA
1 AAGTTTTCCATCAAG-TCTTTTTA
*
7696355 AAGTTTTTCATCAAGTCTTTTCATA
1 AAGTTTTCCATCAAGTCTTTT--TA
*
7696380 AAATTTTCCATCAAGT-TTTT
1 AAGTTTTCCATCAAGTCTTTT
7696400 AATCATTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.15
24 17 0.44
25 16 0.41
ACGTcount: A:0.28, C:0.14, G:0.10, T:0.48
Consensus pattern (23 bp):
AAGTTTTCCATCAAGTCTTTTTA
Found at i:7697730 original size:11 final size:11
Alignment explanation
Indices: 7697714--7697744 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7697704 TACGTCAAAC
7697714 TTTAATTTTGA
1 TTTAATTTTGA
7697725 TTTAATTTTGA
1 TTTAATTTTGA
*
7697736 TTCAATTTT
1 TTTAATTTT
7697745 CACATTTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (11 bp):
TTTAATTTTGA
Found at i:7698612 original size:22 final size:22
Alignment explanation
Indices: 7698584--7698657 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
7698574 AATTATCATA
7698584 AAATATTATCATAATATAAATT
1 AAATATTATCATAATATAAATT
7698606 AAATATT-T-ATTAA-A-AAATTTT
1 AAATATTATCA-TAATATAAA--TT
*
7698627 TAATAATTTATCATAATATAAATT
1 AAAT-A-TTATCATAATATAAATT
7698651 AAATATT
1 AAATATT
7698658 TATTAATATC
Statistics
Matches: 41, Mismatches: 2, Indels: 18
0.67 0.03 0.30
Matches are distributed among these distances:
19 3 0.07
20 2 0.05
21 9 0.22
22 10 0.24
23 3 0.07
24 9 0.22
25 2 0.05
26 3 0.07
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATATTATCATAATATAAATT
Found at i:7700826 original size:39 final size:39
Alignment explanation
Indices: 7700763--7700915 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
7700753 CATGTTTTTA
*
7700763 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATG
* *
7700802 AGTGTTGTGATATATGTTTAAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATG
*
7700841 AGTATTGTGATATATGCTTAAATTTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATG
* * * * *
7700880 TGTAATGTGATACATGCTTAAAAGTGAATGTGATTA
1 AGTATTGTGATATATGCTTAAATGT-TATGTGATTA
7700916 CCATGTAAAT
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 92 0.91
40 9 0.09
ACGTcount: A:0.31, C:0.03, G:0.22, T:0.45
Consensus pattern (39 bp):
AGTATTGTGATATATGCTTAAATGTTATGTGATTATATG
Found at i:7700832 original size:22 final size:21
Alignment explanation
Indices: 7700807--7700887 Score: 50
Period size: 22 Copynumber: 3.9 Consensus size: 21
7700797 ATATGAGTGT
7700807 TGTGA-TATATGTTTAAATGTTA
1 TGTGATTATATG-TT-AATGTTA
7700829 TGTGATTATATG---A-G-TA
1 TGTGATTATATGTTAATGTTA
*
7700845 TTGTGA-TATATGCTTAAATTTTA
1 -TGTGATTATATG-TT-AATGTTA
7700868 TGTGATTATATGTGTAATGT
1 TGTGATTATATGT-TAATGT
7700888 GATACATGCT
Statistics
Matches: 46, Mismatches: 2, Indels: 22
0.66 0.03 0.31
Matches are distributed among these distances:
16 8 0.17
17 6 0.13
18 1 0.02
21 1 0.02
22 15 0.33
23 15 0.33
ACGTcount: A:0.30, C:0.01, G:0.20, T:0.49
Consensus pattern (21 bp):
TGTGATTATATGTTAATGTTA
Found at i:7701826 original size:30 final size:30
Alignment explanation
Indices: 7701786--7701852 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 30
7701776 TATTTAAAAG
7701786 CATGTTTGGCAT-GTTCTAATGATTATTGATA
1 CATG-TTGGCATGGTT-TAATGATTATTGATA
7701817 CATGTTGGCATGGTTTAATGATTATTGATA
1 CATGTTGGCATGGTTTAATGATTATTGATA
7701847 CATGTT
1 CATGTT
7701853 TGACTAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
30 28 0.80
31 7 0.20
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.45
Consensus pattern (30 bp):
CATGTTGGCATGGTTTAATGATTATTGATA
Found at i:7705261 original size:42 final size:42
Alignment explanation
Indices: 7705214--7705307 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 42
7705204 TCATGTTTAC
* *
7705214 TTTCCGTTTAGCTCTCA-CGACCTTCTGTTTAA-CTTATATGAG
1 TTTCCGTTCAGCTCT-ATCGACCTTCTGTTTAACCCT-TATGAG
* * *
7705256 TTTCCGTTCAGCTCTATTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCCGTTCAGCTCTATCGACCTTCTGTTTAACCCTTATGAG
7705298 TTTCCGTTCA
1 TTTCCGTTCA
7705308 ACCCTTATGG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
41 1 0.02
42 42 0.93
43 2 0.04
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.44
Consensus pattern (42 bp):
TTTCCGTTCAGCTCTATCGACCTTCTGTTTAACCCTTATGAG
Found at i:7705333 original size:21 final size:21
Alignment explanation
Indices: 7705278--7705333 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
7705268 TCTATTGAGC
7705278 TTCTGTTTAACCCTTATGGGT
1 TTCTGTTTAACCCTTATGGGT
* *
7705299 TTCCGTTCAACCCTTATGGGT
1 TTCTGTTTAACCCTTATGGGT
*
7705320 TTCTGTTTAGCCCT
1 TTCTGTTTAACCCT
7705334 CACGAGCTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.12, C:0.25, G:0.18, T:0.45
Consensus pattern (21 bp):
TTCTGTTTAACCCTTATGGGT
Found at i:7707538 original size:26 final size:26
Alignment explanation
Indices: 7707509--7707575 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
7707499 CAAACATTAA
* *
7707509 ACTTACTTAAATAAA-TGAACTAAAAC
1 ACTTA-TTAAATAAAGTCAACAAAAAC
7707535 ACTTATTAAATAAAGTTCAACAAAAAC
1 ACTTATTAAATAAAG-TCAACAAAAAC
*
7707562 ACTTATTAATTAAA
1 ACTTATTAAATAAA
7707576 ACTAAGATGA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
25 9 0.25
26 5 0.14
27 22 0.61
ACGTcount: A:0.54, C:0.13, G:0.03, T:0.30
Consensus pattern (26 bp):
ACTTATTAAATAAAGTCAACAAAAAC
Found at i:7711854 original size:26 final size:26
Alignment explanation
Indices: 7711842--7711914 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 26
7711832 CCCGTTATAT
7711842 GGCTCTTCGTGAGCTTCCCGATTAAA
1 GGCTCTTCGTGAGCTTCCCGATTAAA
* * *
7711868 GGCTCTTTGTGAGCTTCCTGATTAAT
1 GGCTCTTCGTGAGCTTCCCGATTAAA
7711894 GGCTC-TC-TAGAGCTTCCCGAT
1 GGCTCTTCGT-GAGCTTCCCGAT
7711915 ATGGCTCGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.02
25 12 0.29
26 28 0.68
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.34
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCGATTAAA
Found at i:7711979 original size:25 final size:25
Alignment explanation
Indices: 7711835--7711980 Score: 61
Period size: 26 Copynumber: 5.8 Consensus size: 25
7711825 TGAGTGTCCC
*
7711835 GTTATATGGCTCTTCGTGAGCTTCCCG
1 GTTA-ATGGCTCTTCG-GAGCTTCCTG
* * *
7711862 ATTAAAGGCTCTTTGTGAGCTTCCTG
1 GTTAATGGCTCTTCG-GAGCTTCCTG
* * *
7711888 ATTAATGGCTC-TCTAGAGCTTCC-C
1 GTTAATGGCTCTTC-GGAGCTTCCTG
* * *
7711912 GAT-ATGGCTCGCTT--GAACTT-CTT
1 GTTAATGGCT--CTTCGGAGCTTCCTG
* * * *
7711935 GATATATGGCTATCCAGAGCTTCCTG
1 GTTA-ATGGCTCTTCGGAGCTTCCTG
7711961 GTTAATGGCTCTTCGGAGCT
1 GTTAATGGCTCTTCGGAGCT
7711981 ACCCGTTATT
Statistics
Matches: 89, Mismatches: 20, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
22 1 0.01
23 15 0.17
24 1 0.01
25 34 0.38
26 35 0.39
27 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (25 bp):
GTTAATGGCTCTTCGGAGCTTCCTG
Found at i:7711980 original size:73 final size:73
Alignment explanation
Indices: 7711878--7712018 Score: 180
Period size: 73 Copynumber: 1.9 Consensus size: 73
7711868 GGCTCTTTGT
* * *
7711878 GAGCTTCCTGATTAATGGCTCTCTAGAGCTTCCCGATA-TGGCTCGCTTGAA-CTTCTTGATATA
1 GAGCTTCCTGATTAATGGCTCTCTAGAGCTACCCGATATTGGCTCGCAT-AAGCTTCCTGAT-TA
7711941 TGGCTATCCA
64 TGGCTATCCA
* * *
7711951 GAGCTTCCTGGTTAATGGCTCT-TCGGAGCTACCCGTTATTGGCTCGCATAAGCTTCCTGATTAT
1 GAGCTTCCTGATTAATGGCTCTCT-AGAGCTACCCGATATTGGCTCGCATAAGCTTCCTGATTAT
7712015 GGCT
65 GGCT
7712019 CTTATGAGCT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
72 1 0.02
73 41 0.69
74 17 0.29
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (73 bp):
GAGCTTCCTGATTAATGGCTCTCTAGAGCTACCCGATATTGGCTCGCATAAGCTTCCTGATTATG
GCTATCCA
Found at i:7712028 original size:73 final size:73
Alignment explanation
Indices: 7711853--7712031 Score: 177
Period size: 73 Copynumber: 2.4 Consensus size: 73
7711843 GCTCTTCGTG
* * * *
7711853 AGCTTCCCGATTAAAGGCTCTTTGTGAGCTTCCTGATTAATGGCTCTCTAGAGCTTCCCGATATG
1 AGCTTCCTGATT-ATGGCTC-TTATGAGCTTCCTGATTAATGGCTCTCTAGAGCTACCCGATATG
*
7711918 GCTCGCTTGA
64 GCTCGCATGA
* * * * * *
7711928 A-CTTCTTGATATATGGCTATCCA-GAGCTTCCTGGTTAATGGCTCT-TCGGAGCTACCCGTTAT
1 AGCTTCCTGAT-TATGGCTCT-TATGAGCTTCCTGATTAATGGCTCTCT-AGAGCTACCCGATA-
7711990 TGGCTCGCAT-A
62 TGGCTCGCATGA
7712001 AGCTTCCTGATTATGGCTCTTATGAGCTTCC
1 AGCTTCCTGATTATGGCTCTTATGAGCTTCC
7712032 CGTTATACAG
Statistics
Matches: 84, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
72 2 0.02
73 51 0.61
74 29 0.35
75 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (73 bp):
AGCTTCCTGATTATGGCTCTTATGAGCTTCCTGATTAATGGCTCTCTAGAGCTACCCGATATGGC
TCGCATGA
Found at i:7712051 original size:49 final size:49
Alignment explanation
Indices: 7711952--7712056 Score: 113
Period size: 49 Copynumber: 2.1 Consensus size: 49
7711942 GGCTATCCAG
* * ** *
7711952 AGCTTCCTGGTTAATGGCTCTTCGGAGCTACCCGTTATTGGCTCGCATA
1 AGCTTCCTGATTAATGGCTCTTAGGAGCTACCCGTTATCAGCCCGCATA
* * *
7712001 AGCTTCCTGATT-ATGGCTCTTATGAGCTTCCCGTTATACAGCCCGGATA
1 AGCTTCCTGATTAATGGCTCTTAGGAGCTACCCGTTAT-CAGCCCGCATA
*
7712050 AGGTTCC
1 AGCTTCC
7712057 CGTTACAAGG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
48 22 0.48
49 24 0.52
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (49 bp):
AGCTTCCTGATTAATGGCTCTTAGGAGCTACCCGTTATCAGCCCGCATA
Found at i:7715480 original size:18 final size:17
Alignment explanation
Indices: 7715450--7715493 Score: 72
Period size: 18 Copynumber: 2.6 Consensus size: 17
7715440 TTAATTAAAT
7715450 AAAAAGG-ACTAAATTG
1 AAAAAGGTACTAAATTG
7715466 AAAAATGGTACTAAATTG
1 AAAAA-GGTACTAAATTG
7715484 AAAAAGGTAC
1 AAAAAGGTAC
7715494 AAAACTTGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.19
17 7 0.27
18 14 0.54
ACGTcount: A:0.55, C:0.07, G:0.18, T:0.20
Consensus pattern (17 bp):
AAAAAGGTACTAAATTG
Found at i:7715487 original size:17 final size:18
Alignment explanation
Indices: 7715450--7715493 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
7715440 TTAATTAAAT
7715450 AAAAAGG-ACTAAATTGA
1 AAAAAGGTACTAAATTGA
*
7715467 AAAATGGTACTAAATTG-
1 AAAAAGGTACTAAATTGA
7715484 AAAAAGGTAC
1 AAAAAGGTAC
7715494 AAAACTTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.55, C:0.07, G:0.18, T:0.20
Consensus pattern (18 bp):
AAAAAGGTACTAAATTGA
Found at i:7716628 original size:21 final size:21
Alignment explanation
Indices: 7716604--7716660 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
7716594 TTGTGTTTAC
7716604 TTTCCGTTTAGCTCTTACGAG
1 TTTCCGTTTAGCTCTTACGAG
** * * *
7716625 TTTCTATTTAACTCATATGAG
1 TTTCCGTTTAGCTCTTACGAG
*
7716646 TTTCCGTTCAGCTCT
1 TTTCCGTTTAGCTCT
7716661 ATTGAGCTTC
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.18, C:0.23, G:0.14, T:0.46
Consensus pattern (21 bp):
TTTCCGTTTAGCTCTTACGAG
Found at i:7716677 original size:42 final size:42
Alignment explanation
Indices: 7716604--7716697 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 42
7716594 TTGTGTTTAC
* * *
7716604 TTTCCGTTTAGCTCTTACGAGTTTCTATTTAACTCATATGAG
1 TTTCCGTTCAGCTCTTACGAGCTTCTATTTAACCCATATGAG
* * * *
7716646 TTTCCGTTCAGCTC-TATTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCCGTTCAGCTCTTA-CGAGCTTCTATTTAACCCATATGAG
*
7716688 TTTTCGTTCA
1 TTTCCGTTCA
7716698 ACCCTTACAG
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 2 0.05
42 41 0.95
ACGTcount: A:0.17, C:0.21, G:0.16, T:0.46
Consensus pattern (42 bp):
TTTCCGTTCAGCTCTTACGAGCTTCTATTTAACCCATATGAG
Found at i:7718148 original size:39 final size:39
Alignment explanation
Indices: 7718094--7718248 Score: 229
Period size: 39 Copynumber: 3.9 Consensus size: 39
7718084 AACATGTTTT
*
7718094 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
*
7718133 TGAGTATTGTGATATATGTTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
*
7718172 TGAGTATTGTGATATATGCTTAAATTTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * * * *
7718211 TGTGTAATGTGATACATGCTTAAAAGTGAATGTGATTA
1 TGAGTATTGTGATATATGCTTAAATGT-TATGTGATTA
7718249 CCATGTAAAT
Statistics
Matches: 105, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 96 0.91
40 9 0.09
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:7719074 original size:113 final size:113
Alignment explanation
Indices: 7718876--7719111 Score: 418
Period size: 113 Copynumber: 2.1 Consensus size: 113
7718866 CCTATCACGA
* *
7718876 GTATCGATCCTCGGGGTAATTTTATCAATACTTTTTCAATTGTACCGATATTTTGTTGTGTTTTT
1 GTATCGATACTCGGGGTAATTTTATCAATACTTTTTCAATTGTACCAATATTTTGTTGTGTTTTT
* *
7718941 ATTTTAGACAATAAACAGAATGCTGATTTGGTACTGACTTTCCATATG
66 ATTTTAGACAAAAAACAGAATGCTGATTTGGCACTGACTTTCCATATG
* *
7718989 GTATCGATACTCGGGGTAATTTTATCGATACTTTTTCAGTTGTACCAATATTTTGTTGTGTTTTT
1 GTATCGATACTCGGGGTAATTTTATCAATACTTTTTCAATTGTACCAATATTTTGTTGTGTTTTT
7719054 ATTTTAGACAAAAAACAGAATGCTGATTTGGCACTGACTTTCCATATG
66 ATTTTAGACAAAAAACAGAATGCTGATTTGGCACTGACTTTCCATATG
7719102 GTATCGATAC
1 GTATCGATAC
7719112 CGTAAAAGGA
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
113 117 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.42
Consensus pattern (113 bp):
GTATCGATACTCGGGGTAATTTTATCAATACTTTTTCAATTGTACCAATATTTTGTTGTGTTTTT
ATTTTAGACAAAAAACAGAATGCTGATTTGGCACTGACTTTCCATATG
Found at i:7724135 original size:33 final size:33
Alignment explanation
Indices: 7724051--7724138 Score: 106
Period size: 33 Copynumber: 2.7 Consensus size: 33
7724041 CATAAAGATA
* * *
7724051 AAGTCCACCAGGACAGTAAACACGAAACAGAGT
1 AAGTACACTAGGACAATAAACACGAAACAGAGT
* * *
7724084 AAGTTCACTGGGATAATAAACACGAAACAGAGT
1 AAGTACACTAGGACAATAAACACGAAACAGAGT
7724117 AAGTACA-TAAGGACAATAAACA
1 AAGTACACT-AGGACAATAAACA
7724139 TGAGGTAAGC
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
32 1 0.02
33 45 0.98
ACGTcount: A:0.49, C:0.18, G:0.19, T:0.14
Consensus pattern (33 bp):
AAGTACACTAGGACAATAAACACGAAACAGAGT
Found at i:7729032 original size:4 final size:4
Alignment explanation
Indices: 7729023--7729488 Score: 547
Period size: 4 Copynumber: 116.5 Consensus size: 4
7729013 TATAATTCAA
* * *
7729023 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AGAC AGAC AGAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
7729071 ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATAT ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
7729119 ATAC ATGC ATGC ATGC ATGC ATAC ATAC ATGC GTAC GTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
7729167 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATCC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
7729215 ATAC ATCC ATCC ATCC ATAC ATAC AT-C TATAC ATGC ATCC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC
* ** * * * ** * * * * * *
7729263 ATGC ATGT ATGC ATTC ATGC ATGT ATGC ATTC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
7729311 ATAC ATAC ATAC GTAC ATAC ATAC ATAC GTAC GTAC GTAC GTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
7729359 ATAC CTAC ATAC ATAC ATAC ATAC ACAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7729407 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7729455 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
7729489 CACTTATACT
Statistics
Matches: 423, Mismatches: 37, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
3 1 0.00
4 421 1.00
5 1 0.00
ACGTcount: A:0.42, C:0.26, G:0.06, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:7730073 original size:21 final size:21
Alignment explanation
Indices: 7730025--7730084 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
7730015 TAAATATGCC
*
7730025 AACAGAAGCTCG-AA-AACTG
1 AACAGAAGCTCGTAAGAGCTG
* *
7730044 AATAAAAGCTCGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
7730065 AACAGAAGCTCGTAAGAGCT
1 AACAGAAGCTCGTAAGAGCT
7730085 AATCCACCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
19 10 0.29
20 2 0.06
21 22 0.65
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.15
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:7731161 original size:12 final size:12
Alignment explanation
Indices: 7731144--7731171 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7731134 TTCTTTATTT
7731144 ATTAATCAATCC
1 ATTAATCAATCC
7731156 ATTAATCAATCC
1 ATTAATCAATCC
7731168 ATTA
1 ATTA
7731172 TAATTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (12 bp):
ATTAATCAATCC
Found at i:7748016 original size:15 final size:15
Alignment explanation
Indices: 7747998--7748037 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
7747988 AAATATTTTT
7747998 TTATAAAATTCTAAA
1 TTATAAAATTCTAAA
*
7748013 TTATATAATTCTAAA
1 TTATAAAATTCTAAA
*
7748028 TTTTAAAATT
1 TTATAAAATT
7748038 TCAAAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATAAAATTCTAAA
Found at i:7748711 original size:29 final size:31
Alignment explanation
Indices: 7748655--7748713 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
7748645 ATCTCAAAAT
* *
7748655 TATACATGAACTTTGATTTAGTGTGCAATTG
1 TATACATGAACTTTAATTTAGTATGCAATTG
7748686 TATACATGAACTTTAATTT-G-ATGCAATT
1 TATACATGAACTTTAATTTAGTATGCAATT
7748714 ATACACCTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 7 0.27
30 1 0.04
31 18 0.69
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.42
Consensus pattern (31 bp):
TATACATGAACTTTAATTTAGTATGCAATTG
Found at i:7748724 original size:29 final size:30
Alignment explanation
Indices: 7748652--7748733 Score: 73
Period size: 31 Copynumber: 2.7 Consensus size: 30
7748642 TAAATCTCAA
* *
7748652 AATTATACA-TGAACTTTGATTTAGTGTGC
1 AATTATACACTGAACTTTAATTTAGTATGC
7748681 AATTGTATACA-TGAACTTTAATTT-G-ATGC
1 AA-T-TATACACTGAACTTTAATTTAGTATGC
*
7748710 AATTATACACCTGAAACTCTAATT
1 AATTATACA-CTG-AACTTTAATT
7748734 GTGGTTCAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
27 6 0.13
28 1 0.02
29 9 0.20
30 11 0.24
31 18 0.40
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.39
Consensus pattern (30 bp):
AATTATACACTGAACTTTAATTTAGTATGC
Found at i:7748948 original size:29 final size:30
Alignment explanation
Indices: 7748905--7748961 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
7748895 GAATTGGATC
7748905 AAATCAAAATTTTATGTATAAAATTACACA
1 AAATCAAAATTTTATGTATAAAATTACACA
*
7748935 AAATCAAAA-TTTATGTATACAATTACA
1 AAATCAAAATTTTATGTATAAAATTACA
7748962 TATTAAACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.33
Consensus pattern (30 bp):
AAATCAAAATTTTATGTATAAAATTACACA
Found at i:7749465 original size:18 final size:20
Alignment explanation
Indices: 7749429--7749522 Score: 66
Period size: 20 Copynumber: 4.6 Consensus size: 20
7749419 AAAATTTATA
7749429 TTACCATATATATTGATATG
1 TTACCATATATATTGATATG
* *
7749449 TTACCGTATATA-T-ATATT
1 TTACCATATATATTGATATG
* * * * *
7749467 TTACCATACAAAATAATATT
1 TTACCATATATATTGATATG
*
7749487 TTACCTTATATATCAATTGATTTG
1 TTACC--ATATAT--ATTGATATG
7749511 TTACCATATATA
1 TTACCATATATA
7749523 GATACGTATA
Statistics
Matches: 57, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
18 13 0.23
19 2 0.04
20 22 0.39
22 10 0.18
24 10 0.18
ACGTcount: A:0.37, C:0.13, G:0.05, T:0.45
Consensus pattern (20 bp):
TTACCATATATATTGATATG
Found at i:7751170 original size:14 final size:14
Alignment explanation
Indices: 7751151--7751182 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
7751141 CCACATTACA
7751151 TAGTTCGACTATTT
1 TAGTTCGACTATTT
7751165 TAGTTCGACTATTT
1 TAGTTCGACTATTT
7751179 TAGT
1 TAGT
7751183 CACTCTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.12, G:0.16, T:0.50
Consensus pattern (14 bp):
TAGTTCGACTATTT
Found at i:7755225 original size:36 final size:36
Alignment explanation
Indices: 7755185--7755261 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 36
7755175 AGTCATTGAT
*
7755185 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
7755221 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
*
7755257 TGATT
1 CGATT
7755262 GTGTAGCTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 36 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:7755909 original size:36 final size:36
Alignment explanation
Indices: 7755842--7755918 Score: 104
Period size: 36 Copynumber: 2.1 Consensus size: 36
7755832 AGTCATTGAT
*
7755842 CGATTAAGTAGATATGACAACTTGTTGGTAATCAAC
1 CGATTAAGTAGATATGACAACGTGTTGGTAATCAAC
7755878 CGATTAAGTAGATATGA-ACACGTGCTT-GTAATCAAC
1 CGATTAAGTAGATATGACA-ACGTG-TTGGTAATCAAC
*
7755914 TGATT
1 CGATT
7755919 GTGTAGCTCT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
35 1 0.03
36 34 0.92
37 2 0.05
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (36 bp):
CGATTAAGTAGATATGACAACGTGTTGGTAATCAAC
Found at i:7756214 original size:657 final size:658
Alignment explanation
Indices: 7754976--7756591 Score: 3000
Period size: 657 Copynumber: 2.5 Consensus size: 658
7754966 TAGCTGTTTA
*
7754976 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGTTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
*
7755041 TGTTTTTGATGTGCATGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
* * * *
7755106 AGTTATCTGGCAGTTGATTGATCGGAGAAATGTGTTAGTAATTATTGGATAGAAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
7755171 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
7755236 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCACGTTATTAAGTAACGGATTGAG
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCACGTTATTAAGTAACGGATTGAG
* * *
7755301 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAGGTGCTGAGCACGTGTTAGCAATTAACATCAC
326 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGCGTTAGCAATTAACATCAC
*
7755366 GTGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
391 ATGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
7755431 CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
456 CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
* *
7755496 GATCCGGAAAGTTTGGGATGCATACTTTTGTTTGTTGTGCATGTGTTTCTTTCTCATTTTGTTCT
521 GATCCGGAAAGTTCGGGATGCATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
*
7755561 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGAC-GATTGATTGGTGAAACTTGTTA
586 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACTGATTGATTGGTGAAACTTATTA
7755625 GTAATTAT
651 GTAATTAT
7755633 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
7755698 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
7755763 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
* *
7755828 TGTTAGTCATTGATCGATTAAGTAGATATGACAACTTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
*
7755893 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCATGTTATTAAGTAACGGATTGAG
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCACGTTATTAAGTAACGGATTGAG
7755958 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGCGTTAGCAATTAACATCAC
326 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGCGTTAGCAATTAACATCAC
*
7756023 ATGGTAGTAATTGATGGATTAAGTAGTTATGAGCATGTGACCATGCTTGAGCTACTATCCTTGGA
391 ATGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
7756088 CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
456 CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
*
7756153 GATCTGGAAAGTTCGGGATGCATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
521 GATCCGGAAAGTTCGGGATGCATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
7756218 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTA
586 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGAC---TGATTGATTGGTGAAACTTA
7756283 TTAGTAATTAT
648 TTAGTAATTAT
7756294 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
*
7756359 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTTCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
7756424 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
7756489 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
* * *
7756554 GAACACGTGCTTGTAATCAACTGTTTGAGTAGTTCTGA
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGA
7756592 TCACGTGGTA
Statistics
Matches: 931, Mismatches: 24, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
657 610 0.66
661 321 0.34
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (658 bp):
TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCACGTTATTAAGTAACGGATTGAG
TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGCGTTAGCAATTAACATCAC
ATGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
GATCCGGAAAGTTCGGGATGCATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACTGATTGATTGGTGAAACTTATTA
GTAATTAT
Found at i:7756598 original size:36 final size:36
Alignment explanation
Indices: 7756503--7756574 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
7756493 AGTCATTGAT
*
7756503 CGATTAAGTAGATATGACCACGTGTTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGTTGGTAATCAAC
7756539 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
1 CGATTAAGTAGATATGAACACGTG-TTGGTAATCAAC
7756575 TGTTTGAGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 32 0.94
37 2 0.06
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGTTGGTAATCAAC
Found at i:7756606 original size:36 final size:36
Alignment explanation
Indices: 7756503--7756606 Score: 109
Period size: 36 Copynumber: 2.9 Consensus size: 36
7756493 AGTCATTGAT
* * *
7756503 CGATTAAGTAGATATGACCACGTGTTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTAGTAATCAAC
*
7756539 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTAGTAATCAAC
* * * * * * *
7756575 TGTTTGAGTAGTTCTGATCACGTGGTAGTAAT
1 CGATTAAGTAGATATGAACACGTGCTAGTAAT
7756607 TGATGGATTA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTAGTAATCAAC
Found at i:7757004 original size:36 final size:35
Alignment explanation
Indices: 7756935--7757037 Score: 95
Period size: 36 Copynumber: 3.0 Consensus size: 35
7756925 TGTAATCAAC
* *
7756935 TGATTGTGTAGCTCTGAGCACATGTTAGTAATTAA
1 TGATTGAGTAGCTCTGAGCACATGTTAGAAATTAA
* * * *
7756970 TGGATTGAGTAGTTCTGAGCACTTTTTTGAAATTAA
1 T-GATTGAGTAGCTCTGAGCACATGTTAGAAATTAA
* * *
7757006 TGATCGAGTA---CTGAGCACGTGTTAGCAATTAA
1 TGATTGAGTAGCTCTGAGCACATGTTAGAAATTAA
7757038 CAGTTTGAGT
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
32 18 0.32
35 9 0.16
36 29 0.52
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (35 bp):
TGATTGAGTAGCTCTGAGCACATGTTAGAAATTAA
Found at i:7761059 original size:34 final size:35
Alignment explanation
Indices: 7761011--7761079 Score: 131
Period size: 34 Copynumber: 2.0 Consensus size: 35
7761001 CAAGTCTCAG
7761011 GCACGAATTGATGCATCTAAGAAAAACAGAAACAT
1 GCACGAATTGATGCATCTAAGAAAAACAGAAACAT
7761046 GCAC-AATTGATGCATCTAAGAAAAACAGAAACAT
1 GCACGAATTGATGCATCTAAGAAAAACAGAAACAT
7761080 ACTTATAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 30 0.88
35 4 0.12
ACGTcount: A:0.49, C:0.17, G:0.16, T:0.17
Consensus pattern (35 bp):
GCACGAATTGATGCATCTAAGAAAAACAGAAACAT
Found at i:7778256 original size:19 final size:20
Alignment explanation
Indices: 7778232--7778278 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
7778222 GGATGAAAAG
7778232 AGAAAATAGAAACGTA-GAA
1 AGAAAATAGAAACGTAGGAA
**
7778251 AGAAAATA-AAATTTAGGAA
1 AGAAAATAGAAACGTAGGAA
7778270 AGAAAATAG
1 AGAAAATAG
7778279 GAGAGATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.64, C:0.02, G:0.19, T:0.15
Consensus pattern (20 bp):
AGAAAATAGAAACGTAGGAA
Found at i:7783330 original size:223 final size:224
Alignment explanation
Indices: 7782941--7783387 Score: 797
Period size: 223 Copynumber: 2.0 Consensus size: 224
7782931 GACTTATTAA
* *
7782941 GTCAATATTCCTACAACACGAAACATCCTTAACTAGCTGGAATGCCAATAATACATTGATTCCAC
1 GTCAATATTCCTACAACACAAAACATCCTTAACTAGCTGGAATGCCAACAATACATTGATTCCAC
7783006 CCCTTATGTCTCAACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
66 CCCTTATGTCTCAACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
7783071 TCGACAAAAAGAACCAATAAAACATTAATATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
131 TCGACAAAAAGAACCAATAAAACATTAATATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
7783136 ACCATCCAAGTGAATGACCTCAAAACCTT
196 ACCATCCAAGTGAATGACCTCAAAACCTT
* * *
7783165 GTCAATATTCCTACAACACAAAACATCTTTAACTAGTTGGTA-GCCAACAATACATTGATTCCAC
1 GTCAATATTCCTACAACACAAAACATCCTTAACTAGCTGGAATGCCAACAATACATTGATTCCAC
* *
7783229 CCTTTATGTCTCGACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
66 CCCTTATGTCTCAACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
* *
7783294 TCGACAAAAAGAACCAGTAAAACATTACTATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
131 TCGACAAAAAGAACCAATAAAACATTAATATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
*
7783359 ATCATCCAAGTGAATGACCTCAAAACCTT
196 ACCATCCAAGTGAATGACCTCAAAACCTT
7783388 TATTATCTTT
Statistics
Matches: 213, Mismatches: 10, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
223 175 0.82
224 38 0.18
ACGTcount: A:0.40, C:0.24, G:0.11, T:0.24
Consensus pattern (224 bp):
GTCAATATTCCTACAACACAAAACATCCTTAACTAGCTGGAATGCCAACAATACATTGATTCCAC
CCCTTATGTCTCAACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
TCGACAAAAAGAACCAATAAAACATTAATATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
ACCATCCAAGTGAATGACCTCAAAACCTT
Found at i:7784249 original size:30 final size:29
Alignment explanation
Indices: 7784215--7784279 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
7784205 ATAAATTACA
*
7784215 ATTTAGGCACTAAATTATTTCAAAATTTTC
1 ATTTAGGCACTAAACTA-TTCAAAATTTTC
* * *
7784245 ATTTAAGTCACTAAACTATTCAAAGTTTTT
1 ATTT-AGGCACTAAACTATTCAAAATTTTC
7784275 ATTTA
1 ATTTA
7784280 AGCCACTGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 1 0.03
30 18 0.60
31 11 0.37
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (29 bp):
ATTTAGGCACTAAACTATTCAAAATTTTC
Found at i:7784280 original size:30 final size:31
Alignment explanation
Indices: 7784222--7784286 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 31
7784212 ACAATTTAGG
* *
7784222 CACTAAATTATTTCAAAATTTTCATTTAAGT
1 CACTAAACTATTTCAAAATTTTCATTTAAGC
* *
7784253 CACTAAACTA-TTCAAAGTTTTTATTTAAGC
1 CACTAAACTATTTCAAAATTTTCATTTAAGC
7784283 CACT
1 CACT
7784287 GCTAATGAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 21 0.70
31 9 0.30
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.42
Consensus pattern (31 bp):
CACTAAACTATTTCAAAATTTTCATTTAAGC
Found at i:7792847 original size:18 final size:18
Alignment explanation
Indices: 7792824--7792861 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
7792814 ACACAAGGAA
7792824 ATATGTCAATAACAAAAT
1 ATATGTCAATAACAAAAT
*
7792842 ATATGTCAATAACATAAT
1 ATATGTCAATAACAAAAT
7792860 AT
1 AT
7792862 TTCCATAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATATGTCAATAACAAAAT
Found at i:7798407 original size:58 final size:58
Alignment explanation
Indices: 7798341--7798455 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 58
7798331 CCGAACAATC
*
7798341 ACATCTATGTCTTTATTTCTGGGAACCAATCCAACTCTGATAGCTTAGAAAAACTATT
1 ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAAACTATT
7798399 ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAAACTAT
1 ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAAACTAT
7798456 CTCTCTAATT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (58 bp):
ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAAACTATT
Found at i:7799150 original size:5 final size:5
Alignment explanation
Indices: 7799142--7799174 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7799132 TTAAGTATAA
*
7799142 ATATT ATATT ATATT ATTTT ATATT ATATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATA
7799175 AAAGAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
ATATT
Found at i:7800167 original size:25 final size:25
Alignment explanation
Indices: 7800133--7800215 Score: 148
Period size: 25 Copynumber: 3.3 Consensus size: 25
7800123 ACTTTAGCAC
7800133 GCTCTCTGATTATTAGCACGTTGGT
1 GCTCTCTGATTATTAGCACGTTGGT
7800158 GCTCTCTGATTATTAGCACGTTGGT
1 GCTCTCTGATTATTAGCACGTTGGT
**
7800183 GCTCTCTGATTATTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACGTTGGT
7800208 GCTCTCTG
1 GCTCTCTG
7800216 TTTAGCACAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACGTTGGT
Found at i:7800223 original size:22 final size:22
Alignment explanation
Indices: 7800145--7800261 Score: 92
Period size: 25 Copynumber: 5.0 Consensus size: 22
7800135 TCTCTGATTA
**
7800145 TTAGCACGTTGGTGCTCTCTGATT
1 TTAGCACGTCAGTGCTCTCTG--T
**
7800169 ATTAGCACGTTGGTGCTCTCTGATT
1 -TTAGCACGTCAGTGCTCTCTG--T
7800194 ATTAGCACGTCAGTGCTCTCTGT
1 -TTAGCACGTCAGTGCTCTCTGT
* *
7800217 TTAGCACATCTA-TGCTCTTTGT
1 TTAGCACGTC-AGTGCTCTCTGT
* *
7800239 ATAGCACTTCAGTGCTCTCTGT
1 TTAGCACGTCAGTGCTCTCTGT
7800261 T
1 T
7800262 CATTAGTGCA
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
21 1 0.01
22 35 0.43
23 2 0.02
25 44 0.54
ACGTcount: A:0.16, C:0.23, G:0.21, T:0.40
Consensus pattern (22 bp):
TTAGCACGTCAGTGCTCTCTGT
Found at i:7805588 original size:14 final size:14
Alignment explanation
Indices: 7805569--7805596 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7805559 ATGAATCTAT
7805569 ACTTTGCTTGCTCA
1 ACTTTGCTTGCTCA
7805583 ACTTTGCTTGCTCA
1 ACTTTGCTTGCTCA
7805597 TAAGACAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.14, T:0.43
Consensus pattern (14 bp):
ACTTTGCTTGCTCA
Found at i:7813269 original size:2 final size:2
Alignment explanation
Indices: 7813262--7813287 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7813252 ACTGCCATTT
7813262 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7813288 ATTACGTCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7820416 original size:16 final size:16
Alignment explanation
Indices: 7820395--7820430 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
7820385 TTTGATTCGC
*
7820395 TGTATTGGATTAGAGT
1 TGTATTGGATTAGAGA
7820411 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGA
7820427 TGTA
1 TGTA
7820431 ATAGCAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.42
Consensus pattern (16 bp):
TGTATTGGATTAGAGA
Found at i:7820687 original size:18 final size:17
Alignment explanation
Indices: 7820666--7820700 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7820656 TTATTATTAA
*
7820666 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7820684 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7820701 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7820844 original size:155 final size:157
Alignment explanation
Indices: 7820560--7820868 Score: 550
Period size: 155 Copynumber: 2.0 Consensus size: 157
7820550 CCCTTAGCAT
* *
7820560 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAG
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
7820625 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTGTAATTAAAATATATAA
7820690 TTTAATAAAATTCTT-ATAATTAACAG
131 TTTAATAAAATTCTTAATAATTAACAG
*
7820716 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-TAATATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
*
7820780 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTGTAATTAAAATCTATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTGTAATTAAAATATATAA
7820845 TTTAATAAAATTCTTAATAATTAA
131 TTTAATAAAATTCTTAATAATTAA
7820869 TATTCTTATA
Statistics
Matches: 146, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
155 84 0.58
156 62 0.42
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTGTAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTAACAG
Found at i:7820933 original size:66 final size:63
Alignment explanation
Indices: 7820848--7821058 Score: 192
Period size: 66 Copynumber: 3.4 Consensus size: 63
7820838 TCTATAATTT
*
7820848 AATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTA
1 AATAAAATT-TAAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT-T-
7820913 A
63 A
* ** * * *
7820914 AATATAAA-TTAACATAATTATTATT-AAATAT--A-TTA-T--AAT--TAAAATAT-ATAATTT
1 AATA-AAATTTAA-ATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTTA
*
7820968 AATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATA
1 AATAAAATT-TAAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT-TA
7821033 AATGAAAATTTGAAATAATTAATATT
1 AAT-AAAATTT-AAATAATTAATATT
7821059 AAATATATTT
Statistics
Matches: 113, Mismatches: 15, Indels: 34
0.70 0.09 0.21
Matches are distributed among these distances:
53 3 0.03
54 16 0.14
55 7 0.06
56 4 0.04
57 8 0.07
58 3 0.03
59 4 0.04
61 4 0.04
62 3 0.03
63 8 0.07
64 4 0.04
65 11 0.10
66 35 0.31
67 3 0.03
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (63 bp):
AATAAAATTTAAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTTA
Found at i:7820938 original size:120 final size:121
Alignment explanation
Indices: 7820799--7821089 Score: 473
Period size: 120 Copynumber: 2.4 Consensus size: 121
7820789 ATTTAATCAT
* * *
7820799 ATTTAAACATAATTATTATTAAATATATTGTAATTAAAATCTATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
7820864 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAAT-ATAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AA
7820921 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
7820984 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
* * *
7821040 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAA
7821090 AATAATTTAA
Statistics
Matches: 160, Mismatches: 6, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
119 7 0.04
120 148 0.93
121 4 0.03
122 1 0.01
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
Found at i:7820943 original size:155 final size:154
Alignment explanation
Indices: 7820604--7820920 Score: 361
Period size: 155 Copynumber: 2.0 Consensus size: 154
7820594 ATTTAAATTT
* * *
7820604 TAATAAGATTATTATTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATA
1 TAATAAGATTA-TAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATA
* * * * **
7820669 TATTTTAATTAAAATATATAATTTAATAAAATTCTTATAATTAACAGAAATTTGTTTTGGTAAAT
65 TATTGTAATTAAAATATATAATTTAATAAAATTCTTATAATTAACACAAATATGATTTACTAAAT
* * * * * *
7820734 TATTATTGTTATTGTTATTTAAATTT
130 CATTAATGATATTGATATGTAAA-TA
7820760 TAATAAGATTATAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATAT
1 TAATAAGATTATAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATAT
* * **
7820825 ATTGTAATTAAAATCTATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTC
66 ATTGTAATTAAAATATATAATTTAATAAAATTCTT-ATAATTAACA--CAAATATG-ATTTACT-
7820890 AAATCA-TAAT-ATA-TGATACTGTAAAATA
126 AAATCATTAATGATATTGATA-TGT-AAATA
7820918 TAA
1 TAA
7820921 ATTAACATAA
Statistics
Matches: 135, Mismatches: 19, Indels: 12
0.81 0.11 0.07
Matches are distributed among these distances:
155 84 0.62
156 20 0.15
157 4 0.03
158 12 0.09
159 10 0.07
160 5 0.04
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (154 bp):
TAATAAGATTATAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATAT
ATTGTAATTAAAATATATAATTTAATAAAATTCTTATAATTAACACAAATATGATTTACTAAATC
ATTAATGATATTGATATGTAAATA
Found at i:7820969 original size:14 final size:15
Alignment explanation
Indices: 7820920--7820971 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
7820910 GTAAAATATA
7820920 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
7820935 TATTAAATATATTAT
1 AATTAAATATATTAT
7820950 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
7820963 AATTTAATA
1 AATTAAATA
7820972 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:7822645 original size:72 final size:72
Alignment explanation
Indices: 7822528--7822671 Score: 288
Period size: 72 Copynumber: 2.0 Consensus size: 72
7822518 TTGTTCTTAA
7822528 GAAAAAGAAAACAAATTAACATTATTTACTATTTTGAATACCATGAATCAAAAGGTGAACAGTTT
1 GAAAAAGAAAACAAATTAACATTATTTACTATTTTGAATACCATGAATCAAAAGGTGAACAGTTT
7822593 ATAATAT
66 ATAATAT
7822600 GAAAAAGAAAACAAATTAACATTATTTACTATTTTGAATACCATGAATCAAAAGGTGAACAGTTT
1 GAAAAAGAAAACAAATTAACATTATTTACTATTTTGAATACCATGAATCAAAAGGTGAACAGTTT
7822665 ATAATAT
66 ATAATAT
7822672 TATATCGGTA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.49, C:0.10, G:0.11, T:0.31
Consensus pattern (72 bp):
GAAAAAGAAAACAAATTAACATTATTTACTATTTTGAATACCATGAATCAAAAGGTGAACAGTTT
ATAATAT
Found at i:7832422 original size:78 final size:77
Alignment explanation
Indices: 7832329--7832472 Score: 236
Period size: 79 Copynumber: 1.9 Consensus size: 77
7832319 CACGCAAAAC
*
7832329 TAATATTCCGTTCAATCAATAAAAA-TGAATATTGCATGAAAATCCTAATCTATCACAAGAAAAG
1 TAATATTCCATTCAATCAATAAAAATTGAATATTGCATGAAAATCCTAATCTAT--CAAGAAAAG
7832393 TCATAACTCAAATT
64 TCATAACTCAAATT
* *
7832407 TAATATTTCATTCAATCAATAAAAATTGAATATTGCATGAAAATCCTAATTTATCAAGAAAAGTC
1 TAATATTCCATTCAATCAATAAAAATTGAATATTGCATGAAAATCCTAATCTATCAAGAAAAGTC
7832472 A
66 A
7832473 CAATCTGAAT
Statistics
Matches: 62, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
77 12 0.19
78 23 0.37
79 27 0.44
ACGTcount: A:0.47, C:0.15, G:0.08, T:0.31
Consensus pattern (77 bp):
TAATATTCCATTCAATCAATAAAAATTGAATATTGCATGAAAATCCTAATCTATCAAGAAAAGTC
ATAACTCAAATT
Found at i:7832722 original size:17 final size:16
Alignment explanation
Indices: 7832700--7832757 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 16
7832690 AATTAATTTA
7832700 TTTTTATATAAATTAAT
1 TTTTTATATAAA-TAAT
7832717 TTTTTATA-AAATAAT
1 TTTTTATATAAATAAT
7832732 TTTTCTCATA-AAATAACT
1 TTTT-T-ATATAAATAA-T
7832750 TTTTTATA
1 TTTTTATA
7832758 AAGTATTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
15 8 0.21
16 7 0.18
17 18 0.47
18 5 0.13
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTTATATAAATAAT
Found at i:7832724 original size:15 final size:15
Alignment explanation
Indices: 7832694--7832777 Score: 78
Period size: 15 Copynumber: 5.3 Consensus size: 15
7832684 AAAAGAAATT
*
7832694 AATTTATTTTTATATA
1 AATTAATTTTT-TATA
7832710 AATTAATTTTTTATA
1 AATTAATTTTTTATA
*
7832725 AAATAATTTTTCTCATA
1 AATTAATTTTT-T-ATA
*
7832742 AAATAACTTTTTTATA
1 AATTAA-TTTTTTATA
* * *
7832758 AAGTATTTTTTTTTA
1 AATTAATTTTTTATA
7832773 AATTA
1 AATTA
7832778 TGGAATCAGT
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
15 26 0.44
16 18 0.31
17 10 0.17
18 5 0.08
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.56
Consensus pattern (15 bp):
AATTAATTTTTTATA
Found at i:7832730 original size:20 final size:20
Alignment explanation
Indices: 7832684--7832730 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
7832674 TTAGAGGATG
*
7832684 AAAAGAAATTAATTTATTTT
1 AAAATAAATTAATTTATTTT
* *
7832704 TATATAAATTAATTT-TTTAT
1 AAAATAAATTAATTTATTT-T
7832724 AAAATAA
1 AAAATAA
7832731 TTTTTCTCAT
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
AAAATAAATTAATTTATTTT
Found at i:7832758 original size:33 final size:31
Alignment explanation
Indices: 7832699--7832768 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 31
7832689 AAATTAATTT
*
7832699 ATTTTTATATAAATTAATTTTTTATAAAATA
1 ATTTTTATATAAAATAATTTTTTATAAAATA
* *
7832730 ATTTTTCTCATAAAATAACTTTTTTATAAAGTA
1 ATTTTTAT-ATAAAATAA-TTTTTTATAAAATA
*
7832763 TTTTTT
1 ATTTTT
7832769 TTTAAATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 7 0.21
32 8 0.24
33 18 0.55
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.56
Consensus pattern (31 bp):
ATTTTTATATAAAATAATTTTTTATAAAATA
Found at i:7836095 original size:23 final size:24
Alignment explanation
Indices: 7836046--7836095 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
7836036 CAATCATAGT
*
7836046 ATTGCATCGAAGTGTCACATTTCA
1 ATTGCACCGAAGTGTCACATTTCA
7836070 ATTGCACCGAAGTGTCAC-TTTCA
1 ATTGCACCGAAGTGTCACATTTCA
7836093 ATT
1 ATT
7836096 TCACGCATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (24 bp):
ATTGCACCGAAGTGTCACATTTCA
Found at i:7846779 original size:20 final size:21
Alignment explanation
Indices: 7846732--7846780 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
7846722 ATACATATGC
7846732 ATTAAAATAATTAAATATAAA
1 ATTAAAATAATTAAATATAAA
* *
7846753 ATAAAAATAATT-AGTATAAA
1 ATTAAAATAATTAAATATAAA
*
7846773 TTTAAAAT
1 ATTAAAAT
7846781 CGAAAGTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (21 bp):
ATTAAAATAATTAAATATAAA
Found at i:7848861 original size:31 final size:31
Alignment explanation
Indices: 7848826--7848888 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
7848816 AACCTAATGG
7848826 CTTAAAT-AAAGACTTTCAAATAGTTCAGTGA
1 CTTAAATGAAA-ACTTTCAAATAGTTCAGTGA
* * *
7848857 CTTAAATGAAAATTTTCCAATTGTTCAGTGA
1 CTTAAATGAAAACTTTCAAATAGTTCAGTGA
7848888 C
1 C
7848889 CATTTTGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 25 0.89
32 3 0.11
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (31 bp):
CTTAAATGAAAACTTTCAAATAGTTCAGTGA
Found at i:7856192 original size:54 final size:54
Alignment explanation
Indices: 7856115--7856222 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
7856105 GCTACTGCAC
7856115 ATGAGAAAGAGAAAAACATCAAGATCTAAATTGCAGATTACTTTTATATTACTG
1 ATGAGAAAGAGAAAAACATCAAGATCTAAATTGCAGATTACTTTTATATTACTG
7856169 ATGAGAAAGAGAAAAACATCAAGATCTAAATTGCAGATTACTTTTATATTACTG
1 ATGAGAAAGAGAAAAACATCAAGATCTAAATTGCAGATTACTTTTATATTACTG
7856223 CTTATCAAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (54 bp):
ATGAGAAAGAGAAAAACATCAAGATCTAAATTGCAGATTACTTTTATATTACTG
Done.