Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 44 of 198
Found at i:13239146 original size:2 final size:2
Alignment explanation
Indices: 13239139--13239165 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13239129 AAAACATAAC
13239139 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
13239166 AACTTTCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13254391 original size:25 final size:25
Alignment explanation
Indices: 13254358--13254418 Score: 113
Period size: 25 Copynumber: 2.4 Consensus size: 25
13254348 CCCACATCTC
*
13254358 GTGTGAGCATATCGATTCATAGCTT
1 GTGTGAGCATATCGATTCACAGCTT
13254383 GTGTGAGCATATCGATTCACAGCTT
1 GTGTGAGCATATCGATTCACAGCTT
13254408 GTGTGAGCATA
1 GTGTGAGCATA
13254419 AATGTATAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (25 bp):
GTGTGAGCATATCGATTCACAGCTT
Found at i:13254581 original size:13 final size:13
Alignment explanation
Indices: 13254563--13254592 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
13254553 TAATACAGGG
13254563 ACATATGTGAATT
1 ACATATGTGAATT
13254576 ACATATGTGAATT
1 ACATATGTGAATT
13254589 ACAT
1 ACAT
13254593 TGAATTAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (13 bp):
ACATATGTGAATT
Found at i:13255273 original size:10 final size:10
Alignment explanation
Indices: 13255260--13255289 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
13255250 TTTGGTACCC
*
13255260 TTTGATAAGT
1 TTTGGTAAGT
13255270 TTTGGTAAGT
1 TTTGGTAAGT
13255280 TTTGGTAAGT
1 TTTGGTAAGT
13255290 AAACTAATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (10 bp):
TTTGGTAAGT
Found at i:13265411 original size:15 final size:17
Alignment explanation
Indices: 13265377--13265414 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
13265367 TAATTTATTT
13265377 ATTTTTATTATTTTAGA
1 ATTTTTATTATTTTAGA
*
13265394 ATTTTTA-TA-TTTATA
1 ATTTTTATTATTTTAGA
13265409 ATTTTT
1 ATTTTT
13265415 TTCCTTATCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 11 0.55
16 2 0.10
17 7 0.35
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTTATTATTTTAGA
Found at i:13266834 original size:43 final size:44
Alignment explanation
Indices: 13266780--13267104 Score: 346
Period size: 43 Copynumber: 7.8 Consensus size: 44
13266770 TTTTTGCGAG
* * * * * *
13266780 AAGCGTCGCTAAAGGT-TTGTTCTATAGCGGCATTTGTGATAAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGAGAAA
13266823 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGAG-AA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGAGAAA
* *
13266866 AAGCGCCGCTAAAGGTCATGGTCTTTAGTGGCGTTTGT-AGGAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGAGAAA
* ** *
13266909 AAGTGCCGCTAAAGGTCATGGTCTTTAGCATCG-TTGTG-GTAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGAGAAA
**
13266951 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTGT-AGAAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGAGAAA
*
13266994 AAGCGCCGCTAAAGGTCATGG----T--CGGCGTTTGT-AGGAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGAGAAA
* * * *
13267031 AAGCACCGCTAAAGGTC---G--TATAGTGGCGTTTG-GGGAAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGAGAAA
13267069 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTT
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTT
13267105 ATTTCCAAAA
Statistics
Matches: 239, Mismatches: 28, Indels: 30
0.80 0.09 0.10
Matches are distributed among these distances:
34 1 0.00
36 1 0.00
37 30 0.13
38 27 0.11
39 1 0.00
41 1 0.00
42 37 0.15
43 122 0.51
44 19 0.08
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (44 bp):
AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGAGAAA
Found at i:13266975 original size:85 final size:86
Alignment explanation
Indices: 13266804--13267104 Score: 326
Period size: 85 Copynumber: 3.6 Consensus size: 86
13266794 GTTTGTTCTA
* * *
13266804 TAGCGGCATTTGTGATAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGAGAAAAG
1 TAGCGGCGTTTGT-AGAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTTGTGAGAAAAG
**
13266869 CGCCGCTAAAGGTCATGGTCTT
65 CGCCGCTAAAGAACATGGTCTT
* * * *
13266891 TAGTGGCGTTTGTAGGAAAAGTGCCGCTAAAGGTCATGGTCTTTAGCATCG-TTGTG-GTAAAAG
1 TAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTTGTGAG-AAAAG
13266954 CGCCGCTAAAGAACATGGTCTT
65 CGCCGCTAAAGAACATGGTCTT
13266976 TAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGGTCATGGTC----G--GCGTTTGT-AGGAAAAG
1 TAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTTGTGA-GAAAAG
* *
13267034 CACCGCT----AA-A-GGTCGTA
65 CGCCGCTAAAGAACATGGTC-TT
* ** *
13267051 TAGTGGCGTTTGGGGAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTT
1 TAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTT
13267105 ATTTCCAAAA
Statistics
Matches: 185, Mismatches: 18, Indels: 28
0.80 0.08 0.12
Matches are distributed among these distances:
74 4 0.02
75 40 0.22
76 2 0.01
79 3 0.02
80 15 0.08
81 8 0.04
84 1 0.01
85 68 0.37
86 33 0.18
87 11 0.06
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (86 bp):
TAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTTGTGAGAAAAGC
GCCGCTAAAGAACATGGTCTT
Found at i:13267015 original size:128 final size:122
Alignment explanation
Indices: 13266821--13267047 Score: 348
Period size: 128 Copynumber: 1.8 Consensus size: 122
13266811 ATTTGTGATA
**
13266821 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATG
1 AAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATG
**
13266886 GTCTTTAGTGGCGTTTGTAGGAAAAGTGCCGCTAAAGGTCATGGTCTTTAGCATCGTTGTGGT
66 GTC------GGCGTTTGTAGGAAAAGCACCGCTAAAGGTCATGGTCTTTAGCATCGTTGTGGT
13266949 AAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTGT-AGAAAAAGCGCCGCTAAAGGTCAT
1 AAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTGTGAG-AAAAGCGCCGCTAAAGGTCAT
13267013 GGTCGGCGTTTGTAGGAAAAGCACCGCTAAAGGTC
65 GGTCGGCGTTTGTAGGAAAAGCACCGCTAAAGGTC
13267048 GTATAGTGGC
Statistics
Matches: 94, Mismatches: 4, Indels: 8
0.89 0.04 0.08
Matches are distributed among these distances:
122 29 0.31
127 2 0.02
128 63 0.67
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (122 bp):
AAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATG
GTCGGCGTTTGTAGGAAAAGCACCGCTAAAGGTCATGGTCTTTAGCATCGTTGTGGT
Found at i:13267059 original size:38 final size:37
Alignment explanation
Indices: 13266979--13267087 Score: 141
Period size: 37 Copynumber: 2.9 Consensus size: 37
13266969 TGGTCTTTAG
* *
13266979 CGGCGTTTGTAGAAAAAGCGCCGCTAAAGGTCATGGT
1 CGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATAGT
*
13267016 CGGCGTTTGTAGGAAAAGCACCGCTAAAGGTCGTATAGT
1 CGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTC--ATAGT
*
13267055 -GGCGTTTG-GGGAAAAAGCGCCGCTAAAGGTCAT
1 CGGCGTTTGTAGG-AAAAGCGCCGCTAAAGGTCAT
13267088 GGTCTTTAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
36 2 0.03
37 32 0.50
38 26 0.41
39 4 0.06
ACGTcount: A:0.28, C:0.18, G:0.33, T:0.21
Consensus pattern (37 bp):
CGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCATAGT
Found at i:13267741 original size:21 final size:21
Alignment explanation
Indices: 13267717--13267760 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
13267707 TCCAAGATTC
13267717 ATATCATATCCAAGATTACAT
1 ATATCATATCCAAGATTACAT
* *
13267738 ATATCATATCTAAGATTGCAT
1 ATATCATATCCAAGATTACAT
13267759 AT
1 AT
13267761 CCTTGAAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (21 bp):
ATATCATATCCAAGATTACAT
Found at i:13268187 original size:44 final size:44
Alignment explanation
Indices: 13268104--13268595 Score: 461
Period size: 44 Copynumber: 11.2 Consensus size: 44
13268094 ATAAGACTTG
* * *** * *
13268104 TATCTTCGATCTACTTCACCACCAGTATGGGAATACAAGATTTGC
1 TATCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGC
* * * *
13268149 TACCTTTGATCTATTTCATGCCAATACATGAAGACAAGATCTGC
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
* *
13268193 TTTCTTCGATCTACTT--CGCCAATACATGAAGACAAGATCTAC
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
* * *** * *
13268235 -ATTCTTCGATCTACTTCACCACCAGTATGGGAAGGCAAGATCTAC
1 TA-TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGC
*
13268280 TATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGC
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
* *
13268324 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATTTGC
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
* * * * *** *
13268368 TTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAATATCTGC
1 TATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGC
** *
13268413 TATCTTCGATCTACTTCATTCCAATACATGAAGACAAGATCTGT
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
*
13268457 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
* * ** * * * * *
13268501 TTTCTTCGATCTACTTCACGACAACCCAGGGAGGCAAG-CCTGG
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
* * ** * *
13268544 TATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGC
1 TATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGC
13268589 TATCTTC
1 TATCTTC
13268596 AACTTGCTCC
Statistics
Matches: 360, Mismatches: 79, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
42 38 0.11
43 20 0.06
44 205 0.57
45 96 0.27
46 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (44 bp):
TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
Found at i:13268335 original size:89 final size:88
Alignment explanation
Indices: 13268104--13268595 Score: 445
Period size: 89 Copynumber: 5.6 Consensus size: 88
13268094 ATAAGACTTG
* * *** * * * * * **
13268104 TATCTTCGATCTACTTCACCACCAGTATGGGAATACAAGATTTGCTACCTTTGATCTATTTCATG
1 TATCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
13268169 CCAATACATGAAGACAAGATCTGC
65 CCAATACATGAAGACAAGATCTGC
* *
13268193 TTTCTTCGATCTACTT--CGCCAATACATGAAGACAAGATCTAC-ATTCTTCGATCTACTTCACC
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTA-TCTTCGATCTACTTCA-C
* *** * *
13268255 ACCAGTATGGGAAGGCAAGATCTAC
64 ACCAATACATGAAGACAAGATCTGC
* * *
13268280 TATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTATCTTTGATCTACTTCACGC
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACAC
*
13268345 CAATACATGAAGACAAGATTTGC
66 CAATACATGAAGACAAGATCTGC
* * * * *** * **
13268368 TTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAATATCTGCTATCTTCGATCTACTTCATT
1 TATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
*
13268433 CCAATACATGAAGACAAGATCTGT
65 CCAATACATGAAGACAAGATCTGC
* *
13268457 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGA
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
** * * * * *
13268522 -CAACCCAGGGAGGCAAG-CCTGG
65 CCAATACATGAAGACAAGATCTGC
* * ** * *
13268544 TATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTC
1 TATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTATCTTC
13268596 AACTTGCTCC
Statistics
Matches: 322, Mismatches: 73, Indels: 17
0.78 0.18 0.04
Matches are distributed among these distances:
85 1 0.00
86 31 0.10
87 53 0.16
88 109 0.34
89 127 0.39
90 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (88 bp):
TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACAC
CAATACATGAAGACAAGATCTGC
Found at i:13268398 original size:133 final size:133
Alignment explanation
Indices: 13268106--13268519 Score: 652
Period size: 133 Copynumber: 3.1 Consensus size: 133
13268096 AAGACTTGTA
* * * * *
13268106 TCTTCGATCTACTTCACCACCAGTATGGGAATACAAGATTTGCTACCTTTGATCTATTTCATGCC
1 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCC
* * *
13268171 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTT--CGCCAATACATGAAGACAAGATCTA
66 AATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTG
*
13268234 CAT
131 CTT
* * *
13268237 TCTTCGATCTACTTCACCACCAGTATGGGAAGGCAAGATCTACTATCTTCGATCTACTTCACGCC
1 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCC
* *
13268302 AATACATGAAGATAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATTTG
66 AATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTG
13268367 CTT
131 CTT
* * *
13268370 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAATATCTGCTATCTTCGATCTACTTCATTCC
1 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCC
*
13268435 AATACATGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTG
66 AATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTG
13268500 CTT
131 CTT
13268503 TCTTCGATCTACTTCAC
1 TCTTCGATCTACTTCAC
13268520 GACAACCCAG
Statistics
Matches: 257, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
131 92 0.36
133 165 0.64
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (133 bp):
TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCC
AATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTG
CTT
Found at i:13268583 original size:88 final size:88
Alignment explanation
Indices: 13268457--13269245 Score: 1044
Period size: 88 Copynumber: 9.0 Consensus size: 88
13268447 CAAGATCTGT
* * * * * * * * * * * *
13268457 TATCTTTGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACG
1 TATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT
*
13268521 ACAACCCAGGGAGGCAAGCCTGG
66 ACAACCCAGGGAGGCAAGGCTGG
* *
13268544 TATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACTTGCTCCACT
1 TATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT
*
13268609 ACAACCCAGGGAGGCAAGACTGG
66 ACAACCCAGGGAGGCAAGGCTGG
* * *
13268632 TATCTTCGATCTACTTCACTGTCGGTAGAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT
1 TATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT
13268697 ACAACCCAGGGAGGCAAGGCTGG
66 ACAACCCAGGGAGGCAAGGCTGG
* * *
13268720 TATCTTCGATCTGCTTCACTGTTGGTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTTCACT
1 TATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT
*
13268785 ACAACCCAGGGAGGCATGGCTGG
66 ACAACCCAGGGAGGCAAGGCTGG
* ** *
13268808 TATATTCGATCTGCTTCGTTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT
1 TATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT
* *
13268873 ACAACCTAGGGAGGCATGGCTGG
66 ACAACCCAGGGAGGCAAGGCTGG
* * * *
13268896 TATATTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT
1 TATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT
*
13268961 ACAACCTAGGGAGGCAAGGCTGG
66 ACAACCCAGGGAGGCAAGGCTGG
* * *
13268984 TATCTTCGATCTGCTTCACTGTCGATGCAAGAAGGTAAGATCTGCTATCTTCAACCTGCTCCACT
1 TATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT
13269049 ACAACCCAGGGAGGCAAGGCTGG
66 ACAACCCAGGGAGGCAAGGCTGG
* * * * * * *
13269072 TATCTTCGATCTACTTCGCTGTCGATGCGGGAATGCAAGATCTGCTATCTTTAACCTACTCCACT
1 TATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT
* * *
13269137 ACAACCTAGGGAAGCAAGGTTGG
66 ACAACCCAGGGAGGCAAGGCTGG
* * * * * *
13269160 TATCTTTGATCTGCTTC-GTCGTC-AGTACAGGAAGGTAAGATCTGTTATTTTCAACCTGCTCCG
1 TATCTTCGATCTGCTTCACT-GTCGA-TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCA
* *
13269223 CTACAAACCAGGAAGGCAAGGCT
64 CTACAACCCAGGGAGGCAAGGCT
13269246 TTGTGATTTC
Statistics
Matches: 630, Mismatches: 69, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
87 19 0.03
88 611 0.97
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (88 bp):
TATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT
ACAACCCAGGGAGGCAAGGCTGG
Found at i:13268640 original size:264 final size:265
Alignment explanation
Indices: 13268063--13269245 Score: 897
Period size: 264 Copynumber: 4.5 Consensus size: 265
13268053 GGAATTAGTG
* * ** * *
13268063 CTTCAATCTACTCCAC-AGCAACTTCAGGGAGATAAGACTTGTATCTTCGATCTACTTCACCACC
1 CTTCAACCTACTCCACTA-CAAC-CCAGGGAGGCAAGACTGGTATCTTCGATCTACTTCGCCACC
* * * ** * * * * * *
13268127 AGTATG-GGAATACAAGATTTGCTACCTTTGATCTATTTCA-TGCCAATACATGAAGACAAGATC
64 AGTATGAGGAAGACAAGATCTGCTATCTTCAACCTACTCCACT-ACAATACAGGAAGACAAG-GC
* * * * *
13268190 TGCTTTCTTCGATCTACTT--C-GCCAATACATGAAGACAAGATCTAC-ATTCTTCGATCTACTT
127 TGGTATCTTCGATCTACTTCACTGCCAATACATGAAGACAAGATCTGCTA-TCTTCAACCTACTT
* * ** * ** * * * *
13268251 CACCACCA-GTATGGGAAGGCAAGATCTACTATCTTCGATCTACTTCAC-GCCAATACATGAAGA
191 CACTACAACCCA-GGG-AGGCAAG-GCTGGTATCTTCGATCTACTTCACTGTCGATACAGGAAGG
*
13268314 TAAGATCTGCTAT
253 CAAGATCTGCTAT
** * * ** ** * * * * * *
13268327 CTTTGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTCGCCACCA
1 CTTCAACCTACTCCACTACAACCCAGGGAGGCAAGA-CTGGTATCTTCGATCTACTTCGCCACCA
* * * * * * * *
13268392 GTATG-GGAAGACAATATCTGCTATCTTCGATCTACTTCATTCCAATACATGAAGACAAGATCTG
65 GTATGAGGAAGACAAGATCTGCTATCTTCAACCTACTCCACTACAATACAGGAAGACAAG-GCTG
* * * * *
13268456 TTATCTTTGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC
129 GTATCTTCGATCTACTTCACTGCCAATACATGAAGACAAGATCTGCTATCTTCAACCTACTTCAC
* * * *
13268520 GACAACCCAGGGAGGCAAGCCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGAT
194 TACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTACTTCACTGTCGATACAGGAAGGCAAGAT
13268585 CTGCTAT
259 CTGCTAT
* * * *** *
13268592 CTTCAACTTGCTCCACTACAACCCAGGGAGGCAAGACTGGTATCTTCGATCTACTTCACTGTCGG
1 CTTCAACCTACTCCACTACAACCCAGGGAGGCAAGACTGGTATCTTCGATCTACTTCGCCACCAG
* * ** * *
13268657 TA-GAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGT
66 TATGAGGAAGACAAGATCTGCTATCTTCAACCTACTCCACTACAATACAGGAAGACAAGGCTGGT
* **** * * *
13268721 ATCTTCGATCTGCTTCACTGTTGGTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTTCACTA
131 ATCTTCGATCTACTTCACTGCCAATACATGAAGACAAGATCTGCTATCTTCAACCTACTTCACTA
* * * ** *
13268786 CAACCCAGGGAGGCATGGCTGGTATATTCGATCTGCTTCGTTGTCGATGCAGGAAGGCAAGATCT
196 CAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTACTTCACTGTCGATACAGGAAGGCAAGATCT
13268851 GCTAT
261 GCTAT
* * * * * * ***
13268856 CTTCAACCTGCTCCACTACAACCTAGGGAGGCATGGCTGGTATATTCGATCTGCTTCGCTGTCA-
1 CTTCAACCTACTCCACTACAACCCAGGGAGGCAAGACTGGTATCTTCGATCTACTTCGCCACCAG
* * * * *
13268920 -ATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAA-CCTAGGGAGGCAAGGCTG
66 TATG-AGGAAGACAAGATCTGCTATCTTCAACCTACTCCACTACAATAC-AGGAAGACAAGGCTG
* * * * * ** * *
13268983 GTATCTTCGATCTGCTTCACTGTCGATGCAAGAAGGTAAGATCTGCTATCTTCAACCTGCTCCAC
129 GTATCTTCGATCTACTTCACTGCCAATACATGAAGACAAGATCTGCTATCTTCAACCTACTTCAC
* * * *
13269048 TACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTACTTCGCTGTCGATGCGGGAATGCAAGAT
194 TACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTACTTCACTGTCGATACAGGAAGGCAAGAT
13269113 CTGCTAT
259 CTGCTAT
* * * ** * * * **
13269120 CTTTAACCTACTCCACTACAACCTAGGGAAGCAAGGTTGGTATCTTTGATCTGCTTCGTCGTCAG
1 CTTCAACCTACTCCACTACAACCCAGGGAGGCAAGACTGGTATCTTCGATCTACTTCGCCACCAG
* ** * * * * *
13269185 TA-CAGGAAGGTAAGATCTGTTATTTTCAACCTGCTCCGCTACAA-ACCAGGAAGGCAAGGCT
66 TATGAGGAAGACAAGATCTGCTATCTTCAACCTACTCCACTACAATA-CAGGAAGACAAGGCT
13269246 TTGTGATTTC
Statistics
Matches: 772, Mismatches: 131, Indels: 32
0.83 0.14 0.03
Matches are distributed among these distances:
262 1 0.00
263 34 0.04
264 633 0.82
265 54 0.07
266 49 0.06
267 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (265 bp):
CTTCAACCTACTCCACTACAACCCAGGGAGGCAAGACTGGTATCTTCGATCTACTTCGCCACCAG
TATGAGGAAGACAAGATCTGCTATCTTCAACCTACTCCACTACAATACAGGAAGACAAGGCTGGT
ATCTTCGATCTACTTCACTGCCAATACATGAAGACAAGATCTGCTATCTTCAACCTACTTCACTA
CAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTACTTCACTGTCGATACAGGAAGGCAAGATCT
GCTAT
Found at i:13276140 original size:19 final size:19
Alignment explanation
Indices: 13276116--13276187 Score: 108
Period size: 19 Copynumber: 3.7 Consensus size: 19
13276106 CATATCTTCG
* *
13276116 AAGATTGCGTATCATATCC
1 AAGATTGCATATCATATCT
13276135 AAGATTGCATATATCATATCT
1 AAGATTGC--ATATCATATCT
13276156 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
13276175 AAGATTGCATATC
1 AAGATTGCATATC
13276188 CTTGAAGATT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
19 32 0.65
21 17 0.35
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:13276759 original size:50 final size:50
Alignment explanation
Indices: 13276697--13276875 Score: 155
Period size: 49 Copynumber: 3.5 Consensus size: 50
13276687 CAATGTCATA
* * * ** *
13276697 TCCCAGATATGGTCATACATTGGAGTTCTCATATCGGTGTCC-ATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG-CCAACGCCATG
* * *
13276747 TCCCAGACATGGTCTTAC-GGGGACCTCTCATCTTGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
* * ***
13276796 TCCCAGACATGGTCTTACATGGGACCCCTCATAATCTCAGCAATGCCAATTTCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC-G--GTGCCAACGCCATG
13276852 TCCCAGACATGGTCTTACATGGGA
1 TCCCAGACATGGTCTTACATGGGA
13276876 TCTCATTCCT
Statistics
Matches: 104, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
48 2 0.02
49 39 0.38
50 27 0.26
53 1 0.01
54 1 0.01
56 34 0.33
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
Found at i:13281281 original size:16 final size:17
Alignment explanation
Indices: 13281260--13281292 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
13281250 CACATTGAAG
13281260 TGTTTT-TTGAAAACCT
1 TGTTTTATTGAAAACCT
13281276 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
13281293 CTTCTAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.45
Consensus pattern (17 bp):
TGTTTTATTGAAAACCT
Found at i:13282220 original size:32 final size:32
Alignment explanation
Indices: 13282184--13282339 Score: 192
Period size: 32 Copynumber: 5.0 Consensus size: 32
13282174 CCGTAAGTAC
* *
13282184 AGTAATATGATTGGCACAAAGCCATCTGTAGT
1 AGTAATATGATCGGCACAAAGCCATCAGTAGT
* *
13282216 AGTAATATGATCGGCACACAGCCATCAGTAAT
1 AGTAATATGATCGGCACAAAGCCATCAGTAGT
*
13282248 GGTAATATGATCGGCACAAAGCCATC---AGT
1 AGTAATATGATCGGCACAAAGCCATCAGTAGT
* * *
13282277 AGTAATATGATCGGCACATAGCAATCAGTAAT
1 AGTAATATGATCGGCACAAAGCCATCAGTAGT
* * *
13282309 GGTAATATGATCGACACAAATCCATCAGTAG
1 AGTAATATGATCGGCACAAAGCCATCAGTAG
13282340 CATCGCAGCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
29 25 0.24
32 79 0.76
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (32 bp):
AGTAATATGATCGGCACAAAGCCATCAGTAGT
Found at i:13282308 original size:61 final size:61
Alignment explanation
Indices: 13282185--13282339 Score: 238
Period size: 61 Copynumber: 2.5 Consensus size: 61
13282175 CGTAAGTACA
* *
13282185 GTAATATGATTGGCACAAAGCCATCTGTAGTAGTAATATGATCGGCACACAGCCATCAGTAATG
1 GTAATATGATCGGCACAAAGCCATC---AGTAGTAATATGATCGGCACACAGCAATCAGTAATG
*
13282249 GTAATATGATCGGCACAAAGCCATCAGTAGTAATATGATCGGCACATAGCAATCAGTAATG
1 GTAATATGATCGGCACAAAGCCATCAGTAGTAATATGATCGGCACACAGCAATCAGTAATG
* *
13282310 GTAATATGATCGACACAAATCCATCAGTAG
1 GTAATATGATCGGCACAAAGCCATCAGTAG
13282340 CATCGCAGCA
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
61 62 0.72
64 24 0.28
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (61 bp):
GTAATATGATCGGCACAAAGCCATCAGTAGTAATATGATCGGCACACAGCAATCAGTAATG
Found at i:13282532 original size:24 final size:24
Alignment explanation
Indices: 13282505--13282586 Score: 92
Period size: 24 Copynumber: 3.4 Consensus size: 24
13282495 CCATGCTCAG
*
13282505 AATCAGTCACACAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
* * *
13282529 AATCAGTGATACCAATTACAGACA
1 AATCAGTCATACAAATCACAGACA
* **
13282553 AATCTGTCATTTAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
*
13282577 AATCTGTCAT
1 AATCAGTCAT
13282587 TTACATCTCG
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.44, C:0.23, G:0.10, T:0.23
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:13282587 original size:24 final size:24
Alignment explanation
Indices: 13282517--13282638 Score: 118
Period size: 24 Copynumber: 5.1 Consensus size: 24
13282507 TCAGTCACAC
* **
13282517 AAATCACAGACAAATCAGTGATAC
1 AAATCACAGACAAATCAGTCATTT
* * *
13282541 CAATTACAGACAAATCTGTCATTT
1 AAATCACAGACAAATCAGTCATTT
*
13282565 AAATCACAGACAAATCTGTCATTT
1 AAATCACAGACAAATCAGTCATTT
* * * *
13282589 ACATCTCGGACAAATCAATCATTT
1 AAATCACAGACAAATCAGTCATTT
* * *
13282613 ACATCACAGGCAAATCAATCATTT
1 AAATCACAGACAAATCAGTCATTT
13282637 AA
1 AA
13282639 CCCCAAGGGG
Statistics
Matches: 81, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 81 1.00
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.26
Consensus pattern (24 bp):
AAATCACAGACAAATCAGTCATTT
Found at i:13282728 original size:27 final size:27
Alignment explanation
Indices: 13282690--13282768 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
13282680 GGTATTTTGG
13282690 TCATTTTACCCTTCGAGGGCATTACGA
1 TCATTTTACCCTTCGAGGGCATTACGA
* ** *
13282717 TCATTTTACCCTTCGAGGGTATTTTGG
1 TCATTTTACCCTTCGAGGGCATTACGA
*
13282744 TCATTTTACCCTAC-AGGGGCATTAC
1 TCATTTTACCCTTCGA-GGGCATTAC
13282769 CGTCATTAGA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.02
27 42 0.98
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (27 bp):
TCATTTTACCCTTCGAGGGCATTACGA
Found at i:13303266 original size:41 final size:44
Alignment explanation
Indices: 13303165--13303299 Score: 111
Period size: 41 Copynumber: 3.1 Consensus size: 44
13303155 ATATTGAACA
* * * * * *
13303165 ATGCCAATGTGCCAGACGTGGTCTTACATGCT-ATCTCATAT-CG
1 ATGCCAATATCCCAGACATGGTCTTACACG-TAATCACATATATG
*
13303208 ATGCCACTATCCCAGACAAT-GTCTTACACG-AATCA-A-ATATG
1 ATGCCAATATCCCAGAC-ATGGTCTTACACGTAATCACATATATG
* * *
13303249 ATGCCAATGTCCTAGACATGGTCTTACATGTAATCACATATATTG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATATA-TG
13303294 ATGCCA
1 ATGCCA
13303300 TCGTCCCAGA
Statistics
Matches: 73, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
40 4 0.05
41 25 0.34
42 8 0.11
43 24 0.33
44 4 0.05
45 8 0.11
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (44 bp):
ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATATATG
Found at i:13309270 original size:54 final size:54
Alignment explanation
Indices: 13309205--13309586 Score: 414
Period size: 54 Copynumber: 7.1 Consensus size: 54
13309195 ATTCGTCGGC
**
13309205 AAATGACCGAAATAATCCCATAGGGTAAAATGATCGAAATACCCCCAAAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCAAAGGGTA
* * * * *
13309259 AAATGATCGAAACACCCCCATAGGAT-AAATGATTGAAATA-CCCCGAAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCAAAGGGTA
* * * * * *
13309311 AAATGACCGAAATACACCCATAAGGTAAAATGA-CTGCAATGCCCCCGAAGGGAA
1 AAATGACCGAAATACCCCCATAGGGTAAAATGATC-GAAATACCCCCAAAGGGTA
* * * * *
13309365 AAATGACCAAAACACCCCCATAGGGTAAAATGATCAAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCAAAGGGTA
* *
13309419 AAATGACCGAAATACCCCCATAGGGTAAAAT-AACTGAAATACCCCTAAAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTAAAATGATC-GAAATACCCCCAAAGGGTA
** * * ** * *
13309473 AAATGAATGAAATACCCCCATAGGGTAGAATAATTAAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCAAAGGGTA
* * * * *
13309527 AAATGACTGGAACA-CCCCATAGGGTAAAATGATCGAAATACCCCGATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCAAAGGGTA
13309580 AAATGAC
1 AAATGAC
13309587 TGTTATACCC
Statistics
Matches: 272, Mismatches: 50, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
52 32 0.12
53 65 0.24
54 173 0.64
55 2 0.01
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.17
Consensus pattern (54 bp):
AAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCAAAGGGTA
Found at i:13309594 original size:27 final size:27
Alignment explanation
Indices: 13309205--13309597 Score: 324
Period size: 27 Copynumber: 14.7 Consensus size: 27
13309195 ATTCGTCGGC
* *
13309205 AAATGACCGAAATAATCCC-ATAGGGTA
1 AAATGACTGAAAT-ACCCCGATAGGGTA
* *
13309232 AAATGA-TCGAAATACCCCCAAAGGGTA
1 AAATGACT-GAAATACCCCGATAGGGTA
* * *
13309259 AAATGA-TCGAAACACCCCCATAGGAT-
1 AAATGACT-GAAATACCCCGATAGGGTA
*
13309285 AAATGATTGAAATACCCCGA-AGGGTA
1 AAATGACTGAAATACCCCGATAGGGTA
* *
13309311 AAATGACCGAAATACACCC-ATAAGGTA
1 AAATGACTGAAATAC-CCCGATAGGGTA
* * *
13309338 AAATGACTGCAATGCCCCCGA-AGGGAA
1 AAATGACTGAAAT-ACCCCGATAGGGTA
** * *
13309365 AAATGACCAAAACACCCCCATAGGGTA
1 AAATGACTGAAATACCCCGATAGGGTA
*
13309392 AAATGA-TCAAAATACCCTCGA-AGGGTA
1 AAATGACT-GAAATACCC-CGATAGGGTA
* *
13309419 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGACTGAAATACCCCGATAGGGTA
* * *
13309446 AAATAACTGAAATACCCCTAAAGGGTA
1 AAATGACTGAAATACCCCGATAGGGTA
* *
13309473 AAATGAATGAAATACCCCCATAGGGTA
1 AAATGACTGAAATACCCCGATAGGGTA
* * * *
13309500 GAATAATTAAAATACCCTC-ATAGGGTA
1 AAATGACTGAAATACCC-CGATAGGGTA
* *
13309527 AAATGACTGGAACACCCC-ATAGGGTA
1 AAATGACTGAAATACCCCGATAGGGTA
13309553 AAATGA-TCGAAATACCCCGATAGGGTA
1 AAATGACT-GAAATACCCCGATAGGGTA
**
13309580 AAATGACTGTTATACCCC
1 AAATGACTGAAATACCCC
13309598 TAGGAGATGA
Statistics
Matches: 297, Mismatches: 52, Indels: 34
0.78 0.14 0.09
Matches are distributed among these distances:
25 5 0.02
26 64 0.22
27 222 0.75
28 6 0.02
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.17
Consensus pattern (27 bp):
AAATGACTGAAATACCCCGATAGGGTA
Found at i:13309768 original size:26 final size:26
Alignment explanation
Indices: 13309739--13309801 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
13309729 TGATACTAGT
*
13309739 AGCTTTGCTGCGATACTATTACTGGC
1 AGCTTTGCTGCGATACTACTACTGGC
* * *
13309765 AGCTTTGTTGCGATGCTACTACTGGT
1 AGCTTTGCTGCGATACTACTACTGGC
13309791 AGCTTTGCTGC
1 AGCTTTGCTGC
13309802 AACATTGGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.37
Consensus pattern (26 bp):
AGCTTTGCTGCGATACTACTACTGGC
Found at i:13309951 original size:28 final size:28
Alignment explanation
Indices: 13309908--13310001 Score: 109
Period size: 28 Copynumber: 3.4 Consensus size: 28
13309898 ATTACATTGT
* * *
13309908 ACTGATACTGTGTTGGGCTAAGGCACAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
*
13309936 ACTGTTACTGTATTGGGTTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
* * *
13309964 ATTGTTTCTGTATCGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
*
13309992 AATG-TACTGT
1 ACTGTTACTGT
13310002 TACTGAATAG
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 5 0.09
28 51 0.91
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:13314378 original size:19 final size:19
Alignment explanation
Indices: 13314354--13314420 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 19
13314344 AGTGCATTCA
13314354 AACATAATTCACTTGAATT
1 AACATAATTCACTTGAATT
* * * *
13314373 AACATAAAGTAAGTTGCATT
1 AACAT-AATTCACTTGAATT
13314393 CAAACATAATTCACTTGAATT
1 --AACATAATTCACTTGAATT
13314414 AACATAA
1 AACATAA
13314421 AGTAAGCCAT
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
19 12 0.32
20 10 0.27
21 10 0.27
22 5 0.14
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.31
Consensus pattern (19 bp):
AACATAATTCACTTGAATT
Found at i:13314403 original size:41 final size:41
Alignment explanation
Indices: 13314346--13314426 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
13314336 CACATGTTAG
13314346 TGCATTCAAACATAATTCACTTGAATTAACATAAAGTAAGT
1 TGCATTCAAACATAATTCACTTGAATTAACATAAAGTAAGT
13314387 TGCATTCAAACATAATTCACTTGAATTAACATAAAGTAAG
1 TGCATTCAAACATAATTCACTTGAATTAACATAAAGTAAG
13314427 CCATTATACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (41 bp):
TGCATTCAAACATAATTCACTTGAATTAACATAAAGTAAGT
Found at i:13322797 original size:4 final size:4
Alignment explanation
Indices: 13322783--13322816 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
13322773 TTCAAAAAAG
*
13322783 GAAA TAAA GAAA GAAA GAAA GAAA GAAA -AAA GAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA
13322817 CAAAGGTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (4 bp):
GAAA
Found at i:13324081 original size:68 final size:67
Alignment explanation
Indices: 13323972--13324183 Score: 275
Period size: 68 Copynumber: 3.1 Consensus size: 67
13323962 CCTTAGAGAA
* * *
13323972 GGTTACAAGGTGTAACACCATAGCTCTACTATGACAACTAATAGAGTCTTCCAAGACATTAAACA
1 GGTTACAAGGTGTAAGACCATAGCTCAACTATTACAACTAATAGAGTC-TCCAAGACATTAAACA
13324037 TGG
65 TGG
* * *
13324040 GGTTACAAGGTGTAAGACCATAGCTCAACTATTACAACTAATAAAGTC-CATAAGGATATTAAAC
1 GGTTACAAGGTGTAAGACCATAGCTCAACTATTACAACTAATAGAGTCTC-CAA-GACATTAAAC
*
13324104 ATAG
64 ATGG
* * *
13324108 GGTTACAAGGTGTAAGACCATAGCTCAACT-TTGGCAACCAATAGAGTCTGCCAGGACATTAAAC
1 GGTTACAAGGTGTAAGACCATAGCTCAACTATT-ACAACTAATAGAGTCT-CCAAGACATTAAAC
13324172 ATGG
64 ATGG
13324176 GGTTACAA
1 GGTTACAA
13324184 CCATAGCTCG
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
66 1 0.01
67 4 0.03
68 118 0.94
69 1 0.01
70 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (67 bp):
GGTTACAAGGTGTAAGACCATAGCTCAACTATTACAACTAATAGAGTCTCCAAGACATTAAACAT
GG
Found at i:13326080 original size:11 final size:12
Alignment explanation
Indices: 13326049--13326073 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13326039 TAAACTTTCG
13326049 AAATATTTGAAA
1 AAATATTTGAAA
13326061 AAATATTTGAAA
1 AAATATTTGAAA
13326073 A
1 A
13326074 CTATTTGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
AAATATTTGAAA
Found at i:13326781 original size:22 final size:22
Alignment explanation
Indices: 13326755--13326799 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
13326745 AGATAAATAC
13326755 AAATAT-AATCGCATACATATCA
1 AAATATCAATCGCA-ACATATCA
*
13326777 AAATATCAATCTCAACATATCA
1 AAATATCAATCGCAACATATCA
13326799 A
1 A
13326800 TCATCATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.51, C:0.20, G:0.02, T:0.27
Consensus pattern (22 bp):
AAATATCAATCGCAACATATCA
Found at i:13341710 original size:39 final size:39
Alignment explanation
Indices: 13341648--13341825 Score: 187
Period size: 39 Copynumber: 4.6 Consensus size: 39
13341638 TATAAAATTA
* ** * *
13341648 TACCCCTGATCGCACTTTTGTGCCCCTATTGTACTTCGG
1 TACCCCTGATAGCACTTACGTGCCCCTGTTATACTTCGG
* *
13341687 TACCCCTGATAGCAATTACGTGCCCCTGCTATACTTCGG
1 TACCCCTGATAGCACTTACGTGCCCCTGTTATACTTCGG
* * * * *
13341726 CACACCTAATCGCACTTACGTGCCCCTGTTGTACTTCGG
1 TACCCCTGATAGCACTTACGTGCCCCTGTTATACTTCGG
* *
13341765 TACCCCTAGAT-GCACTTACATGCCCCTGTTATATTTCGG
1 TACCCCT-GATAGCACTTACGTGCCCCTGTTATACTTCGG
* * *
13341804 TACTCTTGATAGCACTTTCGTG
1 TACCCCTGATAGCACTTACGTG
13341826 TCATGGTTAC
Statistics
Matches: 113, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
38 3 0.03
39 108 0.96
40 2 0.02
ACGTcount: A:0.18, C:0.32, G:0.17, T:0.33
Consensus pattern (39 bp):
TACCCCTGATAGCACTTACGTGCCCCTGTTATACTTCGG
Found at i:13341789 original size:78 final size:78
Alignment explanation
Indices: 13341656--13341803 Score: 217
Period size: 78 Copynumber: 1.9 Consensus size: 78
13341646 TATACCCCTG
** *
13341656 ATCGCACTTTTGTGCCCCTATTGTACTTCGGTACCCCTGATAGCAATTACGTGCCCCTGCTATAC
1 ATCGCACTTACGTGCCCCTATTGTACTTCGGTACCCCTGATAGCAATTACATGCCCCTGCTATAC
13341721 TTCGGCACACCTA
66 TTCGGCACACCTA
* * *
13341734 ATCGCACTTACGTGCCCCTGTTGTACTTCGGTACCCCTAGAT-GCACTTACATGCCCCTGTTATA
1 ATCGCACTTACGTGCCCCTATTGTACTTCGGTACCCCT-GATAGCAATTACATGCCCCTGCTATA
*
13341798 TTTCGG
65 CTTCGG
13341804 TACTCTTGAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 59 0.95
79 3 0.05
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.32
Consensus pattern (78 bp):
ATCGCACTTACGTGCCCCTATTGTACTTCGGTACCCCTGATAGCAATTACATGCCCCTGCTATAC
TTCGGCACACCTA
Found at i:13345673 original size:25 final size:25
Alignment explanation
Indices: 13345645--13345698 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
13345635 TGTAGTGGCA
*
13345645 AGGTGGGGACATAGGTGTGGCAAGG
1 AGGTGGGGACACAGGTGTGGCAAGG
* * *
13345670 AGGTGGTGTCACAGGTGTGGTAAGG
1 AGGTGGGGACACAGGTGTGGCAAGG
13345695 AGGT
1 AGGT
13345699 TAGAGGTTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.07, G:0.50, T:0.20
Consensus pattern (25 bp):
AGGTGGGGACACAGGTGTGGCAAGG
Found at i:13350408 original size:22 final size:22
Alignment explanation
Indices: 13350380--13350435 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 22
13350370 CTGTGGTATA
13350380 GTGGCAAGGTGGCGACACAGGT
1 GTGGCAAGGTGGCGACACAGGT
*
13350402 GTGGCAAGGAGGTGGCGTCACAGGT
1 GTGGC-A--AGGTGGCGACACAGGT
*
13350427 GTGGTAAGG
1 GTGGCAAGG
13350436 ATGTTAGAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 8 0.28
23 1 0.03
24 1 0.03
25 19 0.66
ACGTcount: A:0.21, C:0.14, G:0.48, T:0.16
Consensus pattern (22 bp):
GTGGCAAGGTGGCGACACAGGT
Found at i:13350423 original size:25 final size:25
Alignment explanation
Indices: 13350386--13350436 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
13350376 TATAGTGGCA
13350386 AGGTGGCGACACAGGTGTGGCAAGG
1 AGGTGGCGACACAGGTGTGGCAAGG
* *
13350411 AGGTGGCGTCACAGGTGTGGTAAGG
1 AGGTGGCGACACAGGTGTGGCAAGG
13350436 A
1 A
13350437 TGTTAGAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.14, G:0.47, T:0.16
Consensus pattern (25 bp):
AGGTGGCGACACAGGTGTGGCAAGG
Found at i:13351746 original size:17 final size:18
Alignment explanation
Indices: 13351714--13351748 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
13351704 AATGGACTGG
13351714 AATGGGCCGAGTGGGCCC
1 AATGGGCCGAGTGGGCCC
*
13351732 AATGGGCC-TGTGGGCCC
1 AATGGGCCGAGTGGGCCC
13351749 TACGCGAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.14, C:0.29, G:0.43, T:0.14
Consensus pattern (18 bp):
AATGGGCCGAGTGGGCCC
Found at i:13356986 original size:32 final size:32
Alignment explanation
Indices: 13356927--13356987 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
13356917 GCCTTTTGAA
* *
13356927 AATATTTACAAAAAGAGACATCTAATTTTTTT
1 AATATTTACAAAAAGAGACACCAAATTTTTTT
13356959 AATATTTACAAAAAGAG-CAACCAAATTTT
1 AATATTTACAAAAAGAGAC-ACCAAATTTT
13356988 GACAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 1 0.04
32 25 0.96
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.34
Consensus pattern (32 bp):
AATATTTACAAAAAGAGACACCAAATTTTTTT
Found at i:13359764 original size:43 final size:43
Alignment explanation
Indices: 13359703--13359984 Score: 357
Period size: 43 Copynumber: 6.6 Consensus size: 43
13359693 GTTGTAAAAG
13359703 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAA
**** * *
13359746 CGCCGCTAAAGAACATGACCTTTAAAATCGCTTGTGTCACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAA
* *
13359789 CGCCGCTAAAGAACATGACCTTTAGTGACGCTTCTATCACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAA
* * * * * *
13359832 TGCTGCTAAACAATATGACCTTTAGCTGCGCTTCAATCACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAA
* * * * * *
13359875 AGCCACTAAAGAACATGACCTTTTGCGGCTCTTGTGTCACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAA
* * *
13359918 CGCTGCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAA
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAA
13359961 CGCCGCTAAAGAACATGACCTTTA
1 CGCCGCTAAAGAACATGACCTTTA
13359985 TATGGCACTT
Statistics
Matches: 199, Mismatches: 40, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 199 1.00
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAA
Found at i:13359937 original size:129 final size:129
Alignment explanation
Indices: 13359703--13359984 Score: 411
Period size: 129 Copynumber: 2.2 Consensus size: 129
13359693 GTTGTAAAAG
* * *
13359703 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCCGCTAAAGAACATGACCTT
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCAATCACAAAAGCCACTAAAGAACATGACCTT
* *
13359768 TAAAATCGCTTGTGTCACAAACGCCGCTAAAGAACATGACCTTTAGTGACGCTTCTATCACAAA
66 TAAAAGCGCTTGTGTCACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTCTATCACAAA
* * * * *
13359832 TGCTGCTAAACAATATGACCTTTAGCTGCGCTTCAATCACAAAAGCCACTAAAGAACATGACCTT
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCAATCACAAAAGCCACTAAAGAACATGACCTT
**** * * *
13359897 TTGCGGCTCTTGTGTCACAAACGCTGCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAA
66 TAAAAGCGCTTGTGTCACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTCTATCACAAA
13359961 CGCCGCTAAAGAACATGACCTTTA
1 CGCCGCTAAAGAACATGACCTTTA
13359985 TATGGCACTT
Statistics
Matches: 132, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
129 132 1.00
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (129 bp):
CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCAATCACAAAAGCCACTAAAGAACATGACCTT
TAAAAGCGCTTGTGTCACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTCTATCACAAA
Found at i:13373817 original size:43 final size:43
Alignment explanation
Indices: 13373747--13374015 Score: 250
Period size: 43 Copynumber: 6.3 Consensus size: 43
13373737 CTAAATTAGT
13373747 GGCGTTTTATAAAAAAGCGCCACTAAAGACCGTGACTTATAGC
1 GGCGTTTTATAAAAAAGCGCCACTAAAGACCGTGACTTATAGC
* * * *
13373790 GGCTTTTTCTAAAAGAGTGCCACTAAAGACCGTGACTTATAGC
1 GGCGTTTTATAAAAAAGCGCCACTAAAGACCGTGACTTATAGC
** * * *
13373833 GGCGTTTTATAAAAAAGCGCTGCTAAAGACCATGACTTATTGT
1 GGCGTTTTATAAAAAAGCGCCACTAAAGACCGTGACTTATAGC
** * * * ** * *
13373876 GGCGTTTTATATTAAAGAGCCGCTAAAGGCCACGAGTTATTGC
1 GGCGTTTTATAAAAAAGCGCCACTAAAGACCGTGACTTATAGC
* * * **
13373919 GGCGTTTTATAGAAAAGCGCCGCTAAAGGCAATGACTTATAGC
1 GGCGTTTTATAAAAAAGCGCCACTAAAGACCGTGACTTATAGC
* *** * * * * *
13373962 GACGTTTTATTGCAAAGCGTCGCTAAAGGCCGAGACTTATAAC
1 GGCGTTTTATAAAAAAGCGCCACTAAAGACCGTGACTTATAGC
13374005 GGCGTTTTATA
1 GGCGTTTTATA
13374016 TGGAAGCGCC
Statistics
Matches: 188, Mismatches: 38, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 188 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (43 bp):
GGCGTTTTATAAAAAAGCGCCACTAAAGACCGTGACTTATAGC
Found at i:13374673 original size:12 final size:11
Alignment explanation
Indices: 13374646--13374683 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 11
13374636 AAAAATAATC
*
13374646 AAAATTAA-TC
1 AAAATTAATTA
13374656 AAAATTAATTA
1 AAAATTAATTA
13374667 TAAAATTAATTA
1 -AAAATTAATTA
13374679 AAAAT
1 AAAAT
13374684 CGACATGTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 8 0.32
11 6 0.24
12 11 0.44
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAATTAATTA
Found at i:13378168 original size:27 final size:27
Alignment explanation
Indices: 13378137--13378899 Score: 768
Period size: 27 Copynumber: 28.4 Consensus size: 27
13378127 CCCTAAAATA
*
13378137 GGTAAAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
13378164 GGTAAAATGATCGAAATA-CCCTCATAG
1 GGTAAAATGACCGAAATACCCCT-ATAG
13378191 GGTAAAATGA-CGAAGATACCTCC-ATAG
1 GGTAAAATGACCGAA-ATACC-CCTATAG
* *
13378218 GGTAAAATGACCGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCTATAG
* *
13378245 GGTAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
13378272 GGTAGAATGACTGAAATA-CCCTCATAA
1 GGTAAAATGACCGAAATACCCCT-ATAG
* *
13378299 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
13378326 GGTAAAATGACCGAAATA-CCCTCATAG
1 GGTAAAATGACCGAAATACCCCT-ATAG
*
13378353 GGTAAAATGACTGAAATA-CCCTCATAG
1 GGTAAAATGACCGAAATACCCCT-ATAG
* * *
13378380 GGTAAAATAATCGAAATACCCC-ATAT
1 GGTAAAATGACCGAAATACCCCTATAG
13378406 GGTAAAATGACCGAAATA-CCCTCATAG
1 GGTAAAATGACCGAAATACCCCT-ATAG
* * *
13378433 GGTAAAATAACTGAAATGCTCCC-ATAG
1 GGTAAAATGACCGAAATAC-CCCTATAG
*
13378460 GGTAGAATGACCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
13378487 GGTAAAATCACCGAAATACTCCC-ATAT
1 GGTAAAATGACCGAAATAC-CCCTATAG
* * *
13378514 GATAAAATGACC-AAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCTATAG
*
13378540 GGTAAAATGACC-AAAGTATCTCC-ATAG
1 GGTAAAATGACCGAAA-TA-CCCCTATAG
* * * * *
13378567 GGTAGAATGACTGAAATGCCCCCATAT
1 GGTAAAATGACCGAAATACCCCTATAG
*
13378594 GGTAGAATGACCGAAATATCCCC-ATAG
1 GGTAAAATGACCGAAATA-CCCCTATAG
* *
13378621 GATAGAATGACCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
13378648 GGTAGAATGACCGAAATA-CCCGATAA
1 GGTAAAATGACCGAAATACCCCTATAG
* *
13378674 GGTAAAATGATCGAAATACCCTTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
13378701 GGTAAAATGACTGAAATACCCCTACT-G
1 GGTAAAATGACCGAAATACCCCTA-TAG
* *
13378728 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
13378755 GGTAAAATGACTGAAATA-TCGTCATAG
1 GGTAAAATGACCGAAATACCCCT-ATAG
** **
13378782 GGTAAAATGATTGGTATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
13378809 GGTAAAATGATCGAAATAACCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
13378836 GGTAGAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
13378863 GGTAGACTGACTGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
13378890 GGTTAAATGA
1 GGTAAAATGA
13378900 TTATTATACC
Statistics
Matches: 622, Mismatches: 86, Indels: 56
0.81 0.11 0.07
Matches are distributed among these distances:
25 6 0.01
26 92 0.15
27 492 0.79
28 27 0.04
29 5 0.01
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAG
Found at i:13379405 original size:22 final size:22
Alignment explanation
Indices: 13379348--13379393 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
13379338 ATATTACATA
13379348 CTATTCACTGTATGATTGATAT
1 CTATTCACTGTATGATTGATAT
13379370 CTATTCACTGTATGATTGATAT
1 CTATTCACTGTATGATTGATAT
13379392 CT
1 CT
13379394 GTTACTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (22 bp):
CTATTCACTGTATGATTGATAT
Found at i:13396913 original size:17 final size:18
Alignment explanation
Indices: 13396881--13396915 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
13396871 AAGAAGTTTT
13396881 CTCGTGTGGGCCCACATG
1 CTCGTGTGGGCCCACATG
*
13396899 CTCGTGT-GTCCCACATG
1 CTCGTGTGGGCCCACATG
13396916 GCCCAAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.11, C:0.34, G:0.29, T:0.26
Consensus pattern (18 bp):
CTCGTGTGGGCCCACATG
Found at i:13403643 original size:22 final size:22
Alignment explanation
Indices: 13403613--13403658 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
13403603 TAGTAGTTGT
*
13403613 AAATCAAAACA-ATAAAAACCCA
1 AAATCAAAA-ATAAAAAAACCCA
*
13403635 AAATTAAAAATAAAAAAACCCA
1 AAATCAAAAATAAAAAAACCCA
13403657 AA
1 AA
13403659 GAGAGCATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.72, C:0.17, G:0.00, T:0.11
Consensus pattern (22 bp):
AAATCAAAAATAAAAAAACCCA
Found at i:13408017 original size:20 final size:20
Alignment explanation
Indices: 13407992--13408134 Score: 89
Period size: 20 Copynumber: 7.3 Consensus size: 20
13407982 TATAATTATA
13407992 CCCCTGATCGTACTTACATG
1 CCCCTGATCGTACTTACATG
* *
13408012 CCCCTG-TTGTACTT-CAGTA
1 CCCCTGATCGTACTTACA-TG
* *
13408031 CCCCTGATCGCACTTACGTG
1 CCCCTGATCGTACTTACATG
* ** *
13408051 CCCCT-ATTGTACTTAGGTA
1 CCCCTGATCGTACTTACATG
* *
13408070 CCCCTGATCGCACTTACGTG
1 CCCCTGATCGTACTTACATG
* *
13408090 CCCCTGGT-GTACTT-CAATA
1 CCCCTGATCGTACTTAC-ATG
* * **
13408109 CTCCTGAACACACTTACATG
1 CCCCTGATCGTACTTACATG
13408129 CCCCTG
1 CCCCTG
13408135 TTATATTTCG
Statistics
Matches: 91, Mismatches: 25, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
18 3 0.03
19 40 0.44
20 46 0.51
21 2 0.02
ACGTcount: A:0.19, C:0.36, G:0.16, T:0.29
Consensus pattern (20 bp):
CCCCTGATCGTACTTACATG
Found at i:13408025 original size:19 final size:19
Alignment explanation
Indices: 13408001--13408103 Score: 82
Period size: 19 Copynumber: 5.3 Consensus size: 19
13407991 ACCCCTGATC
*
13408001 GTACTTACATGCCCCTGTT
1 GTACTTACGTGCCCCTGTT
* *
13408020 GTACTT-CAGTACCCCTGATC
1 GTACTTAC-GTGCCCCTG-TT
* *
13408040 GCACTTACGTGCCCCTATT
1 GTACTTACGTGCCCCTGTT
* * *
13408059 GTACTTAGGTACCCCTGATC
1 GTACTTACGTGCCCCTG-TT
* *
13408079 GCACTTACGTGCCCCTGGT
1 GTACTTACGTGCCCCTGTT
13408098 GTACTT
1 GTACTT
13408104 CAATACTCCT
Statistics
Matches: 62, Mismatches: 18, Indels: 8
0.70 0.20 0.09
Matches are distributed among these distances:
18 1 0.02
19 32 0.52
20 28 0.45
21 1 0.02
ACGTcount: A:0.17, C:0.33, G:0.18, T:0.32
Consensus pattern (19 bp):
GTACTTACGTGCCCCTGTT
Found at i:13408046 original size:39 final size:39
Alignment explanation
Indices: 13407990--13408136 Score: 197
Period size: 39 Copynumber: 3.8 Consensus size: 39
13407980 TATATAATTA
*
13407990 TACCCCTGATCGTACTTACATGCCCCTGTTGTACTTCAG
1 TACCCCTGATCGCACTTACATGCCCCTGTTGTACTTCAG
* *
13408029 TACCCCTGATCGCACTTACGTGCCCCTATTGTACTT-AGG
1 TACCCCTGATCGCACTTACATGCCCCTGTTGTACTTCA-G
* * *
13408068 TACCCCTGATCGCACTTACGTGCCCCTGGTGTACTTCAA
1 TACCCCTGATCGCACTTACATGCCCCTGTTGTACTTCAG
* * *
13408107 TACTCCTGAACACACTTACATGCCCCTGTT
1 TACCCCTGATCGCACTTACATGCCCCTGTT
13408137 ATATTTCGAT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
39 93 0.98
40 1 0.01
ACGTcount: A:0.19, C:0.35, G:0.16, T:0.31
Consensus pattern (39 bp):
TACCCCTGATCGCACTTACATGCCCCTGTTGTACTTCAG
Found at i:13408149 original size:39 final size:39
Alignment explanation
Indices: 13407989--13408162 Score: 154
Period size: 39 Copynumber: 4.5 Consensus size: 39
13407979 TTATATAATT
* **
13407989 ATACCCCTGATCGTACTTACATGCCCCTGTTGTACTTC-
1 ATACCCCTGAACACACTTACATGCCCCTGTTGTACTTCG
* * * * *
13408027 AGTACCCCTGATCGCACTTACGTGCCCCTATTGTACTTAG
1 A-TACCCCTGAACACACTTACATGCCCCTGTTGTACTTCG
* * * * * *
13408067 GTACCCCTGATCGCACTTACGTGCCCCTGGTGTACTTCA
1 ATACCCCTGAACACACTTACATGCCCCTGTTGTACTTCG
* * *
13408106 ATACTCCTGAACACACTTACATGCCCCTGTTATATTTCG
1 ATACCCCTGAACACACTTACATGCCCCTGTTGTACTTCG
*
13408145 ATACTCCTGATA-ACACTT
1 ATACCCCTGA-ACACACTT
13408163 TTGTGCCATG
Statistics
Matches: 115, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
38 1 0.01
39 113 0.98
40 1 0.01
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (39 bp):
ATACCCCTGAACACACTTACATGCCCCTGTTGTACTTCG
Found at i:13408154 original size:78 final size:78
Alignment explanation
Indices: 13407989--13408155 Score: 208
Period size: 78 Copynumber: 2.1 Consensus size: 78
13407979 TTATATAATT
* * * * * *
13407989 ATACCCCTGATCGTACTTACATGCCCCTGTTGTACTTCAGTACCCCTGATCGCACTTACGTGCCC
1 ATACCCCTGATCGCACTTACATGCCCCTGGTGTACTTCAATACCCCTGAACACACTTACATGCCC
*
13408054 CTATTGTACTTAG
66 CTATTATACTTAG
* * *
13408067 GTACCCCTGATCGCACTTACGTGCCCCTGGTGTACTTCAATACTCCTGAACACACTTACATGCCC
1 ATACCCCTGATCGCACTTACATGCCCCTGGTGTACTTCAATACCCCTGAACACACTTACATGCCC
* * *
13408132 CTGTTATATTTCG
66 CTATTATACTTAG
*
13408145 ATACTCCTGAT
1 ATACCCCTGAT
13408156 AACACTTTTG
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.20, C:0.33, G:0.15, T:0.32
Consensus pattern (78 bp):
ATACCCCTGATCGCACTTACATGCCCCTGGTGTACTTCAATACCCCTGAACACACTTACATGCCC
CTATTATACTTAG
Found at i:13409752 original size:22 final size:22
Alignment explanation
Indices: 13409727--13409770 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
13409717 GCTAATCCAT
13409727 CACTTAAACTAATTAACAAGAA
1 CACTTAAACTAATTAACAAGAA
** *
13409749 CACTTATTCTACTTAACAAGAA
1 CACTTAAACTAATTAACAAGAA
13409771 TTTCAACATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (22 bp):
CACTTAAACTAATTAACAAGAA
Found at i:13417418 original size:22 final size:22
Alignment explanation
Indices: 13417377--13417418 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
13417367 GAAGCAAAAC
* * *
13417377 AGGCTTTTAGCGGCCTTTTTTT
1 AGGCTTATAGCGACCCTTTTTT
13417399 AGGCTTATAGCGACCCTTTT
1 AGGCTTATAGCGACCCTTTT
13417419 AAGCGCCGCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (22 bp):
AGGCTTATAGCGACCCTTTTTT
Found at i:13417682 original size:43 final size:43
Alignment explanation
Indices: 13417527--13417785 Score: 173
Period size: 43 Copynumber: 6.0 Consensus size: 43
13417517 ACGCTATTAT
* * * * * * *
13417527 AGAACATGACCTTTAACGACGCTTTTATAAAAAACTCCGCTAA
1 AGAACATAATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAA
* * * * * *
13417570 AGAACATGACCTCTAGTGGTGC-TTTACCCACAAACGCCGCTAA
1 AGAACATAATCTTTAGCGGCGCTTTTA-TCACAAACGCCGCTAA
* * * * *
13417613 AGAACATGATTTTTAGCAGAGCTTTTATCACAAGCGCCGCTAA
1 AGAACATAATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAA
* * * * * *
13417656 AGAGCATAAGCTTTAGCGGCGGTTTTATGACAAACGTCGCTAT
1 AGAACATAATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAA
* ** * * *
13417699 AGAGA-ATGAAT-TTTAGCGACTTTTTTTTCACAAACACCGTTAA
1 AGA-ACAT-AATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAA
* * *
13417742 AGAACATGATCTTTAGAGGCGCTTTTATCACAAACGCTGCTAA
1 AGAACATAATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAA
13417785 A
1 A
13417786 TGTACCCTTC
Statistics
Matches: 162, Mismatches: 48, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
42 7 0.04
43 149 0.92
44 6 0.04
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (43 bp):
AGAACATAATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAA
Found at i:13417689 original size:86 final size:85
Alignment explanation
Indices: 13417549--13417785 Score: 201
Period size: 86 Copynumber: 2.8 Consensus size: 85
13417539 TTAACGACGC
* * * * * * * * *
13417549 TTTTATAAAAAACTCCGCTAAAGAACATGACCTCTAGTGGTGC-TTTACCCACAAACGCCGCTAA
1 TTTTATCACAAACACCGCTAAAGAACATAAGCTTTAGAGGCGCTTTTA-TCACAAACGCCGCTAA
*
13417613 AGA-ACATGATTTTTAGCAGAGC-
65 AGAGA-ATGAATTTTAGC-GA-CT
* * * * * * * *
13417635 TTTTATCACAAGCGCCGCTAAAGAGCATAAGCTTTAGCGGCGGTTTTATGACAAACGTCGCTATA
1 TTTTATCACAAACACCGCTAAAGAACATAAGCTTTAGAGGCGCTTTTATCACAAACGCCGCTAAA
13417700 GAGAATGAATTTTAGCGACTT
66 GAGAATGAATTTTAGCGAC-T
* * * * *
13417721 TTTTTTCACAAACACCGTTAAAGAACATGATCTTTAGAGGCGCTTTTATCACAAACGCTGCTAAA
1 TTTTATCACAAACACCGCTAAAGAACATAAGCTTTAGAGGCGCTTTTATCACAAACGCCGCTAAA
13417786 TGTACCCTTC
Statistics
Matches: 118, Mismatches: 29, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
84 1 0.01
85 2 0.02
86 110 0.93
87 5 0.04
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (85 bp):
TTTTATCACAAACACCGCTAAAGAACATAAGCTTTAGAGGCGCTTTTATCACAAACGCCGCTAAA
GAGAATGAATTTTAGCGACT
Found at i:13420897 original size:31 final size:30
Alignment explanation
Indices: 13420839--13420897 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
13420829 CTTTAAAATT
*
13420839 ATTTTTAATAATAGTATTTTAATTTTTTTC
1 ATTTTTAACAATAGTATTTTAATTTTTTTC
* *
13420869 ATTTTTAACATATA-TATTTTTATGTTTTT
1 ATTTTTAACA-ATAGTATTTTAATTTTTTT
13420898 ACTTTCAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.64
Consensus pattern (30 bp):
ATTTTTAACAATAGTATTTTAATTTTTTTC
Found at i:13421156 original size:7 final size:7
Alignment explanation
Indices: 13421117--13421272 Score: 84
Period size: 7 Copynumber: 22.1 Consensus size: 7
13421107 TTAAAATTAG
13421117 ACCCTAA
1 ACCCTAA
*
13421124 ACACTAA
1 ACCCTAA
*
13421131 ACCATAA
1 ACCCTAA
**
13421138 ACTTTAA
1 ACCCTAA
*
13421145 CCCCTAA
1 ACCCTAA
*
13421152 ACCCTATG
1 ACCCTA-A
*
13421160 CCCCTAA
1 ACCCTAA
*
13421167 CCCCTAA
1 ACCCTAA
13421174 ACCCTAA
1 ACCCTAA
*
13421181 ACTCTATA
1 ACCCTA-A
*
13421189 CCCCT-A
1 ACCCTAA
13421195 ACCCTTAA
1 ACCC-TAA
*
13421203 ACCATAA
1 ACCCTAA
*
13421210 ACCTTAA
1 ACCCTAA
13421217 ACCCTAA
1 ACCCTAA
*
13421224 ACCATAA
1 ACCCTAA
**
13421231 AAACTAA
1 ACCCTAA
*
13421238 A-CTTCAA
1 ACCCT-AA
*
13421245 ACCATAA
1 ACCCTAA
*
13421252 A-CCTAC
1 ACCCTAA
*
13421258 ACCTTAA
1 ACCCTAA
13421265 ACCCTAA
1 ACCCTAA
13421272 A
1 A
13421273 TATGTATATT
Statistics
Matches: 110, Mismatches: 32, Indels: 14
0.71 0.21 0.09
Matches are distributed among these distances:
6 9 0.08
7 86 0.78
8 15 0.14
ACGTcount: A:0.43, C:0.37, G:0.01, T:0.20
Consensus pattern (7 bp):
ACCCTAA
Found at i:13421182 original size:43 final size:43
Alignment explanation
Indices: 13421118--13421199 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
13421108 TAAAATTAGA
*
13421118 CCCTAAACACTAAACCATAAACTTTA-ACCCCTAAACCCTATGC
1 CCCTAAACACTAAACCATAAACTCTATACCCCT-AACCCTATGC
* * *
13421161 CCCTAACCCCTAAACCCTAAACTCTATACCCCTAACCCT
1 CCCTAAACACTAAACCATAAACTCTATACCCCTAACCCT
13421200 TAAACCATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 28 0.82
44 6 0.18
ACGTcount: A:0.35, C:0.43, G:0.01, T:0.21
Consensus pattern (43 bp):
CCCTAAACACTAAACCATAAACTCTATACCCCTAACCCTATGC
Found at i:13421187 original size:29 final size:29
Alignment explanation
Indices: 13421146--13421212 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
13421136 AAACTTTAAC
*
13421146 CCCTAAACCCTATGCCCCTAACCCCTAAA
1 CCCTAAACCCTATACCCCTAACCCCTAAA
* *
13421175 CCCTAAACTCTATACCCCTAACCCTTAAA
1 CCCTAAACCCTATACCCCTAACCCCTAAA
*
13421204 CCATAAACC
1 CCCTAAACC
13421213 TTAAACCCTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.34, C:0.45, G:0.01, T:0.19
Consensus pattern (29 bp):
CCCTAAACCCTATACCCCTAACCCCTAAA
Found at i:13421220 original size:29 final size:29
Alignment explanation
Indices: 13421160--13421220 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
13421150 AAACCCTATG
* *
13421160 CCCCTAACCCCTAAACCCTAAACTCTATA
1 CCCCTAACCCCTAAACCATAAACTCTAAA
*
13421189 CCCCTAACCCTTAAACCATAAAC-CTTAAA
1 CCCCTAACCCCTAAACCATAAACTC-TAAA
13421218 CCC
1 CCC
13421221 TAAACCATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 1 0.04
29 27 0.96
ACGTcount: A:0.36, C:0.44, G:0.00, T:0.20
Consensus pattern (29 bp):
CCCCTAACCCCTAAACCATAAACTCTAAA
Found at i:13421457 original size:14 final size:14
Alignment explanation
Indices: 13421438--13421478 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
13421428 CTATAAAATA
*
13421438 ATAAACCCCAAACC
1 ATAAACCCTAAACC
*
13421452 ATAAACTCTAAACC
1 ATAAACCCTAAACC
13421466 ATAAACCCTAAAC
1 ATAAACCCTAAAC
13421479 TTAAAACTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.51, C:0.34, G:0.00, T:0.15
Consensus pattern (14 bp):
ATAAACCCTAAACC
Found at i:13421463 original size:21 final size:20
Alignment explanation
Indices: 13421439--13421483 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
13421429 TATAAAATAA
*
13421439 TAAACCCCAAACCATAAACT
1 TAAACCACAAACCATAAACT
* *
13421459 CTAAACCATAAACCCTAAACT
1 -TAAACCACAAACCATAAACT
13421480 TAAA
1 TAAA
13421484 ACTCTAATCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (20 bp):
TAAACCACAAACCATAAACT
Found at i:13421730 original size:40 final size:40
Alignment explanation
Indices: 13421671--13421761 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
13421661 CAACTTTTTT
* *
13421671 GCGGCGTTTTGCGAAAAGTGCCGCTAATGCTAGATCTATA
1 GCGGCGTTTTTCGAAAAGTGCCGCTAATGCTAGACCTATA
* * * *
13421711 GCGGCGTTTTTC-AACAAGTGTCGCTAATGCTTGACCTTTT
1 GCGGCGTTTTTCGAA-AAGTGCCGCTAATGCTAGACCTATA
13421751 GCGGCGTTTTT
1 GCGGCGTTTTT
13421762 GTCATAAACA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
39 2 0.05
40 42 0.95
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.34
Consensus pattern (40 bp):
GCGGCGTTTTTCGAAAAGTGCCGCTAATGCTAGACCTATA
Found at i:13422043 original size:14 final size:13
Alignment explanation
Indices: 13422015--13422048 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
13422005 AAATTTCATA
*
13422015 TTTTATTTTTTTG
1 TTTTCTTTTTTTG
13422028 TTTTCTTTTCTTTG
1 TTTTCTTTT-TTTG
13422042 TTTTCTT
1 TTTTCTT
13422049 ATATCTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.03, C:0.09, G:0.06, T:0.82
Consensus pattern (13 bp):
TTTTCTTTTTTTG
Found at i:13423136 original size:32 final size:32
Alignment explanation
Indices: 13423100--13423162 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
13423090 CAACTAATCA
13423100 ATGAGTTA-TCAAATTAAA-TGAATCAATTTATC
1 ATGAGTTACTC-AATTAAAGT-AATCAATTTATC
*
13423132 ATGAGTTACTCAATTCAAGTAATCAATTTAT
1 ATGAGTTACTCAATTAAAGTAATCAATTTAT
13423163 AAGTTTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 25 0.89
33 3 0.11
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (32 bp):
ATGAGTTACTCAATTAAAGTAATCAATTTATC
Found at i:13423344 original size:17 final size:17
Alignment explanation
Indices: 13423312--13423344 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
13423302 CACATGAAAT
13423312 ATAATCATTTTATTAAA
1 ATAATCATTTTATTAAA
13423329 ATAAT-ATTTTAGTTAA
1 ATAATCATTTTA-TTAA
13423345 GATCATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (17 bp):
ATAATCATTTTATTAAA
Found at i:13425060 original size:21 final size:22
Alignment explanation
Indices: 13425025--13425071 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
13425015 TATTCATTTT
13425025 ATTTTATATAAATAAA-TAA-A
1 ATTTTATATAAATAAATTAAGA
*
13425045 ATTTTATTTAAAATAAATTAAGA
1 ATTTTATAT-AAATAAATTAAGA
13425068 ATTT
1 ATTT
13425072 ATTAAGCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 7 0.30
22 3 0.13
23 5 0.22
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
ATTTTATATAAATAAATTAAGA
Found at i:13425999 original size:20 final size:20
Alignment explanation
Indices: 13425971--13426016 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
13425961 AAAAACATTA
13425971 GTTTT-TAGAAAAAAACCGT
1 GTTTTGTAGAAAAAAACCGT
**
13425990 GTTTTGTAGAGTAAAACCGT
1 GTTTTGTAGAAAAAAACCGT
13426010 GTTTTGT
1 GTTTTGT
13426017 GGAGTTGCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (20 bp):
GTTTTGTAGAAAAAAACCGT
Found at i:13426021 original size:20 final size:20
Alignment explanation
Indices: 13425982--13426021 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
13425972 TTTTTAGAAA
13425982 AAAACCGTGTTTTGTAGAGT
1 AAAACCGTGTTTTGTAGAGT
*
13426002 AAAACCGTGTTTTGTGGAGT
1 AAAACCGTGTTTTGTAGAGT
13426022 TGCAGTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.35
Consensus pattern (20 bp):
AAAACCGTGTTTTGTAGAGT
Found at i:13428790 original size:16 final size:16
Alignment explanation
Indices: 13428769--13428799 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
13428759 GACCTCAAAT
13428769 AAGTAATAAATTCTAA
1 AAGTAATAAATTCTAA
13428785 AAGTAATAAATTCTA
1 AAGTAATAAATTCTA
13428800 GGTATTAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (16 bp):
AAGTAATAAATTCTAA
Found at i:13438660 original size:112 final size:113
Alignment explanation
Indices: 13438486--13438813 Score: 378
Period size: 113 Copynumber: 2.9 Consensus size: 113
13438476 AAAATAAGCA
* * * * * * * *
13438486 TTAGCGGCATTTTCGAGAAAGTGCCGCAAAACACCTAATCCCAACGACGCCGTTTTCTGAGCTTT
1 TTAGCGGCGTTTTAGACAAAGCGCCACAAAAAAACTAAGCCCAACGACGCCGTTTTCTGAGCTTT
* *
13438551 CGGGGAATTAGCGGCGTTTTTTCTGAAGCGACGCTAATACCCA-GGAT
66 CGGGGATTTAGCGGCGTTTTTTCTGAAGCGCCGCTAATACCCAGGGAT
* *
13438598 TTAGCGGCGTTTTCA-ACAAAGCGCCACAAAAAAAACTGAGCCCAACGATGCCGTTTTC-GAGCT
1 TTAGCGGCGTTTT-AGACAAAGCGCCAC-AAAAAAACTAAGCCCAACGACGCCGTTTTCTGAGCT
* * * *
13438661 TTCGGGGATTTAGCGGC-ATTTTTCAAGTAAGCGCCGCTAATATCCAGGGCT
64 TTCGGGGATTTAGCGGCGTTTTTTC-TG-AAGCGCCGCTAATACCCAGGGAT
* * * *
13438712 TTAGCGGCGTTTTAGATAAAGCGCCACAAATAACCTAAGCACAACGACGCCGTTTTCTGAGCTTT
1 TTAGCGGCGTTTTAGACAAAGCGCCACAAAAAAACTAAGCCCAACGACGCCGTTTTCTGAGCTTT
* * *
13438777 C-GGGATTTAGTGGCGTTTTTTGTAAAGCGCCGCTAAT
66 CGGGGATTTAGCGGCGTTTTTTCTGAAGCGCCGCTAAT
13438814 GCTCAGTAAT
Statistics
Matches: 181, Mismatches: 27, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
111 6 0.03
112 56 0.31
113 79 0.44
114 40 0.22
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (113 bp):
TTAGCGGCGTTTTAGACAAAGCGCCACAAAAAAACTAAGCCCAACGACGCCGTTTTCTGAGCTTT
CGGGGATTTAGCGGCGTTTTTTCTGAAGCGCCGCTAATACCCAGGGAT
Found at i:13439378 original size:15 final size:14
Alignment explanation
Indices: 13439360--13439403 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
13439350 AAGTTTTATA
13439360 GATTATGGAATTAAG
1 GATTATGG-ATTAAG
*
13439375 GATTATGGATTAGG
1 GATTATGGATTAAG
* *
13439389 GATTCTGGTTTAAG
1 GATTATGGATTAAG
13439403 G
1 G
13439404 GTTAATGTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.30, C:0.02, G:0.32, T:0.36
Consensus pattern (14 bp):
GATTATGGATTAAG
Found at i:13439597 original size:22 final size:22
Alignment explanation
Indices: 13439570--13439622 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
13439560 TTCATGATCG
13439570 GGTTTAGGGGTAATGGATTTAA
1 GGTTTAGGGGTAATGGATTTAA
*
13439592 GGTTTAGGGGTAATGGATTTAG
1 GGTTTAGGGGTAATGGATTTAA
13439614 GGTTTAGGG
1 GGTTTAGGG
13439623 TTTAGGGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.36
Consensus pattern (22 bp):
GGTTTAGGGGTAATGGATTTAA
Found at i:13440067 original size:24 final size:23
Alignment explanation
Indices: 13440004--13440084 Score: 90
Period size: 24 Copynumber: 3.2 Consensus size: 23
13439994 AATAAACAAA
13440004 TAAATAAATAGGTAATTAATTATT
1 TAAAT-AATAGGTAATTAATTATT
*
13440028 TAAATTAATTTGTAGGTAATTAATTGTT
1 TAAA-TAA----TAGGTAATTAATTATT
13440056 TAAATAGATAGGTAATTAATTATT
1 TAAATA-ATAGGTAATTAATTATT
13440080 TAAAT
1 TAAAT
13440085 GAATGATACA
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
24 26 0.53
25 1 0.02
27 2 0.04
28 20 0.41
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (23 bp):
TAAATAATAGGTAATTAATTATT
Found at i:13446538 original size:21 final size:21
Alignment explanation
Indices: 13446512--13446561 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
13446502 CTACAACTTA
*
13446512 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCCGCAGCGAGGG
13446533 AAGCAGAGGCCGCAGCGAGGG
1 AAGCAGAGGCCGCAGCGAGGG
13446554 AAGCAGAG
1 AAGCAGAG
13446562 CAGACCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.20, G:0.48, T:0.00
Consensus pattern (21 bp):
AAGCAGAGGCCGCAGCGAGGG
Found at i:13446935 original size:42 final size:42
Alignment explanation
Indices: 13446881--13447044 Score: 274
Period size: 42 Copynumber: 3.9 Consensus size: 42
13446871 TTTTGTATAA
13446881 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
* *
13446923 AAGCGCCCCTAAAGAACATGGTCTTTAGAGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
* * *
13446965 AAGCACCGCTAAAGAAGATGATCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
*
13447007 AAGCGCCGCTAAAAAACATGGTCTTTAGCGGCGTTTTT
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
13447045 GTTTGTAAAC
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 111 1.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCT
Found at i:13449765 original size:29 final size:28
Alignment explanation
Indices: 13449733--13449812 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 28
13449723 TACATGGATT
*
13449733 TTATTGTTTTATATTTTTATTTATCTTTA
1 TTATT-TTTTATATTTTTATTTATCATTA
* *
13449762 TTATTTATTAT-TTTATATTGTTATCATTA
1 TTATTTTTTATATTTTTA-T-TTATCATTA
*
13449791 TTATTTTAT-TATTTTTATTTAT
1 TTATTTTTTATATTTTTATTTAT
13449813 TTATTCTCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
27 9 0.21
28 8 0.19
29 25 0.60
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (28 bp):
TTATTTTTTATATTTTTATTTATCATTA
Found at i:13449767 original size:13 final size:12
Alignment explanation
Indices: 13449740--13449812 Score: 56
Period size: 14 Copynumber: 5.4 Consensus size: 12
13449730 ATTTTATTGT
13449740 TTTATATTTTTA
1 TTTATATTTTTA
*
13449752 TTTATCTTTATTA
1 TTTATATTT-TTA
13449765 TTTATTATTTTATA
1 TTTA-TATTTT-TA
*
13449779 TTGTTATCATTATTA
1 -T-TTAT-ATTTTTA
13449794 TTTTATTATTTTTA
1 -TTTA-TATTTTTA
13449808 TTTAT
1 TTTAT
13449813 TTATTCTCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
12 9 0.18
13 12 0.24
14 15 0.30
15 7 0.14
16 7 0.14
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.71
Consensus pattern (12 bp):
TTTATATTTTTA
Found at i:13449770 original size:17 final size:17
Alignment explanation
Indices: 13449744--13449817 Score: 54
Period size: 17 Copynumber: 4.6 Consensus size: 17
13449734 TATTGTTTTA
13449744 TATT-TTTATTTATCTT
1 TATTATTTATTTATCTT
13449760 TATTATTTA-TTAT-TT
1 TATTATTTATTTATCTT
* *
13449775 TA-TA-TT-GTTATCAT
1 TATTATTTATTTATCTT
*
13449789 TATTATTT-TATTATTTT
1 TATTATTTAT-TTATCTT
13449806 TATTTATTTATT
1 TA-TTATTTATT
13449818 CTCATTATTG
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
13 6 0.13
14 5 0.11
15 6 0.13
16 10 0.22
17 11 0.24
18 7 0.15
19 1 0.02
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.72
Consensus pattern (17 bp):
TATTATTTATTTATCTT
Found at i:13449776 original size:33 final size:37
Alignment explanation
Indices: 13449753--13449835 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 37
13449743 ATATTTTTAT
13449753 TTATCTTTATTATTTATTATTTTATATTGTTATCATTA
1 TTAT-TTTATTATTTATTATTTTATATTGTTATCATTA
* *
13449791 TTATTTTATTATTT-TTA-TTTAT-TTATTCTCATTA
1 TTATTTTATTATTTATTATTTTATATTGTTATCATTA
*
13449825 TTGTTGTTATT
1 TTATT-TTATT
13449836 GTCTTATTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
34 14 0.34
35 10 0.24
36 3 0.07
37 10 0.24
38 4 0.10
ACGTcount: A:0.23, C:0.05, G:0.04, T:0.69
Consensus pattern (37 bp):
TTATTTTATTATTTATTATTTTATATTGTTATCATTA
Found at i:13449794 original size:22 final size:23
Alignment explanation
Indices: 13449766--13449829 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
13449756 TCTTTATTAT
13449766 TTATTATTTTA-TATTGTTATCA
1 TTATTATTTTATTATTGTTATCA
*
13449788 TTATTATTTTATTATTTTTAT--
1 TTATTATTTTATTATTGTTATCA
*
13449809 TTATTTATTCTCATTATTGTT
1 TTA-TTATT-TTATTATTGTT
13449830 GTTATTGTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.08
22 16 0.44
23 17 0.47
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (23 bp):
TTATTATTTTATTATTGTTATCA
Found at i:13453301 original size:1 final size:1
Alignment explanation
Indices: 13453295--13453435 Score: 57
Period size: 1 Copynumber: 141.0 Consensus size: 1
13453285 AGTTCAGATT
* * * * * * * * * * * *
13453295 AAAAAAACAAACAAAAAAGAAGAAGAAAAAAGAAAAAAAAGAGAAAAAAAAGAGAAAAAAGAGAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * ** * * *
13453360 AAAAAAGAAAAAAGAAAAAAAAGAAAAAAGAAAAGAAAGAAGAAAGGAAAAGAAAAAGAAAAAGA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
13453425 AAAAAAGAAAA
1 AAAAAAAAAAA
13453436 TGAGAGGCCA
Statistics
Matches: 92, Mismatches: 48, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
1 92 1.00
ACGTcount: A:0.82, C:0.01, G:0.16, T:0.00
Consensus pattern (1 bp):
A
Found at i:13453323 original size:11 final size:10
Alignment explanation
Indices: 13453309--13453429 Score: 100
Period size: 9 Copynumber: 12.6 Consensus size: 10
13453299 AAACAAACAA
13453309 AAAAGAAGAAG
1 AAAA-AAGAAG
13453320 AAAAAAGAA-
1 AAAAAAGAAG
13453329 AAAAAAG-AG
1 AAAAAAGAAG
*
13453338 AAAAAAAAGAG
1 AAAAAAGA-AG
13453349 AAAAAAG-AG
1 AAAAAAGAAG
13453358 AAAAAA-AAG
1 AAAAAAGAAG
13453367 AAAAAAGAA-
1 AAAAAAGAAG
13453376 AAAAAAGAA-
1 AAAAAAGAAG
13453385 AAAAGAA-AAG
1 AAAA-AAGAAG
*
13453395 AAAGAAGAA-
1 AAAAAAGAAG
*
13453404 AGGAAAAGAA-
1 A-AAAAAGAAG
13453414 AAAGAAA-AAG
1 AAA-AAAGAAG
13453424 AAAAAA
1 AAAAAA
13453430 AGAAAATGAG
Statistics
Matches: 93, Mismatches: 6, Indels: 24
0.76 0.05 0.20
Matches are distributed among these distances:
8 1 0.01
9 53 0.57
10 27 0.29
11 12 0.13
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAG
Found at i:13453334 original size:9 final size:9
Alignment explanation
Indices: 13453297--13453435 Score: 113
Period size: 10 Copynumber: 14.4 Consensus size: 9
13453287 TTCAGATTAA
*
13453297 AAAAACAAAC
1 AAAAA-AAAG
13453307 AAAAAAGAAG
1 AAAAAA-AAG
13453317 AAGAAAAAAG
1 AA-AAAAAAG
13453327 AAAAAAAAGAG
1 -AAAAAAA-AG
13453338 AAAAAAAAG
1 AAAAAAAAG
13453347 AGAAAAAAGAG
1 A-AAAAAA-AG
13453358 AAAAAAAAG
1 AAAAAAAAG
13453367 --AAAAAAG
1 AAAAAAAAG
13453374 AAAAAAAAG
1 AAAAAAAAG
13453383 AAAAAAGAA-
1 AAAAAA-AAG
*
13453392 AAGAAAGAAG
1 AA-AAAAAAG
*
13453402 AAAGGAAAAG
1 AAA-AAAAAG
*
13453412 AAAAAGAAAA
1 AAAAA-AAAG
13453422 AGAAAAAAAG
1 A-AAAAAAAG
13453432 AAAA
1 AAAA
13453436 TGAGAGGCCA
Statistics
Matches: 108, Mismatches: 7, Indels: 29
0.75 0.05 0.20
Matches are distributed among these distances:
7 7 0.06
9 28 0.26
10 58 0.54
11 15 0.14
ACGTcount: A:0.82, C:0.01, G:0.17, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:13453341 original size:16 final size:16
Alignment explanation
Indices: 13453295--13453435 Score: 130
Period size: 16 Copynumber: 8.8 Consensus size: 16
13453285 AGTTCAGATT
*
13453295 AAAAAAACAAACAAA-A
1 AAAAAAAGAAA-AAAGA
*
13453311 AAGAAGAAGAAAAAAGA
1 AA-AAAAAGAAAAAAGA
13453328 AAAAAAAGAGAAAAA-A
1 AAAAAAAGA-AAAAAGA
* * *
13453344 AAGAGAA-AAAAGAGA
1 AAAAAAAGAAAAAAGA
13453359 AAAAAAAGAAAAAAGA
1 AAAAAAAGAAAAAAGA
13453375 AAAAAAAGAAAAAAGA
1 AAAAAAAGAAAAAAGA
* *
13453391 AAAGAAAGAAGAAAGGA
1 AAAAAAAGAA-AAAAGA
13453408 AAAGAAAA-AGAAAAAG-
1 AAA-AAAAGA-AAAAAGA
13453424 AAAAAAAGAAAA
1 AAAAAAAGAAAA
13453436 TGAGAGGCCA
Statistics
Matches: 103, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
14 4 0.04
15 14 0.14
16 53 0.51
17 28 0.27
18 4 0.04
ACGTcount: A:0.82, C:0.01, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAAAAAAGA
Found at i:13453341 original size:29 final size:27
Alignment explanation
Indices: 13453309--13453435 Score: 137
Period size: 29 Copynumber: 4.4 Consensus size: 27
13453299 AAACAAACAA
*
13453309 AAAAGAAGAAGAAAAAAGAAAAAAAAGAGAA
1 AAAA-AAGAA-AAAAAAGAAAAAAAA-A-AG
* *
13453340 AAAAAAGAGAAAAAAGAGAAAAAAAAG
1 AAAAAAGAAAAAAAAGAAAAAAAAAAG
13453367 AAAAAAGAAAAAAAAGAAAAAAGAAAAG
1 AAAAAAGAAAAAAAAGAAAAAA-AAAAG
* *
13453395 AAAGAAGAAAGGAAAAGAAAAAGAAAAAG
1 AAAAAAGAAA-AAAAAGAAAAA-AAAAAG
13453424 AAAAAAAGAAAA
1 -AAAAAAGAAAA
13453436 TGAGAGGCCA
Statistics
Matches: 83, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
27 21 0.25
28 15 0.18
29 29 0.35
30 14 0.17
31 4 0.05
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (27 bp):
AAAAAAGAAAAAAAAGAAAAAAAAAAG
Found at i:13454806 original size:88 final size:88
Alignment explanation
Indices: 13454657--13455124 Score: 738
Period size: 88 Copynumber: 5.3 Consensus size: 88
13454647 CAGATCAATG
* * * * * *
13454657 AAGATAGCAGATCTTCCCTTCTTGCATTGAAAACGAAGCAGATCGAAGACGCAAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCC
13454722 CTCGGTTGTAGTGGAGCAGGTCA
66 CTCGGTTGTAGTGGAGCAGGTCA
*
13454745 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGAAGATCAAAGACACAAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCC
13454810 CTCGGTTGTAGTGGAGCAGGTCA
66 CTCGGTTGTAGTGGAGCAGGTCA
* *
13454833 AAGATAGCAGATCTTACGTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCC
* *
13454898 CTCAGTTGTAGTGGAGCAGGTCC
66 CTCGGTTGTAGTGGAGCAGGTCA
* *
13454921 AAGATAGCAGATCTTGCCTTCTTGCACTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCC
13454986 CTCGGTTGTAGTGGAGCAGGTCA
66 CTCGGTTGTAGTGGAGCAGGTCA
* * * * *
13455009 AAGATAGTAGATTTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACACAAGCCTTGTCTCC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCC
*
13455074 CTCGGTTGTAGTAGAGCAGGTCA
66 CTCGGTTGTAGTGGAGCAGGTCA
* * *
13455097 GAGATAGTAGATCTTGCCTTCGTGCATT
1 AAGATAGCAGATCTTGCCTTCCTGCATT
13455125 AGCAGATCTT
Statistics
Matches: 351, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 351 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (88 bp):
AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCC
CTCGGTTGTAGTGGAGCAGGTCA
Found at i:13454954 original size:176 final size:176
Alignment explanation
Indices: 13454657--13455362 Score: 944
Period size: 176 Copynumber: 3.9 Consensus size: 176
13454647 CAGATCAATG
* * * * *
13454657 AAGATAGCAGATCTTCCCTTCTTGCATTGAAAACGAAGCAGATCGAAGACGCAAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCC
*
13454722 CTCGGTTGTAGTGGAGCAGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGAAGA
66 CTCGGTTGTAGTGGAGCAGGTCAAAGATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGAAGA
13454787 TCAAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTCA
131 TCAAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTCA
* * *
13454833 AAGATAGCAGATCTTACGTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCC
* * * *
13454898 CTCAGTTGTAGTGGAGCAGGTCCAAGATAGCAGATCTTGCCTTCTTGCACTGACAGCGAAGCAGA
66 CTCGGTTGTAGTGGAGCAGGTCAAAGATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGAAGA
13454963 TCAAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTCA
131 TCAAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTCA
* * * *
13455009 AAGATAGTAGATTTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACACAAGCCTTGTCTCC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCC
* * *
13455074 CTCGGTTGTAGTAGAGCAGGTCAGAGATAGTAGATCTTGCCTTCGTGCATTAGCAGATCTTGCCT
66 CTCGGTTGTAGTGGAGCAGGTCAAAGATAGCAGATCTTGCCTTC---C--T-GC--A-C-TG---
* * **
13455139 TCGTGCATTGACAGCGAAGCAGATCGGAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAG
118 AC-AGC---GA-A--GAA---GATCAAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAG
13455204 GTCA
173 GTCA
*
13455208 GAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCC
* * * *
13455273 CTCGGTTGTAGTGGAACAGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGA
66 CTCGGTTGTAGTGGAGCAGGTCAAAGATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGAAGA
13455338 TCAAAGACACAAGCCTTGCCTCCCT
131 TCAAAGACACAAGCCTTGCCTCCCT
13455363 AAGCAGAAGT
Statistics
Matches: 461, Mismatches: 46, Indels: 46
0.83 0.08 0.08
Matches are distributed among these distances:
176 286 0.62
179 2 0.00
181 2 0.00
182 4 0.01
184 1 0.00
185 2 0.00
186 3 0.01
189 3 0.01
190 2 0.00
191 1 0.00
193 4 0.01
194 2 0.00
196 3 0.01
199 146 0.32
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (176 bp):
AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCC
CTCGGTTGTAGTGGAGCAGGTCAAAGATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGAAGA
TCAAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTCA
Found at i:13455220 original size:111 final size:111
Alignment explanation
Indices: 13455017--13455235 Score: 366
Period size: 111 Copynumber: 2.0 Consensus size: 111
13455007 CAAAGATAGT
* * *
13455017 AGATTTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACACAAGCCTTGTCTCCCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTG
* *
13455082 TAGTAGAGCAGGTCAGAGATAGTAGATCTTGCCTTCGTGCATTAGC
66 TAGTAGAGCAGGTCAGAGATAGCAGATCTTGCCTTCCTGCATTAGC
* *
13455128 AGATCTTGCCTTCGTGCATTGACAGCGAAGCAGATCGGAGACACAAGCCTTGCCTCCCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTG
*
13455193 TAGTGGAGCAGGTCAGAGATAGCAGATCTTGCCTTCCTGCATT
66 TAGTAGAGCAGGTCAGAGATAGCAGATCTTGCCTTCCTGCATT
13455236 GACAGCGAAG
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
111 100 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (111 bp):
AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTG
TAGTAGAGCAGGTCAGAGATAGCAGATCTTGCCTTCCTGCATTAGC
Found at i:13455265 original size:199 final size:199
Alignment explanation
Indices: 13454925--13455323 Score: 672
Period size: 199 Copynumber: 2.0 Consensus size: 199
13454915 AGGTCCAAGA
*
13454925 TAGCAGATCTTGCCTTCTTGCACTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCG
1 TAGCAGATCTTGCCTTCGTGCACTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCG
* * *
13454990 GTTGTAGTGGAGCAGGTCAAAGATAGTAGATTTTGCCTTCCTGCATTGACAGTGAAGCAGATCGA
66 GTTGTAGTGGAGCAGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGA
* * * * *
13455055 AGACACAAGCCTTGTCTCCCTCGGTTGTAGTAGAGCAGGTCAGAGATAGTAGATCTTGCCTTCGT
131 AGACACAAGCCTTGCCTCCCTCGGTTGTAGTAGAACAGGTCAAAGATAGCAGATCTTGCCTTCCT
13455120 GCAT
196 GCAT
* **
13455124 TAGCAGATCTTGCCTTCGTGCATTGACAGCGAAGCAGATCGGAGACACAAGCCTTGCCTCCCTCG
1 TAGCAGATCTTGCCTTCGTGCACTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCG
*
13455189 GTTGTAGTGGAGCAGGTCAGAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGA
66 GTTGTAGTGGAGCAGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGA
*
13455254 AGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAACAGGTCAAAGATAGCAGATCTTGCCTTCCT
131 AGACACAAGCCTTGCCTCCCTCGGTTGTAGTAGAACAGGTCAAAGATAGCAGATCTTGCCTTCCT
13455319 GCAT
196 GCAT
13455323 T
1 T
13455324 GACAGTGAAG
Statistics
Matches: 186, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
199 186 1.00
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (199 bp):
TAGCAGATCTTGCCTTCGTGCACTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCG
GTTGTAGTGGAGCAGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGA
AGACACAAGCCTTGCCTCCCTCGGTTGTAGTAGAACAGGTCAAAGATAGCAGATCTTGCCTTCCT
GCAT
Found at i:13455353 original size:287 final size:287
Alignment explanation
Indices: 13454837--13455362 Score: 910
Period size: 287 Copynumber: 1.8 Consensus size: 287
13454827 AGGTCAAAGA
*
13454837 TAGCAGATCTTACGTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCA
1 TAGCAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCA
*
13454902 GTTGTAGTGGAGCAGGTCCAAGATAGCAGATCTTGCCTTCTTGCACTGACAGCGAAGCAGATCAA
66 GTTGTAGTGGAGCAGGTCCAAGATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCAA
* * *
13454967 AGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTCAAAGATAGTAGATTTTGCCTTCCT
131 AGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAACAGGTCAAAGATAGCAGATCTTGCCTTCCT
* *
13455032 GCATTGACAGTGAAGCAGATCGAAGACACAAGCCTTGTCTCCCTCGGTTGTAGTAGAGCAGGTCA
196 GCATTGACAGTGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTAGAGCAGGTCA
13455097 GAGATAGTAGATCTTGCCTTCGTGCAT
261 GAGATAGTAGATCTTGCCTTCGTGCAT
* * ** *
13455124 TAGCAGATCTTGCCTTCGTGCATTGACAGCGAAGCAGATCGGAGACACAAGCCTTGCCTCCCTCG
1 TAGCAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCA
* *
13455189 GTTGTAGTGGAGCAGGT-CAGAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCG
66 GTTGTAGTGGAGCAGGTCCA-AGATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCA
13455253 AAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAACAGGTCAAAGATAGCAGATCTTGCCTTCC
130 AAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAACAGGTCAAAGATAGCAGATCTTGCCTTCC
13455318 TGCATTGACAGTGAAGCAGATCAAAGACACAAGCCTTGCCTCCCT
195 TGCATTGACAGTGAAGCAGATCAAAGACACAAGCCTTGCCTCCCT
13455363 AAGCAGAAGT
Statistics
Matches: 224, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
286 2 0.01
287 222 0.99
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.23
Consensus pattern (287 bp):
TAGCAGATCTTACCTTCCTGCATTGACAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCA
GTTGTAGTGGAGCAGGTCCAAGATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCAA
AGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAACAGGTCAAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGTGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTAGAGCAGGTCA
GAGATAGTAGATCTTGCCTTCGTGCAT
Found at i:13455356 original size:44 final size:44
Alignment explanation
Indices: 13455132--13455358 Score: 162
Period size: 44 Copynumber: 5.2 Consensus size: 44
13455122 ATTAGCAGAT
* * **
13455132 CTTGCCTTCGTGCATTGACAGCGAAGCAGATCGGAGACACAAGC
1 CTTGCCTTCCTGCATTGACAGTGAAGCAGATCAAAGACACAAGC
* * * * * * * *
13455176 CTTGCCTCCCT-CGGTTG-TAGTGGAGCAGGTCAGAGATAGC-AGAT
1 CTTGCCTTCCTGC-ATTGACAGTGAAGCAGATCAAAGACA-CAAG-C
* *
13455220 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGC
1 CTTGCCTTCCTGCATTGACAGTGAAGCAGATCAAAGACACAAGC
* * * * * *
13455264 CTTGCCTCCCT-CGGTTG-TAGTGGAA-CAGGTCAAAGATAGC-AGAT
1 CTTGCCTTCCTGC-ATTGACAGT-GAAGCAGATCAAAGACA-CAAG-C
13455308 CTTGCCTTCCTGCATTGACAGTGAAGCAGATCAAAGACACAAGC
1 CTTGCCTTCCTGCATTGACAGTGAAGCAGATCAAAGACACAAGC
13455352 CTTGCCT
1 CTTGCCT
13455359 CCCTAAGCAG
Statistics
Matches: 135, Mismatches: 34, Indels: 28
0.69 0.17 0.14
Matches are distributed among these distances:
43 33 0.24
44 68 0.50
45 34 0.25
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (44 bp):
CTTGCCTTCCTGCATTGACAGTGAAGCAGATCAAAGACACAAGC
Found at i:13455375 original size:88 final size:88
Alignment explanation
Indices: 13455124--13455362 Score: 424
Period size: 88 Copynumber: 2.7 Consensus size: 88
13455114 CTTCGTGCAT
* *
13455124 TAGCAGATCTTGCCTTCGTGCATTGACAGCGAAGCAGATCGGAGACACAAGCCTTGCCTCCCTCG
1 TAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCG
* *
13455189 GTTGTAGTGGAGCAGGTCAGAGA
66 GTTGTAGTGGAACAGGTCAAAGA
13455212 TAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCG
1 TAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCG
13455277 GTTGTAGTGGAACAGGTCAAAGA
66 GTTGTAGTGGAACAGGTCAAAGA
* *
13455300 TAGCAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATCAAAGACACAAGCCTTGCCTCCCT
1 TAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCT
13455363 AAGCAGAAGT
Statistics
Matches: 145, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 145 1.00
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (88 bp):
TAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCG
GTTGTAGTGGAACAGGTCAAAGA
Found at i:13455381 original size:43 final size:41
Alignment explanation
Indices: 13455244--13455382 Score: 100
Period size: 43 Copynumber: 3.2 Consensus size: 41
13455234 TTGACAGCGA
* ** *
13455244 AGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGG
1 AGCAGATCAAAGACACAAGCCTTGCCTCCCT--GCAGAAGTGG
* * * * * *
13455287 AACAGGTCAAAGATAGC-AGATCTTGCCTTCCTGCATTGACAGTGA
1 AGCAGATCAAAGACA-CAAG-CCTTGCCTCCCTGCA--GA-AGTGG
13455332 AGCAGATCAAAGACACAAGCCTTGCCTCCCTAAGCAGAAGTGG
1 AGCAGATCAAAGACACAAGCCTTGCCTCCCT--GCAGAAGTGG
13455375 AGCAGATC
1 AGCAGATC
13455383 GAGTAATGGC
Statistics
Matches: 72, Mismatches: 16, Indels: 16
0.69 0.15 0.15
Matches are distributed among these distances:
42 1 0.01
43 25 0.35
44 25 0.35
45 18 0.25
46 3 0.04
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.19
Consensus pattern (41 bp):
AGCAGATCAAAGACACAAGCCTTGCCTCCCTGCAGAAGTGG
Found at i:13457618 original size:2 final size:2
Alignment explanation
Indices: 13457613--13457642 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
13457603 ATATTCACAA
13457613 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13457643 GCATTATCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13457762 original size:17 final size:16
Alignment explanation
Indices: 13457742--13457820 Score: 74
Period size: 17 Copynumber: 4.9 Consensus size: 16
13457732 TGTTTTATAT
13457742 TTTATTTATCTTTATTA
1 TTTA-TTATCTTTATTA
13457759 TTTATTAT-TTTA-TA
1 TTTATTATCTTTATTA
* *
13457773 -TTGTTATCATTATTA
1 TTTATTATCTTTATTA
*
13457788 TTTTATTATTTTTATTTA
1 -TTTATTATCTTTA-TTA
*
13457806 TTTATTATCATTATT
1 TTTATTATCTTTATT
13457821 GTTGTTATTG
Statistics
Matches: 50, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
13 6 0.12
14 5 0.10
15 6 0.12
16 6 0.12
17 24 0.48
18 3 0.06
ACGTcount: A:0.25, C:0.04, G:0.01, T:0.70
Consensus pattern (16 bp):
TTTATTATCTTTATTA
Found at i:13457766 original size:3 final size:3
Alignment explanation
Indices: 13457753--13457820 Score: 52
Period size: 3 Copynumber: 22.7 Consensus size: 3
13457743 TTATTTATCT
* *
13457753 TTA TTA TTTA TTA TT- TTA -TA TTG TTA TCA TTA TTA TT- TTA TTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
13457796 TTT TTA TTTA TTTA TTA TCA TTA TT
1 TTA TTA -TTA -TTA TTA TTA TTA TT
13457821 GTTGTTATTG
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
2 6 0.12
3 36 0.69
4 10 0.19
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:13457785 original size:22 final size:23
Alignment explanation
Indices: 13457760--13457823 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
13457750 TCTTTATTAT
13457760 TTATTATTTTA-TATTGTTATCA
1 TTATTATTTTATTATTGTTATCA
*
13457782 TTATTATTTTATTATTTTTAT--
1 TTATTATTTTATTATTGTTATCA
*
13457803 TTATTTATTATCATTATTGTT
1 TTA-TTATT-TTATTATTGTT
13457824 GTTATTGTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.08
22 16 0.44
23 17 0.47
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (23 bp):
TTATTATTTTATTATTGTTATCA
Found at i:13457810 original size:25 final size:25
Alignment explanation
Indices: 13457727--13457813 Score: 81
Period size: 25 Copynumber: 3.3 Consensus size: 25
13457717 ATACATGGAT
*
13457727 TTTATTGTTTTAT-A-TTTTATTTA
1 TTTATTATTTTATTATTTTTATTTA
13457750 TCTTTATTA-TTTATTATTTTATATTGTTA
1 --TTTATTATTTTATTATTTT-TA-T-TTA
13457779 TCATTATTATTTTATTATTTTTATTTA
1 T--TTATTATTTTATTATTTTTATTTA
13457806 TTTATTAT
1 TTTATTAT
13457814 CATTATTGTT
Statistics
Matches: 53, Mismatches: 1, Indels: 16
0.76 0.01 0.23
Matches are distributed among these distances:
24 5 0.09
25 14 0.26
26 3 0.06
27 7 0.13
28 2 0.04
29 11 0.21
30 11 0.21
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (25 bp):
TTTATTATTTTATTATTTTTATTTA
Found at i:13458737 original size:2 final size:2
Alignment explanation
Indices: 13458730--13458796 Score: 134
Period size: 2 Copynumber: 33.5 Consensus size: 2
13458720 CCTAAAATAA
13458730 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13458772 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
13458797 AGGAAAAGAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:13460093 original size:11 final size:11
Alignment explanation
Indices: 13460079--13460105 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
13460069 TTTTTAATTA
13460079 TTTTATTTTCC
1 TTTTATTTTCC
13460090 TTTTATTTTCC
1 TTTTATTTTCC
13460101 TTTTA
1 TTTTA
13460106 CATGATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTATTTTCC
Found at i:13460517 original size:195 final size:195
Alignment explanation
Indices: 13460185--13460549 Score: 586
Period size: 195 Copynumber: 1.9 Consensus size: 195
13460175 TCCTCTAGAG
* * * * *
13460185 GTCAAGACACTAGCAATTAATTCTATTTTCGAACTTCATCACTTGCCTACCTGATGGTATCAAAA
1 GTCAAGACAATAGCAATTAACTCTATTTTCGAACTTCATCACTTGCCTACCTGACGGGACCAAAA
* *
13460250 AAGTTATTTCATCGGTCGAAATCAATATTTTCAGAACTAGACCTAGAACCAATCAAGGTACTGGT
66 AAGTTATTTCATCGATCGAAATCAATATTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGT
*
13460315 CCAAATATATGGGTTGAACCGATTGACCCGCGAATCGATATAGACCGATTAAACTAAGTTAAAAA
131 CCAAATATATGGGTTGAACCAATTGACCCGCGAATCGATATAGACCGATTAAACTAAGTTAAAAA
* *
13460380 GTCAAGACAATAGCGATTAACTCTATTTTCGAACTTCATCACTTGCCTACCTGACGGGACCAGAA
1 GTCAAGACAATAGCAATTAACTCTATTTTCGAACTTCATCACTTGCCTACCTGACGGGACCAAAA
* * * *
13460445 AAGTTTTTTCATCGATCGAAATCAATATTTTCAGAACTAGACCGAGAATCGATCAAGGTATTGGT
66 AAGTTATTTCATCGATCGAAATCAATATTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGT
* *
13460510 TCAAATATATGGGTTGAATCAATTGACCCGCGAATCGATA
131 CCAAATATATGGGTTGAACCAATTGACCCGCGAATCGATA
13460550 CAATCCGGTT
Statistics
Matches: 154, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
195 154 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (195 bp):
GTCAAGACAATAGCAATTAACTCTATTTTCGAACTTCATCACTTGCCTACCTGACGGGACCAAAA
AAGTTATTTCATCGATCGAAATCAATATTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGT
CCAAATATATGGGTTGAACCAATTGACCCGCGAATCGATATAGACCGATTAAACTAAGTTAAAAA
Found at i:13460622 original size:14 final size:14
Alignment explanation
Indices: 13460599--13460647 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 14
13460589 ATTTTCTTTT
13460599 TTTTAATAATTCTA
1 TTTTAATAATTCTA
*
13460613 TTTTATTAA---T-
1 TTTTAATAATTCTA
13460623 TTTTAATAATTCTA
1 TTTTAATAATTCTA
*
13460637 TTTTATTAATT
1 TTTTAATAATT
13460648 TTTAATAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
10 8 0.29
11 1 0.04
13 1 0.04
14 18 0.64
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTAATAATTCTA
Found at i:13460630 original size:24 final size:24
Alignment explanation
Indices: 13460598--13460662 Score: 123
Period size: 24 Copynumber: 2.8 Consensus size: 24
13460588 TATTTTCTTT
13460598 TTTTTAATAATTCTATTTTATTAA
1 TTTTTAATAATTCTATTTTATTAA
13460622 TTTTTAATAATTCTATTTTATTAA
1 TTTTTAATAATTCTATTTTATTAA
13460646 TTTTTAATAATT-TATTT
1 TTTTTAATAATTCTATTT
13460663 AATCGAACCA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
23 5 0.12
24 36 0.88
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (24 bp):
TTTTTAATAATTCTATTTTATTAA
Found at i:13465093 original size:22 final size:21
Alignment explanation
Indices: 13465058--13465116 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
13465048 AAAGGGTATC
* *
13465058 TACAAATTAAATCTATAAGAT
1 TACAAATCATATCTATAAGAT
*
13465079 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TATAAGAT
* *
13465102 TGCATATCATATCTA
1 TACAAATCATATCTA
13465117 AGATTGCGTA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTATAAGAT
Found at i:13465784 original size:131 final size:131
Alignment explanation
Indices: 13465548--13465962 Score: 492
Period size: 132 Copynumber: 3.1 Consensus size: 131
13465538 AGGAATTGGT
* * *
13465548 AATTTCAACCTACTCCACTGCAACTTCAGGGGGATA-AGGCTGGTGGCTTAAATCTGCTTCCCTA
1 AATTTCAACCTACTCCACTGCTAC-TCAGGGAGATAGA-ACTGGTGGCTTAAATCTGCTTCCCTA
* * * *
13465612 CTACCTTGGGAAGATAAGACTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACATGATA
64 CTACCTTGGAAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATA
13465677 AACA
129 AA-A
* * *
13465681 AATTTCAACCTACTCTACTACTACTCAGGGAGATAGAACTGGTGGCTTAAATCCGCTT-CCTACT
1 AATTTCAACCTACTCCACTGCTACTCAGGGAGATAGAACTGGTGGCTTAAATCTGCTTCCCTACT
* * * **
13465745 ATCTTCGAAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTA
66 ACCTTGGAAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATAAA
*
13465810 T
131 A
* *** * * *
13465811 AATCTTCAACCTACTCCACTGCTGCTCAAAAAGATAGGACTGGTGGTTTAGATCTGCTTCCCTAC
1 AAT-TTCAACCTACTCCACTGCTACTCAGGGAGATAGAACTGGTGGCTTAAATCTGCTTCCCTAC
* * * * **
13465876 TACCTTGGAAAAATAAGATTCGCCGTCTTTGGTCTGCTCCACTATTGCTTAAGGAGACAGGATCT
65 TACCTTGGAAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATAA
*
13465941 AC
130 AA
*
13465943 AATCTTCAACCTATTCCACT
1 AAT-TTCAACCTACTCCACT
13465963 ACAAAGTCAA
Statistics
Matches: 244, Mismatches: 35, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
130 3 0.01
131 107 0.44
132 112 0.46
133 22 0.09
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (131 bp):
AATTTCAACCTACTCCACTGCTACTCAGGGAGATAGAACTGGTGGCTTAAATCTGCTTCCCTACT
ACCTTGGAAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATAAA
A
Found at i:13465932 original size:132 final size:132
Alignment explanation
Indices: 13465587--13465964 Score: 499
Period size: 131 Copynumber: 2.9 Consensus size: 132
13465577 GGGGATAAGG
* * *
13465587 CTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGACTCACCGTCTTTGATCTGCTC
1 CTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGATTCGCCGTCTTTGATCTGCTC
* ** * ***
13465652 CACTACTGCTTAGGGAGACATGATAAACAAAT-TTCAACCTACTCTACTACTACTCAGGGAGATA
66 CACTACTGCTTAGGGAGACAGGATCTA-AAATCTTCAACCTACTCCACTACTACTCAAAAAGATA
13465716 GAA
130 GAA
* * *
13465719 CTGGTGGCTTAAATCCGCTT-CCTACTATCTTCGAAAGATAAGATTCGCCGTCTTTGATCTGCTC
1 CTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGATTCGCCGTCTTTGATCTGCTC
* * * *
13465783 CACTACTGCTTAGGGAGATAGGATCTATAATCTTCAACCTACTCCACTGCTGCTCAAAAAGATAG
66 CACTACTGCTTAGGGAGACAGGATCTAAAATCTTCAACCTACTCCACTACTACTCAAAAAGATAG
*
13465848 GA
131 AA
* * * *
13465850 CTGGTGGTTTAGATCTGCTTCCCTACTACCTTGGAAAAATAAGATTCGCCGTCTTTGGTCTGCTC
1 CTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGATTCGCCGTCTTTGATCTGCTC
* * * *
13465915 CACTATTGCTTAAGGAGACAGGATCTACAATCTTCAACCTATTCCACTAC
66 CACTACTGCTTAGGGAGACAGGATCTAAAATCTTCAACCTACTCCACTAC
13465965 AAAGTCAAAG
Statistics
Matches: 213, Mismatches: 31, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
130 3 0.01
131 107 0.50
132 103 0.48
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (132 bp):
CTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGATTCGCCGTCTTTGATCTGCTC
CACTACTGCTTAGGGAGACAGGATCTAAAATCTTCAACCTACTCCACTACTACTCAAAAAGATAG
AA
Found at i:13466098 original size:89 final size:89
Alignment explanation
Indices: 13465964--13466221 Score: 306
Period size: 89 Copynumber: 2.9 Consensus size: 89
13465954 TATTCCACTA
* * * * * *
13465964 CAAAGTCAAAGAGGCAAGGCTGGTGT-TTTCGATTTGCTTCACTGCCAGTACAGGAAGAGAA-AT
1 CAAACTCAAGGAGGCAAGGCTGGTGTCTTT-GATCTGCTTCGCTGCCAATACAGGAAGACAAGA-
* * *
13466027 TCTACTGTTTTGAGTCTG-CTCTGCTG
64 TCTACTATCTTCAGTCTGTCTC-GCTG
* *
13466053 CAAACTCAAGGAGGCAATGCTGGTGTCTTTGATCTGCTTTGCTGCCAATACAGGAAGACAAGATC
1 CAAACTCAAGGAGGCAAGGCTGGTGTCTTTGATCTGCTTCGCTGCCAATACAGGAAGACAAGATC
*
13466118 TACTATCTTCAGTCTGTTTCGCTG
66 TACTATCTTCAGTCTGTCTCGCTG
* * * *
13466142 CAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGAAAGCCAAGATC
1 CAAACTCAAGGAGGCAAGGCTGGTGTCTTTGATCTGCTTCGCTGCCAATACAGGAAGACAAGATC
* *
13466207 TGCTATCATCAGTCT
66 TACTATCTTCAGTCT
13466222 ACTCTGATGT
Statistics
Matches: 146, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
89 140 0.96
90 6 0.04
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (89 bp):
CAAACTCAAGGAGGCAAGGCTGGTGTCTTTGATCTGCTTCGCTGCCAATACAGGAAGACAAGATC
TACTATCTTCAGTCTGTCTCGCTG
Found at i:13466183 original size:44 final size:44
Alignment explanation
Indices: 13466041--13466186 Score: 127
Period size: 44 Copynumber: 3.3 Consensus size: 44
13466031 CTGTTTTGAG
* * *
13466041 TCTGC-TCTGCTGCAAACTCAAGGAGGCAATGCTGGTGTCTTTGA
1 TCTGCTTC-GCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGA
* * * * * ** *
13466085 TCTGCTTTGCTGCCAA-TACAGGAAGACAAGATCTACTATCTTC-A
1 TCTGCTTCGCTGCAAACT-CAGGGAGGCAAG-GCTGGTGTCTTCGA
*
13466129 GTCTGTTTCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGA
1 -TCTGCTTCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGA
13466174 TCTGCTTCGCTGC
1 TCTGCTTCGCTGC
13466187 CAATACAGAA
Statistics
Matches: 75, Mismatches: 21, Indels: 12
0.69 0.19 0.11
Matches are distributed among these distances:
43 1 0.01
44 41 0.55
45 32 0.43
46 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (44 bp):
TCTGCTTCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGA
Found at i:13466595 original size:41 final size:41
Alignment explanation
Indices: 13466542--13466656 Score: 124
Period size: 44 Copynumber: 2.7 Consensus size: 41
13466532 TCTTCAGTCT
*
13466542 GCTCCACTACAACTTTAGGGAGATAAGATTCA-CTTTAATCC
1 GCTCCACTACAACTTTAGGGAGATAAGATT-AGATTTAATCC
* * *
13466583 GCTCCACTACAACTTCAGGGAGATAGGATTATTGGATTTAATCT
1 GCTCCACTACAACTTTAGGGAGATAAGATTA---GATTTAATCC
* * *
13466627 GGTCCACTGCAACTTTAGGAAGATAAGATT
1 GCTCCACTACAACTTTAGGGAGATAAGATT
13466657 TTCCATGATC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
40 1 0.02
41 28 0.46
44 32 0.52
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (41 bp):
GCTCCACTACAACTTTAGGGAGATAAGATTAGATTTAATCC
Found at i:13466970 original size:45 final size:45
Alignment explanation
Indices: 13466805--13467076 Score: 241
Period size: 44 Copynumber: 6.1 Consensus size: 45
13466795 GCTTTCTTCA
* * * *
13466805 ATAAGACTTG-TAACTTTAATCCGCTCCACTGTAACTTCAGGAAG
1 ATAAGACTTGTTATCTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * ** *
13466849 ATAGGA-TTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAGAG
1 ATAAGACTTGTTATCTTTAATCTGCTCCACTGCAACTTCAGGGAG
* ** * * *
13466893 ATAAGATTTGCCATCTTTAGTGTTC-CCAACTGCAACTTCAGGG-G
1 ATAAGACTTGTTATCTTTAATCTGCTCC-ACTGCAACTTCAGGGAG
* * * *
13466937 AATAAGACTTGTTTTCTTCAGTCTGCTCCACTGCAACTTTAGGGAG
1 -ATAAGACTTGTTATCTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * * *
13466983 ATAAGACTTG-TAACTTTAATCCGCTCCACTGCAACCTCAGAGAG
1 ATAAGACTTGTTATCTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * **
13467027 ATAGGAC-TATTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
1 ATAAGACTTGTTATCTTTAATCTGCTCCACTGCAACTTCAGGGAG
13467071 ATAAGA
1 ATAAGA
13467077 TTCGCCATGT
Statistics
Matches: 179, Mismatches: 42, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
43 3 0.02
44 107 0.60
45 66 0.37
46 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (45 bp):
ATAAGACTTGTTATCTTTAATCTGCTCCACTGCAACTTCAGGGAG
Found at i:13468383 original size:20 final size:20
Alignment explanation
Indices: 13468347--13468384 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
13468337 TGGCCTCTCC
*
13468347 TATTTTTTTCTTCTTTTTTT
1 TATTTTTTTATTCTTTTTTT
13468367 TATTTTTTTGATT-TTTTT
1 TATTTTTTT-ATTCTTTTT
13468385 CTCAAGGCGC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.08, C:0.05, G:0.03, T:0.84
Consensus pattern (20 bp):
TATTTTTTTATTCTTTTTTT
Found at i:13471706 original size:19 final size:19
Alignment explanation
Indices: 13471682--13471725 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
13471672 GTGAAAATCT
*
13471682 AATGCATATG-ATGCAATG
1 AATGCAGATGCATGCAATG
*
13471700 CAATGCAGATGCATGGAATG
1 -AATGCAGATGCATGCAATG
13471720 AATGCA
1 AATGCA
13471726 AAAAGAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.23
Consensus pattern (19 bp):
AATGCAGATGCATGCAATG
Found at i:13474399 original size:23 final size:22
Alignment explanation
Indices: 13474356--13474413 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
13474346 AAAGGGTATC
* *
13474356 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
13474377 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
13474400 TGCATATCATATCT
1 TACAAATCATATCT
13474414 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:13478067 original size:15 final size:15
Alignment explanation
Indices: 13478044--13478077 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
13478034 ATTGACAATA
*
13478044 TTCTTAGCAGATTCT
1 TTCTGAGCAGATTCT
*
13478059 TTCTGAGCAGCTTCT
1 TTCTGAGCAGATTCT
13478074 TTCT
1 TTCT
13478078 CAGTATTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.24, G:0.15, T:0.47
Consensus pattern (15 bp):
TTCTGAGCAGATTCT
Found at i:13483955 original size:21 final size:21
Alignment explanation
Indices: 13483929--13483978 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
13483919 CTGAGTGTGC
13483929 TGATTGTAGTTCTACTATTGT
1 TGATTGTAGTTCTACTATTGT
* *
13483950 TGATTGTAGTTGTACTGTTGT
1 TGATTGTAGTTCTACTATTGT
*
13483971 TCATTGTA
1 TGATTGTA
13483979 ATTCCCTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.18, C:0.08, G:0.22, T:0.52
Consensus pattern (21 bp):
TGATTGTAGTTCTACTATTGT
Found at i:13494572 original size:26 final size:26
Alignment explanation
Indices: 13494543--13494602 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
13494533 TACCTACAGT
13494543 AGTTTCAGAATATCATAACATATATC
1 AGTTTCAGAATATCATAACATATATC
* * * *
13494569 AGTTTTAGATTATCATAGCATGTATC
1 AGTTTCAGAATATCATAACATATATC
13494595 AGTTTCAG
1 AGTTTCAG
13494603 CACACTTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (26 bp):
AGTTTCAGAATATCATAACATATATC
Done.