Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 49 of 198
Found at i:14721783 original size:50 final size:50
Alignment explanation
Indices: 14721708--14721847 Score: 154
Period size: 50 Copynumber: 2.8 Consensus size: 50
14721698 CATTGATATT
* * * * *
14721708 ATGAGAGGTCCTATGTAAGACCATGTTTGGGACATGGCGTTGGCTCCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTTTGGGACATGGCATGGGCACCGAG
* *
14721758 ATGAGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTTTGGGACATGGCATGGGCACCGAG
** * * * * *
14721808 ATGAGAACTCCCATGAAAGACCATCTCTGGGATATGGCAT
1 ATGAGAGGTCCCACGTAAGACCATGTTTGGGACATGGCAT
14721848 TGGTAGTACA
Statistics
Matches: 75, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 75 1.00
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTTTGGGACATGGCATGGGCACCGAG
Found at i:14722118 original size:12 final size:12
Alignment explanation
Indices: 14722101--14722139 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14722091 ATGAGTTATT
14722101 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
14722113 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
14722125 TAAGTGAGTAAG
1 TAAGTAAGCAAG
14722137 TAA
1 TAA
14722140 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:14724941 original size:116 final size:116
Alignment explanation
Indices: 14724737--14724968 Score: 464
Period size: 116 Copynumber: 2.0 Consensus size: 116
14724727 TTTCATTTAT
14724737 TACGGTTAGGTTAAATTGCATTTGGTTAATTAATTTAATTATAATACCTATCACTCCAGTTATTG
1 TACGGTTAGGTTAAATTGCATTTGGTTAATTAATTTAATTATAATACCTATCACTCCAGTTATTG
14724802 TGTTTTATTTACCAACTTGTAAATTAATAATTTTGCAATTATTGATTAAGA
66 TGTTTTATTTACCAACTTGTAAATTAATAATTTTGCAATTATTGATTAAGA
14724853 TACGGTTAGGTTAAATTGCATTTGGTTAATTAATTTAATTATAATACCTATCACTCCAGTTATTG
1 TACGGTTAGGTTAAATTGCATTTGGTTAATTAATTTAATTATAATACCTATCACTCCAGTTATTG
14724918 TGTTTTATTTACCAACTTGTAAATTAATAATTTTGCAATTATTGATTAAGA
66 TGTTTTATTTACCAACTTGTAAATTAATAATTTTGCAATTATTGATTAAGA
14724969 GATACAGTCC
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
116 116 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (116 bp):
TACGGTTAGGTTAAATTGCATTTGGTTAATTAATTTAATTATAATACCTATCACTCCAGTTATTG
TGTTTTATTTACCAACTTGTAAATTAATAATTTTGCAATTATTGATTAAGA
Found at i:14735300 original size:15 final size:15
Alignment explanation
Indices: 14735270--14735298 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14735260 ACTATTAGTA
14735270 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
14735285 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
14735299 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:14737737 original size:16 final size:17
Alignment explanation
Indices: 14737716--14737763 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
14737706 ATAAATATCA
14737716 ATAATTTTAT-TTAAAT
1 ATAATTTTATATTAAAT
* *
14737732 ATAATTTAATATTAATT
1 ATAATTTTATATTAAAT
14737749 ATAATTATTATATTA
1 ATAATT-TTATATTA
14737764 TTTTAAGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 9 0.33
17 11 0.41
18 7 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATAATTTTATATTAAAT
Found at i:14739506 original size:16 final size:16
Alignment explanation
Indices: 14739482--14739519 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
14739472 TTTGGTTTGC
* *
14739482 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
14739498 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
14739514 TGTAAT
1 TGTAAT
14739520 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:14739603 original size:39 final size:43
Alignment explanation
Indices: 14739498--14739607 Score: 111
Period size: 45 Copynumber: 2.6 Consensus size: 43
14739488 GGATTAGAGG
14739498 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* ** * ***
14739543 TGTAATGGAATATAGACGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
14739583 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
14739608 TAATGGAGAA
Statistics
Matches: 53, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
39 18 0.34
40 2 0.04
43 1 0.02
44 11 0.21
45 21 0.40
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:14739761 original size:25 final size:25
Alignment explanation
Indices: 14739729--14739783 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
14739719 TAATTTAATC
*
14739729 ATAT-TTAAACATAATTATTATT-AA
1 ATATATTAAACAT-ATTATAATTAAA
*
14739753 ATATATTAAATATATTATAATTAAA
1 ATATATTAAACATATTATAATTAAA
14739778 ATATAT
1 ATATAT
14739784 AATTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATATATTAAACATATTATAATTAAA
Found at i:14740017 original size:47 final size:45
Alignment explanation
Indices: 14739966--14740108 Score: 107
Period size: 47 Copynumber: 3.1 Consensus size: 45
14739956 TGTATAATTC
14739966 AAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCAT
1 AAAATAATTA-TATTA-ATATAATTTAATAATAATATATAATTTCAT
* * ** * *
14740013 AAAATTATTGATAATAAT-T--TTTCTTATATGAATTTATACAATT--T
1 AAAATAATT-ATATTAATATAATTTAATA-AT-AATATATA-ATTTCAT
**
14740057 AAAATAATTAATATTAAATATAATTTAATAATGGTATATAATTTCAT
1 AAAATAATT-ATATT-AATATAATTTAATAATAATATATAATTTCAT
14740104 AAAAT
1 AAAAT
14740109 TCTTAATAAT
Statistics
Matches: 71, Mismatches: 15, Indels: 20
0.67 0.14 0.19
Matches are distributed among these distances:
43 5 0.07
44 15 0.21
45 14 0.20
46 11 0.15
47 20 0.28
48 6 0.08
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (45 bp):
AAAATAATTATATTAATATAATTTAATAATAATATATAATTTCAT
Found at i:14740021 original size:44 final size:43
Alignment explanation
Indices: 14739958--14740119 Score: 109
Period size: 44 Copynumber: 3.7 Consensus size: 43
14739948 TATGAATTTG
14739958 TATAA-TTCAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTCAAAATAATTATTATTA-ATATAATTTAATAAT-ATA
* ** *
14740002 TATAATTTCATAA-AATTATTGA-TAATAATTTTTCTTATATGAATTTA
1 TATAATTTCAAAATAATTATT-ATTAAT-A-TAAT-TTA-AT-AATATA
* * *
14740049 TACAATTT-AAAATAATTAATATTAAATATAATTTAATAATGGTA
1 TATAATTTCAAAATAATTATTATT-AATATAATTTAATAAT-ATA
* * *
14740093 TATAATTTCATAA-AATTCTTAATAATA
1 TATAATTTCAAAATAATTATTATTAATA
14740120 AAATGTTCTT
Statistics
Matches: 91, Mismatches: 15, Indels: 25
0.69 0.11 0.19
Matches are distributed among these distances:
43 9 0.10
44 33 0.36
45 15 0.16
46 9 0.10
47 19 0.21
48 6 0.07
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.45
Consensus pattern (43 bp):
TATAATTTCAAAATAATTATTATTAATATAATTTAATAATATA
Found at i:14740028 original size:91 final size:90
Alignment explanation
Indices: 14739924--14740154 Score: 295
Period size: 91 Copynumber: 2.5 Consensus size: 90
14739914 AATTTAAAAT
* * * *
14739924 AATTA-TAACTAATAAATTATCTTATATGAATTTGTATAATTCAAAATAATTATTATTACATATA
1 AATTATTAA-TAATAAATT-TCTTATATGAATTTATACAATTCAAAATAATTAATATTAAATATA
14739988 ATTTAATAATAATATATAATTTCATAA
64 ATTTAATAATAATATATAATTTCATAA
* * *
14740015 AATTATTGATAATAATTTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
1 AATTATTAATAATAA-ATTTCTTATATGAATTTATACAATTCAAAATAATTAATATTAAATATAA
**
14740080 TTTAATAATGGTATATAATTTCATAA
65 TTTAATAATAATATATAATTTCATAA
* *
14740106 AATTCTTAATAATAAAATGTTCTTATATGAATTTACTA-AAATCAAAATA
1 AATTATTAATAAT-AAAT-TTCTTATATGAATTTA-TACAATTCAAAATA
14740155 TAACTTGAGA
Statistics
Matches: 121, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
91 88 0.73
92 31 0.26
93 2 0.02
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (90 bp):
AATTATTAATAATAAATTTCTTATATGAATTTATACAATTCAAAATAATTAATATTAAATATAAT
TTAATAATAATATATAATTTCATAA
Found at i:14743346 original size:33 final size:33
Alignment explanation
Indices: 14743307--14743378 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
14743297 ATTATAAAGC
*
14743307 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
14743340 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
14743373 ATGTAT
1 ATGTAT
14743379 GATTCAAGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTAT
Found at i:14743483 original size:33 final size:33
Alignment explanation
Indices: 14743445--14743517 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
14743435 TCATTAAAGC
*
14743445 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
14743478 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
14743511 ATGTATA
1 ATGTATA
14743518 CTTCAAGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.42
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTAT
Found at i:14743549 original size:138 final size:138
Alignment explanation
Indices: 14743301--14743586 Score: 556
Period size: 138 Copynumber: 2.1 Consensus size: 138
14743291 AAAGAAATTA
14743301 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTG
1 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTG
14743366 TTGGTATATGTATGATTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGAT
66 TTGGTATATGTATGATTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGAT
14743431 TAGTTCAT
131 TAGTTCAT
14743439 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTG
1 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTG
14743504 TTGGTATATGTAT-ACTTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGA
66 TTGGTATATGTATGA-TTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGA
14743568 TTAGTTCAT
130 TTAGTTCAT
14743577 TAAAGCATGT
1 TAAAGCATGT
14743587 TCAAAGTTTT
Statistics
Matches: 147, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
137 1 0.01
138 146 0.99
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.43
Consensus pattern (138 bp):
TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTG
TTGGTATATGTATGATTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGAT
TAGTTCAT
Found at i:14743618 original size:37 final size:37
Alignment explanation
Indices: 14743563--14743683 Score: 215
Period size: 37 Copynumber: 3.3 Consensus size: 37
14743553 GTATAAATAT
* * *
14743563 ATTGATTAGTTCATTAAAGCATGTTCAAAGTTTTAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
14743600 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
14743637 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
14743674 ATTGATTAGT
1 ATTGATTAGT
14743684 NNNNNNNNNN
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 81 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (37 bp):
ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
Found at i:14744569 original size:13 final size:13
Alignment explanation
Indices: 14744551--14744575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14744541 TTTGAAAGCC
14744551 AATTTGAATGCTT
1 AATTTGAATGCTT
14744564 AATTTGAATGCT
1 AATTTGAATGCT
14744576 CTTTGATGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
AATTTGAATGCTT
Found at i:14744980 original size:69 final size:69
Alignment explanation
Indices: 14744870--14745009 Score: 201
Period size: 69 Copynumber: 2.0 Consensus size: 69
14744860 AATCAAGTTC
*
14744870 CAGTTTCATATTCTACTGACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCC
1 CAGTTTCATATTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCC
14744935 AGAA
66 AGAA
* * * * * *
14744939 CAGTTTCATCTTCTACTCACTAACAAA-CTAATAACATTTTCCAGCAGACTATCAAAACAATTTC
1 CAGTTTCATATTCTACTCACTAACAAATC-AAGAACAATTTCCAGCAGACAATCAAAACAACTGC
14745003 CAGAA
65 CAGAA
14745008 CA
1 CA
14745010 AACCAACAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
68 1 0.02
69 62 0.98
ACGTcount: A:0.41, C:0.26, G:0.08, T:0.25
Consensus pattern (69 bp):
CAGTTTCATATTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCC
AGAA
Found at i:14746123 original size:41 final size:39
Alignment explanation
Indices: 14746029--14746140 Score: 136
Period size: 41 Copynumber: 2.8 Consensus size: 39
14746019 GGCAGAAACT
* *
14746029 GAGCAAATCGGCCGAAAAAGAAAAGAAAAG-AAATGGGGG
1 GAGCAAATCGGCAG-AAAAGAAAAGAAAAGAAAATGCGGG
* * *
14746068 GAGCAAATTGGCAGAAAAGAAAAGAAAAGAAAATAATCTGG
1 GAGCAAATCGGCAGAAAAGAAAAGAAAAGAAAAT--GCGGG
*
14746109 GAGCAAATCGGCAGAAAAGAAAAGCAAAGAAA
1 GAGCAAATCGGCAGAAAAGAAAAGAAAAGAAA
14746141 CATGGAAGCA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
38 15 0.24
39 16 0.25
41 32 0.51
ACGTcount: A:0.55, C:0.10, G:0.28, T:0.07
Consensus pattern (39 bp):
GAGCAAATCGGCAGAAAAGAAAAGAAAAGAAAATGCGGG
Found at i:14746132 original size:36 final size:37
Alignment explanation
Indices: 14746030--14746156 Score: 119
Period size: 41 Copynumber: 3.3 Consensus size: 37
14746020 GCAGAAACTG
* *** *
14746030 AGCAAATCGGCCGAAAAAGAAAAGAAAAGAAATGGGGGG
1 AGCAAATCGGCAG-AAAAGAAAAGAAAAGAAA-CATGGA
* * *
14746069 AGCAAATTGGCAGAAAAGAAAAGAAAAGAAAATAATCTGGG
1 AGCAAATCGGCAGAAAAGAAAAGAAAAG-AAA-CA--TGGA
*
14746110 AGCAAATCGGCAGAAAAGAAAAGCAAAGAAACATGGA
1 AGCAAATCGGCAGAAAAGAAAAGAAAAGAAACATGGA
14746147 AGCAAATCGG
1 AGCAAATCGG
14746157 ATGAAGGTAG
Statistics
Matches: 76, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
37 13 0.17
38 15 0.20
39 16 0.21
40 3 0.04
41 29 0.38
ACGTcount: A:0.54, C:0.11, G:0.28, T:0.08
Consensus pattern (37 bp):
AGCAAATCGGCAGAAAAGAAAAGAAAAGAAACATGGA
Found at i:14748778 original size:2 final size:2
Alignment explanation
Indices: 14748771--14748823 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
14748761 GTGAAATTTG
14748771 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14748813 AT AT AT AT AT A
1 AT AT AT AT AT A
14748824 NNNNNNNNNN
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14751787 original size:9 final size:8
Alignment explanation
Indices: 14751766--14751809 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
14751756 TGGGAATTTG
14751766 AAAATAAA
1 AAAATAAA
14751774 AAAATAACA
1 AAAATAA-A
14751783 AAAATAAA
1 AAAATAAA
*
14751791 AATAA-AAT
1 AA-AATAAA
14751799 AAAATAAA
1 AAAATAAA
14751807 AAA
1 AAA
14751810 GAAAATTTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
7 2 0.06
8 19 0.61
9 10 0.32
ACGTcount: A:0.84, C:0.02, G:0.00, T:0.14
Consensus pattern (8 bp):
AAAATAAA
Found at i:14751788 original size:17 final size:15
Alignment explanation
Indices: 14751766--14751814 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 15
14751756 TGGGAATTTG
14751766 AAAATAAAAAAATAACA
1 AAAATAAAAAAA-AA-A
*
14751783 AAAATAAAAATAAAAT
1 AAAATAAAAA-AAAAA
14751799 AAAATAAAAAAGAAAA
1 AAAATAAAAAA-AAAA
14751815 TTTAGCCCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 1 0.04
16 13 0.46
17 12 0.43
18 2 0.07
ACGTcount: A:0.84, C:0.02, G:0.02, T:0.12
Consensus pattern (15 bp):
AAAATAAAAAAAAAA
Found at i:14751815 original size:17 final size:16
Alignment explanation
Indices: 14751766--14751815 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
14751756 TGGGAATTTG
14751766 AAAATAAAAAAATAACA-
1 AAAATAAAAAAA-AA-AT
*
14751783 AAAATAAAAATAAAAT
1 AAAATAAAAAAAAAAT
14751799 AAAATAAAAAAGAAAAT
1 AAAATAAAAAA-AAAAT
14751816 TTAGCCCCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 1 0.03
16 12 0.41
17 16 0.55
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.14
Consensus pattern (16 bp):
AAAATAAAAAAAAAAT
Found at i:14756978 original size:25 final size:25
Alignment explanation
Indices: 14756950--14756998 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
14756940 TACAGTCTAT
*
14756950 CTATAGTAGTATC-AGTATATACTAC
1 CTATAGCAGTATCGAG-ATATACTAC
*
14756975 CTATAGCAGTTTCGAGATATACTA
1 CTATAGCAGTATCGAGATATACTA
14756999 TCAAAAACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (25 bp):
CTATAGCAGTATCGAGATATACTAC
Found at i:14759045 original size:20 final size:20
Alignment explanation
Indices: 14759020--14759067 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
14759010 AATTGAAATG
14759020 AATGTGATATTGAGTTATGA
1 AATGTGATATTGAGTTATGA
*
14759040 AATGTGATATTGGGTTATGA
1 AATGTGATATTGAGTTATGA
14759060 AATGTGAT
1 AATGTGAT
14759068 TTTATTCGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (20 bp):
AATGTGATATTGAGTTATGA
Found at i:14760386 original size:17 final size:18
Alignment explanation
Indices: 14760364--14760407 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
14760354 TAGTAGTTAT
*
14760364 AATCCATAA-CTAATAAA
1 AATCCATAATCTAAGAAA
* *
14760381 AATCCAAAATTTAAGAAA
1 AATCCATAATCTAAGAAA
14760399 AATCCATAA
1 AATCCATAA
14760408 AGGTCATATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.59, C:0.16, G:0.02, T:0.23
Consensus pattern (18 bp):
AATCCATAATCTAAGAAA
Found at i:14762193 original size:17 final size:17
Alignment explanation
Indices: 14762174--14762206 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14762164 AAAAATAACA
14762174 AAAAT-AAAAAGAAAAT
1 AAAATAAAAAAGAAAAT
14762190 AAAATAAAAAAGAAAAT
1 AAAATAAAAAAGAAAAT
14762207 TCGGCCCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (17 bp):
AAAATAAAAAAGAAAAT
Found at i:14764838 original size:25 final size:25
Alignment explanation
Indices: 14764810--14764858 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
14764800 TACAGTCTAT
* *
14764810 CTATAGTAGTCTCAGTATATACTAC
1 CTATAGCAGTCTCAGGATATACTAC
*
14764835 CTATAGCAGTTTCAGGATATACTA
1 CTATAGCAGTCTCAGGATATACTA
14764859 TCAAAAACAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (25 bp):
CTATAGCAGTCTCAGGATATACTAC
Found at i:14767602 original size:13 final size:13
Alignment explanation
Indices: 14767584--14767610 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14767574 ACTTGTGAAC
14767584 TTTGATATATATA
1 TTTGATATATATA
14767597 TTTGATATATATA
1 TTTGATATATATA
14767610 T
1 T
14767611 GATACTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (13 bp):
TTTGATATATATA
Found at i:14768040 original size:20 final size:20
Alignment explanation
Indices: 14768015--14768062 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
14768005 AATTGAAATG
14768015 AATGTGATATTGAGTTATGA
1 AATGTGATATTGAGTTATGA
*
14768035 AATGTGATATTGGGTTATGA
1 AATGTGATATTGAGTTATGA
14768055 AATGTGAT
1 AATGTGAT
14768063 TTTATTTGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (20 bp):
AATGTGATATTGAGTTATGA
Found at i:14773656 original size:20 final size:20
Alignment explanation
Indices: 14773627--14773678 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
14773617 AGATAATTGA
14773627 AATG-AATGTGATATTGAGT
1 AATGAAATGTGATATTGAGT
*
14773646 AATGAAATGTGATATTGGGT
1 AATGAAATGTGATATTGAGT
*
14773666 TATGAAATGTGAT
1 AATGAAATGTGAT
14773679 TGTATTCGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 4 0.13
20 26 0.87
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (20 bp):
AATGAAATGTGATATTGAGT
Found at i:14784544 original size:25 final size:25
Alignment explanation
Indices: 14784501--14784713 Score: 198
Period size: 25 Copynumber: 8.6 Consensus size: 25
14784491 ACACAAATTA
* * *
14784501 TCTGTAAAGCCTTTATGGTGAACTC
1 TCTGAAAAGCCTTTGTGGTGAACCC
* * *
14784526 TTTGAAAAGCTTTTGTGGTGAACTC
1 TCTGAAAAGCCTTTGTGGTGAACCC
* **
14784551 TCT-ACAAAGCTTTTGTGGCAAACCC
1 TCTGA-AAAGCCTTTGTGGTGAACCC
**
14784576 TCTGAAAAGCCTTTGT-GCAAACCC
1 TCTGAAAAGCCTTTGTGGTGAACCC
* *
14784600 TCTAAAAAGCCTTTATGGTGAACCC
1 TCTGAAAAGCCTTTGTGGTGAACCC
**
14784625 TCTGAAAAGCCTTTGTGGCAAACCC
1 TCTGAAAAGCCTTTGTGGTGAACCC
* *
14784650 TCTGTAAAGCCTTTGTGGTGAACTC
1 TCTGAAAAGCCTTTGTGGTGAACCC
* * * *
14784675 TCTGTAAAGCCTTTATAGCT-AACTC
1 TCTGAAAAGCCTTTGT-GGTGAACCC
14784700 TCTGAAAAGCCTTT
1 TCTGAAAAGCCTTT
14784714 TTGGCATGTT
Statistics
Matches: 160, Mismatches: 24, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
24 23 0.14
25 134 0.84
26 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (25 bp):
TCTGAAAAGCCTTTGTGGTGAACCC
Found at i:14784591 original size:50 final size:50
Alignment explanation
Indices: 14784506--14784713 Score: 220
Period size: 50 Copynumber: 4.2 Consensus size: 50
14784496 AATTATCTGT
* * * * ** * *
14784506 AAAGCCTTTATGGTGAACTCTTTGAAAAGCTTTTGTGGTGAACTCTCTAC
1 AAAGCCTTTGTGGTGAACCCTCTGAAAAGCCTTTGTGGCAAACCCTCTAA
* **
14784556 AAAGCTTTTGTGGCAAACCCTCTGAAAAGCCTTTGT-GCAAACCCTCTAA
1 AAAGCCTTTGTGGTGAACCCTCTGAAAAGCCTTTGTGGCAAACCCTCTAA
* **
14784605 AAAGCCTTTATGGTGAACCCTCTGAAAAGCCTTTGTGGCAAACCCTCTGT
1 AAAGCCTTTGTGGTGAACCCTCTGAAAAGCCTTTGTGGCAAACCCTCTAA
* * * * * * *
14784655 AAAGCCTTTGTGGTGAACTCTCTGTAAAGCCTTTATAGCTAACTCTCTGA
1 AAAGCCTTTGTGGTGAACCCTCTGAAAAGCCTTTGTGGCAAACCCTCTAA
14784705 AAAGCCTTT
1 AAAGCCTTT
14784714 TTGGCATGTT
Statistics
Matches: 132, Mismatches: 25, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
49 41 0.31
50 91 0.69
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (50 bp):
AAAGCCTTTGTGGTGAACCCTCTGAAAAGCCTTTGTGGCAAACCCTCTAA
Found at i:14784634 original size:74 final size:75
Alignment explanation
Indices: 14784530--14784719 Score: 226
Period size: 74 Copynumber: 2.5 Consensus size: 75
14784520 GAACTCTTTG
* *
14784530 AAAAGCTTTTGTGGTGAACTCTCT-ACAAAGCTTTTGTGGCAAACCCTCTGAAAAGCCTTTGT-G
1 AAAAGCCTTTATGGTGAACTCTCTGA-AAAGCTTTTGTGGCAAACCCTCTGAAAAGCCTTTGTGG
14784593 CAAACCCTCTA
65 CAAACCCTCTA
* * * *
14784604 AAAAGCCTTTATGGTGAACCCTCTGAAAAGCCTTTGTGGCAAACCCTCTGTAAAGCCTTTGTGGT
1 AAAAGCCTTTATGGTGAACTCTCTGAAAAGCTTTTGTGGCAAACCCTCTGAAAAGCCTTTGTGGC
* * *
14784669 GAACTCTCTG
66 AAACCCTCTA
* *
14784679 TAAAGCCTTTATAGCT-AACTCTCTGAAAAGCCTTTT-TGGCA
1 AAAAGCCTTTAT-GGTGAACTCTCTGAAAAG-CTTTTGTGGCA
14784720 TGTTATCTAA
Statistics
Matches: 99, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
74 55 0.56
75 38 0.38
76 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (75 bp):
AAAAGCCTTTATGGTGAACTCTCTGAAAAGCTTTTGTGGCAAACCCTCTGAAAAGCCTTTGTGGC
AAACCCTCTA
Found at i:14784678 original size:99 final size:100
Alignment explanation
Indices: 14784506--14784713 Score: 256
Period size: 99 Copynumber: 2.1 Consensus size: 100
14784496 AATTATCTGT
* * * ** * *
14784506 AAAGCCTTTATGGTGAACTCTTTGAAAAGCTTTTGTGGTGAACTCTCTACAAAGCTTTTGTGGCA
1 AAAGCCTTTATGGTGAACCCTCTGAAAAGCCTTTGTGGCAAACCCTCTACAAAGCCTTTGTGGCA
*
14784571 AACCCTCTGAAAAGCCTTTGT-GCAAACCCTCTAA
66 AACCCTCTGAAAAGCCTTTATAGCAAACCCTCTAA
** **
14784605 AAAGCCTTTATGGTGAACCCTCTGAAAAGCCTTTGTGGCAAACCCTCTGTAAAGCCTTTGTGGTG
1 AAAGCCTTTATGGTGAACCCTCTGAAAAGCCTTTGTGGCAAACCCTCTACAAAGCCTTTGTGGCA
* * * * *
14784670 AACTCTCTGTAAAGCCTTTATAGCTAACTCTCTGA
66 AACCCTCTGAAAAGCCTTTATAGCAAACCCTCTAA
14784705 AAAGCCTTT
1 AAAGCCTTT
14784714 TTGGCATGTT
Statistics
Matches: 91, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
99 72 0.79
100 19 0.21
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (100 bp):
AAAGCCTTTATGGTGAACCCTCTGAAAAGCCTTTGTGGCAAACCCTCTACAAAGCCTTTGTGGCA
AACCCTCTGAAAAGCCTTTATAGCAAACCCTCTAA
Found at i:14785077 original size:15 final size:15
Alignment explanation
Indices: 14785052--14785086 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
14785042 GACTCTATTT
*
14785052 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
14785066 TAATTAATATTAAGA
1 TAATTAATATTAAGA
14785081 TAATTA
1 TAATTA
14785087 TTAATGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:14792397 original size:13 final size:13
Alignment explanation
Indices: 14792379--14792404 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14792369 TTAACAATAT
14792379 ATAAACATTGACC
1 ATAAACATTGACC
14792392 ATAAACATTGACC
1 ATAAACATTGACC
14792405 TTATTAACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (13 bp):
ATAAACATTGACC
Found at i:14792876 original size:30 final size:29
Alignment explanation
Indices: 14792842--14792915 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
14792832 ATAGCCGAAG
*
14792842 CCATCCCTTTTCATAGTTCGATGGTTGTCA
1 CCATCCCTTTTCATAGTT-GATGGTCGTCA
* *
14792872 CCATCCGTTTTCATTGTTGATGGTCGTCA
1 CCATCCCTTTTCATAGTTGATGGTCGTCA
14792901 CCATCCCTTTTCATA
1 CCATCCCTTTTCATA
14792916 ATCGACAGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 23 0.59
30 16 0.41
ACGTcount: A:0.16, C:0.28, G:0.15, T:0.41
Consensus pattern (29 bp):
CCATCCCTTTTCATAGTTGATGGTCGTCA
Found at i:14792903 original size:29 final size:30
Alignment explanation
Indices: 14792814--14792915 Score: 118
Period size: 30 Copynumber: 3.4 Consensus size: 30
14792804 TAACCAAGTT
* * * *
14792814 ATCCCTTTCCATAGTTCGATAGCCG-AAGCC
1 ATCCCTTTTCATAGTTCGATGGTCGTCA-CC
*
14792844 ATCCCTTTTCATAGTTCGATGGTTGTCACC
1 ATCCCTTTTCATAGTTCGATGGTCGTCACC
* *
14792874 ATCCGTTTTCATTGTT-GATGGTCGTCACC
1 ATCCCTTTTCATAGTTCGATGGTCGTCACC
14792903 ATCCCTTTTCATA
1 ATCCCTTTTCATA
14792916 ATCGACAGCC
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
29 23 0.38
30 37 0.61
31 1 0.02
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAGTTCGATGGTCGTCACC
Found at i:14792935 original size:29 final size:29
Alignment explanation
Indices: 14792903--14792972 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
14792893 GGTCGTCACC
14792903 ATCCCTTTTCATAATCGACAGCCGAAGCT
1 ATCCCTTTTCATAATCGACAGCCGAAGCT
* * * **
14792932 ATCCCTTTTCGTATTCGATAGTGGAAGCT
1 ATCCCTTTTCATAATCGACAGCCGAAGCT
14792961 ATCCCTTTTCAT
1 ATCCCTTTTCAT
14792973 TTTTCGATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGACAGCCGAAGCT
Found at i:14800404 original size:30 final size:30
Alignment explanation
Indices: 14800341--14800627 Score: 149
Period size: 30 Copynumber: 9.7 Consensus size: 30
14800331 TGGTTAACCC
* * * *
14800341 ATCCCTTTTCGTAATTCGATCA-CCAAAGTT
1 ATCCCTTTTCATAGTTCGAT-AGCCGAAGCT
* *
14800371 ATCCTTTTTCATAGTTCAATAGCCGAAGCT
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCT
* * * * * *
14800401 ATCCCTTTTCATA-TTTGGTGGTCGTCA-CC
1 ATCCCTTTTCATAGTTCGATAGCCG-AAGCT
* * * * *
14800430 ATCCTTTTTCATAATTTGACAACCGAAGCT
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCT
* *
14800460 ATCCATTTTCATAGTTCGATAGCCGAAGCC
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCT
* * * *
14800490 ATCCCTTTTCATAGTTCGATGGTCGTCA-CC
1 ATCCCTTTTCATAGTTCGATAGCCG-AAGCT
* * * * * * *
14800520 ATCCCCTTTCATTGTT-AATGGTCGAAACC
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCT
* *
14800549 ATCCCTTTTCATA-ATCGATAGTCGAAGCT
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCT
* ** *
14800578 ATCTCTTTTTGTA-TTCCATAGCCGAAGCT
1 ATCCCTTTTCATAGTTCGATAGCCGAAGCT
* *
14800607 ATCTCTTTTCGTA-TTCGATAG
1 ATCCCTTTTCATAGTTCGATAG
14800628 ATGAAGCTTT
Statistics
Matches: 199, Mismatches: 51, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
28 2 0.01
29 92 0.46
30 104 0.52
31 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAGTTCGATAGCCGAAGCT
Found at i:14800494 original size:89 final size:90
Alignment explanation
Indices: 14800339--14800531 Score: 264
Period size: 89 Copynumber: 2.2 Consensus size: 90
14800329 GATGGTTAAC
* * * *
14800339 CCATCCCTTTTCGTAATTCGATCACCAAAGTTATCCTTTTTCATAGTTCAATAGCCGAAGCTATC
1 CCATCCCTTTTCATAATTCGATCACCAAAGCTATCCATTTTCATAGTTCAATAGCCGAAGCCATC
* *
14800404 CCTTTTCATA-TTTGGTGGTCGTCA
66 CCTTTTCATAGTTCGATGGTCGTCA
* * * *
14800428 CCATCCTTTTTCATAATTTGA-CAACCGAAGCTATCCATTTTCATAGTTCGATAGCCGAAGCCAT
1 CCATCCCTTTTCATAATTCGATC-ACCAAAGCTATCCATTTTCATAGTTCAATAGCCGAAGCCAT
14800492 CCCTTTTCATAGTTCGATGGTCGTCA
65 CCCTTTTCATAGTTCGATGGTCGTCA
*
14800518 CCATCCCCTTTCAT
1 CCATCCCTTTTCAT
14800532 TGTTAATGGT
Statistics
Matches: 90, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
88 1 0.01
89 65 0.72
90 24 0.27
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (90 bp):
CCATCCCTTTTCATAATTCGATCACCAAAGCTATCCATTTTCATAGTTCAATAGCCGAAGCCATC
CCTTTTCATAGTTCGATGGTCGTCA
Found at i:14800558 original size:89 final size:88
Alignment explanation
Indices: 14800371--14800586 Score: 229
Period size: 89 Copynumber: 2.4 Consensus size: 88
14800361 CACCAAAGTT
* * * * **
14800371 ATCCTTTTTCATAGTTCAATAGCCGAAGCTATCCCTTTTCATATTTGGTGGTCGTCACCATCCTT
1 ATCCATTTTCATAGTTCGATAGCCGAAGCTATCCCTTTTCATATTCGATGGTCGTCACCATCCCC
* * *
14800436 TTTCATAATTTGACAACCGAAGCT
66 TTTCAT-ATTTAACAACCGAAACC
*
14800460 ATCCATTTTCATAGTTCGATAGCCGAAGCCATCCCTTTTCATAGTTCGATGGTCGTCACCATCCC
1 ATCCATTTTCATAGTTCGATAGCCGAAGCTATCCCTTTTCATA-TTCGATGGTCGTCACCATCCC
****
14800525 CTTTCAT-TGTTAATGGTCGAAACC
65 CTTTCATAT-TTAACAACCGAAACC
* * * *
14800549 ATCCCTTTTCATA-ATCGATAGTCGAAGCTATCTCTTTT
1 ATCCATTTTCATAGTTCGATAGCCGAAGCTATCCCTTTT
14800587 TGTATTCCAT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
88 22 0.21
89 60 0.57
90 24 0.23
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (88 bp):
ATCCATTTTCATAGTTCGATAGCCGAAGCTATCCCTTTTCATATTCGATGGTCGTCACCATCCCC
TTTCATATTTAACAACCGAAACC
Found at i:14800585 original size:29 final size:29
Alignment explanation
Indices: 14800553--14800643 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
14800543 GAAACCATCC
* *
14800553 CTTTTCATAATCGATAGTCGAAGCTATCT
1 CTTTTCGTATTCGATAGTCGAAGCTATCT
* * *
14800582 CTTTTTGTATTCCATAGCCGAAGCTATCT
1 CTTTTCGTATTCGATAGTCGAAGCTATCT
*
14800611 CTTTTCGTATTCGATAGAT-GAAGCTTTC-
1 CTTTTCGTATTCGATAG-TCGAAGCTATCT
14800639 CTTTT
1 CTTTT
14800644 TTATTTGTCG
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
28 5 0.10
29 47 0.90
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (29 bp):
CTTTTCGTATTCGATAGTCGAAGCTATCT
Found at i:14803796 original size:23 final size:25
Alignment explanation
Indices: 14803733--14803788 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
14803723 GAGTATATAA
*
14803733 ATGTATGTAATGTTTGCTATGAGAT
1 ATGTATGTAATGTTTGCTATAAGAT
14803758 ATGTATGTAATGTTTGCTATAAGAT
1 ATGTATGTAATGTTTGCTATAAGAT
*
14803783 GTGTAT
1 ATGTAT
14803789 TTTGTTTGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.29, C:0.04, G:0.23, T:0.45
Consensus pattern (25 bp):
ATGTATGTAATGTTTGCTATAAGAT
Found at i:14804180 original size:27 final size:28
Alignment explanation
Indices: 14804086--14804201 Score: 155
Period size: 28 Copynumber: 4.2 Consensus size: 28
14804076 CACAACAGTT
14804086 AAGAATAACCTTTGTGGCGAACTCTGAA
1 AAGAATAACCTTTGTGGCGAACTCTGAA
*
14804114 AAGAATAACCTTTTTGGCGAACTCTGAA
1 AAGAATAACCTTTGTGGCGAACTCTGAA
* *
14804142 AAGAATAACCTTTTTGGCGAACTTTGAA
1 AAGAATAACCTTTGTGGCGAACTCTGAA
* * *
14804170 AGGAAT-GCCTTTGTGGCAAACTCT-AA
1 AAGAATAACCTTTGTGGCGAACTCTGAA
*
14804196 ATGAAT
1 AAGAAT
14804202 TTCTTTAGTG
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 7 0.09
27 14 0.17
28 59 0.74
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.28
Consensus pattern (28 bp):
AAGAATAACCTTTGTGGCGAACTCTGAA
Found at i:14817162 original size:29 final size:29
Alignment explanation
Indices: 14817064--14817169 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 29
14817054 ATAAACACCA
*
14817064 GTACATAGTACCTGATAAAGTAATCATCG
1 GTACATAGTACCTGATAAAATAATCATCG
* * * * * * *
14817093 GCAAATTGTGCCTGATACAACACAAACACCG
1 GTACATAGTACCTGATA-AA-ATAATCATCG
* *
14817124 GTACAAAGTACCTGATAAAATAATCATTG
1 GTACATAGTACCTGATAAAATAATCATCG
*
14817153 GTACATAGTACTTGATA
1 GTACATAGTACCTGATA
14817170 CTTTAAACCC
Statistics
Matches: 56, Mismatches: 19, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
29 34 0.61
30 4 0.07
31 18 0.32
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (29 bp):
GTACATAGTACCTGATAAAATAATCATCG
Found at i:14817169 original size:60 final size:60
Alignment explanation
Indices: 14817043--14817170 Score: 157
Period size: 60 Copynumber: 2.1 Consensus size: 60
14817033 ACACCTCGTG
* * * * * *
14817043 CTTGATACAATATAAACACCAGTACATAGTACCTGATAAAGTAATCATCGGCAAATTGTG
1 CTTGATACAACACAAACACCAGTACAAAGTACCTGATAAAATAATCATCGGCAAATAGTA
* * * * *
14817103 CCTGATACAACACAAACACCGGTACAAAGTACCTGATAAAATAATCATTGGTACATAGTA
1 CTTGATACAACACAAACACCAGTACAAAGTACCTGATAAAATAATCATCGGCAAATAGTA
14817163 CTTGATAC
1 CTTGATAC
14817171 TTTAAACCCT
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (60 bp):
CTTGATACAACACAAACACCAGTACAAAGTACCTGATAAAATAATCATCGGCAAATAGTA
Found at i:14819418 original size:19 final size:19
Alignment explanation
Indices: 14819394--14819485 Score: 166
Period size: 19 Copynumber: 4.8 Consensus size: 19
14819384 AATCTTCAAG
14819394 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14819413 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14819432 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14819451 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14819470 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14819486 AGATATGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 69 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14819438 original size:38 final size:38
Alignment explanation
Indices: 14819394--14819508 Score: 185
Period size: 38 Copynumber: 2.9 Consensus size: 38
14819384 AATCTTCAAG
14819394 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
14819432 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
14819470 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT---AGATATGA-TATGTAATCTTAGA
14819509 GATTTAATTT
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
38 51 0.71
41 8 0.11
42 13 0.18
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.39
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:14819974 original size:3 final size:3
Alignment explanation
Indices: 14819966--14819994 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14819956 ATATTGTATC
14819966 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
14819995 ATTCATGCGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:14827560 original size:47 final size:47
Alignment explanation
Indices: 14827487--14827577 Score: 173
Period size: 47 Copynumber: 1.9 Consensus size: 47
14827477 TAATAGGAAA
*
14827487 CCATAACTTTAGACTTAATGAGCAAGCACATATATGAATCATACATG
1 CCATAACTTTAGACTTAATGAACAAGCACATATATGAATCATACATG
14827534 CCATAACTTTAGACTTAATGAACAAGCACATATATGAATCATAC
1 CCATAACTTTAGACTTAATGAACAAGCACATATATGAATCATAC
14827578 GTTGTTTAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.42, C:0.20, G:0.11, T:0.27
Consensus pattern (47 bp):
CCATAACTTTAGACTTAATGAACAAGCACATATATGAATCATACATG
Found at i:14829689 original size:18 final size:17
Alignment explanation
Indices: 14829668--14829709 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
14829658 AGTTATTTTT
14829668 AAAATATAAGATATTTAA
1 AAAATATAAGAT-TTTAA
**
14829686 AAAATATATTATTTTAA
1 AAAATATAAGATTTTAA
14829703 AAAATAT
1 AAAATAT
14829710 GACTCTTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
AAAATATAAGATTTTAA
Found at i:14838155 original size:11 final size:11
Alignment explanation
Indices: 14838139--14838164 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14838129 AAAATGATCA
14838139 TTTATTTATAT
1 TTTATTTATAT
14838150 TTTATTTATAT
1 TTTATTTATAT
14838161 TTTA
1 TTTA
14838165 AATAGTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTATTTATAT
Found at i:14838332 original size:16 final size:15
Alignment explanation
Indices: 14838307--14838340 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
14838297 GAACTTGAGC
*
14838307 TTTTCGAGCTCAAGT
1 TTTTCGAGCTCAAAT
14838322 TTTTACGAGCTCAAAT
1 TTTT-CGAGCTCAAAT
14838338 TTT
1 TTT
14838341 CTTGGACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.44
Consensus pattern (15 bp):
TTTTCGAGCTCAAAT
Found at i:14839053 original size:18 final size:18
Alignment explanation
Indices: 14839027--14839061 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14839017 AGTTTTCAGG
* *
14839027 GTTCGCATATCAACATAC
1 GTTCACATAACAACATAC
14839045 GTTCACATAACAACATA
1 GTTCACATAACAACATA
14839062 TAAGTGTTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.26
Consensus pattern (18 bp):
GTTCACATAACAACATAC
Found at i:14840987 original size:33 final size:33
Alignment explanation
Indices: 14840950--14841014 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
14840940 ACACACATGA
*
14840950 CGAGGTCATCGGACAAAATAGTTAGATGAATTG
1 CGAGGTCATCGGACAAAACAGTTAGATGAATTG
* *
14840983 CGAGGTCATTGGACAAAGCAGTTAGATGAATT
1 CGAGGTCATCGGACAAAACAGTTAGATGAATT
14841015 ACTTTTATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (33 bp):
CGAGGTCATCGGACAAAACAGTTAGATGAATTG
Found at i:14841912 original size:62 final size:59
Alignment explanation
Indices: 14841844--14841959 Score: 151
Period size: 62 Copynumber: 1.9 Consensus size: 59
14841834 ATGATTATCT
* * * *
14841844 TAATATTAAATTTAATTTAATGTTTATCTTCTAGATAAATATTCTATAAATTTAATAAGATC
1 TAATATTAAATTAAATCTAATATTTATC-T-T-GATAAATATTATATAAATTTAATAAGATC
* *
14841906 TAATATTAAATTAAATCTAATATTTATCTTGATAAGTATTATATTAATTTAATA
1 TAATATTAAATTAAATCTAATATTTATCTTGATAAATATTATATAAATTTAATA
14841960 TTAAAGTGGT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 21 0.44
60 1 0.02
61 1 0.02
62 25 0.52
ACGTcount: A:0.43, C:0.05, G:0.04, T:0.47
Consensus pattern (59 bp):
TAATATTAAATTAAATCTAATATTTATCTTGATAAATATTATATAAATTTAATAAGATC
Found at i:14846748 original size:19 final size:20
Alignment explanation
Indices: 14846706--14846744 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14846696 GCTTCATGTG
14846706 TAAAAATAAAAAAATCTATT
1 TAAAAATAAAAAAATCTATT
*
14846726 TAAAAA-AAAAGAAT-TATT
1 TAAAAATAAAAAAATCTATT
14846744 T
1 T
14846745 TAAATTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (20 bp):
TAAAAATAAAAAAATCTATT
Found at i:14846896 original size:20 final size:22
Alignment explanation
Indices: 14846873--14846919 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
14846863 CAAATTTTAT
*
14846873 AAATTTGTAA-ACCATTAT-TA
1 AAATTTATAAGACCATTATATA
*
14846893 AAATTTATAAGACTATTATATA
1 AAATTTATAAGACCATTATATA
14846915 AAATT
1 AAATT
14846920 CAAAAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 9 0.39
21 7 0.30
22 7 0.30
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.40
Consensus pattern (22 bp):
AAATTTATAAGACCATTATATA
Found at i:14853180 original size:12 final size:12
Alignment explanation
Indices: 14853151--14853181 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14853141 ACACGGGTAC
*
14853151 GGACACGGGCTG
1 GGACATGGGCTG
14853163 GGACATGGGCTG
1 GGACATGGGCTG
14853175 GGACATG
1 GGACATG
14853182 ACTGCTTGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.19, C:0.19, G:0.48, T:0.13
Consensus pattern (12 bp):
GGACATGGGCTG
Found at i:14855782 original size:16 final size:15
Alignment explanation
Indices: 14855763--14855792 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14855753 TTCATCTTAT
14855763 TTGCATTTAGGTTAAA
1 TTGCATTTA-GTTAAA
14855779 TTGCATTTAGTTAA
1 TTGCATTTAGTTAA
14855793 TTAATTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.47
Consensus pattern (15 bp):
TTGCATTTAGTTAAA
Found at i:14857570 original size:23 final size:24
Alignment explanation
Indices: 14857526--14857577 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
14857516 TTTTTAGATT
* *
14857526 AAATT-TTAAATTAATATTAATTA
1 AAATTATTAAATTAAAATGAATTA
14857549 AAATTATTAAA-TAAAATGAATTA
1 AAATTATTAAATTAAAATGAATTA
14857572 AAATTA
1 AAATTA
14857578 AAAAAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (24 bp):
AAATTATTAAATTAAAATGAATTA
Found at i:14858925 original size:26 final size:22
Alignment explanation
Indices: 14858841--14858912 Score: 117
Period size: 22 Copynumber: 3.3 Consensus size: 22
14858831 ATTGTTCAAA
* **
14858841 CATGAGAGCTTAGTACGTGAAA
1 CATGAGAGCTTAGTACGTTAGC
14858863 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
14858885 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
14858907 CATGAG
1 CATGAG
14858913 TGAGTTATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (22 bp):
CATGAGAGCTTAGTACGTTAGC
Found at i:14860325 original size:43 final size:43
Alignment explanation
Indices: 14860277--14860482 Score: 277
Period size: 43 Copynumber: 4.8 Consensus size: 43
14860267 AACCGCTAAC
14860277 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAACAAG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAACAAG
* *
14860320 ACCTTTAGCGGCGCTTTTCACGCAAACGCCGCTATAGAACAAG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAACAAG
* * * *
14860363 ACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGATCATG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAACAAG
* * * * ** *
14860406 ACTTTTAACGGCACTTTTACCACAAACGCCGCTATAGGTCATG
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAACAAG
* *
14860449 ACTTTTAACGGCGCTTTTCCCACAAACGCCGCTA
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTA
14860483 AAAACATATC
Statistics
Matches: 146, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 146 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (43 bp):
ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAACAAG
Found at i:14860636 original size:35 final size:35
Alignment explanation
Indices: 14860600--14860667 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
14860590 CTACTAAAAT
*
14860600 TTTAACTTTA-AAACTAAATATAA-AAATTAATAAA
1 TTTAAATTTAGAAACTAAA-ATAATAAATTAATAAA
**
14860634 TTTAAATTTAGAATTTAAAATAATAAATTAATAA
1 TTTAAATTTAGAAACTAAAATAATAAATTAATAA
14860668 CACAATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
34 13 0.45
35 16 0.55
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (35 bp):
TTTAAATTTAGAAACTAAAATAATAAATTAATAAA
Found at i:14860816 original size:43 final size:43
Alignment explanation
Indices: 14860752--14860836 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
14860742 ATATGCAAGA
* * *
14860752 TAATAAAACATACAATGCATTTTCTTAATCAAGTAAATCTTGG
1 TAATAAAACATACAATACATTTACTTAATCAAGGAAATCTTGG
* *
14860795 TAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTTG
1 TAATAAAACATACAATACATTTACTTAATCAAGGAAATCTTG
14860837 TACATCATTG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (43 bp):
TAATAAAACATACAATACATTTACTTAATCAAGGAAATCTTGG
Found at i:14864817 original size:7 final size:7
Alignment explanation
Indices: 14864783--14864837 Score: 56
Period size: 7 Copynumber: 7.7 Consensus size: 7
14864773 ATCCTTAAAT
14864783 CCTAACC
1 CCTAACC
*
14864790 CCTAAATC
1 CCT-AACC
*
14864798 CCTAACT
1 CCTAACC
*
14864805 CTTAACC
1 CCTAACC
14864812 CCTAACC
1 CCTAACC
*
14864819 CCTAACT
1 CCTAACC
*
14864826 ACTAACC
1 CCTAACC
14864833 CCTAA
1 CCTAA
14864838 ACCTTAAATC
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
7 31 0.84
8 6 0.16
ACGTcount: A:0.33, C:0.45, G:0.00, T:0.22
Consensus pattern (7 bp):
CCTAACC
Found at i:14864823 original size:21 final size:21
Alignment explanation
Indices: 14864784--14864837 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 21
14864774 TCCTTAAATC
*
14864784 CTAACCCCTAAATCCCTAACT-
1 CTAACCCCT-AACCCCTAACTA
14864805 CTTAACCCCTAACCCCTAACTA
1 C-TAACCCCTAACCCCTAACTA
14864827 CTAACCCCTAA
1 CTAACCCCTAA
14864838 ACCTTAAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 21 0.70
22 9 0.30
ACGTcount: A:0.33, C:0.44, G:0.00, T:0.22
Consensus pattern (21 bp):
CTAACCCCTAACCCCTAACTA
Found at i:14864853 original size:21 final size:20
Alignment explanation
Indices: 14864829--14864869 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
14864819 CCTAACTACT
*
14864829 AACCCCTAAACCTTAAATCCC
1 AACCCCTAAACCAT-AATCCC
*
14864850 AACCCTTAAACCATAATCCC
1 AACCCCTAAACCATAATCCC
14864870 TAAATTCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (20 bp):
AACCCCTAAACCATAATCCC
Found at i:14865150 original size:13 final size:14
Alignment explanation
Indices: 14865126--14865240 Score: 56
Period size: 14 Copynumber: 7.8 Consensus size: 14
14865116 ACTAGTTAAT
*
14865126 CTAAACCCTAAACC
1 CTAAACCATAAACC
*
14865140 ATAAACC-TAAACC
1 CTAAACCATAAACC
*
14865153 CTAAAACCATAAGCC
1 CT-AAACCATAAACC
14865168 CTTAACATGCACAT-AACC
1 C-TAA-A--C-CATAAACC
*
14865186 TCTAAACCTTAAACC
1 -CTAAACCATAAACC
* *
14865201 CT-AGCCTTTAAACC
1 CTAAACC-ATAAACC
* *
14865215 ATAAACCATAACCC
1 CTAAACCATAAACC
14865229 CTAAACCCATAA
1 CTAAA-CCATAA
14865241 TCTATAAACC
Statistics
Matches: 78, Mismatches: 11, Indels: 23
0.70 0.10 0.21
Matches are distributed among these distances:
13 10 0.13
14 32 0.41
15 22 0.28
16 2 0.03
17 1 0.01
18 7 0.09
19 4 0.05
ACGTcount: A:0.43, C:0.35, G:0.03, T:0.19
Consensus pattern (14 bp):
CTAAACCATAAACC
Found at i:14865151 original size:20 final size:21
Alignment explanation
Indices: 14865126--14865164 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
14865116 ACTAGTTAAT
14865126 CTAAACCCT-AAACCATAAAC
1 CTAAACCCTAAAACCATAAAC
14865146 CTAAACCCTAAAACCATAA
1 CTAAACCCTAAAACCATAA
14865165 GCCCTTAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.15
Consensus pattern (21 bp):
CTAAACCCTAAAACCATAAAC
Found at i:14865255 original size:22 final size:21
Alignment explanation
Indices: 14865127--14865313 Score: 64
Period size: 21 Copynumber: 8.9 Consensus size: 21
14865117 CTAGTTAATC
*
14865127 TAAACCCTAAACCATAAACC-
1 TAAACCATAAACCATAAACCT
* *
14865147 TAAACCCTAAAACCATAAGCCCT
1 TAAACCAT-AAACCATAA-ACCT
** *
14865170 T-AA-CATGCA-CATAACCTC-
1 TAAACCATAAACCATAAAC-CT
* * ** *
14865188 TAAACCTTAAACCCTAGCCTT
1 TAAACCATAAACCATAAACCT
* *
14865209 TAAACCATAAACCATAACCCC
1 TAAACCATAAACCATAAACCT
* *
14865230 TAAACCCATAATCTATAAACCT
1 TAAA-CCATAAACCATAAACCT
***
14865252 TAAAATGGTAACACC-TAAACCT
1 T-AAACCATAA-ACCATAAACCT
* *
14865274 TAAACTC-TAAACCATATACCC
1 TAAAC-CATAAACCATAAACCT
* *
14865295 TAAACCAAAAACCCTAAAC
1 TAAACCATAAACCATAAAC
14865314 TATAGTGATA
Statistics
Matches: 122, Mismatches: 31, Indels: 27
0.68 0.17 0.15
Matches are distributed among these distances:
18 3 0.02
19 8 0.07
20 16 0.13
21 61 0.50
22 29 0.24
23 5 0.04
ACGTcount: A:0.45, C:0.32, G:0.03, T:0.20
Consensus pattern (21 bp):
TAAACCATAAACCATAAACCT
Found at i:14865285 original size:14 final size:14
Alignment explanation
Indices: 14865265--14865313 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
14865255 AATGGTAACA
*
14865265 CCTAAACCTTAAAC
1 CCTAAACCATAAAC
* *
14865279 TCTAAACCATATAC
1 CCTAAACCATAAAC
*
14865293 CCTAAACCAAAAAC
1 CCTAAACCATAAAC
14865307 CCTAAAC
1 CCTAAAC
14865314 TATAGTGATA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18
Consensus pattern (14 bp):
CCTAAACCATAAAC
Found at i:14865713 original size:114 final size:113
Alignment explanation
Indices: 14865500--14865723 Score: 299
Period size: 114 Copynumber: 2.0 Consensus size: 113
14865490 AATCCTTGAG
* * ** *
14865500 CATTAGCGGCGCTTTCCTAAAAACCCAGCTAAATCCCCGAAAGCTCAGAAAACGGTGTCGTTGGG
1 CATTAGCGGCGCTTTCCTAAAAACCCAGCTAAATCCCCAAAAGCTCACAAAACGACGTAGTTGGG
*
14865565 CTTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAT
66 CTTAGGTTTTTTGCAGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAT
* * *
14865613 CATTGGCGGCGC-TTCCTTATAAACGCCA-CTAAATCGCCAAAAGCTCACAAAACGACGTAGTTT
1 CATTAGCGGCGCTTTCC-TAAAAAC-CCAGCTAAATCCCCAAAAGCTCACAAAACGACGTAG-TT
* * *
14865676 TGGCTTAGGTTTTTTGCAGCGCTTTCTCAAAATCGCCGCTAAATCCCT
63 GGGCTTAGGTTTTTTGCAGCGCTTTCTCAAAAACGCCGCTAAAGCCCT
14865724 GAAAGCTCAC
Statistics
Matches: 96, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
112 4 0.04
113 43 0.45
114 49 0.51
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (113 bp):
CATTAGCGGCGCTTTCCTAAAAACCCAGCTAAATCCCCAAAAGCTCACAAAACGACGTAGTTGGG
CTTAGGTTTTTTGCAGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAT
Found at i:14865729 original size:73 final size:72
Alignment explanation
Indices: 14865652--14865797 Score: 213
Period size: 73 Copynumber: 2.0 Consensus size: 72
14865642 TAAATCGCCA
* *
14865652 AAAGCTCACAAAACGACGTAGTTTTGGCTTAGGTTTTTTGCAGCGCTTTCTC-AAAATCGCCGCT
1 AAAGCTCACAAAACGACATACTTTTGGCTTAGGTTTTTTGCAGCGCTTTCTCTAAAA-CGCCGCT
14865716 AAATCCCTG
65 AAA-CCCTG
* * * *
14865725 AAAGCTCACAAAATGGCATACTTTTGGCTTAGGTTTTTTGCGGTGCTTTCTCTAAAACGCCGCTA
1 AAAGCTCACAAAACGACATACTTTTGGCTTAGGTTTTTTGCAGCGCTTTCTCTAAAACGCCGCTA
14865790 AACCCTG
66 AACCCTG
14865797 A
1 A
14865798 GCATTAGCGG
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
72 6 0.09
73 56 0.85
74 4 0.06
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (72 bp):
AAAGCTCACAAAACGACATACTTTTGGCTTAGGTTTTTTGCAGCGCTTTCTCTAAAACGCCGCTA
AACCCTG
Found at i:14865825 original size:186 final size:187
Alignment explanation
Indices: 14865505--14866346 Score: 1111
Period size: 186 Copynumber: 4.5 Consensus size: 187
14865495 TTGAGCATTA
* * * *
14865505 GCGGCGCTTTC-CTAAAAAC-CCAGCTAAATCCCCGAAAGCTCAGAAAACGGTGTCGTTGGGCTT
1 GCGGCGCTTTCTC-AAAAACGCC-GCTAAATCCCCGAAAGCTCACAAAACGGCGTCTTTTGGCTT
* * *
14865568 AGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAATCATTGGCGGCGCTTCCTTAT
64 AGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGCTTCCTTAA
* * * *
14865633 AAACGCCACTAAATCGCC-AAAAGCTCACAAAACGACGTAGTTTTGGCTTAGGTTTTTT
129 AAACGCCGCTAAATCCCCGAAAAGCTCACAAAACGATGTCGTTTTGGCTTAGGTTTTTT
* * * * *
14865691 GCAGCGCTTTCTCAAAATCGCCGCTAAATCCCTGAAAGCTCACAAAATGGCATACTTTTGGCTTA
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGT-CTTTTGGCTTA
* * *
14865756 GGTTTTTTGCGGTGCTTTCTCTAAAACGCCGCTAAA-CCCTGAGCATTAGCGGCGCTTCCTTAAA
65 GGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGCTTCCTTAAA
*
14865820 AACGCCGCTAAATCCCTG-AAAGCTCACAAAAC-AGTGTCGTTTTGGCTTAGGTTTTTTT
130 AACGCCGCTAAATCCCCGAAAAGCTCACAAAACGA-TGTCGTTTTGGCTTAGG-TTTTTT
* * * *
14865878 ACGGCGCTTTCTCAAAAA---CTCTAAATCCCCGAAAGCTCACAAAATGGCATCTTTTTGGCTTA
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTC-TTTTGGCTTA
* *
14865940 GGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAACCTTAAGCATTAGCGGCGCTT--TTAAG
65 GGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGCTTCCTTAA-
*
14866003 AAAGCGTCGCTAAATCCCCG-AAAGCTCACAAAACGATGTCGTTTTGGCTTAGG-TTTTT
129 AAA-CGCCGCTAAATCCCCGAAAAGCTCACAAAACGATGTCGTTTTGGCTTAGGTTTTTT
* *
14866061 GCGGCGCTTTCTCAAAAAAGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCTTTTTGGGTTA
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTC-TTTTGGCTTA
* * * *
14866126 GGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCAGTGCTTTCTTAAA
65 GGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGCTTCCTTAAA
* *
14866191 AACGCCGCTAAATCCCCGAAAA-CTCACAAAACGGTGTTGTTTTGGCTTAGGTTTTTT
130 AACGCCGCTAAATCCCCGAAAAGCTCACAAAACGATGTCGTTTTGGCTTAGGTTTTTT
* * * * * * *
14866248 GCTGTGCTTTCTTAAAAACGCCGTTAAATCCCCGAAAACTCACAAAACAGCGTC-GTTGGCTTAG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCTTTTGGCTTAG
*
14866312 GTTTTTTGCGGCGCTTTCTCAAAAACACCGCTAAA
66 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
14866347 TCCCCGAAAG
Statistics
Matches: 584, Mismatches: 54, Indels: 37
0.87 0.08 0.05
Matches are distributed among these distances:
183 27 0.05
184 77 0.13
185 107 0.18
186 244 0.42
187 125 0.21
188 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (187 bp):
GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCTTTTGGCTTAG
GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGCTTCCTTAAAA
ACGCCGCTAAATCCCCGAAAAGCTCACAAAACGATGTCGTTTTGGCTTAGGTTTTTT
Found at i:14865912 original size:71 final size:70
Alignment explanation
Indices: 14865827--14865966 Score: 208
Period size: 71 Copynumber: 2.0 Consensus size: 70
14865817 AAAAACGCCG
* **
14865827 CTAAATCCCTGAAAGCTCACAAAACAGTGTCGTTTTGGCTTAGGTTTTTTTACGGCGCTTTCTCA
1 CTAAATCCCCGAAAGCTCACAAAACAGCATCGTTTTGGCTTAGG-TTTTTTACGGCGCTTTCTCA
14865892 AAAACT
65 AAAACT
** * *
14865898 CTAAATCCCCGAAAGCTCACAAAATGGCATCTTTTTGGCTTAGGTTTTTTGCGGCGCTTTCTCAA
1 CTAAATCCCCGAAAGCTCACAAAACAGCATCGTTTTGGCTTAGGTTTTTTACGGCGCTTTCTCAA
14865963 AAAC
66 AAAC
14865967 GCCGCTAAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
70 24 0.39
71 38 0.61
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (70 bp):
CTAAATCCCCGAAAGCTCACAAAACAGCATCGTTTTGGCTTAGGTTTTTTACGGCGCTTTCTCAA
AAACT
Found at i:14866086 original size:72 final size:73
Alignment explanation
Indices: 14865989--14866161 Score: 253
Period size: 72 Copynumber: 2.4 Consensus size: 73
14865979 TTAAGCATTA
* *
14865989 GCGGCGCTTT-T-AAGAAAGCGTCGCTAAATCCCCGAAAGCTCACAAAACGATGTCGTTTTGGCT
1 GCGGCGCTTTCTCAAAAAAGC--CGCTAAATCCCCGAAAGCTCACAAAACGACGTCGTTTTGGCT
14866052 TAGG-TTTTT
64 TAGGTTTTTT
* * *
14866061 GCGGCGCTTTCTCAAAAAAGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCTTTTTGGGTTA
1 GCGGCGCTTTCTCAAAAAAGCCGCTAAATCCCCGAAAGCTCACAAAACGACGTCGTTTTGGCTTA
14866126 GGTTTTTT
66 GGTTTTTT
*
14866134 GCGGCGCTTTCTCAAAAACGCCGCTAAA
1 GCGGCGCTTTCTCAAAAAAGCCGCTAAA
14866162 GCCCTGAGCA
Statistics
Matches: 92, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
72 52 0.57
73 33 0.36
74 7 0.08
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (73 bp):
GCGGCGCTTTCTCAAAAAAGCCGCTAAATCCCCGAAAGCTCACAAAACGACGTCGTTTTGGCTTA
GGTTTTTT
Found at i:14866192 original size:114 final size:114
Alignment explanation
Indices: 14866066--14866275 Score: 323
Period size: 114 Copynumber: 1.8 Consensus size: 114
14866056 TTTTTGCGGC
* *
14866066 GCTTTCTCAAAAAAGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCT-TTTTGGGTTAGGTT
1 GCTTTCTCAAAAAAGCCGCTAAATCCCCGAAAACTCACAAAACGGCGT-TGTTTTGGCTTAGGTT
14866130 TTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCAGT
65 TTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCAGT
* * *
14866180 GCTTTCTTAAAAACGCCGCTAAATCCCCGAAAACTCACAAAACGGTGTTGTTTTGGCTTAGGTTT
1 GCTTTCTCAAAAAAGCCGCTAAATCCCCGAAAACTCACAAAACGGCGTTGTTTTGGCTTAGGTTT
* * * *
14866245 TTTGCTGTGCTTTCTTAAAAACGCCGTTAAA
66 TTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
14866276 TCCCCGAAAA
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
113 1 0.01
114 85 0.99
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (114 bp):
GCTTTCTCAAAAAAGCCGCTAAATCCCCGAAAACTCACAAAACGGCGTTGTTTTGGCTTAGGTTT
TTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCAGT
Found at i:14866219 original size:371 final size:368
Alignment explanation
Indices: 14865506--14866346 Score: 1143
Period size: 371 Copynumber: 2.3 Consensus size: 368
14865496 TGAGCATTAG
* * * *
14865506 CGGCGCTTTC-CTAAAAACCCAGCTAAATCCCCGAAAGCTCAGAAAACGGTGTCGTTGGGCTTAG
1 CGGCGCTTTCTC-AAAAACGC--CTAAATCCCCGAAAGCTCACAAAACGGCGTC-TTTGGCTTAG
* * * *
14865570 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAATCATTGGCGGCGCTTCCTTATAA
62 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAACCCTAAGCATTAGCGGCGCTT-CTTAGAA
*
14865635 ACGCCACTAAATCGCCAAAAGCTCACAAAACGACGTAGTTTTGGCTTAGGTTTTTTGCAGCGCTT
126 ACGCCACTAAATCCCCAAAAGCTCACAAAACGACGTAGTTTTGGCTTAGGTTTTTTGCAGCGCTT
** * *
14865700 TCTCAAAATCGCCGCTAAATCCCTGAAAGCTCACAAAATGGCATACTTTTGGCTTAGGTTTTTTG
191 TCTCAAAAAAGCCGCTAAATCCCCGAAAGCTCACAAAACGGCATACTTTTGGCTTAGGTTTTTTG
* * *
14865765 CGGTGCTTTCTCTAAAACGCCGCTAAACCCTGAGCATTAGCGGCGCTTCCTTAAAAACGCCGCTA
256 CGGCGCTTTCTCAAAAACGCCGCTAAACCCTGAGCATTAGCAGCGCTTCCTTAAAAACGCCGCTA
* *
14865830 AATCCCTGAAAGCTCACAAAACAGTGTCGTTTTGGCTTAGGTTTTTTTA
321 AATCCCCGAAAACTCACAAAACAGTGTCGTTTTGGCTTAGG-TTTTTTA
* * *
14865879 CGGCGCTTTCTCAAAAAC-TCTAAATCCCCGAAAGCTCACAAAATGGCATCTTTTTGGCTTAGGT
1 CGGCGCTTTCTCAAAAACGCCTAAATCCCCGAAAGCTCACAAAACGGCGTC--TTTGGCTTAGGT
*
14865943 TTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAACCTTAAGCATTAGCGGCGCTT-TTAAGAAAG
64 TTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAACCCTAAGCATTAGCGGCGCTTCTT-AGAAA-
* * * * * *
14866007 CGTCGCTAAATCCCCGAAAGCTCACAAAACGATGTCGTTTTGGCTTAGG-TTTTTGCGGCGCTTT
127 CGCCACTAAATCCCCAAAAGCTCACAAAACGACGTAGTTTTGGCTTAGGTTTTTTGCAGCGCTTT
* *
14866071 CTCAAAAAAGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGT-CTTTTTGGGTTAGGTTTTTTG
192 CTCAAAAAAGCCGCTAAATCCCCGAAAGCTCACAAAACGGCATAC-TTTTGGCTTAGGTTTTTTG
* *
14866135 CGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCAGTGCTTTCTTAAAAACGCCGCT
256 CGGCGCTTTCTCAAAAACGCCGCTAAA-CCCTGAGCATTAGCAGCGCTTCCTTAAAAACGCCGCT
* * *
14866200 AAATCCCCGAAAACTCACAAAACGGTGTTGTTTTGGCTTAGGTTTTTTG
320 AAATCCCCGAAAACTCACAAAACAGTGTCGTTTTGGCTTAGGTTTTTTA
* * * * * *
14866249 CTGTGCTTTCTTAAAAACGCCGTTAAATCCCCGAAAACTCACAAAACAGCGTCGTTGGCTTAGGT
1 CGGCGCTTTCTCAAAAACGCC--TAAATCCCCGAAAGCTCACAAAACGGCGTCTTTGGCTTAGGT
*
14866314 TTTTTGCGGCGCTTTCTCAAAAACACCGCTAAA
64 TTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
14866347 TCCCCGAAAG
Statistics
Matches: 414, Mismatches: 45, Indels: 20
0.86 0.09 0.04
Matches are distributed among these distances:
369 3 0.01
370 147 0.36
371 221 0.53
373 42 0.10
374 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (368 bp):
CGGCGCTTTCTCAAAAACGCCTAAATCCCCGAAAGCTCACAAAACGGCGTCTTTGGCTTAGGTTT
TTTGCGGCGCTTTCTCAAAAACGCCGCTAAAACCCTAAGCATTAGCGGCGCTTCTTAGAAACGCC
ACTAAATCCCCAAAAGCTCACAAAACGACGTAGTTTTGGCTTAGGTTTTTTGCAGCGCTTTCTCA
AAAAAGCCGCTAAATCCCCGAAAGCTCACAAAACGGCATACTTTTGGCTTAGGTTTTTTGCGGCG
CTTTCTCAAAAACGCCGCTAAACCCTGAGCATTAGCAGCGCTTCCTTAAAAACGCCGCTAAATCC
CCGAAAACTCACAAAACAGTGTCGTTTTGGCTTAGGTTTTTTA
Found at i:14866264 original size:73 final size:72
Alignment explanation
Indices: 14866178--14866406 Score: 318
Period size: 71 Copynumber: 3.2 Consensus size: 72
14866168 AGCATTAGCA
* *
14866178 GTGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAACTCACAAAACGGTGTTGTTTTGGCTTAGGT
1 GTGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAACTCACAAAACGGCGTCG-TTTGGCTTAGGT
*
14866243 TTTTTGCT
65 TTTTTGCG
* *
14866251 GTGCTTTCTTAAAAACGCCGTTAAATCCCCGAAAACTCACAAAACAGCGTCG-TTGGCTTAGGTT
1 GTGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAACTCACAAAACGGCGTCGTTTGGCTTAGGTT
14866315 TTTTGCG
66 TTTTGCG
* * * * * *
14866322 GCGCTTTCTCAAAAACACCGCTAAATCCCCGAAAGCTCACAAAACGACGTCGTTGGGCTTAGGTT
1 GTGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAACTCACAAAACGGCGTCGTTTGGCTTAGGTT
14866387 TTTTGCG
66 TTTTGCG
**
14866394 ACGCTTT-TTAAAA
1 GTGCTTTCTTAAAA
14866407 GATGCCACTA
Statistics
Matches: 140, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
71 68 0.49
72 24 0.17
73 48 0.34
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (72 bp):
GTGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAACTCACAAAACGGCGTCGTTTGGCTTAGGTT
TTTTGCG
Found at i:14868844 original size:21 final size:21
Alignment explanation
Indices: 14868818--14868866 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
14868808 TATGGTAAGT
**
14868818 TTTAATAACATTAAATGAATA
1 TTTAATAACATTAAAAAAATA
* *
14868839 TTTAATATCTTTAAAAAAATA
1 TTTAATAACATTAAAAAAATA
14868860 TTTAATA
1 TTTAATA
14868867 TAAATTTGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (21 bp):
TTTAATAACATTAAAAAAATA
Found at i:14876182 original size:35 final size:36
Alignment explanation
Indices: 14876097--14876248 Score: 211
Period size: 36 Copynumber: 4.3 Consensus size: 36
14876087 TAAGAATTTT
* *
14876097 TATTTTAAAAATACAAATGATTGCATTAGGTATAAAA
1 TATTTT-AAATTAAAAATGATTGCATTAGGTATAAAA
* *
14876134 TATTTTAAATTAAAAATGATTGTATTAGGAAT-AAA
1 TATTTTAAATTAAAAATGATTGCATTAGGTATAAAA
*
14876169 TTTTTTAAATTAAAAATGATTGCATTAGGTATAAAA
1 TATTTTAAATTAAAAATGATTGCATTAGGTATAAAA
*
14876205 TATTTTAAATTAAAAA--ATTGTATTAGGTATAAAA
1 TATTTTAAATTAAAAATGATTGCATTAGGTATAAAA
*
14876239 TAATTTAAAT
1 TATTTTAAAT
14876249 CAATTTATAA
Statistics
Matches: 104, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
34 26 0.25
35 32 0.31
36 40 0.38
37 6 0.06
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.40
Consensus pattern (36 bp):
TATTTTAAATTAAAAATGATTGCATTAGGTATAAAA
Found at i:14876280 original size:25 final size:24
Alignment explanation
Indices: 14876252--14876298 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
14876242 TTTAAATCAA
*
14876252 TTTATAAT-TATGATATTTTATTATG
1 TTTA-AATATATGAT-TTATATTATG
14876277 TTTAAATATATGATTTATATTA
1 TTTAAATATATGATTTATATTA
14876299 CAAGTAAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.57
Consensus pattern (24 bp):
TTTAAATATATGATTTATATTATG
Found at i:14876455 original size:3 final size:3
Alignment explanation
Indices: 14876447--14876513 Score: 125
Period size: 3 Copynumber: 22.3 Consensus size: 3
14876437 TTCAAAGAAA
*
14876447 AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14876495 AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
14876514 GCTAAGATAC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14876661 original size:15 final size:16
Alignment explanation
Indices: 14876641--14876672 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14876631 TTTCAAATTT
14876641 TATAA-TTTTTAAAAA
1 TATAATTTTTTAAAAA
14876656 TATAATTTTTTAAAAA
1 TATAATTTTTTAAAAA
14876672 T
1 T
14876673 TTATAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TATAATTTTTTAAAAA
Found at i:14876717 original size:6 final size:6
Alignment explanation
Indices: 14876681--14876709 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
14876671 ATTTATAAAT
14876681 ATTTTA ATTTTA ATTTTA ATTTTA ATTTT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTT
14876710 TTATTTTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
ATTTTA
Found at i:14877039 original size:10 final size:11
Alignment explanation
Indices: 14877012--14877036 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14877002 TTTTTAACAC
14877012 AAAATAATAAA
1 AAAATAATAAA
14877023 AAAATAATAAA
1 AAAATAATAAA
14877034 AAA
1 AAA
14877037 TAAGATACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAATAATAAA
Found at i:14877254 original size:20 final size:20
Alignment explanation
Indices: 14877206--14877257 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
14877196 TGTTATAAAT
**
14877206 ATTTTAAA-TTTTAAAAATT
1 ATTTTAAATTTTTAAAAAAC
* *
14877225 ATATTGAATTTTTAAAAAAC
1 ATTTTAAATTTTTAAAAAAC
14877245 ATTTTAAATTTTT
1 ATTTTAAATTTTT
14877258 TTGTAATTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 6 0.23
20 20 0.77
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTTTAAATTTTTAAAAAAC
Found at i:14879348 original size:3 final size:3
Alignment explanation
Indices: 14879333--14879376 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
14879323 ACTAATTAGG
* *
14879333 TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA -TA GGTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TT
14879377 GTATTAGTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
2 2 0.06
3 32 0.89
4 2 0.06
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:14879356 original size:18 final size:18
Alignment explanation
Indices: 14879333--14879441 Score: 59
Period size: 18 Copynumber: 5.8 Consensus size: 18
14879323 ACTAATTAGG
14879333 TTATTACTATTATTATTA
1 TTATTACTATTATTATTA
*
14879351 TTATTATTATTATAGGTATTA
1 TTATTACTATTAT---TATTA
*
14879372 TTATT-GTATTAGTTTATATA
1 TTATTACTATTA--TTAT-TA
14879392 TCTATTTACCT-TT-TTA-TA
1 T-TA-TTA-CTATTATTATTA
14879410 TATATTA-TATTATT-TTA
1 T-TATTACTATTATTATTA
14879427 TTATGTACTATTATT
1 TTAT-TACTATTATT
14879442 TTAATTCTTT
Statistics
Matches: 72, Mismatches: 4, Indels: 30
0.68 0.04 0.28
Matches are distributed among these distances:
15 1 0.01
16 5 0.07
17 10 0.14
18 24 0.33
19 3 0.04
20 11 0.15
21 12 0.17
22 3 0.04
23 2 0.03
24 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (18 bp):
TTATTACTATTATTATTA
Found at i:14879818 original size:16 final size:16
Alignment explanation
Indices: 14879797--14879827 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14879787 TACAATTTTT
14879797 ATATACATATATATAC
1 ATATACATATATATAC
14879813 ATATACATATATATA
1 ATATACATATATATA
14879828 TCTTTTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATACATATATATAC
Found at i:14880335 original size:74 final size:74
Alignment explanation
Indices: 14880214--14880358 Score: 238
Period size: 74 Copynumber: 2.0 Consensus size: 74
14880204 TCTTTTCAAA
* * *
14880214 CTCAAGTTTTAAACGATCTCGGGGATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATCCC
1 CTCAAGTTTTAAACGATCTCGGGAATGAAGAAGAGATCGTGTCCTAACTTACTGGCCATGATCCC
14880279 TTTTTTTGT
66 TTTTTTTGT
*
14880288 CTCAAGTTTTAAGCGATCTCGGGAATGAAG-AGAAGATCGTGTCCTAACTTACTGGCCATGATCC
1 CTCAAGTTTTAAACGATCTCGGGAATGAAGAAG-AGATCGTGTCCTAACTTACTGGCCATGATCC
14880352 CTTTTTT
65 CTTTTTT
14880359 AAATACAAGA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
73 2 0.03
74 64 0.97
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (74 bp):
CTCAAGTTTTAAACGATCTCGGGAATGAAGAAGAGATCGTGTCCTAACTTACTGGCCATGATCCC
TTTTTTTGT
Found at i:14883383 original size:12 final size:12
Alignment explanation
Indices: 14883366--14883411 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
14883356 TCACTTGAAA
14883366 AAAAAAGAAAAG
1 AAAAAAGAAAAG
*
14883378 AAAAAATAAAAG
1 AAAAAAGAAAAG
*
14883390 AAAAGAAG-AACG
1 AAAA-AAGAAAAG
14883402 -AAAAAGAAAA
1 AAAAAAGAAAA
14883412 AGGAGAGGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
10 3 0.11
11 5 0.18
12 18 0.64
13 2 0.07
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.02
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:14883388 original size:17 final size:16
Alignment explanation
Indices: 14883363--14883411 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 16
14883353 ACTTCACTTG
14883363 AAAAAAAAAGAAAAGA
1 AAAAAAAAAGAAAAGA
14883379 AAAAATAAAAGAAAAGA
1 AAAAA-AAAAGAAAAGA
*
14883396 AGAACGAAAAAGAAAA
1 A-AA-AAAAAAGAAAA
14883412 AGGAGAGGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 5 0.17
17 12 0.41
18 11 0.38
19 1 0.03
ACGTcount: A:0.82, C:0.02, G:0.14, T:0.02
Consensus pattern (16 bp):
AAAAAAAAAGAAAAGA
Found at i:14884349 original size:50 final size:50
Alignment explanation
Indices: 14884287--14885418 Score: 638
Period size: 50 Copynumber: 22.6 Consensus size: 50
14884277 GGTTGCAGTT
*
14884287 AAAAGGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
1 AAAA-GATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
** * * * * * * * **
14884338 AATGGACTGAAGCTACAACGGCGAATCATGCTTCCCCT-ACATTGCAATTA
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTT-CCCTGGCAGTGCAGTGG
* * **
14884388 AAAATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* **** * * * * * **
14884438 AACAGATTGAAGTTGTAACGACGAATCTTGCTTCCCCGACATTG-AGATTA
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAG-TGG
* ** * *
14884488 AAAAGATTGAAGCCACAATGATGAATCTTACTTCCCTGGCGGTGTAGTGG
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* * * * * * **
14884538 AACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTA
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* * * *
14884588 AAAAGATTAAAGCCACAACGGTGAATCTTACTTCCCTAGC-GATGAAGTGG
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAG-TGCAGTGG
* * * * * * * **
14884638 AACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTA
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* *
14884688 AAAAGATTGAAGCCATAACGGTGAATCTTACTTCCCTGG-AGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCA-GTGCAGTGG
* ** * * * * * * * **
14884738 AACAGATTGAAGTTACAATGGTC-AATCTTGCTTCCCCGACATTCCAATTA
1 AAAAGATTGAAGCCACAACGG-CGAATCTTACTTCCCTGGCAGTGCAGTGG
* *
14884788 AAAAGATTGAAGCCACGACGGTGAATCTTACTTCCCTGGCAGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* ** * * * * * * **
14884838 AATAGATTGAAGGTACAACGGCGAATCTTGCTTCCCCGACATTACAATTA
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* ** * *
14884888 AAAAGATTGAAGCCACAACGGCGAACCTTACTTCCCTGGTTGCGCAGTAG
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* ** * * ** * * **
14884938 AATAGATTGAAGGTACAACGACGAATCTTGCTTTCCC-AACATTGCAATTA
1 AAAAGATTGAAGCCACAACGGCGAATCTTAC-TTCCCTGGCAGTGCAGTGG
* * **
14884988 AAAAGATTGAAACCACAACGGGGAATCTTAC-TCCTCTGGTGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCC-CTGGCAGTGCAGTGG
* * * * * * * * *
14885038 AACAA-ATTGAAGCTACAATGGCGAAACTTGCTTCCCCGACATTGCAAT-T
1 AA-AAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* ** * **
14885087 AAATAGATTGAAGCCATAACAACGTATCTTACTTCCCTGGTGGTGCAGTGG
1 AAA-AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* * * *** ** * **
14885138 AACAGATTGAAG-TACAACGGCGAATCTTGCTTCCCCAACTTTGCAATTA
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* * * * *
14885187 AAAAGATTAAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTACAGTGG
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* * * * * * * **
14885237 AATAGATTGAATG-TACAATGGCGAATCTTGCTT-CCTCGACATTGCAATTA
1 AAAAGATTGAA-GCCACAACGGCGAATCTTACTTCCCT-GGCAGTGCAGTGG
*
14885287 AAAAGATTGAAGCCACAACGG-GAAATCTTACTTCCCTGG-AGGTGTAGTGG
1 AAAAGATTGAAGCCACAACGGCG-AATCTTACTTCCCTGGCA-GTGCAGTGG
* * * * * * * * * *
14885337 AACAGATTGAAGCTACAATGGTGAATCATGCTTCCCTGACATTGCAAT-T
1 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* *
14885386 AGAAAGATTGAAGCCACAATGACGAATCTTACT
1 A-AAAGATTGAAGCCACAACGGCGAATCTTACT
14885419 GATACGAGTC
Statistics
Matches: 768, Mismatches: 285, Indels: 57
0.69 0.26 0.05
Matches are distributed among these distances:
48 4 0.01
49 50 0.07
50 687 0.89
51 27 0.04
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (50 bp):
AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
Found at i:14884463 original size:100 final size:100
Alignment explanation
Indices: 14884279--14885418 Score: 1509
Period size: 100 Copynumber: 11.4 Consensus size: 100
14884269 ACCCCTGAGG
* * * **
14884279 TTGCAGTTAAAAGGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAATGGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* * *
14884344 CTGAAGCTACAACGGCGAATCATGCTTCCCCTACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* *
14884379 TTGCAATTAAAAATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* ** *
14884444 TTGAAGTTGTAACGACGAATCTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * *
14884479 TTG-AGATTAAAAAGATTGAAGCCACAATGATGAATCTTACTTCCCTGGCGGTGTAGTGGAACAG
1 TTGCA-ATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAG
*
14884543 ATTGAAGCTACAACGGCGAATCTTGCTTCCCTGACA
65 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * *
14884579 TTGCAATTAAAAAGATTAAAGCCACAACGGTGAATCTTACTTCCCTAGCGATGAAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* *
14884644 TTGAAGCTACAACGGTGAATCTTGCTTCCCTGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* *
14884679 TTGCAATTAAAAAGATTGAAGCCATAACGGTGAATCTTACTTCCCTGGAGGTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* *
14884744 TTGAAGTTACAATGGTC-AATCTTGCTTCCCCGACA
66 TTGAAGCTACAACGG-CGAATCTTGCTTCCCCGACA
* * * *
14884779 TTCCAATTAAAAAGATTGAAGCCACGACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAATAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
*
14884844 TTGAAGGTACAACGGCGAATCTTGCTTCCCCGACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * ** * * *
14884879 TTACAATTAAAAAGATTGAAGCCACAACGGCGAACCTTACTTCCCTGGTTGCGCAGTAGAATAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* * * *
14884944 TTGAAGGTACAACGACGAATCTTGCTTTCCCAACA
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * *
14884979 TTGCAATTAAAAAGATTGAAACCACAACGGGGAATCTTAC-TCCTCTGGTGGTGCAGTGGAACAA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAG
* *
14885043 ATTGAAGCTACAATGGCGAAACTTGCTTCCCCGACA
65 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * *** * *
14885079 TTGCAATTAAATAGATTGAAGCCATAACAACGTATCTTACTTCCCTGGTGGTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* *
14885144 TTGAAG-TACAACGGCGAATCTTGCTTCCCCAACT
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * * *
14885178 TTGCAATTAAAAAGATTAAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTACAGTGGAATAGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* *
14885243 TTGAATG-TACAATGGCGAATCTTGCTTCCTCGACA
66 TTGAA-GCTACAACGGCGAATCTTGCTTCCCCGACA
* *
14885278 TTGCAATTAAAAAGATTGAAGCCACAACGG-GAAATCTTACTTCCCTGGAGGTGTAGTGGAACAG
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTG-AATCTTACTTCCCTGGCGGTGCAGTGGAACAG
* * * *
14885342 ATTGAAGCTACAATGGTGAATCATGCTTCCCTGACA
65 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* * **
14885378 TTGCAATTAGAAAGATTGAAGCCACAATGACGAATCTTACT
1 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACT
14885419 GATACGAGTC
Statistics
Matches: 915, Mismatches: 115, Indels: 20
0.87 0.11 0.02
Matches are distributed among these distances:
99 90 0.10
100 820 0.90
101 5 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (100 bp):
TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
TTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
Found at i:14887336 original size:50 final size:50
Alignment explanation
Indices: 14886706--14887358 Score: 401
Period size: 50 Copynumber: 13.1 Consensus size: 50
14886696 CCCCCTATCA
** * ** * * * *
14886706 CTTACTTTTCTGGCAGTGCAGTGGAATAGATTGAAGCTACAATGGTGAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
* * * ** * * *
14886756 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
* ** *
14886806 CTTACTTCCCTGGAGGTG-AGTGGAACAGATTGAAGCCACAACGGCAAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
* ** * * * * *
14886855 CTTGCTTCCCTGATGTTGCAATTAAAAAGATTGAAGCCACAATGGTGAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
* * ** * * * *
14886905 CTTACTTTCCTGGCTGTGCAGTGGAACATATAGAAGCTAC-ACTGGCAAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAAC-GGCGAAT
* * * ** * * ***
14886955 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAATGAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
* * ** * * *
14887005 CTTACTTCCTTGGTGGTGCAGTGCAACAGATTGAAGCTACAACAGTGAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
* * * ** * *
14887055 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
* ** *
14887105 CTTACTTCCCTGGCGGTGCAGTTGAACAGATTGAAGTTACAATGGCGAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
* * * ** * * *
14887155 CTTGCTTCCCCGACATTGCATTTAAAAAGATTAAAGCCACAACGGCGAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
* *** * * **
14887205 CTTACTTCCCTGGCGGTGTAGCGGAACAGATTGAAGCTATAACGATGAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
* ****** * * *
14887255 CTTGCTTCCCCAAATTTGCAATTAAAAAGATTGAAGCCACAACGGTGAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
* * * ** * *
14887305 TTTACTTCCTTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGACGAAT
1 CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
14887355 CTTA
1 CTTA
14887359 TCATATCAAA
Statistics
Matches: 432, Mismatches: 168, Indels: 6
0.71 0.28 0.01
Matches are distributed among these distances:
49 40 0.09
50 390 0.90
51 2 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (50 bp):
CTTACTTCCCTGGCGGTGCAGTTAAACAGATTGAAGCCACAACGGCGAAT
Found at i:14887349 original size:100 final size:100
Alignment explanation
Indices: 14886706--14887357 Score: 869
Period size: 100 Copynumber: 6.5 Consensus size: 100
14886696 CCCCCTATCA
** * * * *
14886706 CTTACTTTTCTGGCAGTGCAGTGGAATAGATTGAAGCTACAATGGTGAATCTTGCTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
*
14886771 TTGCAATTAAAAAGATTGAAGCCACAATGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * **
14886806 CTTACTTCCCTGGAGGTG-AGTGGAACAGATTGAAGCCACAACGGCAAATCTTGCTTCCCTGATG
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* *
14886870 TTGCAATTAAAAAGATTGAAGCCACAATGGTGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
14886905 CTTACTTTCCTGGCTGTGCAGTGGAACATATAGAAGCTAC-ACTGGCAAATCTTGCTTCCCCGAC
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC-GGCGAATCTTGCTTCCCCGAC
***
14886969 ATTGCAATTAAAAAGATTGAAGCCACAACAATGAAT
65 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * *
14887005 CTTACTTCCTTGGTGGTGCAGTGCAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
14887070 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * *
14887105 CTTACTTCCCTGGCGGTGCAGTTGAACAGATTGAAGTTACAATGGCGAATCTTGCTTCCCCGACA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
* *
14887170 TTGCATTTAAAAAGATTAAAGCCACAACGGCGAAT
66 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * ** *
14887205 CTTACTTCCCTGGCGGTGTAGCGGAACAGATTGAAGCTATAACGATGAATCTTGCTTCCCC-AAA
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
*
14887269 TTTGCAATTAAAAAGATTGAAGCCACAACGGTGAAT
66 -TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * *
14887305 TTTACTTCCTTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGACGAATCTT
1 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTT
14887358 ATCATATCAA
Statistics
Matches: 483, Mismatches: 65, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
99 91 0.19
100 390 0.81
101 2 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (100 bp):
CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACA
TTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
Found at i:14889005 original size:3 final size:3
Alignment explanation
Indices: 14888989--14889035 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
14888979 ACTAATAAGG
* *
14888989 TTA TTA CTA CTA TTA TTA TTA TTA TTA TTA TTA -TA TGTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
14889034 TT
1 TT
14889036 GTATTAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:14889386 original size:20 final size:21
Alignment explanation
Indices: 14889326--14889415 Score: 67
Period size: 20 Copynumber: 4.2 Consensus size: 21
14889316 TTTATTCTAC
* *
14889326 ATACATATCTTTGATTTATATAT
1 ATACATAT-TTT-ATATATTTAT
* *
14889349 ATACATA-CTTATATATTTTT
1 ATACATATTTTATATATTTAT
*
14889369 ATATATATTTTATA-ATTTAT
1 ATACATATTTTATATATTTAT
* * *
14889389 ATACATATCTATATATATCTGT
1 ATACATAT-TTTATATATTTAT
14889411 ATACA
1 ATACA
14889416 CTTTTTTTAT
Statistics
Matches: 53, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
20 25 0.47
21 12 0.23
22 9 0.17
23 7 0.13
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (21 bp):
ATACATATTTTATATATTTAT
Found at i:14889391 original size:9 final size:10
Alignment explanation
Indices: 14889342--14889406 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
14889332 ATCTTTGATT
*
14889342 TATATATATA
1 TATATTTATA
* *
14889352 CATACTTATA
1 TATATTTATA
*
14889362 TATTTTTATA
1 TATATTTATA
14889372 TATATTT-TA
1 TATATTTATA
14889381 TA-ATTTATA
1 TATATTTATA
*
14889390 TACATATCTATA
1 T--ATATTTATA
14889402 TATAT
1 TATAT
14889407 CTGTATACAC
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
8 4 0.09
9 7 0.16
10 24 0.56
11 1 0.02
12 7 0.16
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (10 bp):
TATATTTATA
Found at i:14889487 original size:10 final size:10
Alignment explanation
Indices: 14889472--14889497 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14889462 TTACAATTTT
14889472 TATATACATA
1 TATATACATA
14889482 TATATACATA
1 TATATACATA
14889492 TATATA
1 TATATA
14889498 TCTTTTACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (10 bp):
TATATACATA
Found at i:14891195 original size:20 final size:20
Alignment explanation
Indices: 14891172--14891209 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14891162 TAATTAAATA
14891172 ATGTAATTATTATTATTTGT
1 ATGTAATTATTATTATTTGT
14891192 ATGTAATTATTATTATTT
1 ATGTAATTATTATTATTT
14891210 AGTTTATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (20 bp):
ATGTAATTATTATTATTTGT
Found at i:14891237 original size:29 final size:31
Alignment explanation
Indices: 14891204--14891269 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 31
14891194 GTAATTATTA
* * *
14891204 TTATTTAGTTTATAT-T-TATATGTATATGT
1 TTATTTACTTTATATATGTACATGTATATAT
*
14891233 TTATTTTCTTTATATATGTACATGTATATAT
1 TTATTTACTTTATATATGTACATGTATATAT
14891264 TT-TTTA
1 TTATTTA
14891270 ATGAATATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
29 13 0.43
30 4 0.13
31 13 0.43
ACGTcount: A:0.27, C:0.03, G:0.08, T:0.62
Consensus pattern (31 bp):
TTATTTACTTTATATATGTACATGTATATAT
Found at i:14891269 original size:25 final size:25
Alignment explanation
Indices: 14891220--14891269 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
14891210 AGTTTATATT
* *
14891220 TATATGTATATGTTTATTTTCTTTA
1 TATATGTACATGTATATTTTCTTTA
14891245 TATATGTACATGTATATATTT-TTTA
1 TATATGTACATGTATAT-TTTCTTTA
14891270 ATGAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.28, C:0.04, G:0.08, T:0.60
Consensus pattern (25 bp):
TATATGTACATGTATATTTTCTTTA
Found at i:14893182 original size:113 final size:114
Alignment explanation
Indices: 14893044--14893265 Score: 412
Period size: 113 Copynumber: 1.9 Consensus size: 114
14893034 ATTTAAAATT
14893044 TTATAAATTATAAAAGGGTCTAAAT-AAAAAAATTTCCACTTGCTAGCTCTTGGACTTAAAGTGA
1 TTATAAATTATAAAAGGGTCTAAATAAAAAAAATTTCCACTTGCTAGCTCTTGGACTTAAA-TGA
14893108 TAAAAAATCTAT-AAAAAAAATTGACAGTGAGTAGTAAGATTCAGATCAA
65 TAAAAAATCTATAAAAAAAAATTGACAGTGAGTAGTAAGATTCAGATCAA
14893157 TTATAAATTATAAAAGGGTCTAAATAAAAAAAATTTCCACTTGCTAGCTCTTGGACTTAAATGAT
1 TTATAAATTATAAAAGGGTCTAAATAAAAAAAATTTCCACTTGCTAGCTCTTGGACTTAAATGAT
14893222 AAAAAATCTATAAAAAAAAAATTGACAGTGAGTAGTAAGATTCA
66 AAAAAATCTAT-AAAAAAAAATTGACAGTGAGTAGTAAGATTCA
14893266 AATAAAATAT
Statistics
Matches: 106, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
113 40 0.38
114 35 0.33
115 31 0.29
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.29
Consensus pattern (114 bp):
TTATAAATTATAAAAGGGTCTAAATAAAAAAAATTTCCACTTGCTAGCTCTTGGACTTAAATGAT
AAAAAATCTATAAAAAAAAATTGACAGTGAGTAGTAAGATTCAGATCAA
Found at i:14902148 original size:21 final size:20
Alignment explanation
Indices: 14902122--14902161 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
14902112 CGACTGTAAT
*
14902122 TAAATTTAAAATTTTAAAATA
1 TAAATTT-AAATTTAAAAATA
14902143 TAAATTTAAATTTAAAAAT
1 TAAATTTAAATTTAAAAAT
14902162 TAACTCCAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAATTTAAATTTAAAAATA
Found at i:14902161 original size:14 final size:14
Alignment explanation
Indices: 14902121--14902162 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
14902111 ACGACTGTAA
*
14902121 TTAAATTTAAAATT
1 TTAAATTTAAAAAT
* *
14902135 TTAAA-ATATAAAT
1 TTAAATTTAAAAAT
14902148 TTAAATTTAAAAAT
1 TTAAATTTAAAAAT
14902162 T
1 T
14902163 AACTCCAGTA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TTAAATTTAAAAAT
Found at i:14903949 original size:50 final size:50
Alignment explanation
Indices: 14903839--14904022 Score: 138
Period size: 50 Copynumber: 3.6 Consensus size: 50
14903829 ACATTTGGTT
* * * *
14903839 GATGAGA--TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGA
1 GATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGGCATGGGCA-C--CGA
* * * * * *
14903890 GATTATGAGAGGTCCTATGTAAGAGCATTTCTGAGACATGGCGTTGGCACCGA
1 G---ATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGGCATGGGCACCGA
* *
14903943 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 GATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGGCATGGGCACCGA
* ** ** *
14903993 TATGAGAACTCCCGTGTAAGACCATATCTG
1 GATGAGAGGTCCCACGTAAGACCATGTCTG
14904023 GGATATGGAA
Statistics
Matches: 108, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
50 65 0.60
51 1 0.01
53 3 0.03
54 6 0.06
55 1 0.01
56 32 0.30
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
GATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGGCATGGGCACCGA
Found at i:14904023 original size:50 final size:50
Alignment explanation
Indices: 14903907--14904030 Score: 140
Period size: 50 Copynumber: 2.5 Consensus size: 50
14903897 AGAGGTCCTA
* * * * * **
14903907 TGTAAGAGCATTTCTGAGACATGGCGTTGGCACCGAGATGAGAGGTCCCC
1 TGTAAGACCATATCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCC
* * * *
14903957 CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCG
1 TGTAAGACCATATCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCC
*
14904007 TGTAAGACCATATCTGGGATATGG
1 TGTAAGACCATATCTGGGACATGG
14904031 AATTGGAAGT
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 61 1.00
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.22
Consensus pattern (50 bp):
TGTAAGACCATATCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCC
Found at i:14910018 original size:34 final size:34
Alignment explanation
Indices: 14909980--14910060 Score: 144
Period size: 34 Copynumber: 2.4 Consensus size: 34
14909970 CATTTCTTCT
*
14909980 TGTTCTTGAAAAACTGTTTAAGATATTGAAAAAC
1 TGTTCTTGAAAAACTGCTTAAGATATTGAAAAAC
*
14910014 TGTTCTTGAAAAACTGCTTAAGATATTGAAAACC
1 TGTTCTTGAAAAACTGCTTAAGATATTGAAAAAC
14910048 TGTTCTTGAAAAA
1 TGTTCTTGAAAAA
14910061 ATTGATGTGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.35
Consensus pattern (34 bp):
TGTTCTTGAAAAACTGCTTAAGATATTGAAAAAC
Found at i:14910044 original size:20 final size:19
Alignment explanation
Indices: 14909985--14910051 Score: 63
Period size: 20 Copynumber: 3.7 Consensus size: 19
14909975 CTTCTTGTTC
14909985 TTGAAAAACTGTTTAAGATA
1 TTGAAAAACTG-TTAAGATA
*
14910005 TTGAAAAACTG-T----TC
1 TTGAAAAACTGTTAAGATA
14910019 TTGAAAAACTGCTTAAGATA
1 TTGAAAAACTG-TTAAGATA
*
14910039 TTGAAAACCTGTT
1 TTGAAAAACTGTT
14910052 CTTGAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 13
0.70 0.06 0.24
Matches are distributed among these distances:
14 12 0.32
16 1 0.03
18 1 0.03
19 2 0.05
20 22 0.58
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.34
Consensus pattern (19 bp):
TTGAAAAACTGTTAAGATA
Found at i:14912324 original size:34 final size:35
Alignment explanation
Indices: 14912266--14912332 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
14912256 CAAACGCTAG
14912266 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
14912301 AAAATATTTTCTAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
14912333 CATTTTACAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:14916467 original size:19 final size:18
Alignment explanation
Indices: 14916432--14916470 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
14916422 TTAAATTTAT
*
14916432 TTAGTTTAAATATGGTCC
1 TTAGTTTAAATAGGGTCC
*
14916450 TTAGTCTTAAATCGGGTCC
1 TTAGT-TTAAATAGGGTCC
14916469 TT
1 TT
14916471 TTGTGACACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.44
Consensus pattern (18 bp):
TTAGTTTAAATAGGGTCC
Found at i:14919460 original size:40 final size:40
Alignment explanation
Indices: 14919395--14919470 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
14919385 ATATCACGAC
*
14919395 AATGAGTAAGACCATAAGTGAAAGATG-TTATGACATAAAA
1 AATGAGTAAAACCATAAGTGAAAGATGCTT-TGACATAAAA
*
14919435 AATGGGTAAAACCAT-AGCTGAAAGATGCTTTGACAT
1 AATGAGTAAAACCATAAG-TGAAAGATGCTTTGACAT
14919471 CATATAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
39 2 0.06
40 28 0.88
41 2 0.06
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGAGTAAAACCATAAGTGAAAGATGCTTTGACATAAAA
Found at i:14919968 original size:6 final size:7
Alignment explanation
Indices: 14919951--14919981 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
14919941 AAAAAGGGTA
14919951 AAAAAAG
1 AAAAAAG
14919958 AAAAAAG
1 AAAAAAG
14919965 AAAAAAG
1 AAAAAAG
14919972 AAAAATAG
1 AAAAA-AG
14919980 AA
1 AA
14919982 GTGTGAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 19 0.83
8 4 0.17
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:14943523 original size:25 final size:25
Alignment explanation
Indices: 14943495--14943543 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
14943485 CCCGTAAACC
*
14943495 AAAAATAAA-CCCAATTTTATAAATA
1 AAAAATAAAGCCAAATTTTA-AAATA
14943520 AAAAATAAAGCCAAATTTTAAAAT
1 AAAAATAAAGCCAAATTTTAAAAT
14943544 GTCCATAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.61, C:0.10, G:0.02, T:0.27
Consensus pattern (25 bp):
AAAAATAAAGCCAAATTTTAAAATA
Found at i:14957733 original size:44 final size:44
Alignment explanation
Indices: 14957685--14957934 Score: 136
Period size: 44 Copynumber: 5.5 Consensus size: 44
14957675 CTAGTAATCC
* *
14957685 TATCTCCTTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCT
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCT
* * ** * *
14957729 TATCTCTCTGA-AGTTACAGTAGAGTAGATTGTATCAGATTGAAGCCAGAAATCT
1 TATCTCCCTGAGA-TTACAGTGGAGCGGA-T-TA--A-AAT-AA---AG-GATCT
* * ** * *
14957783 TATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCT--AGTAATCC
1 TATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAAG-GATCT
14957827 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCT
1 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCT
* * * *** *
14957871 TATCTCTCTGA-AGTTACAGTAGAGAGGA-TCGCAT-CAGG-TCT
1 TATCTCCCTGAGA-TTACAGTGGAGCGGATTAAAATAAAGGATCT
14957912 TATCTCCCTGAGATTACAGTGGA
1 TATCTCCCTGAGATTACAGTGGA
14957935 ATAGACTGAA
Statistics
Matches: 160, Mismatches: 29, Indels: 37
0.71 0.13 0.16
Matches are distributed among these distances:
41 22 0.14
42 4 0.03
43 8 0.05
44 82 0.51
45 3 0.02
46 2 0.01
48 1 0.01
49 2 0.01
50 3 0.02
51 1 0.01
52 1 0.01
53 4 0.03
54 26 0.16
55 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCT
Done.