Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 64 of 198
Found at i:19776656 original size:16 final size:17
Alignment explanation
Indices: 19776635--19776670 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
19776625 ATTAATTAGA
*
19776635 AATTCATTTGTGA-ATT
1 AATTCACTTGTGACATT
19776651 AATTCACTTGTGACATT
1 AATTCACTTGTGACATT
19776668 AAT
1 AAT
19776671 GGTGTGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (17 bp):
AATTCACTTGTGACATT
Found at i:19777883 original size:21 final size:20
Alignment explanation
Indices: 19777843--19777883 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
19777833 TAACTATTCC
*
19777843 AAAAATAATATTATTTTAAT
1 AAAAATAATATTAATTTAAT
*
19777863 AAAATTAATATTTAATTTAAT
1 AAAAATAATA-TTAATTTAAT
19777884 TTAATACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AAAAATAATATTAATTTAAT
Found at i:19778911 original size:24 final size:25
Alignment explanation
Indices: 19778884--19778937 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
19778874 TATATATGTT
*
19778884 TTATAATTGT-TTATAATATTT-ATA
1 TTATAATTATATTATAAT-TTTGATA
19778908 TTAT-ATTATATTATAATTTTGATA
1 TTATAATTATATTATAATTTTGATA
19778932 TCTATA
1 T-TATA
19778938 CGAGATGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
23 7 0.28
24 15 0.60
25 3 0.12
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (25 bp):
TTATAATTATATTATAATTTTGATA
Found at i:19784571 original size:35 final size:35
Alignment explanation
Indices: 19784531--19784624 Score: 98
Period size: 35 Copynumber: 2.7 Consensus size: 35
19784521 CCTCTTTCAA
* * *
19784531 GGTGTCGCTCCATAGAGCTTGTAGACCATTTTCAT
1 GGTGTCGCTCCATAGAGCCTATAGACCATTTCCAT
* * * **
19784566 TGTGTCACTCCGTAGCTCCTATAGACCATTTCCAT
1 GGTGTCGCTCCATAGAGCCTATAGACCATTTCCAT
* *
19784601 GGTGTCGCTCCGTAAAGCCTATAG
1 GGTGTCGCTCCATAGAGCCTATAG
19784625 TTAACAATTT
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.32
Consensus pattern (35 bp):
GGTGTCGCTCCATAGAGCCTATAGACCATTTCCAT
Found at i:19788786 original size:20 final size:20
Alignment explanation
Indices: 19788737--19788790 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
19788727 TTGGACAAAT
* *
19788737 GACTAAATCATAATAAATTG
1 GACTAAATCGTAATAAATTA
*
19788757 GACTAAATCGTAATAAGTTA
1 GACTAAATCGTAATAAATTA
19788777 GACTAAATCG-AATA
1 GACTAAATCGTAATA
19788791 GACCTAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 4 0.13
20 27 0.87
ACGTcount: A:0.48, C:0.11, G:0.13, T:0.28
Consensus pattern (20 bp):
GACTAAATCGTAATAAATTA
Found at i:19792058 original size:43 final size:43
Alignment explanation
Indices: 19792010--19792194 Score: 194
Period size: 43 Copynumber: 4.3 Consensus size: 43
19792000 GAAGATATAT
*
19792010 TGTGTGTGCCAGTATAGATT-CTTCGGTTTATCCAATGATGCAC
1 TGTGTGTGCCAGTATAG-TTGCTTCGGTTTATCCGATGATGCAC
* * * * *
19792053 TGTGTGTGCTAGTATAGTTGCTTTGGCTTATCTGATGATGCAT
1 TGTGTGTGCCAGTATAGTTGCTTCGGTTTATCCGATGATGCAC
* * * * *
19792096 TGTGTGTGCCAATATAGATGGTTCAGTTTATCCTATGATGCAC
1 TGTGTGTGCCAGTATAGTTGCTTCGGTTTATCCGATGATGCAC
* * * * *
19792139 TGTGTGTACTAGTATAGTTGCTTTGGTATATCTGATGATGCAC
1 TGTGTGTGCCAGTATAGTTGCTTCGGTTTATCCGATGATGCAC
19792182 T-TCGTGTGCCAGT
1 TGT-GTGTGCCAGT
19792195 GTGCGCCAGT
Statistics
Matches: 112, Mismatches: 28, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
42 3 0.03
43 109 0.97
ACGTcount: A:0.19, C:0.15, G:0.25, T:0.40
Consensus pattern (43 bp):
TGTGTGTGCCAGTATAGTTGCTTCGGTTTATCCGATGATGCAC
Found at i:19792101 original size:86 final size:86
Alignment explanation
Indices: 19792008--19792194 Score: 279
Period size: 86 Copynumber: 2.2 Consensus size: 86
19791998 CTGAAGATAT
* * *
19792008 ATTGTGTGTGCCAGTATAGATTCTTCGGTTTATCCAATGATGCACTGTGTGTGCTAGTATAGTTG
1 ATTGTGTGTGCCAGTATAGATGCTTCAGTTTATCCAATGATGCACTGTGTGTACTAGTATAGTTG
19792073 CTTTGGCT-TATCTGATGATGC
66 CTTTGG-TATATCTGATGATGC
* * *
19792094 ATTGTGTGTGCCAATATAGATGGTTCAGTTTATCCTATGATGCACTGTGTGTACTAGTATAGTTG
1 ATTGTGTGTGCCAGTATAGATGCTTCAGTTTATCCAATGATGCACTGTGTGTACTAGTATAGTTG
19792159 CTTTGGTATATCTGATGATGC
66 CTTTGGTATATCTGATGATGC
*
19792180 ACTT-CGTGTGCCAGT
1 A-TTGTGTGTGCCAGT
19792195 GTGCGCCAGT
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
85 1 0.01
86 88 0.97
87 2 0.02
ACGTcount: A:0.20, C:0.15, G:0.25, T:0.40
Consensus pattern (86 bp):
ATTGTGTGTGCCAGTATAGATGCTTCAGTTTATCCAATGATGCACTGTGTGTACTAGTATAGTTG
CTTTGGTATATCTGATGATGC
Found at i:19796026 original size:13 final size:13
Alignment explanation
Indices: 19796008--19796032 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19795998 TAATTTATGT
19796008 GTGTGAAAATTTC
1 GTGTGAAAATTTC
19796021 GTGTGAAAATTT
1 GTGTGAAAATTT
19796033 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:19797215 original size:44 final size:44
Alignment explanation
Indices: 19797149--19797264 Score: 127
Period size: 44 Copynumber: 2.7 Consensus size: 44
19797139 TCCAATATGT
*
19797149 GATTT-CGTGTAAGACTAC-GTCTGAGACGTTGGCATCGA-ATTGA
1 GATTTACGTGTAAGACT-CTGTCTGGGACGTTGGCATCGATATT-A
*
19797192 GATTTACGTGTAAGACTCTGTCTGGGACAG-TGGCATCGATATTT
1 GATTTACGTGTAAGACTCTGTCTGGGAC-GTTGGCATCGATATTA
*
19797236 GA-TTACATGTAAGAC-CTCGTCTGGGACGT
1 GATTTACGTGTAAGACTCT-GTCTGGGACGT
19797265 AGGGATTGTA
Statistics
Matches: 64, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
42 3 0.05
43 27 0.42
44 30 0.47
45 4 0.06
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (44 bp):
GATTTACGTGTAAGACTCTGTCTGGGACGTTGGCATCGATATTA
Found at i:19799687 original size:24 final size:24
Alignment explanation
Indices: 19799660--19799713 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
19799650 TTTCACTTTT
19799660 TTTTTCATT-TTCCTTT-TCTTGTTC
1 TTTTTCATTCTT--TTTCTCTTGTTC
19799684 TTTTTCATTCTTTTTCTCTTGTTC
1 TTTTTCATTCTTTTTCTCTTGTTC
*
19799708 ATTTTC
1 TTTTTC
19799714 TCTCGACTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 3 0.11
24 22 0.81
25 2 0.07
ACGTcount: A:0.06, C:0.20, G:0.04, T:0.70
Consensus pattern (24 bp):
TTTTTCATTCTTTTTCTCTTGTTC
Found at i:19804561 original size:19 final size:21
Alignment explanation
Indices: 19804534--19804572 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
19804524 TATAATTATA
19804534 AAATAATTAA-AT-TTTACTC
1 AAATAATTAACATATTTACTC
*
19804553 AAATTATTAACATATTTACT
1 AAATAATTAACATATTTACT
19804573 TTTAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 2 0.12
21 6 0.35
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (21 bp):
AAATAATTAACATATTTACTC
Found at i:19805303 original size:34 final size:34
Alignment explanation
Indices: 19805260--19805328 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
19805250 AAAGATTCCT
19805260 TCAACCACCTTGGATAGCAGAATTAAAGTGCTTA
1 TCAACCACCTTGGATAGCAGAATTAAAGTGCTTA
*
19805294 TCAACCACCTTGGATAGCAGCATTAAAGTGCTTA
1 TCAACCACCTTGGATAGCAGAATTAAAGTGCTTA
19805328 T
1 T
19805329 AGAAGCCTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (34 bp):
TCAACCACCTTGGATAGCAGAATTAAAGTGCTTA
Found at i:19810726 original size:35 final size:35
Alignment explanation
Indices: 19810631--19810788 Score: 228
Period size: 35 Copynumber: 4.5 Consensus size: 35
19810621 ACATTGTCAG
* * * *
19810631 TCCAACCATAACATGCCGATGCTTATAATAGCTAA
1 TCCAACCATAACACGCCAATGCTCATAAGAGCTAA
* *
19810666 CCCAACCAAAACAC-CCAATGCTCATAAGAGCTAA
1 TCCAACCATAACACGCCAATGCTCATAAGAGCTAA
19810700 TCCAACCATAACACGCCAATGCTCATAAGAGCTAA
1 TCCAACCATAACACGCCAATGCTCATAAGAGCTAA
**
19810735 TCCAACTGTAACACGCCAATGCTCATAAGAGCTAA
1 TCCAACCATAACACGCCAATGCTCATAAGAGCTAA
*
19810770 TCCAACCGTAACACGCCAA
1 TCCAACCATAACACGCCAA
19810789 ATAGAGAGTA
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
34 29 0.26
35 82 0.74
ACGTcount: A:0.39, C:0.32, G:0.11, T:0.18
Consensus pattern (35 bp):
TCCAACCATAACACGCCAATGCTCATAAGAGCTAA
Found at i:19810782 original size:70 final size:69
Alignment explanation
Indices: 19810631--19810788 Score: 226
Period size: 69 Copynumber: 2.3 Consensus size: 69
19810621 ACATTGTCAG
* * * *
19810631 TCCAACCATAACATGCCGATGCTTATAATAGCTAACCCAACCAAAACACCCAATGCTCATAAGAG
1 TCCAACCATAACACGCCAATGCTCATAAGAGCTAACCCAACCAAAACACCCAATGCTCATAAGAG
19810696 CTAA
66 CTAA
* ***
19810700 TCCAACCATAACACGCCAATGCTCATAAGAGCTAATCCAACTGTAACACGCCAATGCTCATAAGA
1 TCCAACCATAACACGCCAATGCTCATAAGAGCTAACCCAACCAAAACAC-CCAATGCTCATAAGA
19810765 GCTAA
65 GCTAA
*
19810770 TCCAACCGTAACACGCCAA
1 TCCAACCATAACACGCCAA
19810789 ATAGAGAGTA
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
69 41 0.52
70 38 0.48
ACGTcount: A:0.39, C:0.32, G:0.11, T:0.18
Consensus pattern (69 bp):
TCCAACCATAACACGCCAATGCTCATAAGAGCTAACCCAACCAAAACACCCAATGCTCATAAGAG
CTAA
Found at i:19815100 original size:16 final size:16
Alignment explanation
Indices: 19815073--19815113 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
19815063 ATACCCCCTT
19815073 CACCTATTCATTCAACA
1 CACCT-TTCATTCAACA
*
19815090 CACCTTTCATTCTACA
1 CACCTTTCATTCAACA
*
19815106 CATCTTTC
1 CACCTTTC
19815114 TCCCTTTCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.27, C:0.37, G:0.00, T:0.37
Consensus pattern (16 bp):
CACCTTTCATTCAACA
Found at i:19817853 original size:2 final size:2
Alignment explanation
Indices: 19817841--19817882 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
19817831 TGAGAGGTGC
*
19817841 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
19817883 AAAGCATTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:19817964 original size:24 final size:24
Alignment explanation
Indices: 19817915--19817965 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
19817905 ACTTTAATAC
* *
19817915 AAAATAACATTATTAAAATAATAT
1 AAAATAAAATTATTAAAATAAGAT
19817939 AAAATAAAATTATTACAAA-AAGAT
1 AAAATAAAATTATTA-AAATAAGAT
19817963 AAA
1 AAA
19817966 TTGGTAGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (24 bp):
AAAATAAAATTATTAAAATAAGAT
Found at i:19818386 original size:89 final size:92
Alignment explanation
Indices: 19818248--19818426 Score: 222
Period size: 89 Copynumber: 2.0 Consensus size: 92
19818238 CCAAATTACA
* * * * *
19818248 CAATATGTAAATGTCGAGGGTTAAATGTTTTTTAGAATCAAGGAAAAATTGACATAATGAATAAC
1 CAATATGTAAATGTCGAAGATTAAATGTTTATTAGAATCAAGGAAAAATTGACACAATGAATAAA
**
19818313 TGTTGAGGTTTAAATTG-CTATTATTC
66 TGTTGAGGACTAAATTGTCTATTATTC
* * *
19818339 CAATATGTAAATGTTGAAGATT-AAT-TTTATTAGAATCAA-GACTAAATTGACACAATTAATAA
1 CAATATGTAAATGTCGAAGATTAAATGTTTATTAGAATCAAGGA-AAAATTGACACAATGAATAA
*
19818401 ATGTTGATGACTAAATTGTCTATTAT
65 ATGTTGAGGACTAAATTGTCTATTAT
19818427 GCTAATTTTA
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
88 2 0.03
89 44 0.59
90 10 0.13
91 19 0.25
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.37
Consensus pattern (92 bp):
CAATATGTAAATGTCGAAGATTAAATGTTTATTAGAATCAAGGAAAAATTGACACAATGAATAAA
TGTTGAGGACTAAATTGTCTATTATTC
Found at i:19818647 original size:1 final size:1
Alignment explanation
Indices: 19818641--19818665 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
19818631 ATTCAAGAAG
19818641 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
19818666 GAGTTCCGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:19822947 original size:37 final size:39
Alignment explanation
Indices: 19822892--19822971 Score: 96
Period size: 38 Copynumber: 2.1 Consensus size: 39
19822882 TATTTTCAAG
*
19822892 TTTTATATTAGAATA-TTTTTAAAGATTTAAAA-TT-ATT
1 TTTTATATGAGAATATTTTTTAAA-ATTTAAAATTTAATT
*
19822929 TTTTACTATGAGAA-ATTTTTTTAAATTTAAAATTTAATT
1 TTTTA-TATGAGAATATTTTTTAAAATTTAAAATTTAATT
19822968 TTTT
1 TTTT
19822972 CTAATATATT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
37 14 0.38
38 16 0.43
39 7 0.19
ACGTcount: A:0.38, C:0.01, G:0.05, T:0.56
Consensus pattern (39 bp):
TTTTATATGAGAATATTTTTTAAAATTTAAAATTTAATT
Found at i:19822968 original size:22 final size:24
Alignment explanation
Indices: 19822942--19822999 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
19822932 TACTATGAGA
19822942 AATTTTTTTAA-AT-TTAAAATTT
1 AATTTTTTTAATATATTAAAATTT
*
19822964 AATTTTTTCTAATATATTAAATTTT
1 AATTTTTT-TAATATATTAAAATTT
19822989 ATATTCTTTTT
1 A-ATT-TTTTT
19823000 TAATCTTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 8 0.27
23 3 0.10
24 2 0.07
25 9 0.30
26 4 0.13
27 4 0.13
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (24 bp):
AATTTTTTTAATATATTAAAATTT
Found at i:19823362 original size:37 final size:36
Alignment explanation
Indices: 19823308--19823380 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 36
19823298 ATGCTAATTA
*
19823308 TATTTTTAATTTTATAAAT-TATCTTTAAATTTTAAT
1 TATTTTTAAGTTTATAAATCTAT-TTTAAATTTTAAT
* *
19823344 TATTTTTAGAGTTTATAAATCTATTTTTATTTTTAAT
1 TATTTTTA-AGTTTATAAATCTATTTTAAATTTTAAT
19823381 ACATTTTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 8 0.25
37 21 0.66
38 3 0.09
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (36 bp):
TATTTTTAAGTTTATAAATCTATTTTAAATTTTAAT
Found at i:19823959 original size:27 final size:25
Alignment explanation
Indices: 19823885--19823961 Score: 75
Period size: 27 Copynumber: 3.0 Consensus size: 25
19823875 AGTTAGCAAT
* *
19823885 TAATTAATTTTATAAAATTTAAAAA
1 TAATTAATTTTTTAAAATTTTAAAA
* *
19823910 T-ATTAAATTTTTTATAATTTTTAATA
1 TAATT-AATTTTTTA-AAATTTTAAAA
19823936 TAATTAATTTTTTTGAAAATTTTAAA
1 TAATTAA-TTTTTT-AAAATTTTAAA
19823962 GTTAAAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
24 3 0.07
25 9 0.22
26 11 0.27
27 17 0.41
28 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.53
Consensus pattern (25 bp):
TAATTAATTTTTTAAAATTTTAAAA
Found at i:19829176 original size:60 final size:62
Alignment explanation
Indices: 19829104--19829229 Score: 202
Period size: 60 Copynumber: 2.1 Consensus size: 62
19829094 TATTGATTAA
* *
19829104 TAAAAAACTCGAGTAGAGTTAGATACTAAAATTTCAAATTGAATCATCTATAA-T-TAGAGG
1 TAAAAAACTCGAGTAGAGTTAGACACTAAAATTTCAAATTGAACCATCTATAATTATAGAGG
* *
19829164 TAAAAAATTCGAGTAGAGTTGGACACTAAAATTTCAAATTGAACCATCTATAATTATAGAGG
1 TAAAAAACTCGAGTAGAGTTAGACACTAAAATTTCAAATTGAACCATCTATAATTATAGAGG
19829226 TAAA
1 TAAA
19829230 TCCAATTGAT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
60 49 0.82
61 1 0.02
62 10 0.17
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.29
Consensus pattern (62 bp):
TAAAAAACTCGAGTAGAGTTAGACACTAAAATTTCAAATTGAACCATCTATAATTATAGAGG
Found at i:19832544 original size:50 final size:50
Alignment explanation
Indices: 19832489--19832683 Score: 291
Period size: 50 Copynumber: 3.9 Consensus size: 50
19832479 CATTGAGATT
* * *
19832489 ATGAGAGGTCCCATGTAAGACCATATTTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
*
19832539 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
** * *
19832589 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
** *
19832639 ATGAGAACTCCCATGTAAGACCATGTCTGGGACATGACATTGGCA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
19832684 GTACAAAAAA
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 132 1.00
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
Found at i:19832623 original size:100 final size:103
Alignment explanation
Indices: 19832441--19832683 Score: 321
Period size: 100 Copynumber: 2.4 Consensus size: 103
19832431 GGGAATGAGA
* * *
19832441 TCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCATTGAGATTATGAGAGGTCCCATGTA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-CGAG--TATGAGAGGTCCCACGTA
* * * **
19832506 AGACCATATTTGGGACATGGCGTTGGCACCGAGATGAGAGG
63 AGACCATATCTGGGACATGGCATGGGCACCGAGATGAGAAC
* *
19832547 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C-CGAG-ATGAGAGGTCCCCCGTAAGA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGTATGAGAGGTCCCACGTAAGA
* *
19832609 CCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
66 CCATATCTGGGACATGGCATGGGCACCGAGATGAGAAC
*
19832647 TCCCATGTAAGACCATGTCTGGGACATGACATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
19832684 GTACAAAAAA
Statistics
Matches: 123, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
100 84 0.68
103 3 0.02
105 1 0.01
106 35 0.28
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (103 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGTATGAGAGGTCCCACGTAAGA
CCATATCTGGGACATGGCATGGGCACCGAGATGAGAAC
Found at i:19833444 original size:24 final size:24
Alignment explanation
Indices: 19833417--19833466 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
19833407 AGTATAAAAT
19833417 TAATTAGAGAGTGAATGATATATA
1 TAATTAGAGAGTGAATGATATATA
19833441 TAATTAGAGAGTGAATGATATATA
1 TAATTAGAGAGTGAATGATATATA
19833465 TA
1 TA
19833467 GTTAAAGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.00, G:0.20, T:0.34
Consensus pattern (24 bp):
TAATTAGAGAGTGAATGATATATA
Found at i:19833445 original size:28 final size:28
Alignment explanation
Indices: 19833404--19833471 Score: 81
Period size: 24 Copynumber: 2.5 Consensus size: 28
19833394 AATCACCAAA
*
19833404 GATAGTATAAAATTAATTAGAGAGTGAAT
1 GATA-TATATAATTAATTAGAGAGTGAAT
19833433 G--ATATAT-A-TAATTAGAGAGTGAAT
1 GATATATATAATTAATTAGAGAGTGAAT
*
19833457 GATATATATAGTTAA
1 GATATATATAATTAA
19833472 AGCTTATCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
24 17 0.52
25 1 0.03
26 10 0.30
27 1 0.03
28 3 0.09
29 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (28 bp):
GATATATATAATTAATTAGAGAGTGAAT
Found at i:19840184 original size:50 final size:50
Alignment explanation
Indices: 19840076--19840367 Score: 300
Period size: 50 Copynumber: 5.7 Consensus size: 50
19840066 GGGAATGAGA
*
19840076 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTAGGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA---AGA-T--GAGAGG
*
19840132 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGG
* * **
19840182 TCCCATGTAAGACAATGTCTGGGACATGGCGTTGGCACTGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGG
** * * * **
19840232 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGG
* * ** * **
19840282 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTACAGA--AAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA-AGATGAGAGG
* * *
19840331 TCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
19840368 TGTATTATCA
Statistics
Matches: 204, Mismatches: 31, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
49 34 0.17
50 126 0.62
51 2 0.01
52 1 0.00
53 3 0.01
56 38 0.19
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATGAGAGG
Found at i:19840269 original size:100 final size:104
Alignment explanation
Indices: 19840076--19840318 Score: 332
Period size: 100 Copynumber: 2.4 Consensus size: 104
19840066 GGGAATGAGA
*
19840076 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTAGGAGAGGTCCCATGTA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-TGAGATTA-GAGAGGTCCCACGTA
* * **
19840141 AGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGG
64 AGACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAAC
* * *
19840182 TCCCATGTAAGACAATGTCTGGGACATGGCGTTGGCA-C-TGAGA-T-GAGAGGTCCCCCGTAAG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATGAGATTAGAGAGGTCCCACGTAAG
* *
19840243 ACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
66 ACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAAC
* *
19840282 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
19840319 GTACAGAAAA
Statistics
Matches: 123, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
100 81 0.66
102 1 0.01
103 5 0.04
105 1 0.01
106 35 0.28
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (104 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATGAGATTAGAGAGGTCCCACGTAAG
ACCATGTCTGGGACATGGCATGGGCACCAAGATGAGAAC
Found at i:19840311 original size:150 final size:152
Alignment explanation
Indices: 19840082--19840367 Score: 355
Period size: 150 Copynumber: 1.9 Consensus size: 152
19840072 GAGATCCCAT
* **
19840082 GTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTAGGAGAGGTCCCATGTAAGACCA
1 GTAAGACCATGTCTGGGACATGGCATGGGCATC--T-AGATTAGGAGAACTCCCATGTAAGACCA
* * * ** *
19840147 TGTCTGGGACATGGCGTTGGCACCA-AGATGAGAGGTCCCATGTAAGACAATGTCTGGGACATGG
63 TATCTGGGACATGGCATTGGCACCACAGA--AAACATCCCATGTAAGACAATGTCTGGGACATAG
19840211 CGTTGGCACTGAGATGAGAGGTCCCCC
126 CGTTGGCACTGAGATGAGAGGTCCCCC
* *
19840238 GTAAGACCATGTCTGGGACATGGCATGGGCA-C-CGA-TATGAGAACTCCCATGTAAGACCATAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCATCTAGATTAGGAGAACTCCCATGTAAGACCATAT
* ** * *
19840300 CTGGGATATGGCATTGGCAGTACAGAAAACATCCCATGTAAGACTATGTCTGGGACATAGCTTTG
66 CTGGGACATGGCATTGGCACCACAGAAAACATCCCATGTAAGACAATGTCTGGGACATAGCGTTG
19840365 GCA
131 GCA
19840368 TGTATTATCA
Statistics
Matches: 113, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
149 36 0.32
150 41 0.36
151 5 0.04
155 1 0.01
156 30 0.27
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (152 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCATCTAGATTAGGAGAACTCCCATGTAAGACCATAT
CTGGGACATGGCATTGGCACCACAGAAAACATCCCATGTAAGACAATGTCTGGGACATAGCGTTG
GCACTGAGATGAGAGGTCCCCC
Found at i:19840584 original size:12 final size:12
Alignment explanation
Indices: 19840567--19840605 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
19840557 ATGAGTTAGT
19840567 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
19840579 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
19840591 TAAGTGAGTAAG
1 TAAGTAAGCAAG
19840603 TAA
1 TAA
19840606 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:19847457 original size:19 final size:21
Alignment explanation
Indices: 19847420--19847463 Score: 74
Period size: 19 Copynumber: 2.2 Consensus size: 21
19847410 CCTGATAAAA
19847420 GGTATCGATATATTTTTTATG
1 GGTATCGATATATTTTTTATG
19847441 GGTATCGATA-A-TTTTTATG
1 GGTATCGATATATTTTTTATG
19847460 GGTA
1 GGTA
19847464 CCAATACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 12 0.52
20 1 0.04
21 10 0.43
ACGTcount: A:0.25, C:0.05, G:0.23, T:0.48
Consensus pattern (21 bp):
GGTATCGATATATTTTTTATG
Found at i:19847474 original size:19 final size:19
Alignment explanation
Indices: 19847433--19847475 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
19847423 ATCGATATAT
* *
19847433 TTTTTATGGGTATCGATAA
1 TTTTTATGGGTACCAATAA
*
19847452 TTTTTATGGGTACCAATAC
1 TTTTTATGGGTACCAATAA
19847471 TTTTT
1 TTTTT
19847476 GTTAATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.09, G:0.16, T:0.51
Consensus pattern (19 bp):
TTTTTATGGGTACCAATAA
Found at i:19852826 original size:20 final size:20
Alignment explanation
Indices: 19852801--19852840 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
19852791 AAGATATTAT
19852801 TTTACTATCTAAATTAATAA
1 TTTACTATCTAAATTAATAA
19852821 TTTACTATCTAAATTAATAA
1 TTTACTATCTAAATTAATAA
19852841 ATTGAATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTACTATCTAAATTAATAA
Found at i:19863458 original size:53 final size:53
Alignment explanation
Indices: 19863345--19863493 Score: 183
Period size: 53 Copynumber: 2.8 Consensus size: 53
19863335 TTTTCGTATG
* * * * *
19863345 ATGCGATAACCCACCAGTTACGGTCTTACACTATATGATCTTCTTCCCATATG
1 ATGCCATAACCCACCAGTTACGGTCTTACACGATATGGTCTTCTTACCATATA
* * * *
19863398 ATTCCATATA-TCACCAATTACGGTCTTACACGATATGGTCTTCTTACTATATA
1 ATGCCATA-ACCCACCAGTTACGGTCTTACACGATATGGTCTTCTTACCATATA
* *
19863451 ATGCCATAACCCACCAGTTATGGTTTTACACGATATGGTCTTC
1 ATGCCATAACCCACCAGTTACGGTCTTACACGATATGGTCTTC
19863494 AATCCCATGG
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
52 1 0.01
53 78 0.98
54 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.34
Consensus pattern (53 bp):
ATGCCATAACCCACCAGTTACGGTCTTACACGATATGGTCTTCTTACCATATA
Found at i:19878222 original size:21 final size:20
Alignment explanation
Indices: 19878197--19878236 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
19878187 AATTCTAGTG
19878197 GTATATCCACATATTTTGGTA
1 GTATATCCACA-ATTTTGGTA
**
19878218 GTATATGTACAATTTTGGT
1 GTATATCCACAATTTTGGT
19878237 GGCTTGTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.45
Consensus pattern (20 bp):
GTATATCCACAATTTTGGTA
Found at i:19884394 original size:25 final size:25
Alignment explanation
Indices: 19884364--19884428 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
19884354 CCAATACTCT
19884364 GCTCGCATGAGCTTCCAGTTATTCA
1 GCTCGCATGAGCTTCCAGTTATTCA
* * * *
19884389 GTTCGCCTGAGCTTCCCGTTATTTA
1 GCTCGCATGAGCTTCCAGTTATTCA
*
19884414 GCTCACA-GAGCTTCC
1 GCTCGCATGAGCTTCC
19884429 CATTTACAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
24 8 0.24
25 25 0.76
ACGTcount: A:0.17, C:0.31, G:0.20, T:0.32
Consensus pattern (25 bp):
GCTCGCATGAGCTTCCAGTTATTCA
Found at i:19895350 original size:22 final size:23
Alignment explanation
Indices: 19895273--19895370 Score: 126
Period size: 23 Copynumber: 4.3 Consensus size: 23
19895263 CTAGCCACTT
*
19895273 AGGCATCATAAAATACGCCACAA
1 AGGCATCACAAAATACGCCACAA
*
19895296 AGGCATCACAAAATATGCCACAA
1 AGGCATCACAAAATACGCCACAA
* * *
19895319 AGACATCACAGAATACACCAC-A
1 AGGCATCACAAAATACGCCACAA
*
19895341 AGGCATCACAGAATACGCCACAA
1 AGGCATCACAAAATACGCCACAA
*
19895364 AGACATC
1 AGGCATC
19895371 GCAGAGTACT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
22 20 0.31
23 45 0.69
ACGTcount: A:0.47, C:0.29, G:0.13, T:0.11
Consensus pattern (23 bp):
AGGCATCACAAAATACGCCACAA
Found at i:19895361 original size:45 final size:46
Alignment explanation
Indices: 19895284--19895375 Score: 141
Period size: 45 Copynumber: 2.0 Consensus size: 46
19895274 GGCATCATAA
* *
19895284 AATACGCCACAAAGGCATCACAAAATATGCCACAAAGACATCACAG
1 AATACACCACAAAGGCATCACAAAATACGCCACAAAGACATCACAG
* *
19895330 AATACACCAC-AAGGCATCACAGAATACGCCACAAAGACATCGCAG
1 AATACACCACAAAGGCATCACAAAATACGCCACAAAGACATCACAG
19895375 A
1 A
19895376 GTACTAGCCA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 33 0.79
46 9 0.21
ACGTcount: A:0.47, C:0.29, G:0.14, T:0.10
Consensus pattern (46 bp):
AATACACCACAAAGGCATCACAAAATACGCCACAAAGACATCACAG
Found at i:19907787 original size:29 final size:29
Alignment explanation
Indices: 19907755--19907890 Score: 96
Period size: 29 Copynumber: 4.7 Consensus size: 29
19907745 GGTTGCCACC
19907755 ATCCCTTTTCATAATTGATGGCCGAACCT
1 ATCCCTTTTCATAATTGATGGCCGAACCT
** ** *
19907784 ATCCCTTTTCATAATCCATAACCGAAGCT
1 ATCCCTTTTCATAATTGATGGCCGAACCT
* * * *
19907813 ATCCCTTTTTAT-TTTCGATGGTCGTCACCT
1 ATCCCTTTTCATAATT-GATGGCCG-AACCT
** * * * *
19907843 -TCTTTTTTCTTAATTGATAGCCAAAGCT
1 ATCCCTTTTCATAATTGATGGCCGAACCT
*
19907871 ATCCCTTTTCATAATCGATG
1 ATCCCTTTTCATAATTGATG
19907891 ATCACCGATA
Statistics
Matches: 74, Mismatches: 29, Indels: 8
0.67 0.26 0.07
Matches are distributed among these distances:
28 4 0.05
29 65 0.88
30 5 0.07
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.40
Consensus pattern (29 bp):
ATCCCTTTTCATAATTGATGGCCGAACCT
Found at i:19907889 original size:58 final size:58
Alignment explanation
Indices: 19907755--19907890 Score: 139
Period size: 58 Copynumber: 2.3 Consensus size: 58
19907745 GGTTGCCACC
* *
19907755 ATCCCTTTTCATAATTGATGGCCGAACCTATCCCTTTTCATAATCCATAACCGAAGCT
1 ATCCCTTTTCATAATCGATGGCCGAACCTATCCCTTTTCATAATCCATAACCAAAGCT
* ** * * ** * ** *
19907813 ATCCCTTTTTATTTTCGATGGTCGTCACCT-TCTTTTTTCTTAATTGATAGCCAAAGCT
1 ATCCCTTTTCATAATCGATGGCCG-AACCTATCCCTTTTCATAATCCATAACCAAAGCT
19907871 ATCCCTTTTCATAATCGATG
1 ATCCCTTTTCATAATCGATG
19907891 ATCACCGATA
Statistics
Matches: 61, Mismatches: 16, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
58 57 0.93
59 4 0.07
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.40
Consensus pattern (58 bp):
ATCCCTTTTCATAATCGATGGCCGAACCTATCCCTTTTCATAATCCATAACCAAAGCT
Found at i:19910290 original size:30 final size:30
Alignment explanation
Indices: 19910219--19910291 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
19910209 CTACAAGGGT
*
19910219 CACACGGCCATGTGACTCACATGGCTAAGA
1 CACACGGCCGTGTGACTCACATGGCTAAGA
19910249 CACACGGCCGTGTGACTCACATGGCTAAGA
1 CACACGGCCGTGTGACTCACATGGCTAAGA
*
19910279 CACACGCCCGTGT
1 CACACGGCCGTGT
19910292 CTCAGGTTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.26, C:0.33, G:0.25, T:0.16
Consensus pattern (30 bp):
CACACGGCCGTGTGACTCACATGGCTAAGA
Found at i:19912289 original size:87 final size:88
Alignment explanation
Indices: 19912115--19912336 Score: 283
Period size: 87 Copynumber: 2.5 Consensus size: 88
19912105 TCATAACCGC
* *
19912115 CCCTTTTCAT-ATTCGATGGTCGAAAAC-ATCCCTTTTCATTAATCGATGGTCGTCACCATCCCA
1 CCCTTTTCATAATT-GATAGTCG-AAACTATCCCTTTTCATTAATCGATGGTCGTCACCATACCA
* *
19912178 TTTCATAGTTGATGGTTGTTACCAT
64 TTTCATAGTTGATGGTCGTCACCAT
* * * **
19912203 CCCTTTTCATAATTGATAGTCGAATCTATCCCTCTTCATT-TTCGATGGTCGTCACCATACGTTT
1 CCCTTTTCATAATTGATAGTCGAAACTATCCCTTTTCATTAATCGATGGTCGTCACCATACCATT
19912267 TCATAGTTGATGGTCGTCACCAT
66 TCATAGTTGATGGTCGTCACCAT
* *
19912290 CCATTTTCATAATTGATAG-CTGAAGCTATCCCTTTTCA-TAATCGATG
1 CCCTTTTCATAATTGATAGTC-GAAACTATCCCTTTTCATTAATCGATG
19912337 ATCATCGAAA
Statistics
Matches: 117, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
86 2 0.02
87 83 0.71
88 29 0.25
89 3 0.03
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.38
Consensus pattern (88 bp):
CCCTTTTCATAATTGATAGTCGAAACTATCCCTTTTCATTAATCGATGGTCGTCACCATACCATT
TCATAGTTGATGGTCGTCACCAT
Found at i:19912305 original size:29 final size:29
Alignment explanation
Indices: 19912115--19912306 Score: 174
Period size: 29 Copynumber: 6.6 Consensus size: 29
19912105 TCATAACCGC
** *
19912115 CCCTTTTCAT-ATTCGATGGTCGAAAACAT
1 CCCTTTTCATAATT-GATGGTCGTCACCAT
*
19912144 CCCTTTTCATTAATCGATGGTCGTCACCAT
1 CCCTTTTCA-TAATTGATGGTCGTCACCAT
* * * *
19912174 CCCATTTCATAGTTGATGGTTGTTACCAT
1 CCCTTTTCATAATTGATGGTCGTCACCAT
* * *
19912203 CCCTTTTCATAATTGATAGTCG-AATCTAT
1 CCCTTTTCATAATTGATGGTCGTCA-CCAT
* *
19912232 CCCTCTTCAT-TTTCGATGGTCGTCACCAT
1 CCCTTTTCATAATT-GATGGTCGTCACCAT
* * *
19912261 ACGTTTTCATAGTTGATGGTCGTCACCAT
1 CCCTTTTCATAATTGATGGTCGTCACCAT
*
19912290 CCATTTTCATAATTGAT
1 CCCTTTTCATAATTGAT
19912307 AGCTGAAGCT
Statistics
Matches: 130, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
28 3 0.02
29 101 0.78
30 24 0.18
31 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (29 bp):
CCCTTTTCATAATTGATGGTCGTCACCAT
Found at i:19914268 original size:35 final size:35
Alignment explanation
Indices: 19914219--19914571 Score: 214
Period size: 35 Copynumber: 9.8 Consensus size: 35
19914209 CCAACATTTA
* * * *
19914219 AAAAAGGTTTGGATAAACCCGTTTGAGACAACCTT
1 AAAAAGGTTGGGATAGACCCGTCTAAGACAACCTT
* *
19914254 AAAAAGGTTGGGATAGACCTGTCTAAGACAATCTT
1 AAAAAGGTTGGGATAGACCCGTCTAAGACAACCTT
* * *
19914289 AATAAA-GTTGGAATAGACCTTGTCTAAGGCAACCTTT
1 AA-AAAGGTTGGGATAGACC-CGTCTAAGACAACC-TT
* *
19914326 AAAAACGATTGGGATAGACCCGCCTAA-AGCAACCTT
1 AAAAA-GGTTGGGATAGACCCGTCTAAGA-CAACCTT
* * * **
19914362 AGAAAGATTGGGATAAACCTTATCTAA-AGCAACCTTT
1 AAAAAGGTTGGGATAGACC-CGTCTAAGA-CAACC-TT
* *
19914399 AAAAAAGGTTAGGG-TAGACCTTGTCTAA-AGCAGCCTT
1 -AAAAAGGTT-GGGATAGACC-CGTCTAAGA-CAACCTT
** * * *
19914436 AAAAAGGTTAAGATAGACACATCTAAGGCAACCTT
1 AAAAAGGTTGGGATAGACCCGTCTAAGACAACCTT
* *
19914471 AAAAAGGTTGAGATAGACCTTGTCTAA-AGCAACCTTT
1 AAAAAGGTTGGGATAGACC-CGTCTAAGA-CAACC-TT
** ** * *
19914508 AAAAAAGGTTAAGATAGACTTGCCTAAAACAACCTT
1 -AAAAAGGTTGGGATAGACCCGTCTAAGACAACCTT
* **
19914544 AAAAATGTTGGGATAGACAGGTCTAAGA
1 AAAAAGGTTGGGATAGACCCGTCTAAGA
19914572 AAATTTTTTC
Statistics
Matches: 255, Mismatches: 46, Indels: 34
0.76 0.14 0.10
Matches are distributed among these distances:
35 106 0.42
36 61 0.24
37 31 0.12
38 54 0.21
39 3 0.01
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (35 bp):
AAAAAGGTTGGGATAGACCCGTCTAAGACAACCTT
Found at i:19914467 original size:109 final size:109
Alignment explanation
Indices: 19914301--19914562 Score: 328
Period size: 109 Copynumber: 2.4 Consensus size: 109
19914291 TAAAGTTGGA
* * * * *
19914301 ATAGACCTTGTCTAAGGCAACCTTTAAAAACGATTGGGATAGACCCGCCTAAAGCAACCTTAGAA
1 ATAGACCTTGTCTAAAGCAACC-TTAAAAA-GGTTGGGATAGACACACCTAAAGCAACCTTAAAA
* *
19914366 AGATTGGGATAAACCTTATCTAAAGCAACCTTTAAAAAAGGTTAGG
64 AGATTGAGATAAACCTTATCTAAAGCAACCTTTAAAAAAGGTTAAG
* * ** * *
19914412 GTAGACCTTGTCTAAAGCAGCCTTAAAAAGGTTAAGATAGACACATCTAAGGCAACCTTAAAAAG
1 ATAGACCTTGTCTAAAGCAACCTTAAAAAGGTTGGGATAGACACACCTAAAGCAACCTTAAAAAG
* * *
19914477 GTTGAGATAGACCTTGTCTAAAGCAACCTTTAAAAAAGGTTAAG
66 ATTGAGATAAACCTTATCTAAAGCAACCTTTAAAAAAGGTTAAG
* * *
19914521 ATAGA-CTTGCCTAAAACAACCTTAAAAATGTTGGGATAGACA
1 ATAGACCTTGTCTAAAGCAACCTTAAAAAGGTTGGGATAGACA
19914563 GGTCTAAGAA
Statistics
Matches: 128, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
108 31 0.24
109 71 0.55
110 7 0.05
111 19 0.15
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.24
Consensus pattern (109 bp):
ATAGACCTTGTCTAAAGCAACCTTAAAAAGGTTGGGATAGACACACCTAAAGCAACCTTAAAAAG
ATTGAGATAAACCTTATCTAAAGCAACCTTTAAAAAAGGTTAAG
Found at i:19914519 original size:73 final size:71
Alignment explanation
Indices: 19914247--19914561 Score: 250
Period size: 73 Copynumber: 4.4 Consensus size: 71
19914237 CCGTTTGAGA
* * *
19914247 CAACC-TTAAAAAGGTTGGGATAGACCTGTCT-AAGACAATCTTAATAAA-GTT-GGAATAGACC
1 CAACCTTTAAAAAGGTTGAGATAGACCTGTCTAAAG-CAACCTTAA-AAAGGTTAAG-ATAGACC
*
19914308 TTGTCTAAGG
63 -TATCTAAGG
* * * * * * ** *
19914318 CAACCTTTAAAAACGATTGGGATAGACCCGCCTAAAGCAACCTTAGAAAGATTGGGATAAACCTT
1 CAACCTTTAAAAA-GGTTGAGATAGACCTGTCTAAAGCAACCTTAAAAAGGTTAAGATAGACC-T
*
19914383 ATCTAAAG
64 ATCTAAGG
* *
19914391 CAACCTTTAAAAAAGGTT-AGGGTAGACCTTGTCTAAAGCAGCCTTAAAAAGGTTAAGATAGACA
1 CAACCTTT-AAAAAGGTTGA-GATAGACC-TGTCTAAAGCAACCTTAAAAAGGTTAAGATAGAC-
19914455 C-ATCTAAGG
62 CTATCTAAGG
*
19914464 CAACC-TTAAAAAGGTTGAGATAGACCTTGTCTAAAGCAACCTTTAAAAAAGGTTAAGATAGACT
1 CAACCTTTAAAAAGGTTGAGATAGACC-TGTCTAAAGCAACC-TT-AAAAAGGTTAAGATAGACC
** **
19914528 TGCCTAAAA
63 TATCTAAGG
* *
19914537 CAACC-TTAAAAATGTTGGGATAGAC
1 CAACCTTTAAAAAGGTTGAGATAGAC
19914562 AGGTCTAAGA
Statistics
Matches: 201, Mismatches: 30, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
71 35 0.17
72 15 0.07
73 114 0.57
74 36 0.18
75 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (71 bp):
CAACCTTTAAAAAGGTTGAGATAGACCTGTCTAAAGCAACCTTAAAAAGGTTAAGATAGACCTAT
CTAAGG
Found at i:19916784 original size:28 final size:28
Alignment explanation
Indices: 19916747--19916801 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
19916737 GGTTTATGTA
19916747 CCACTTTTTTATTTAAACCTAAAATTAC
1 CCACTTTTTTATTTAAACCTAAAATTAC
19916775 CCACTTTTTTATTTAAACCTAAAATTA
1 CCACTTTTTTATTTAAACCTAAAATTA
19916802 AGCTAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.20, G:0.00, T:0.44
Consensus pattern (28 bp):
CCACTTTTTTATTTAAACCTAAAATTAC
Found at i:19918957 original size:51 final size:51
Alignment explanation
Indices: 19918757--19918951 Score: 225
Period size: 51 Copynumber: 3.8 Consensus size: 51
19918747 TGAAAGTGAA
** * * *
19918757 AGTGATGGTCATGTTTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAT
* * *
19918807 A-TAATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAT
* * * * * *
19918858 AGCT-TTGATCACGTATGTAGTAATATGTGCAGGCTACTATGTGTATCGGAT
1 AG-TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAT
19918909 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
19918952 AATCGGTATC
Statistics
Matches: 119, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
49 3 0.03
50 39 0.33
51 75 0.63
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (51 bp):
AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAT
Found at i:19919044 original size:46 final size:44
Alignment explanation
Indices: 19918958--19919045 Score: 115
Period size: 46 Copynumber: 2.0 Consensus size: 44
19918948 TGTGAATCGG
* *
19918958 TATCATTAATTATAAGGTGGTTGCTATGTGTTGATCCCACCGGA
1 TATCATTAATTAAAAGGTGGTTGCTATGTGCTGATCCCACCGGA
*
19919002 TATCATTAATTACAAAGGGTGGTTGCTGTGTGCTGAAT-CCACCG
1 TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTG-ATCCCACCG
19919046 TGTATCTGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 12 0.32
45 2 0.05
46 22 0.58
47 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (44 bp):
TATCATTAATTAAAAGGTGGTTGCTATGTGCTGATCCCACCGGA
Found at i:19919196 original size:16 final size:16
Alignment explanation
Indices: 19919175--19919206 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
19919165 TGATTGAAAG
*
19919175 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
19919191 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
19919207 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:19921664 original size:140 final size:139
Alignment explanation
Indices: 19921469--19921760 Score: 413
Period size: 140 Copynumber: 2.1 Consensus size: 139
19921459 GGAAAGTGAA
* * * *
19921469 ACCCAAAAGTGTCGGCATAGTGTTGGACAAAGTCGACTCTTATTTAAGTGTTGCCTTAGGCATGC
1 ACCCAAAAGTGTCGGCATAGTGTTGGACAAAGCCGACCCTTATTTAAGGGCTGCCTTAGGCATGC
* * * *
19921534 ATATCCCAACCCTTATACAAAAAGTTGGCGAAAGTGTATGTCAGCAAGTCTATCCCAATACTTAG
66 ATATCCCAACCCTTAT-CAAAAAGTTGGCCAAAGAGTATGTCAGCAAGTCTATCCCAACACTTAA
19921599 GAAAGTGTCG
130 GAAAGTGTCG
*
19921609 ACCCAAAAGTGTCGGCATGGTGTTGGACAAAGCCGACCCTTATTTAAGGGCTGCCTTAGGCATGC
1 ACCCAAAAGTGTCGGCATAGTGTTGGACAAAGCCGACCCTTATTTAAGGGCTGCCTTAGGCATGC
* * * * ** * *
19921674 ATATCCCGACTCTTATTAAAGAGTTGGCCAAAGAGTATGTTGGCAAGTCTATCCCGACAGTTAAG
66 ATATCCCAACCCTTATCAAAAAGTTGGCCAAAGAGTATGTCAGCAAGTCTATCCCAACACTTAAG
19921739 AAAGTGTCG
131 AAAGTGTCG
*
19921748 GCCCAAAAGTGTC
1 ACCCAAAAGTGTC
19921761 ATCATAAACC
Statistics
Matches: 134, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
139 60 0.45
140 74 0.55
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (139 bp):
ACCCAAAAGTGTCGGCATAGTGTTGGACAAAGCCGACCCTTATTTAAGGGCTGCCTTAGGCATGC
ATATCCCAACCCTTATCAAAAAGTTGGCCAAAGAGTATGTCAGCAAGTCTATCCCAACACTTAAG
AAAGTGTCG
Found at i:19925096 original size:35 final size:35
Alignment explanation
Indices: 19925015--19925104 Score: 90
Period size: 35 Copynumber: 2.6 Consensus size: 35
19925005 AACACAGTGG
* * * * *
19925015 CATGCTTAAAATGTGATTCAGAATCAGAATAATAG
1 CATGCTTAACATGCGAATCAGAATCAAAATAATAA
* * * *
19925050 CTTGCTCAACATGCGAATCATAATTAAAATAATAA
1 CATGCTTAACATGCGAATCAGAATCAAAATAATAA
*
19925085 CATGCTTAACATGCAAATCA
1 CATGCTTAACATGCGAATCA
19925105 AAGTATCAGT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (35 bp):
CATGCTTAACATGCGAATCAGAATCAAAATAATAA
Found at i:19934123 original size:34 final size:35
Alignment explanation
Indices: 19934080--19934153 Score: 96
Period size: 34 Copynumber: 2.1 Consensus size: 35
19934070 TATTTTGGAT
* *
19934080 CAGAGTATCATATTTTCATAA-ACATATATCAGAC
1 CAGAATATCATATTTTCAGAAGACATATATCAGAC
* *
19934114 CAGAATATCATGTTTTCAGAAGTACATATATCATAC
1 CAGAATATCATATTTTCAGAAG-ACATATATCAGAC
19934150 CAGA
1 CAGA
19934154 CCATAACAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 18 0.53
36 16 0.47
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.31
Consensus pattern (35 bp):
CAGAATATCATATTTTCAGAAGACATATATCAGAC
Found at i:19943706 original size:32 final size:31
Alignment explanation
Indices: 19943668--19943760 Score: 127
Period size: 32 Copynumber: 3.0 Consensus size: 31
19943658 AATCCAATAA
19943668 AGTATCGATGCCCATCGAATATGAAAATGGAT
1 AGTATCGA-GCCCATCGAATATGAAAATGGAT
19943700 AGTATCGACGCCCATCGAATATGAAAATGGAT
1 AGTATCGA-GCCCATCGAATATGAAAATGGAT
* * *
19943732 GGTTTCGA--CCATCGAATATGAAAAGGGAT
1 AGTATCGAGCCCATCGAATATGAAAATGGAT
19943761 GGTGACGACA
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
29 20 0.35
32 37 0.65
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AGTATCGAGCCCATCGAATATGAAAATGGAT
Found at i:19943753 original size:29 final size:29
Alignment explanation
Indices: 19943679--19943802 Score: 151
Period size: 29 Copynumber: 4.2 Consensus size: 29
19943669 GTATCGATGC
* *
19943679 CCATCGAATATGAAAATGGATAGTATCGA
1 CCATCGAATATGAAAATGGATGGTTTCGA
19943708 CGCCCATCGAATATGAAAATGGATGGTTTCGA
1 ---CCATCGAATATGAAAATGGATGGTTTCGA
* **
19943740 CCATCGAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAATGGATGGTTTCGA
* *
19943769 CAATCAAATATGAAAA-GGATGGTTTCGA
1 CCATCGAATATGAAAATGGATGGTTTCGA
19943797 CCATCG
1 CCATCG
19943803 TTTAGCACAC
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
28 14 0.17
29 40 0.49
32 27 0.33
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (29 bp):
CCATCGAATATGAAAATGGATGGTTTCGA
Found at i:19948316 original size:23 final size:24
Alignment explanation
Indices: 19948285--19948331 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
19948275 TGCATGTTTA
19948285 TTTCTTATTTTTAGTTTGTTTTTT
1 TTTCTTATTTTTAGTTTGTTTTTT
*
19948309 TTTC-TATTTTTATTTTGTTTTTT
1 TTTCTTATTTTTAGTTTGTTTTTT
19948332 GTTTAGTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.09, C:0.04, G:0.06, T:0.81
Consensus pattern (24 bp):
TTTCTTATTTTTAGTTTGTTTTTT
Found at i:19953390 original size:23 final size:23
Alignment explanation
Indices: 19953360--19953408 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
19953350 AAAGAAAAAG
19953360 AAAAAAAAAAGAAAGAGATGGTA
1 AAAAAAAAAAGAAAGAGATGGTA
19953383 AAAAAAAAAAGAAAGAGATGGTA
1 AAAAAAAAAAGAAAGAGATGGTA
19953406 AAA
1 AAA
19953409 CTAGGTGTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.08
Consensus pattern (23 bp):
AAAAAAAAAAGAAAGAGATGGTA
Found at i:19957685 original size:16 final size:15
Alignment explanation
Indices: 19957664--19957718 Score: 65
Period size: 16 Copynumber: 3.5 Consensus size: 15
19957654 GTTTGGTTCA
19957664 CTGTAATGAAATAGAG
1 CTGTAATG-AATAGAG
19957680 CTGTAATTGAATAGAG
1 CTGTAA-TGAATAGAG
* *
19957696 CTGTAATGGAATATAA
1 CTGTAAT-GAATAGAG
19957712 CTGTAAT
1 CTGTAAT
19957719 AGTAATTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 1 0.03
16 32 0.91
17 2 0.06
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (15 bp):
CTGTAATGAATAGAG
Found at i:19957759 original size:45 final size:44
Alignment explanation
Indices: 19957700--19957792 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
19957690 ATAGAGCTGT
*
19957700 AATGGAATATAACTGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-ATTC-ATGTGTTTGGTTGAATGG
*
19957745 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATGG
19957789 AATG
1 AATG
19957793 ATGTTGTAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.51
45 21 0.47
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.38
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATGG
Found at i:19957981 original size:56 final size:56
Alignment explanation
Indices: 19957906--19958023 Score: 130
Period size: 56 Copynumber: 2.1 Consensus size: 56
19957896 GATTATCAAT
* * * * *
19957906 ATAAATAATAAATACTTTAATCATATT-TTCACATAATTATTATTAAATATAATTTA
1 ATAAAAAATAAATAATTTAATAAAATTCTTAACATAATTATTATTAAATA-AATTTA
* * * *
19957962 ATAAAAAATATATAATTTAATAAAATTCTTAATATAATTATTCTTATATAAATTTA
1 ATAAAAAATAAATAATTTAATAAAATTCTTAACATAATTATTATTAAATAAATTTA
*
19958018 CTAAAA
1 ATAAAA
19958024 TCATAATATA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
56 33 0.65
57 18 0.35
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (56 bp):
ATAAAAAATAAATAATTTAATAAAATTCTTAACATAATTATTATTAAATAAATTTA
Found at i:19958139 original size:14 final size:14
Alignment explanation
Indices: 19958120--19958149 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
19958110 AATCACCCTA
19958120 AAAAGAAAAAAAAG
1 AAAAGAAAAAAAAG
19958134 AAAAGAAAAAAAAG
1 AAAAGAAAAAAAAG
19958148 AA
1 AA
19958150 TGTGTTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAAAG
Found at i:19965176 original size:13 final size:14
Alignment explanation
Indices: 19965151--19965183 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
19965141 CATTACCATG
19965151 TTTTATGATATAAA
1 TTTTATGATATAAA
19965165 TTTTAT-ATATAAA
1 TTTTATGATATAAA
*
19965178 GTTTAT
1 TTTTAT
19965184 TTTAATTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (14 bp):
TTTTATGATATAAA
Found at i:19968363 original size:30 final size:30
Alignment explanation
Indices: 19968343--19968494 Score: 153
Period size: 30 Copynumber: 5.1 Consensus size: 30
19968333 TCATAGCTCA
**
19968343 ATAGCCAAAGCTATCCCTTTTCATAGCTTG
1 ATAGCCAAAGCTATCCCTTTTCATAATTTG
** *
19968373 ATAGCTGAAGCTATCCCTTTTCATTATTTG
1 ATAGCCAAAGCTATCCCTTTTCATAATTTG
* *** *
19968403 ATGGTCGTCA-CCATCCCTTTTCATAATTTG
1 ATAG-CCAAAGCTATCCCTTTTCATAATTTG
* * **
19968433 ATAGTCAAAGCTACCCCTTTTCATAATTCA
1 ATAGCCAAAGCTATCCCTTTTCATAATTTG
*
19968463 ATAGCCAAAGCTATCCCTTTTCATTATTTG
1 ATAGCCAAAGCTATCCCTTTTCATAATTTG
19968493 AT
1 AT
19968495 GGTCGTCACC
Statistics
Matches: 95, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
29 1 0.01
30 92 0.97
31 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.38
Consensus pattern (30 bp):
ATAGCCAAAGCTATCCCTTTTCATAATTTG
Found at i:19968451 original size:90 final size:90
Alignment explanation
Indices: 19968343--19968524 Score: 269
Period size: 90 Copynumber: 2.0 Consensus size: 90
19968333 TCATAGCTCA
* * * **
19968343 ATAGCCAAAGCTATCCCTTTTCATAGCTT-GATAGCTGAAGCTATCCCTTTTCATTATTTGATGG
1 ATAGCCAAAGCTACCCCTTTTCATA-ATTCAATAGCCAAAGCTATCCCTTTTCATTATTTGATGG
19968407 TCGTCACCATCCCTTTT-CATAATTTG
65 TCGTCACCAT-CCTTTTACATAATTTG
*
19968433 ATAGTCAAAGCTACCCCTTTTCATAATTCAATAGCCAAAGCTATCCCTTTTCATTATTTGATGGT
1 ATAGCCAAAGCTACCCCTTTTCATAATTCAATAGCCAAAGCTATCCCTTTTCATTATTTGATGGT
*
19968498 CGTCACCATCCTTTTACATTATTTG
66 CGTCACCATCCTTTTACATAATTTG
19968523 AT
1 AT
19968525 GGTCGTCACC
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
89 8 0.10
90 75 0.90
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (90 bp):
ATAGCCAAAGCTACCCCTTTTCATAATTCAATAGCCAAAGCTATCCCTTTTCATTATTTGATGGT
CGTCACCATCCTTTTACATAATTTG
Found at i:19968479 original size:60 final size:60
Alignment explanation
Indices: 19968327--19968494 Score: 169
Period size: 60 Copynumber: 2.8 Consensus size: 60
19968317 GTTGTCCCAA
** ** * *
19968327 CCCTTTTCATAGCTCAATAGCCAAAGCTATCCCTTTTCATAGCTTGATAGCTGAAGCTAT
1 CCCTTTTCATAATTCAATAGCCAAAGCTATCCCTTTTCATAATTTGATAGCTAAAGCTAC
* ** * *** *
19968387 CCCTTTTCATTATTTGATGGTCGTCA-CCATCCCTTTTCATAATTTGATAG-TCAAAGCTAC
1 CCCTTTTCATAATTCAATAG-CCAAAGCTATCCCTTTTCATAATTTGATAGCT-AAAGCTAC
*
19968447 CCCTTTTCATAATTCAATAGCCAAAGCTATCCCTTTTCATTATTTGAT
1 CCCTTTTCATAATTCAATAGCCAAAGCTATCCCTTTTCATAATTTGAT
19968495 GGTCGTCACC
Statistics
Matches: 82, Mismatches: 23, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
59 3 0.04
60 77 0.94
61 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.38
Consensus pattern (60 bp):
CCCTTTTCATAATTCAATAGCCAAAGCTATCCCTTTTCATAATTTGATAGCTAAAGCTAC
Found at i:19968566 original size:29 final size:30
Alignment explanation
Indices: 19968385--19968583 Score: 172
Period size: 30 Copynumber: 6.7 Consensus size: 30
19968375 AGCTGAAGCT
19968385 ATCCCTTTTCATTATTTGATGGTCGTCACC
1 ATCCCTTTTCATTATTTGATGGTCGTCACC
* * ** *
19968415 ATCCCTTTTCATAATTTGATAGTC-AAAGCT
1 ATCCCTTTTCATTATTTGATGGTCGTCA-CC
* * ** * *** *
19968445 ACCCCTTTTCATAATTCAATAG-CCAAAGCT
1 ATCCCTTTTCATTATTTGATGGTCGTCA-CC
19968475 ATCCCTTTTCATTATTTGATGGTCGTCACC
1 ATCCCTTTTCATTATTTGATGGTCGTCACC
19968505 AT-CCTTTTACATTATTTGATGGTCGTCACC
1 ATCCCTTTT-CATTATTTGATGGTCGTCACC
* * *
19968535 ATCCCTTTTCATT-GTTGATGGTCATCATC
1 ATCCCTTTTCATTATTTGATGGTCGTCACC
* *
19968564 ATCCCTTTTTATAATTTGAT
1 ATCCCTTTTCATTATTTGAT
19968584 AGCCGATACG
Statistics
Matches: 140, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
29 32 0.23
30 100 0.71
31 8 0.06
ACGTcount: A:0.23, C:0.24, G:0.11, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATTATTTGATGGTCGTCACC
Found at i:19971287 original size:10 final size:10
Alignment explanation
Indices: 19971269--19971308 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
19971259 ATATTTATTC
19971269 TCCTTTTTTT
1 TCCTTTTTTT
19971279 T-CTTTTTTT
1 TCCTTTTTTT
*
19971288 TCCTTTTTTG
1 TCCTTTTTTT
*
19971298 TCCTTATTTT
1 TCCTTTTTTT
19971308 T
1 T
19971309 AATAGAAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.78
Consensus pattern (10 bp):
TCCTTTTTTT
Found at i:19971307 original size:19 final size:19
Alignment explanation
Indices: 19971263--19971307 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
19971253 TTTCATATAT
* * *
19971263 TTATTCTCCTTTTTTTTCT
1 TTATTTTCCTTTTTTGTCC
*
19971282 TTTTTTTCCTTTTTTGTCC
1 TTATTTTCCTTTTTTGTCC
19971301 TTATTTT
1 TTATTTT
19971308 TAATAGAAAC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.76
Consensus pattern (19 bp):
TTATTTTCCTTTTTTGTCC
Found at i:19973445 original size:45 final size:45
Alignment explanation
Indices: 19973394--19973481 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
19973384 TCGAGGAGAT
**
19973394 TGATTCATCGTACCCCATGTGAGGTTCATTTTTCAATAAAAATAC
1 TGATTCATCGTACCCCATGTGAGGTTCATCCTTCAATAAAAATAC
19973439 TGATTCATCGTACCCCATGTGAGGTTCATCCTTCAATAAAAAT
1 TGATTCATCGTACCCCATGTGAGGTTCATCCTTCAATAAAAAT
19973482 CCTTGTTCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.34
Consensus pattern (45 bp):
TGATTCATCGTACCCCATGTGAGGTTCATCCTTCAATAAAAATAC
Found at i:19985290 original size:20 final size:22
Alignment explanation
Indices: 19985252--19985291 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
19985242 ATGCAATATT
19985252 TAAAATGCTAACTAAAATGTCC
1 TAAAATGCTAACTAAAATGTCC
19985274 TAAAATGC-AAC-AAAATGT
1 TAAAATGCTAACTAAAATGT
19985292 ATTCAAGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
22 8 0.44
ACGTcount: A:0.50, C:0.15, G:0.10, T:0.25
Consensus pattern (22 bp):
TAAAATGCTAACTAAAATGTCC
Found at i:19986601 original size:22 final size:21
Alignment explanation
Indices: 19986559--19986607 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
19986549 AAAATGATTG
* *
19986559 TAACAAATATATGTTTCATAA
1 TAACAAATATATATATCATAA
19986580 TTAACAAATATATAATAT-ATAA
1 -TAACAAATATAT-ATATCATAA
19986602 TAACAA
1 TAACAA
19986608 GTTAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 6 0.25
22 16 0.67
23 2 0.08
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (21 bp):
TAACAAATATATATATCATAA
Found at i:19998427 original size:74 final size:74
Alignment explanation
Indices: 19998206--19998439 Score: 244
Period size: 74 Copynumber: 3.2 Consensus size: 74
19998196 TTGACGGAGG
* *
19998206 TTGCGCCCAGCGCTAGTCAAATAAACCGATGAATAATTAGTGAGCCCAGCTCTAGTTGGATAAAC
1 TTGCGCCCAGCGCTAGTCAGATAAACCAATGAATAATTAGTGAGCCCAGCTCTAGTTGGATAAAC
*
19998271 CAACAATAT
66 CAACGATAT
* * * * * * * * ***
19998280 TTGCACCCAGCACTAGTCGGATAAACCAACG---AA-T-GTGTGTCCATCACTAGTCAAATAAAC
1 TTGCGCCCAGCGCTAGTCAGATAAACCAATGAATAATTAGTGAGCCCAGCTCTAGTTGGATAAAC
** * *
19998340 TGACGAAAG
66 CAACGATAT
* *
19998349 TTGCGCCCAGTGCTAGTCAGATAAACCAATGAATAATTAATGAGCCCAGCTCTAGTTGGATAAAC
1 TTGCGCCCAGCGCTAGTCAGATAAACCAATGAATAATTAGTGAGCCCAGCTCTAGTTGGATAAAC
19998414 CAACGATAT
66 CAACGATAT
*
19998423 TTGCGCCCAGTGCTAGT
1 TTGCGCCCAGCGCTAGT
19998440 TGAACGAATC
Statistics
Matches: 120, Mismatches: 35, Indels: 10
0.73 0.21 0.06
Matches are distributed among these distances:
69 49 0.41
70 1 0.01
71 2 0.02
72 2 0.02
73 1 0.01
74 65 0.54
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (74 bp):
TTGCGCCCAGCGCTAGTCAGATAAACCAATGAATAATTAGTGAGCCCAGCTCTAGTTGGATAAAC
CAACGATAT
Found at i:19998439 original size:143 final size:143
Alignment explanation
Indices: 19998136--19998439 Score: 446
Period size: 143 Copynumber: 2.1 Consensus size: 143
19998126 CGCGAAAGAG
* * * * *
19998136 TTTGCACCCACTGCTAGTCGGATATACCGACAAATGTGTGCCCAACACTAGTCAGATAAATTGAC
1 TTTGCACCCAGTGCTAGTCGGATAAACCAACAAATGTGTGCCCAACACTAGTCAAATAAACTGAC
* * * *
19998201 GGAGGTTGCGCCCAGCGCTAGTCAAATAAACCGATGAATAATTAGTGAGCCCAGCTCTAGTTGGA
66 GAAAGTTGCGCCCAGCGCTAGTCAAATAAACCAATGAATAATTAATGAGCCCAGCTCTAGTTGGA
19998266 TAAACCAACAATA
131 TAAACCAACAATA
** * * *
19998279 TTTGCACCCAGCACTAGTCGGATAAACCAACGAATGTGTGTCCATCACTAGTCAAATAAACTGAC
1 TTTGCACCCAGTGCTAGTCGGATAAACCAACAAATGTGTGCCCAACACTAGTCAAATAAACTGAC
* *
19998344 GAAAGTTGCGCCCAGTGCTAGTCAGATAAACCAATGAATAATTAATGAGCCCAGCTCTAGTTGGA
66 GAAAGTTGCGCCCAGCGCTAGTCAAATAAACCAATGAATAATTAATGAGCCCAGCTCTAGTTGGA
*
19998409 TAAACCAACGATA
131 TAAACCAACAATA
*
19998422 TTTGCGCCCAGTGCTAGT
1 TTTGCACCCAGTGCTAGT
19998440 TGAACGAATC
Statistics
Matches: 141, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
143 141 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (143 bp):
TTTGCACCCAGTGCTAGTCGGATAAACCAACAAATGTGTGCCCAACACTAGTCAAATAAACTGAC
GAAAGTTGCGCCCAGCGCTAGTCAAATAAACCAATGAATAATTAATGAGCCCAGCTCTAGTTGGA
TAAACCAACAATA
Found at i:19998441 original size:35 final size:34
Alignment explanation
Indices: 19998249--19998439 Score: 116
Period size: 35 Copynumber: 5.4 Consensus size: 34
19998239 TAATTAGTGA
* *
19998249 GCCCAGCTCTAGTTGGATAAACCAACAATATTTGC
1 GCCCAG-TCTAGTCGGATAAACCAACGATATTTGC
* * * *
19998284 ACCCAGCACTAGTCGGATAAACCAACGA-ATGTGT
1 GCCCAG-TCTAGTCGGATAAACCAACGATATTTGC
* ** ** * *
19998318 GTCCA-TCACTAGTCAAATAAACTGACGAAAGTTGC
1 GCCCAGT--CTAGTCGGATAAACCAACGATATTTGC
* * *
19998353 GCCCAGTGCTAGTCAGATAAACCAATGAATAATTAATGA
1 GCCCAGT-CTAGTCGGATAAACCAACG-AT-ATT--TGC
*
19998392 GCCCAGCTCTAGTTGGATAAACCAACGATATTTGC
1 GCCCAG-TCTAGTCGGATAAACCAACGATATTTGC
19998427 GCCCAGTGCTAGT
1 GCCCAGT-CTAGT
19998440 TGAACGAATC
Statistics
Matches: 117, Mismatches: 29, Indels: 20
0.70 0.17 0.12
Matches are distributed among these distances:
34 24 0.21
35 59 0.50
36 2 0.02
37 5 0.04
38 2 0.02
39 24 0.21
40 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (34 bp):
GCCCAGTCTAGTCGGATAAACCAACGATATTTGC
Found at i:19998636 original size:36 final size:35
Alignment explanation
Indices: 19998582--19998650 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 35
19998572 CTATAATGTC
19998582 ATATTCCATAAACCTCCATTCAATTGAATTAACTT
1 ATATTCCATAAACCTCCATTCAATTGAATTAACTT
* *
19998617 ATATCTCCATAAACTTCCATTCAATTTAATTAAC
1 ATAT-TCCATAAACCTCCATTCAATTGAATTAAC
19998651 AATTACTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 4 0.13
36 27 0.87
ACGTcount: A:0.38, C:0.23, G:0.01, T:0.38
Consensus pattern (35 bp):
ATATTCCATAAACCTCCATTCAATTGAATTAACTT
Found at i:20003487 original size:13 final size:13
Alignment explanation
Indices: 20003469--20003493 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20003459 TCCAAACATT
20003469 GAAATTTTCAAAC
1 GAAATTTTCAAAC
20003482 GAAATTTTCAAA
1 GAAATTTTCAAA
20003494 AAATCATTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (13 bp):
GAAATTTTCAAAC
Found at i:20006247 original size:20 final size:20
Alignment explanation
Indices: 20006222--20006262 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
20006212 GCGCTTGTGG
*
20006222 GTTTGCACTTCGATGCCTCT
1 GTTTGCACTTCAATGCCTCT
20006242 GTTTGCACTTCAATGCCTCT
1 GTTTGCACTTCAATGCCTCT
20006262 G
1 G
20006263 ATCACAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.12, C:0.29, G:0.20, T:0.39
Consensus pattern (20 bp):
GTTTGCACTTCAATGCCTCT
Found at i:20009845 original size:31 final size:31
Alignment explanation
Indices: 20009810--20009874 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
20009800 CATTGATGAG
*
20009810 TTAAATGATGTGTTTTTACATAGAAATCTAC
1 TTAAATGATGTGTTTATACATAGAAATCTAC
*
20009841 TTAAATGATGTGTTTATACATGGAAATCTAC
1 TTAAATGATGTGTTTATACATAGAAATCTAC
20009872 TTA
1 TTA
20009875 TCTTATGGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (31 bp):
TTAAATGATGTGTTTATACATAGAAATCTAC
Found at i:20012325 original size:46 final size:46
Alignment explanation
Indices: 20012272--20012457 Score: 309
Period size: 46 Copynumber: 4.0 Consensus size: 46
20012262 CCATGGAAAA
*
20012272 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAGCCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
*
20012318 TTGTGAAAAGTAGGTATGGTGTTTCAGTAAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
* * *
20012364 TTGTTAAAAGTAGGTATGGTGTTTTAGTGAAGAAAACTATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
* *
20012410 TTGTGAAAAGTAGGTATGGTATTTCAGTGAAGGAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
20012456 TT
1 TT
20012458 ATAGCATTGT
Statistics
Matches: 129, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 129 1.00
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
Found at i:20016760 original size:60 final size:60
Alignment explanation
Indices: 20016688--20016810 Score: 237
Period size: 60 Copynumber: 2.0 Consensus size: 60
20016678 AACTATCACT
*
20016688 TTGATAAAGAAAATATATATGTATCAAACTAAGAAAAGCTATTTAAGTTCTGATATTAAA
1 TTGATAAAGAAAATATATATGTATCAAACTAAGAAAACCTATTTAAGTTCTGATATTAAA
20016748 TTGATAAAGAAAATATATATGTATCAAACTAAGAAAACCTATTTAAGTTCTGATATTAAA
1 TTGATAAAGAAAATATATATGTATCAAACTAAGAAAACCTATTTAAGTTCTGATATTAAA
20016808 TTG
1 TTG
20016811 TATATTACTA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.34
Consensus pattern (60 bp):
TTGATAAAGAAAATATATATGTATCAAACTAAGAAAACCTATTTAAGTTCTGATATTAAA
Found at i:20022082 original size:6 final size:6
Alignment explanation
Indices: 20022071--20022103 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
20022061 TGGTGCTTTT
20022071 AAATTA AAATTA AAATTA AAATTA AAATTA AAA
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAA
20022104 GAAAGGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
AAATTA
Found at i:20022445 original size:20 final size:21
Alignment explanation
Indices: 20022400--20022453 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
20022390 AATAACTTAT
20022400 CCTTTTGAAAAACGTAAGTCA
1 CCTTTTGAAAAACGTAAGTCA
20022421 CCTTTTGAAAAACGTAAGTCA
1 CCTTTTGAAAAACGTAAGTCA
20022442 -CTTTTCGAAAAA
1 CCTTTT-GAAAAA
20022454 GAGTTCATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 5 0.16
21 27 0.84
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.30
Consensus pattern (21 bp):
CCTTTTGAAAAACGTAAGTCA
Found at i:20022551 original size:9 final size:9
Alignment explanation
Indices: 20022537--20022565 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
20022527 TAATTTTATT
20022537 TTTAAAATA
1 TTTAAAATA
20022546 TTTAAAATA
1 TTTAAAATA
20022555 TTTAAAATA
1 TTTAAAATA
20022564 TT
1 TT
20022566 AATATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
TTTAAAATA
Found at i:20022784 original size:15 final size:15
Alignment explanation
Indices: 20022764--20022820 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
20022754 GTTCAATATT
20022764 AATATTTTAATAATA
1 AATATTTTAATAATA
*
20022779 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
20022798 AATATATTAATAATA
1 AATATTTTAATAATA
*
20022813 AATGTTTT
1 AATATTTT
20022821 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:20027358 original size:21 final size:21
Alignment explanation
Indices: 20027332--20027372 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
20027322 CAACGTGGCA
20027332 AGTTAAC-TGACCACATCAGCT
1 AGTTAACTTG-CCACATCAGCT
20027353 AGTTAACTTGCCACATCAGC
1 AGTTAACTTGCCACATCAGC
20027373 AATCCCGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (21 bp):
AGTTAACTTGCCACATCAGCT
Found at i:20028366 original size:22 final size:22
Alignment explanation
Indices: 20028338--20028379 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
20028328 CCACATCAAC
20028338 AAAAAATAAAAAATAAATATTT
1 AAAAAATAAAAAATAAATATTT
* *
20028360 AAAAAATAATAAATATATAT
1 AAAAAATAAAAAATAAATAT
20028380 ACATCTAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (22 bp):
AAAAAATAAAAAATAAATATTT
Found at i:20028496 original size:10 final size:9
Alignment explanation
Indices: 20028477--20028519 Score: 59
Period size: 10 Copynumber: 4.4 Consensus size: 9
20028467 AAACTATAAT
20028477 ATTATAAAA
1 ATTATAAAA
20028486 ATTACTAAAA
1 ATTA-TAAAA
20028496 ATTATAAAAA
1 ATTAT-AAAA
20028506 ATTTATAAAA
1 A-TTATAAAA
20028516 ATTA
1 ATTA
20028520 AATATATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
9 8 0.26
10 19 0.61
11 4 0.13
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (9 bp):
ATTATAAAA
Found at i:20029209 original size:58 final size:56
Alignment explanation
Indices: 20029160--20029287 Score: 175
Period size: 58 Copynumber: 2.2 Consensus size: 56
20029150 ATCACTTTAA
* *
20029160 TATTAAATTAATATAATACTTATCAAGATAAATATTATATTAAATTTAATATTAAATCT
1 TATTAAATTAATAAAATA-TTATCAAGATAAATATTAAATTAAATTTAATATTAAA--T
* *
20029219 TATTAAATTAATAAAATATTATTAAGATAAGTATTAAATTAAATTTAATATTAAAT
1 TATTAAATTAATAAAATATTATCAAGATAAATATTAAATTAAATTTAATATTAAAT
*
20029275 ATATTAAAATAAT
1 -TATTAAATTAAT
20029288 TATTTTTGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
56 1 0.02
57 11 0.17
58 34 0.54
59 17 0.27
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (56 bp):
TATTAAATTAATAAAATATTATCAAGATAAATATTAAATTAAATTTAATATTAAAT
Found at i:20029215 original size:24 final size:22
Alignment explanation
Indices: 20029187--20029240 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
20029177 ACTTATCAAG
20029187 ATAAATATTATATTAAATTTAAT
1 ATAAATATTATATTAAA-TTAAT
*
20029210 ATTAAAT-CT-TATTAAATTAAT
1 A-TAAATATTATATTAAATTAAT
20029231 A-AAATATTAT
1 ATAAATATTAT
20029241 TAAGATAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
19 4 0.15
20 1 0.04
21 7 0.27
22 7 0.27
23 2 0.08
24 5 0.19
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
ATAAATATTATATTAAATTAAT
Found at i:20029240 original size:19 final size:21
Alignment explanation
Indices: 20029187--20029243 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 21
20029177 ACTTATCAAG
20029187 ATAAATATTATATTAAATTTAAT
1 ATAAATA-T-TATTAAATTTAAT
*
20029210 ATTAAATCTTATTAAA-TTAAT
1 A-TAAATATTATTAAATTTAAT
20029231 A-AAATATTATTAA
1 ATAAATATTATTAA
20029244 GATAAGTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 11 0.35
21 6 0.19
22 7 0.23
23 2 0.06
24 5 0.16
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
ATAAATATTATTAAATTTAAT
Found at i:20030249 original size:15 final size:15
Alignment explanation
Indices: 20030229--20030260 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
20030219 CATTTCACTA
*
20030229 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
20030244 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
20030259 TT
1 TT
20030261 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:20036574 original size:8 final size:8
Alignment explanation
Indices: 20036561--20036585 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
20036551 GTTACTAAGT
20036561 TTTGGTAC
1 TTTGGTAC
20036569 TTTGGTAC
1 TTTGGTAC
20036577 TTTGGTAC
1 TTTGGTAC
20036585 T
1 T
20036586 CCTGATAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.52
Consensus pattern (8 bp):
TTTGGTAC
Found at i:20039538 original size:21 final size:22
Alignment explanation
Indices: 20039492--20039556 Score: 55
Period size: 22 Copynumber: 3.0 Consensus size: 22
20039482 TCTTATTTTA
* *
20039492 AAAAAAATTAAAAATTATATAT
1 AAAAAAATTAAAAAATATATAC
20039514 AAAAAAA-TAAAAGAATA-ATAC
1 AAAAAAATTAAAA-AATATATAC
**
20039535 AAAAATGTTAAATAAA-ATATAC
1 AAAAAAATTAAA-AAATATATAC
20039557 TTTTTTATGG
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
21 14 0.40
22 20 0.57
23 1 0.03
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (22 bp):
AAAAAAATTAAAAAATATATAC
Found at i:20040479 original size:31 final size:29
Alignment explanation
Indices: 20040444--20040506 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 29
20040434 AAGTCACCTT
*
20040444 ACTATTATCATTTTTTGTTTTTGGTCACCCA
1 ACTATTATCA-ATTTT-TTTTTGGTCACCCA
*
20040475 AC---TATCAATTTTTTTTTGGTCACCTA
1 ACTATTATCAATTTTTTTTTGGTCACCCA
20040501 ACTATT
1 ACTATT
20040507 GCCCCTCTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
26 15 0.56
27 4 0.15
28 5 0.19
29 1 0.04
31 2 0.07
ACGTcount: A:0.22, C:0.19, G:0.08, T:0.51
Consensus pattern (29 bp):
ACTATTATCAATTTTTTTTTGGTCACCCA
Found at i:20040874 original size:9 final size:9
Alignment explanation
Indices: 20040862--20040901 Score: 64
Period size: 9 Copynumber: 4.4 Consensus size: 9
20040852 CCCCCCCCCC
20040862 AAAAAAAAG
1 AAAAAAAAG
20040871 AAAAAAAAG
1 AAAAAAAAG
20040880 AAAAAAAA-
1 AAAAAAAAG
20040888 AAAGAAAAAG
1 AAA-AAAAAG
20040898 AAAA
1 AAAA
20040902 CTTGCTACTC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 3 0.10
9 23 0.79
10 3 0.10
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:20040877 original size:12 final size:12
Alignment explanation
Indices: 20040862--20040901 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
20040852 CCCCCCCCCC
*
20040862 AAAAAA-AAGAA
1 AAAAAAGAAAAA
20040873 AAAAAAGAAAAA
1 AAAAAAGAAAAA
20040885 AAAAAAGAAAAA
1 AAAAAAGAAAAA
20040897 GAAAA
1 -AAAA
20040902 CTTGCTACTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 6 0.23
12 16 0.62
13 4 0.15
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAAA
Found at i:20044121 original size:18 final size:20
Alignment explanation
Indices: 20044086--20044124 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
20044076 ATAAATAAGT
20044086 AAATAAAGAAAATGAATATAA
1 AAATAAAGAAAA-GAATATAA
20044107 AAATAAA-AAAA-AATATAA
1 AAATAAAGAAAAGAATATAA
20044125 GAAGCTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
20 4 0.22
21 7 0.39
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (20 bp):
AAATAAAGAAAAGAATATAA
Found at i:20044505 original size:3 final size:3
Alignment explanation
Indices: 20044478--20044547 Score: 50
Period size: 3 Copynumber: 22.7 Consensus size: 3
20044468 AATGGAAATG
* * * * * * *
20044478 TAA TGA TAA TAA CAG TAA TAT TAA TAA TAA TAC TAA TAC TAA TAC TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
20044526 TACGA TAA TAA TAG TAA TAA TA
1 TA--A TAA TAA TAA TAA TAA TA
20044548 TTATTATTAT
Statistics
Matches: 49, Mismatches: 16, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
3 46 0.94
5 3 0.06
ACGTcount: A:0.54, C:0.07, G:0.06, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:20044514 original size:12 final size:12
Alignment explanation
Indices: 20044493--20044547 Score: 56
Period size: 12 Copynumber: 4.4 Consensus size: 12
20044483 ATAATAACAG
*
20044493 TAATATTAATAA
1 TAATACTAATAA
*
20044505 TAATACTAATAC
1 TAATACTAATAA
20044517 TAATACTAATACGA
1 TAATACTAATA--A
* *
20044531 TAATAATAGTAA
1 TAATACTAATAA
20044543 TAATA
1 TAATA
20044548 TTATTATTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
12 27 0.75
14 9 0.25
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.35
Consensus pattern (12 bp):
TAATACTAATAA
Found at i:20044526 original size:18 final size:18
Alignment explanation
Indices: 20044483--20044547 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 18
20044473 AAATGTAATG
* * *
20044483 ATAATAACAGTAATATTA
1 ATAATAATACTAATACTA
20044501 ATAATAATACTAATACTA
1 ATAATAATACTAATACTA
* *
20044519 ATACTAATACGATAATAATA
1 ATAATAATAC--TAATACTA
*
20044539 GTAATAATA
1 ATAATAATA
20044548 TTATTATTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
18 24 0.63
20 14 0.37
ACGTcount: A:0.55, C:0.08, G:0.05, T:0.32
Consensus pattern (18 bp):
ATAATAATACTAATACTA
Found at i:20051037 original size:94 final size:96
Alignment explanation
Indices: 20050869--20051067 Score: 294
Period size: 94 Copynumber: 2.1 Consensus size: 96
20050859 ATATGAAATT
* *
20050869 ATCACAGACAAGGCGAATATCCCAAAGTTCATGACAAGTAAGTATTTTTACTCGTATTTTGTAAT
1 ATCA-AGACAAGGCGAATATCCCAAAGTTCATGAC-A--AAGTATTTTGACTCATATTTTGTAAT
*
20050934 AATCTTATATCTTAATCAAAATCAAAATTAAA-CA
62 AATCATATATCTTAATCAAAATCAAAATTAAACCA
* **
20050968 ATCAAGACAAGGTGAATATCTGAAAGTTCATGAC-AAGTATTTTGACTCATATTTTGTAATAATC
1 ATCAAGACAAGGCGAATATCCCAAAGTTCATGACAAAGTATTTTGACTCATATTTTGTAATAATC
20051032 ATATATCTTAATCAAAATCAAAATTAAACCA
66 ATATATCTTAATCAAAATCAAAATTAAACCA
20051063 ATCAA
1 ATCAA
20051068 TTCTATTAAA
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
94 55 0.59
95 7 0.08
98 27 0.29
99 4 0.04
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (96 bp):
ATCAAGACAAGGCGAATATCCCAAAGTTCATGACAAAGTATTTTGACTCATATTTTGTAATAATC
ATATATCTTAATCAAAATCAAAATTAAACCA
Found at i:20051948 original size:17 final size:17
Alignment explanation
Indices: 20051928--20051960 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
20051918 TATAGGATAA
20051928 TAAAATA-AATAGAACAC
1 TAAAATATAA-AGAACAC
20051945 TAAAATATAAAGAACA
1 TAAAATATAAAGAACA
20051961 AATGGTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.67, C:0.09, G:0.06, T:0.18
Consensus pattern (17 bp):
TAAAATATAAAGAACAC
Found at i:20056345 original size:49 final size:49
Alignment explanation
Indices: 20056268--20056368 Score: 132
Period size: 49 Copynumber: 2.1 Consensus size: 49
20056258 TTCTATAGAG
* * *
20056268 AACATATGAAAAGCATTAAACAAGTTATATTATTTCTAAAATGAATTAT
1 AACATATGAAAAGCATTAAACAAATTATATTATTTCCAAAAAGAATTAT
* * *
20056317 AACATATGGAAAGTATTAAA-AACATTATATTCTTTCCAAAAAGAATTAT
1 AACATATGAAAAGCATTAAACAA-ATTATATTATTTCCAAAAAGAATTAT
20056366 AAC
1 AAC
20056369 TACCTTGTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 2 0.04
49 43 0.96
ACGTcount: A:0.50, C:0.10, G:0.08, T:0.33
Consensus pattern (49 bp):
AACATATGAAAAGCATTAAACAAATTATATTATTTCCAAAAAGAATTAT
Found at i:20059966 original size:14 final size:15
Alignment explanation
Indices: 20059947--20059975 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
20059937 CCACCATAGA
20059947 CATA-TTTCACATAT
1 CATATTTTCACATAT
20059961 CATATTTTCACATAT
1 CATATTTTCACATAT
20059976 TAATACTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (15 bp):
CATATTTTCACATAT
Found at i:20061960 original size:27 final size:26
Alignment explanation
Indices: 20061930--20062282 Score: 314
Period size: 27 Copynumber: 13.2 Consensus size: 26
20061920 GGTATAACAA
* *
20061930 TCATTTTAACCTATGGAAGTATTTCGG
1 TCATTTTACCCTATGG-GGTATTTCGG
* *
20061957 TCATTCTACCGTATAGGGGTATTTCGG
1 TCATTTTACCCTAT-GGGGTATTTCGG
* * * *
20061984 TCATTCTACCCTGTGGGGTATGTCGT
1 TCATTTTACCCTATGGGGTATTTCGG
* **
20062010 TTATTTTACCCTATGGGGTATTTCTA
1 TCATTTTACCCTATGGGGTATTTCGG
** *
20062036 TCATTTTACCAAATGGGGGTATTTCGA
1 TCATTTTACCCTAT-GGGGTATTTCGG
* **
20062063 TCATTCTACCCTATGGGGGTATTTCAA
1 TCATTTTACCCTAT-GGGGTATTTCGG
* * *
20062090 TCATTCTACCCTATGACGGTATTTCACG
1 TCATTTTACCCTATG-GGGTATTTC-GG
20062118 -CATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTAT-GGGGTATTTCGG
* *
20062144 TCATTCTACCCTATGAGGGTATTTCGA
1 TCATTTTACCCTATG-GGGTATTTCGG
* * *
20062171 TCATTTTACCCCATAGGGTATTTCTG
1 TCATTTTACCCTATGGGGTATTTCGG
* *
20062197 TCATTCTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTAT-GGGGTATTTCGG
*
20062224 TCATTTTACCCTATGGCAGTA-TTCTGG
1 TCATTTTACCCTATGG-GGTATTTC-GG
* *
20062251 TCATTTTACGCTATGGAGGCATTTCGG
1 TCATTTTACCCTATGG-GGTATTTCGG
20062278 TCATT
1 TCATT
20062283 CAGTCATTCT
Statistics
Matches: 268, Mismatches: 47, Indels: 22
0.80 0.14 0.07
Matches are distributed among these distances:
26 70 0.26
27 192 0.72
28 6 0.02
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (26 bp):
TCATTTTACCCTATGGGGTATTTCGG
Found at i:20062078 original size:53 final size:54
Alignment explanation
Indices: 20061930--20062376 Score: 373
Period size: 54 Copynumber: 8.2 Consensus size: 54
20061920 GGTATAACAA
* * ** * * * *
20061930 TCATTTTAACCTATGGAAGTATTTCGGTCATTCTACCGTATAGGGGTATTTCGG
1 TCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
* * * * **
20061984 TCATTCTACCCTGT-GGGGTATGTCGTTTATTTTACCCTAT-GGGGTATTTCTA
1 TCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
* ** * **
20062036 TCATTTTACCAAATGGGGGTATTTCGATCATTCTACCCTATGGGGGTATTTCAA
1 TCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
** *
20062090 TCATTCTACCCTATGACGGTATTTC-ACGCATTTTACCCTATGGGGGTATTTCGG
1 TCATTCTACCCTATGGGGGTATTTCGA-TCATTTTACCCTATGGGGGTATTTCGG
* * * *
20062144 TCATTCTACCCTATGAGGGTATTTCGATCATTTTACCCCAT-AGGGTATTTCTG
1 TCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
**
20062197 TCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGCAGTA-TTCTGG
1 TCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTC-GG
* * * * * ** *
20062251 TCATTTTACGCTATGGAGGCATTTCGGTCATTCAGTCATTCTACCTTATGTAGGTATTTCAG
1 TCATTCTACCCTATGGGGGTATTTC-G--A-TCA-T--TT-TACCCTATGGGGGTATTTCGG
** * * * *
20062313 TCATTCTACCCTATTAGGGTATTTCGGTCATTTTACCCTATGGGGCTGTTTCGA
1 TCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
*
20062367 TCATTTTACC
1 TCATTCTACC
20062377 TATTTTGGGG
Statistics
Matches: 313, Mismatches: 65, Indels: 30
0.77 0.16 0.07
Matches are distributed among these distances:
52 20 0.06
53 94 0.30
54 149 0.48
55 4 0.01
57 2 0.01
58 6 0.02
59 1 0.00
61 3 0.01
62 31 0.10
63 3 0.01
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.40
Consensus pattern (54 bp):
TCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGG
Found at i:20062211 original size:134 final size:132
Alignment explanation
Indices: 20061983--20062376 Score: 391
Period size: 134 Copynumber: 2.9 Consensus size: 132
20061973 GGGTATTTCG
* * * * * *
20061983 GTCATTCTACCCTGT-GGGGTATGTCGTTTATTTTACCCTATG-GGGTATTTCTATCATTTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGAGGGTATTTC-ATCATTTTACC
* * * * *
20062046 AAATGGGGGTATTTCGATCATTCTACCCTATGGGGGTATTTCAATCATTCTACCCTATGACGGTA
65 CAAT-AGGGTATTTCG-TCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGACAGTA
20062111 TTTCAC
128 -TTCAC
20062117 G-CATTTTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGAGGGTATTTCGATCATTTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGAGGGTATTTC-ATCATTTTACC
* *
20062181 CCATAGGGTATTTCTGTCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGCAGTAT
65 CAATAGGGTATTTC-GTCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGACAGTAT
**
20062246 TCTG
129 TCAC
* * *
20062250 GTCATTTTACGCTATGGAGGCATTTCGGTCATTCAGTCATTCTACCTTATGTA-GGTATTTCAGT
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTC--T-A--C--CC-TATG-AGGGTATTTCA-T
* * * * *
20062314 CATTCTACCCTATTAGGGTATTTCGGTCATTTTACCCTATGGGGCTGTTTCGATCATTTTACC
56 CATTTTACCC-AATAGGGTATTTC-GTCATTCTACCCTATGGGGGTATTTCGATCATTTTACC
20062377 TATTTTGGGG
Statistics
Matches: 219, Mismatches: 26, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
133 15 0.07
134 106 0.48
135 23 0.11
136 1 0.00
137 1 0.00
139 1 0.00
141 3 0.01
142 22 0.10
143 47 0.21
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.40
Consensus pattern (132 bp):
GTCATTTTACCCTATGGGGGTATTTCGGTCATTCTACCCTATGAGGGTATTTCATCATTTTACCC
AATAGGGTATTTCGTCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGACAGTATTC
AC
Found at i:20062319 original size:27 final size:28
Alignment explanation
Indices: 20062281--20062354 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 28
20062271 ATTTCGGTCA
*
20062281 TTCAGTCATTCTACCTTATGTA-GGTAT
1 TTCAGTCATTCTACCCTATGTAGGGTAT
20062308 TTCAGTCATTCTACCCTAT-TAGGGTAT
1 TTCAGTCATTCTACCCTATGTAGGGTAT
* *
20062335 TTCGGTCATTTTACCCTATG
1 TTCAGTCATTCTACCCTATG
20062355 GGGCTGTTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 2 0.05
27 40 0.95
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.43
Consensus pattern (28 bp):
TTCAGTCATTCTACCCTATGTAGGGTAT
Found at i:20062364 original size:27 final size:27
Alignment explanation
Indices: 20062285--20062380 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
20062275 CGGTCATTCA
* * *
20062285 GTCATTCTACCTTATGTA-GGTATTTCA
1 GTCATTTTACCCTAT-TAGGGTATTTCG
*
20062312 GTCATTCTACCCTATTAGGGTATTTCG
1 GTCATTTTACCCTATTAGGGTATTTCG
* *
20062339 GTCATTTTACCCTA-TGGGGCTGTTTCG
1 GTCATTTTACCCTATTAGGG-TATTTCG
*
20062366 ATCATTTTA-CCTATT
1 GTCATTTTACCCTATT
20062381 TTGGGGTCTC
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
26 10 0.17
27 50 0.83
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTATTAGGGTATTTCG
Found at i:20062365 original size:89 final size:88
Alignment explanation
Indices: 20062196--20062371 Score: 207
Period size: 89 Copynumber: 2.0 Consensus size: 88
20062186 GGGTATTTCT
* * *
20062196 GTCATTCTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGCAGTATTCTGGTCATTTTACG
1 GTCATTCTACCCTATGGAGGTATTTCGATCATTCTACCCTATGG-AGTATTCTGGTCATTTTACC
*
20062261 CTATGGAGGCATTTCGGTCATTCA
65 CTATGGAGGCATTTCGATCATTCA
* *
20062285 GTCATTCTACCTTATGTAGGTATTTC-AGTCATTCTACCCTATTAGG-GTATT-TCGGTCATTTT
1 GTCATTCTACCCTATGGAGGTATTTCGA-TCATTCTACCCTA-T-GGAGTATTCT-GGTCATTTT
*
20062347 ACCCTATGG-GGCTGTTTCGATCATT
62 ACCCTATGGAGGC-ATTTCGATCATT
20062372 TTACCTATTT
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
88 5 0.07
89 67 0.89
90 1 0.01
91 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.40
Consensus pattern (88 bp):
GTCATTCTACCCTATGGAGGTATTTCGATCATTCTACCCTATGGAGTATTCTGGTCATTTTACCC
TATGGAGGCATTTCGATCATTCA
Found at i:20062749 original size:152 final size:152
Alignment explanation
Indices: 20062505--20063258 Score: 981
Period size: 152 Copynumber: 5.0 Consensus size: 152
20062495 CAGGTGGGCA
* * * *
20062505 CACACGCTCGTGCGGCCCGTTCAGCCTAGGTTTTGCCACGGCTATGAGATCTACATAGCC-ATGT
1 CACACGCTCGTGCGGCCCATTCAGCCCAGATTTTGCCACGGCTATGAGATTTACATAGCCTA-GT
*
20062569 CCAGTATTTGCCACAAATCGTGGATTTCATCCGTGTGGGGCTCACGAGCCCATTGAGCCCACACG
65 CCAGTATTTGCCACAAATCGTGGATTTCATCCGTGTGGGGCCCACGAGCCCATTGAGCCCACACG
* *
20062634 GTCCATTTC-AGTCCAACGTGGCC
130 GCCCATTTCGA-CCCAACGTGGCC
* * ** *
20062657 CACACGCTCGTGTGGCCCATTCAGCCCAGATTTTGCTACGGCTATGAGATTTGTATAGCCCAGTC
1 CACACGCTCGTGCGGCCCATTCAGCCCAGATTTTGCCACGGCTATGAGATTTACATAGCCTAGTC
* * * * * *
20062722 CAGTATTTGGCACAAATCATTGATTTCATCCGTGTGAGGCCCATGAGCCCATTGAGCCCACACGA
66 CAGTATTTGCCACAAATCGTGGATTTCATCCGTGTGGGGCCCACGAGCCCATTGAGCCCACACGG
20062787 CCCATTTCGACCCAACGTGGCC
131 CCCATTTCGACCCAACGTGGCC
* * * * * * *
20062809 CACATGCTCGTGCGGCCTATTCAGACAAGATTTTACCACGGCTATGAGATCTACATAACCTAGTC
1 CACACGCTCGTGCGGCCCATTCAGCCCAGATTTTGCCACGGCTATGAGATTTACATAGCCTAGTC
* * * * * *
20062874 CAATATTTGCCACAAATTGTGGATTTCATCCGTGTGGGGCTCATGAGCCCATTGTGCCTACACGG
66 CAGTATTTGCCACAAATCGTGGATTTCATCCGTGTGGGGCCCACGAGCCCATTGAGCCCACACGG
**
20062939 CCCATTTCGGTCCAACGTGGCC
131 CCCATTTCGACCCAACGTGGCC
* * * ** **
20062961 CACACGCTCGTGTGGCCCATTCCGCCCAGAGTTCACCACGGCTATGAGATTTGTATAGCCTAGTC
1 CACACGCTCGTGCGGCCCATTCAGCCCAGATTTTGCCACGGCTATGAGATTTACATAGCCTAGTC
* *
20063026 CAGTATTTGGCACAAATCGTGGATTTCATCCGTGTGGGGCCCACGAGCCCATTAAGCCCACACGG
66 CAGTATTTGCCACAAATCGTGGATTTCATCCGTGTGGGGCCCACGAGCCCATTGAGCCCACACGG
20063091 CCCATTTCGACCCAACGTGGCC
131 CCCATTTCGACCCAACGTGGCC
* * * *
20063113 CACATGCTCGTGCGGCCTATTCAGCCTAGATTTTGCCACGGCTATGAGATTTACATAACCTAGTC
1 CACACGCTCGTGCGGCCCATTCAGCCCAGATTTTGCCACGGCTATGAGATTTACATAGCCTAGTC
* * ** * * * *
20063178 CAATATTTGCCACAAATCCTCAATTTTATCCGTGTGGGGCCCACTAGCCCAATAAGCCCACACGG
66 CAGTATTTGCCACAAATCGTGGATTTCATCCGTGTGGGGCCCACGAGCCCATTGAGCCCACACGG
*
20063243 CCCATTTCGGCCCAAC
131 CCCATTTCGACCCAAC
20063259 AAGGTCCATT
Statistics
Matches: 517, Mismatches: 83, Indels: 4
0.86 0.14 0.01
Matches are distributed among these distances:
152 515 1.00
153 2 0.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (152 bp):
CACACGCTCGTGCGGCCCATTCAGCCCAGATTTTGCCACGGCTATGAGATTTACATAGCCTAGTC
CAGTATTTGCCACAAATCGTGGATTTCATCCGTGTGGGGCCCACGAGCCCATTGAGCCCACACGG
CCCATTTCGACCCAACGTGGCC
Found at i:20063059 original size:304 final size:304
Alignment explanation
Indices: 20062505--20063258 Score: 1152
Period size: 304 Copynumber: 2.5 Consensus size: 304
20062495 CAGGTGGGCA
* ** * *
20062505 CACACGCTCGTGCGGCCCGTTCAGCCTAGGTTTTGCCACGGCTATGAGATCTACATAGCC-ATGT
1 CACATGCTCGTGCGGCCTATTCAGCCTAGATTTTGCCACGGCTATGAGATCTACATAACCTA-GT
* *
20062569 CCAGTATTTGCCACAAATCGTGGATTTCATCCGTGTGGGGCTCACGAGCCCATTGAGCCCACACG
65 CCAATATTTGCCACAAATCGTGGATTTCATCCGTGTGGGGCTCATGAGCCCATTGAGCCCACACG
* * * ** *
20062634 GTCCATTTCAGTCCAACGTGGCCCACACGCTCGTGTGGCCCATTCAGCCCAGATTTTGCTACGGC
130 GCCCATTTCGGTCCAACGTGGCCCACACGCTCGTGTGGCCCATTCAGCCCAGAGTTCACCACGGC
*
20062699 TATGAGATTTGTATAGCCCAGTCCAGTATTTGGCACAAATCATTGATTTCATCCGTGTGAGGCCC
195 TATGAGATTTGTATAGCCCAGTCCAGTATTTGGCACAAATCATGGATTTCATCCGTGTGAGGCCC
* *
20062764 ATGAGCCCATTGAGCCCACACGACCCATTTCGACCCAACGTGGCC
260 ACGAGCCCATTAAGCCCACACGACCCATTTCGACCCAACGTGGCC
* * *
20062809 CACATGCTCGTGCGGCCTATTCAGACAAGATTTTACCACGGCTATGAGATCTACATAACCTAGTC
1 CACATGCTCGTGCGGCCTATTCAGCCTAGATTTTGCCACGGCTATGAGATCTACATAACCTAGTC
* * *
20062874 CAATATTTGCCACAAATTGTGGATTTCATCCGTGTGGGGCTCATGAGCCCATTGTGCCTACACGG
66 CAATATTTGCCACAAATCGTGGATTTCATCCGTGTGGGGCTCATGAGCCCATTGAGCCCACACGG
*
20062939 CCCATTTCGGTCCAACGTGGCCCACACGCTCGTGTGGCCCATTCCGCCCAGAGTTCACCACGGCT
131 CCCATTTCGGTCCAACGTGGCCCACACGCTCGTGTGGCCCATTCAGCCCAGAGTTCACCACGGCT
* * *
20063004 ATGAGATTTGTATAGCCTAGTCCAGTATTTGGCACAAATCGTGGATTTCATCCGTGTGGGGCCCA
196 ATGAGATTTGTATAGCCCAGTCCAGTATTTGGCACAAATCATGGATTTCATCCGTGTGAGGCCCA
*
20063069 CGAGCCCATTAAGCCCACACGGCCCATTTCGACCCAACGTGGCC
261 CGAGCCCATTAAGCCCACACGACCCATTTCGACCCAACGTGGCC
*
20063113 CACATGCTCGTGCGGCCTATTCAGCCTAGATTTTGCCACGGCTATGAGATTTACATAACCTAGTC
1 CACATGCTCGTGCGGCCTATTCAGCCTAGATTTTGCCACGGCTATGAGATCTACATAACCTAGTC
* ** * * * *
20063178 CAATATTTGCCACAAATCCTCAATTTTATCCGTGTGGGGCCCACT-AGCCCAATAAGCCCACACG
66 CAATATTTGCCACAAATCGTGGATTTCATCCGTGTGGGGCTCA-TGAGCCCATTGAGCCCACACG
*
20063242 GCCCATTTCGGCCCAAC
130 GCCCATTTCGGTCCAAC
20063259 AAGGTCCATT
Statistics
Matches: 406, Mismatches: 42, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
304 404 1.00
305 2 0.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (304 bp):
CACATGCTCGTGCGGCCTATTCAGCCTAGATTTTGCCACGGCTATGAGATCTACATAACCTAGTC
CAATATTTGCCACAAATCGTGGATTTCATCCGTGTGGGGCTCATGAGCCCATTGAGCCCACACGG
CCCATTTCGGTCCAACGTGGCCCACACGCTCGTGTGGCCCATTCAGCCCAGAGTTCACCACGGCT
ATGAGATTTGTATAGCCCAGTCCAGTATTTGGCACAAATCATGGATTTCATCCGTGTGAGGCCCA
CGAGCCCATTAAGCCCACACGACCCATTTCGACCCAACGTGGCC
Found at i:20063867 original size:15 final size:15
Alignment explanation
Indices: 20063849--20063882 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
20063839 CGACCAAAAA
*
20063849 CAAAGAACGTATTAT
1 CAAACAACGTATTAT
20063864 CAAACAACGTATTAT
1 CAAACAACGTATTAT
20063879 CAAA
1 CAAA
20063883 AACTATTCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.50, C:0.18, G:0.09, T:0.24
Consensus pattern (15 bp):
CAAACAACGTATTAT
Found at i:20064056 original size:27 final size:27
Alignment explanation
Indices: 20064027--20064307 Score: 346
Period size: 27 Copynumber: 10.4 Consensus size: 27
20064017 GGGTATAATA
* * * * *
20064027 GTCATTTTAACCTATAGGGGCATTTCA
1 GTCATTCTACCCTATGGGGGTATTTCG
* *
20064054 GTCATTCTACCCCATGGGGGTATTTTG
1 GTCATTCTACCCTATGGGGGTATTTCG
* *
20064081 ATCATTCTACCCTGTGGGGGTATTTCG
1 GTCATTCTACCCTATGGGGGTATTTCG
*
20064108 GTCATTCTACCCTATGAGGGTATTTCG
1 GTCATTCTACCCTATGGGGGTATTTCG
* **
20064135 GTCATTCTACTCTATGGGGAAATTTCG
1 GTCATTCTACCCTATGGGGGTATTTCG
*
20064162 GTCATTCTACCCTATGGGGGTATTTTG
1 GTCATTCTACCCTATGGGGGTATTTCG
*
20064189 GTCATTCTACCCTATGGGGGTATTTCA
1 GTCATTCTACCCTATGGGGGTATTTCG
* ** *
20064216 GTCATTATACCCTATAAGGGTATTTCA
1 GTCATTCTACCCTATGGGGGTATTTCG
* *
20064243 ATCATTCAACCCTATGGGGGTATTTCG
1 GTCATTCTACCCTATGGGGGTATTTCG
* *
20064270 GTCATTTTACCCTATGGGGGTGTTTCG
1 GTCATTCTACCCTATGGGGGTATTTCG
*
20064297 GTCATTTTACC
1 GTCATTCTACC
20064308 TATTTTGGGG
Statistics
Matches: 217, Mismatches: 37, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 217 1.00
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (27 bp):
GTCATTCTACCCTATGGGGGTATTTCG
Found at i:20070374 original size:50 final size:50
Alignment explanation
Indices: 20070246--20070443 Score: 180
Period size: 50 Copynumber: 3.8 Consensus size: 50
20070236 ATTTGGGTAA
* * * * *
20070246 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATG
1 AGAGGTCCCAAGTAAGACCATGTCTAGGACATGGCATGGGCA-C--CGA-G--ATG
*
20070302 AGAGGTCCCAAGTAAGACCATGTCTAGGACATGGCGTGGGCACCGAGATG
1 AGAGGTCCCAAGTAAGACCATGTCTAGGACATGGCATGGGCACCGAGATG
** * *
20070352 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCAAGTAAGACCATGTCTAGGACATGGCATGGGCACCGAGATG
** * * * * * *
20070402 AGAACTCCCATGTAATACCATATCTGGGATATGGCATTGGCA
1 AGAGGTCCCAAGTAAGACCATGTCTAGGACATGGCATGGGCA
20070444 GTACAAGAAA
Statistics
Matches: 123, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
50 82 0.67
52 1 0.01
53 2 0.02
55 1 0.01
56 37 0.30
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCAAGTAAGACCATGTCTAGGACATGGCATGGGCACCGAGATG
Found at i:20070478 original size:49 final size:49
Alignment explanation
Indices: 20070307--20070492 Score: 160
Period size: 50 Copynumber: 3.8 Consensus size: 49
20070297 TTATGAGAGG
* * * * * * **
20070307 TCCCAAGTAAGACCATGTCTAGGACATGGCGTGGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGACAAGAGAAC
** * * *
20070357 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGACAAGAGAAC
* * *
20070407 TCCCATGTAATACCATATCTGGGATATGGCATTGGCA-GTACAAGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACG-ACAAGAGAAC
* *
20070455 ATCCCATGTAAGACCATGCCTGGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
20070493 TGTTATTATC
Statistics
Matches: 114, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
48 4 0.04
49 36 0.32
50 74 0.65
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.20
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGACAAGAGAAC
Found at i:20082594 original size:20 final size:20
Alignment explanation
Indices: 20082569--20082675 Score: 117
Period size: 20 Copynumber: 5.3 Consensus size: 20
20082559 TTGTTCGGGA
*
20082569 TTTGCACTTCGGTGCCCTTG
1 TTTGCACTTCGGTGCCCCTG
* *
20082589 TTTGCACTTTGGTGCCCCTA
1 TTTGCACTTCGGTGCCCCTG
*
20082609 TTTGTACTTCGGTGCCCCTG
1 TTTGCACTTCGGTGCCCCTG
*
20082629 TTTGCACATT-TGTGCCCCTG
1 TTTGCAC-TTCGGTGCCCCTG
* * *
20082649 TCTACACTTTGGTGCCCCTG
1 TTTGCACTTCGGTGCCCCTG
20082669 TTATGCA
1 TT-TGCA
20082676 TCTATGATGC
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
19 2 0.03
20 64 0.90
21 5 0.07
ACGTcount: A:0.09, C:0.30, G:0.21, T:0.39
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCCCTG
Found at i:20082623 original size:40 final size:40
Alignment explanation
Indices: 20082568--20082675 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 40
20082558 CTTGTTCGGG
*
20082568 ATTTGCACTTCGGTGCCCTTGTTTGCAC-TTTGGTGCCCCT
1 ATTTGCACTTCGGTGCCCCTGTTTGCACATTT-GTGCCCCT
*
20082608 ATTTGTACTTCGGTGCCCCTGTTTGCACATTTGTGCCCCT
1 ATTTGCACTTCGGTGCCCCTGTTTGCACATTTGTGCCCCT
* * * *
20082648 GTCTACACTTTGGTGCCCCTGTTATGCA
1 ATTTGCACTTCGGTGCCCCTGTT-TGCA
20082676 TCTATGATGC
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
40 52 0.88
41 7 0.12
ACGTcount: A:0.10, C:0.30, G:0.21, T:0.39
Consensus pattern (40 bp):
ATTTGCACTTCGGTGCCCCTGTTTGCACATTTGTGCCCCT
Done.