Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 65 of 198
Found at i:20092851 original size:20 final size:20
Alignment explanation
Indices: 20092828--20092933 Score: 59
Period size: 20 Copynumber: 5.3 Consensus size: 20
20092818 TTGTCCACAA
20092828 TACTGGCAGTTTATCTGCAT
1 TACTGGCAGTTTATCTGCAT
* * * *
20092848 TACTGGAAATTTATTTGCAC
1 TACTGGCAGTTTATCTGCAT
* ** * * ** *
20092868 TATTGGTGGCTTGTCCACAA
1 TACTGGCAGTTTATCTGCAT
* ** *
20092888 TACTGACAACTTGTCTGCAT
1 TACTGGCAGTTTATCTGCAT
*
20092908 TACTGGCAGTTTATATGCAT
1 TACTGGCAGTTTATCTGCAT
20092928 TACTGG
1 TACTGG
20092934 TGGCTTGTCC
Statistics
Matches: 59, Mismatches: 27, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.38
Consensus pattern (20 bp):
TACTGGCAGTTTATCTGCAT
Found at i:20092852 original size:40 final size:40
Alignment explanation
Indices: 20092755--20092853 Score: 144
Period size: 40 Copynumber: 2.5 Consensus size: 40
20092745 AAGTACCGAT
* * *
20092755 AGTTTACCTACACTACTAGTGGCCTGTCCACAATACTAGC
1 AGTTTATCTGCACTACTGGTGGCCTGTCCACAATACTAGC
* *
20092795 AGTTTATCTGCACTACTGGTGGCTTGTCCACAATACTGGC
1 AGTTTATCTGCACTACTGGTGGCCTGTCCACAATACTAGC
*
20092835 AGTTTATCTGCATTACTGG
1 AGTTTATCTGCACTACTGG
20092854 AAATTTATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (40 bp):
AGTTTATCTGCACTACTGGTGGCCTGTCCACAATACTAGC
Found at i:20092890 original size:60 final size:60
Alignment explanation
Indices: 20092797--20092947 Score: 212
Period size: 60 Copynumber: 2.5 Consensus size: 60
20092787 ATACTAGCAG
* * **
20092797 TTTATCTGCACTACTGGTGGCTTGTCCACAATACTGGCAGTTTATCTGCATTACTGGAAA
1 TTTATATGCACTACTGGTGGCTTGTCCACAATACTGACAACTTATCTGCATTACTGGAAA
* * * * *
20092857 TTTATTTGCACTATTGGTGGCTTGTCCACAATACTGACAACTTGTCTGCATTACTGGCAG
1 TTTATATGCACTACTGGTGGCTTGTCCACAATACTGACAACTTATCTGCATTACTGGAAA
*
20092917 TTTATATGCATTACTGGTGGCTTGTCCACAA
1 TTTATATGCACTACTGGTGGCTTGTCCACAA
20092948 ATTGGAGTGT
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 80 1.00
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (60 bp):
TTTATATGCACTACTGGTGGCTTGTCCACAATACTGACAACTTATCTGCATTACTGGAAA
Found at i:20093339 original size:27 final size:27
Alignment explanation
Indices: 20093295--20093488 Score: 141
Period size: 27 Copynumber: 7.2 Consensus size: 27
20093285 GATTCCAAAA
* *
20093295 AGGGAAAAATAACCGAAAAACCCCTAT
1 AGGGTAAAATGACCGAAAAACCCCTAT
* *
20093322 AGGGTAAAATGACTGAAATAATCCC-AT
1 AGGGTAAAATGACCGAAA-AACCCCTAT
* * * *
20093349 AAGGTAAAATGATCGAAATACCCCCAT
1 AGGGTAAAATGACCGAAAAACCCCTAT
* *
20093376 AAGGTAAAATGATC-AAAATA-CCCTCAT
1 AGGGTAAAATGACCGAAAA-ACCCCT-AT
* *
20093403 AGGGTAAAATGACCGAAATA-CTCTAT
1 AGGGTAAAATGACCGAAAAACCCCTAT
* *
20093429 AGGGTAAAATTACCGAAATACCACC-AT
1 AGGGTAAAATGACCGAAAAACC-CCTAT
* *
20093456 TGGGTAAAATGAACC-AAATA-CCCTCAT
1 AGGGTAAAATG-ACCGAAAAACCCCT-AT
20093483 AGGGTA
1 AGGGTA
20093489 TGTAAAGCCT
Statistics
Matches: 137, Mismatches: 20, Indels: 20
0.77 0.11 0.11
Matches are distributed among these distances:
25 2 0.01
26 32 0.23
27 91 0.66
28 12 0.09
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.20
Consensus pattern (27 bp):
AGGGTAAAATGACCGAAAAACCCCTAT
Found at i:20093466 original size:80 final size:81
Alignment explanation
Indices: 20093316--20093488 Score: 233
Period size: 80 Copynumber: 2.2 Consensus size: 81
20093306 ACCGAAAAAC
* * *
20093316 CCCT-ATAGGGTAAAATGACTGAAATAATCCCATAAGGTAAAATGATCGAAATACCCCCATAAGG
1 CCCTCATAGGGTAAAATGACCGAAATAATCCCATAAGGTAAAATGACCGAAATACCACCATAAGG
*
20093380 TAAAATGATCAAAATA
66 TAAAATGAACAAAATA
* * * * **
20093396 CCCTCATAGGGTAAAATGACCGAAATACT-CTATAGGGTAAAATTACCGAAATACCACCATTGGG
1 CCCTCATAGGGTAAAATGACCGAAATAATCCCATAAGGTAAAATGACCGAAATACCACCATAAGG
*
20093460 TAAAATGAACCAAATA
66 TAAAATGAACAAAATA
20093476 CCCTCATAGGGTA
1 CCCTCATAGGGTA
20093489 TGTAAAGCCT
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 59 0.73
81 22 0.27
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (81 bp):
CCCTCATAGGGTAAAATGACCGAAATAATCCCATAAGGTAAAATGACCGAAATACCACCATAAGG
TAAAATGAACAAAATA
Found at i:20094646 original size:27 final size:27
Alignment explanation
Indices: 20094496--20094633 Score: 224
Period size: 27 Copynumber: 5.1 Consensus size: 27
20094486 TTAGAATACT
20094496 TTGGTTTACAAAATTACTGAAATACCC
1 TTGGTTTACAAAATTACTGAAATACCC
20094523 TTGGTTTACAAAATTACTGAAATACCC
1 TTGGTTTACAAAATTACTGAAATACCC
* *
20094550 TTGGTTTATAAAATTACTAAAATACCC
1 TTGGTTTACAAAATTACTGAAATACCC
*
20094577 TTGGTTTACAAAATTACT-AAACTACCA
1 TTGGTTTACAAAATTACTGAAA-TACCC
*
20094604 TTGGCTTACAAAATTACTGAAATACCC
1 TTGGTTTACAAAATTACTGAAATACCC
20094631 TTG
1 TTG
20094634 ACTTGTAAAA
Statistics
Matches: 103, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
26 3 0.03
27 97 0.94
28 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (27 bp):
TTGGTTTACAAAATTACTGAAATACCC
Found at i:20094665 original size:81 final size:81
Alignment explanation
Indices: 20094499--20094683 Score: 225
Period size: 81 Copynumber: 2.3 Consensus size: 81
20094489 GAATACTTTG
* * **
20094499 GTTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACTGAAATACCCTTGGTTTATAAAAT
1 GTTTACAAAATTACTGAAATACCATTGGCTTACAAAATTACTGAAATACCCTTGACTTATAAAAT
**
20094564 TACTAAAATACCCTTG
66 TACTAAAATACCCTCA
*
20094580 GTTTACAAAATTACT-AAACTACCATTGGCTTACAAAATTACTGAAATACCCTTGACTTGTAAAA
1 GTTTACAAAATTACTGAAA-TACCATTGGCTTACAAAATTACTGAAATACCCTTGACTTATAAAA
*
20094644 TTA-TCAAAGTA-CCTCCA
65 TTACT-AAAATACCCT-CA
*
20094661 GTTTATAAAATTA-TCGAAATACC
1 GTTTACAAAATTACT-GAAATACC
20094684 CTCAATTTGT
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
80 8 0.09
81 79 0.88
82 3 0.03
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.33
Consensus pattern (81 bp):
GTTTACAAAATTACTGAAATACCATTGGCTTACAAAATTACTGAAATACCCTTGACTTATAAAAT
TACTAAAATACCCTCA
Found at i:20094669 original size:27 final size:27
Alignment explanation
Indices: 20094639--20094765 Score: 109
Period size: 27 Copynumber: 4.7 Consensus size: 27
20094629 CCTTGACTTG
*
20094639 TAAAATTATCAAAGTA-CCTCCAGTTTA
1 TAAAATTATCAAAGTACCCT-CAATTTA
*
20094666 TAAAATTATCGAAA-TACCCTCAATTTG
1 TAAAATTATC-AAAGTACCCTCAATTTA
* * * *
20094693 TGAAATTACCAAAGTACCC-CGATTTG
1 TAAAATTATCAAAGTACCCTCAATTTA
* *
20094719 CAAAATTACTGAAA-TACCCTCAATTTA
1 TAAAATTA-TCAAAGTACCCTCAATTTA
* *
20094746 GAAAATTATCAAAATACCCT
1 TAAAATTATCAAAGTACCCT
20094766 TATATGGTAA
Statistics
Matches: 81, Mismatches: 13, Indels: 12
0.76 0.12 0.11
Matches are distributed among these distances:
26 24 0.30
27 51 0.63
28 6 0.07
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
TAAAATTATCAAAGTACCCTCAATTTA
Found at i:20094671 original size:54 final size:53
Alignment explanation
Indices: 20094498--20094764 Score: 216
Period size: 54 Copynumber: 5.0 Consensus size: 53
20094488 AGAATACTTT
* * *
20094498 GGTTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACTGAAA-TACCCTT
1 GGTTTACAAAATTACTGAAATACCCTTGATTTACAAAATTA-TCAAAGTACCC-C
* * * * **
20094552 GGTTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTA-CTAAACTACCATT
1 GGTTTACAAAATTACTGAAATACCCTTGATTTACAAAATTATC-AAAGTACC-CC
* * **
20094606 GGCTTACAAAATTACTGAAATACCCTTGACTTGTAAAATTATCAAAGTACCTCC
1 GGTTTACAAAATTACTGAAATACCCTTGATTTACAAAATTATCAAAGTACC-CC
* * ** *** *
20094660 AGTTTATAAAATTA-TCGAAATACCCTCAATTTGTGAAATTACCAAAGTACCCC
1 GGTTTACAAAATTACT-GAAATACCCTTGATTTACAAAATTATCAAAGTACCCC
* * ** * *
20094713 GATTTGCAAAATTACTGAAATACCCTCAATTTAGAAAATTATCAAAATACCC
1 GGTTTACAAAATTACTGAAATACCCTTGATTTACAAAATTATCAAAGTACCC
20094765 TTATATGGTA
Statistics
Matches: 175, Mismatches: 32, Indels: 13
0.80 0.15 0.06
Matches are distributed among these distances:
53 47 0.27
54 127 0.73
55 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (53 bp):
GGTTTACAAAATTACTGAAATACCCTTGATTTACAAAATTATCAAAGTACCCC
Found at i:20094764 original size:53 final size:53
Alignment explanation
Indices: 20094609--20094764 Score: 183
Period size: 53 Copynumber: 2.9 Consensus size: 53
20094599 TACCATTGGC
** *
20094609 TTACAAAATTACTGAAATACCCTTGACTTGTAAAATTATCAAAGTACCTCCAGT
1 TTACAAAATTACTGAAATACCCTCAATTTGTAAAATTATCAAAGTACC-CCAGT
* * *
20094663 TTATAAAATTA-TCGAAATACCCTCAATTTGTGAAATTACCAAAGTACCCC-GAT
1 TTACAAAATTACT-GAAATACCCTCAATTTGTAAAATTATCAAAGTACCCCAG-T
* *
20094716 TTGCAAAATTACTGAAATACCCTCAATTTAG-AAAATTATCAAAATACCC
1 TTACAAAATTACTGAAATACCCTCAATTT-GTAAAATTATCAAAGTACCC
20094765 TTATATGGTA
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
52 1 0.01
53 44 0.51
54 42 0.48
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (53 bp):
TTACAAAATTACTGAAATACCCTCAATTTGTAAAATTATCAAAGTACCCCAGT
Found at i:20095274 original size:27 final size:27
Alignment explanation
Indices: 20095222--20095275 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
20095212 TACTGATATG
* * *
20095222 GTATTGGGCTAAGGCCCCCTTAGTTCT
1 GTATTGGGCTAAAGCCACATTAGTTCT
20095249 GTATTGGGCTAAAGCCTACATT-GTTCT
1 GTATTGGGCTAAAGCC-ACATTAGTTCT
20095276 ATTTTGTTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (27 bp):
GTATTGGGCTAAAGCCACATTAGTTCT
Found at i:20096928 original size:20 final size:20
Alignment explanation
Indices: 20096888--20096928 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
20096878 ATCGTGATTT
*
20096888 AAAAAGTTATTCCTTTTAAA
1 AAAAAGTTATTCCTTTCAAA
20096908 AAAAAGTTATTACC-TTCAAA
1 AAAAAGTTATT-CCTTTCAAA
20096928 A
1 A
20096929 CCTTGTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.34
Consensus pattern (20 bp):
AAAAAGTTATTCCTTTCAAA
Found at i:20097552 original size:27 final size:27
Alignment explanation
Indices: 20097512--20097567 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
20097502 CAGTAACAGA
* *
20097512 ACAGAACAATGTGGGCTTTAGCCCAAT
1 ACAGAACAAGGTGGGCCTTAGCCCAAT
20097539 ACAGAACAAGGTGGGCCTTAGCCCAAT
1 ACAGAACAAGGTGGGCCTTAGCCCAAT
20097566 AC
1 AC
20097568 CATATCTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (27 bp):
ACAGAACAAGGTGGGCCTTAGCCCAAT
Found at i:20098019 original size:27 final size:28
Alignment explanation
Indices: 20097988--20098159 Score: 99
Period size: 27 Copynumber: 6.4 Consensus size: 28
20097978 AAGGGCAAAA
* *
20097988 CGGTAATTTTACCCAATA-AGGGTATTT
1 CGGTAATTTTACCAAACAGAGGGTATTT
*
20098015 TGGTAATTTT-CCAAACAGAGGGTATTT
1 CGGTAATTTTACCAAACAGAGGGTATTT
* *
20098042 CGATAATTTTA-CAAATCGGA-GGTACTTT
1 CGGTAATTTTACCAAA-CAGAGGGTA-TTT
* * *
20098070 -GGTAATTTT-TCAAACCGAGGATATTT
1 CGGTAATTTTACCAAACAGAGGGTATTT
* * * * * *
20098096 TGATAATTTT-CCATACCGGGGGTACTT
1 CGGTAATTTTACCAAACAGAGGGTATTT
* ***
20098123 CGATAATTTTA-CAAGTTGAGGGTATTT
1 CGGTAATTTTACCAAACAGAGGGTATTT
*
20098150 CAGTAATTTT
1 CGGTAATTTT
20098160 GGAAACCAAC
Statistics
Matches: 113, Mismatches: 24, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
26 11 0.10
27 96 0.85
28 6 0.05
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (28 bp):
CGGTAATTTTACCAAACAGAGGGTATTT
Found at i:20098073 original size:54 final size:54
Alignment explanation
Indices: 20098008--20098159 Score: 153
Period size: 54 Copynumber: 2.8 Consensus size: 54
20097998 ACCCAATAAG
* * *
20098008 GGTATTTTGGTAATTTTCCAAACAGAGGGTATTTCGATAATTTTACAAATCGGA
1 GGTACTTTGGTAATTTTACAAACAGAGGGTATTTCGATAATTTTACAAACCGGA
* * * * * * *
20098062 GGTACTTTGGTAATTTTTCAAACCGAGGATATTTTGATAATTTTCCATACCGGG
1 GGTACTTTGGTAATTTTACAAACAGAGGGTATTTCGATAATTTTACAAACCGGA
* * ***
20098116 GGTACTTCGATAATTTTACAAGTTGAGGGTATTTC-AGTAATTTT
1 GGTACTTTGGTAATTTTACAAACAGAGGGTATTTCGA-TAATTTT
20098160 GGAAACCAAC
Statistics
Matches: 80, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 1 0.01
54 79 0.99
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.39
Consensus pattern (54 bp):
GGTACTTTGGTAATTTTACAAACAGAGGGTATTTCGATAATTTTACAAACCGGA
Found at i:20098166 original size:81 final size:81
Alignment explanation
Indices: 20098010--20098166 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 81
20098000 CCAATAAGGG
* * *
20098010 TATTTTGGTAATTTTCCAAACAGAGGGTATTTCGATAATTTTACAAATCGGAGGTACTTTGGTAA
1 TATTTTGATAATTTTCCAAACAGAGGGTACTTCGATAATTTTACAAATCGGAGGTACTTTAGTAA
*
20098075 TTTTTCAAACCGAGGA
66 TTTTGCAAACCGAGGA
* * * * *
20098091 TATTTTGATAATTTTCCATACCGGGGGTACTTCGATAATTTTACAAGT-TGAGGGTA-TTTCAGT
1 TATTTTGATAATTTTCCAAACAGAGGGTACTTCGATAATTTTACAAATCGGA-GGTACTTT-AGT
*
20098154 AATTTTGGAAACC
64 AATTTTGCAAACC
20098167 AACAGTATTT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 5 0.08
81 59 0.92
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (81 bp):
TATTTTGATAATTTTCCAAACAGAGGGTACTTCGATAATTTTACAAATCGGAGGTACTTTAGTAA
TTTTGCAAACCGAGGA
Found at i:20098174 original size:27 final size:27
Alignment explanation
Indices: 20098144--20098228 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
20098134 CAAGTTGAGG
* *
20098144 GTATTTCAGTAATTTTGGAAACCAACA
1 GTATTTCAGTAATTTTGTAAACCAAAA
* *
20098171 GTATTTCAATAATTTTGTAAA-CAAAGG
1 GTATTTCAGTAATTTTGTAAACCAAA-A
*
20098198 GTATTTCAGAAATTTTGTAAA-CAAAA
1 GTATTTCAGTAATTTTGTAAACCAAAA
20098224 GTATT
1 GTATT
20098229 CTAAACAGAC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.36
Consensus pattern (27 bp):
GTATTTCAGTAATTTTGTAAACCAAAA
Found at i:20098176 original size:81 final size:80
Alignment explanation
Indices: 20098009--20098213 Score: 182
Period size: 81 Copynumber: 2.5 Consensus size: 80
20097999 CCCAATAAGG
* * *
20098009 GTATTTTGGTAATTTTCCAAACAGAGGGTATTTCGATAATTTTACAAATCGGAGGTACTTTGGTA
1 GTATTTTGATAATTTTCCAAACAGAGGGTACTTCGATAATTTTACAAATCGGAGGTACTTTAGTA
* * *
20098074 ATTTTTCAAACCGAG
66 ATTTTGCAAACCAAA
* * * * *
20098089 GATATTTTGATAATTTTCCATACCGGGGGTACTTCGATAATTTTACAAGT-TGAGGGTA-TTTCA
1 G-TATTTTGATAATTTTCCAAACAGAGGGTACTTCGATAATTTTACAAATCGGA-GGTACTTT-A
*
20098152 GTAATTTTGGAAACCAACA
63 GTAATTTTGCAAACCAA-A
** ** * *
20098171 GTATTTCAATAATTTTGTAAACAAAGGGTATTTCAGA-AATTTT
1 GTATTTTGATAATTTTCCAAACAGAGGGTACTTC-GATAATTTT
20098214 GTAAACAAAA
Statistics
Matches: 99, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
80 6 0.06
81 90 0.91
82 3 0.03
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.38
Consensus pattern (80 bp):
GTATTTTGATAATTTTCCAAACAGAGGGTACTTCGATAATTTTACAAATCGGAGGTACTTTAGTA
ATTTTGCAAACCAAA
Found at i:20098391 original size:17 final size:17
Alignment explanation
Indices: 20098369--20098403 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
20098359 AACTTATCTG
*
20098369 ATTGGGCCCATTGGCCC
1 ATTGGGCCCACTGGCCC
20098386 ATTGGGCCCACTGGCCC
1 ATTGGGCCCACTGGCCC
20098403 A
1 A
20098404 AATAGCCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.37, G:0.29, T:0.20
Consensus pattern (17 bp):
ATTGGGCCCACTGGCCC
Found at i:20101096 original size:27 final size:27
Alignment explanation
Indices: 20101056--20101111 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
20101046 CAGTAATAGA
* *
20101056 ACAGAACAATGTGGGCTTTAGCCCAAT
1 ACAGAACAAGGTGGGCCTTAGCCCAAT
*
20101083 ACAGAACAAGGTGGGCCTTAGCCTAAT
1 ACAGAACAAGGTGGGCCTTAGCCCAAT
20101110 AC
1 AC
20101112 CATATCAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
ACAGAACAAGGTGGGCCTTAGCCCAAT
Found at i:20101697 original size:27 final size:27
Alignment explanation
Indices: 20101667--20101733 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 27
20101657 GGTTGTTTTG
*
20101667 GTAATTTTTTAAATTGAGGGAACTTCA
1 GTAATTTTATAAATTGAGGGAACTTCA
* * * * *
20101694 GTAATTTTACAAGTTGAGGGTATTTTA
1 GTAATTTTATAAATTGAGGGAACTTCA
*
20101721 GTAATTTTGTAAA
1 GTAATTTTATAAA
20101734 CCAAGGGTAT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.43
Consensus pattern (27 bp):
GTAATTTTATAAATTGAGGGAACTTCA
Found at i:20101698 original size:81 final size:81
Alignment explanation
Indices: 20101612--20101760 Score: 183
Period size: 81 Copynumber: 1.8 Consensus size: 81
20101602 AGGACATTTT
* * * * * * *
20101612 AGTAATTTTGCAAATCAG-GGGTACTTTGGTAATTTTGCAAACCGAGGTTGTTTTGGTAATTTTT
1 AGTAATTTTACAAAT-AGAGGGTACTTTAGTAATTTTGCAAACCAAGGGTATTTTAGTAATTTTG
20101676 TAAATTGAGGGAACTTC
65 TAAATTGAGGGAACTTC
* * * *
20101693 AGTAATTTTACAAGTTGAGGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGT
1 AGTAATTTTACAAATAGAGGGTACTTTAGTAATTTTGCAAACCAAGGGTATTTTAGTAATTTTGT
20101758 AAA
66 AAA
20101761 CCAAAGTATT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
80 1 0.02
81 55 0.98
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.41
Consensus pattern (81 bp):
AGTAATTTTACAAATAGAGGGTACTTTAGTAATTTTGCAAACCAAGGGTATTTTAGTAATTTTGT
AAATTGAGGGAACTTC
Found at i:20101740 original size:27 final size:27
Alignment explanation
Indices: 20101710--20101764 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
20101700 TTACAAGTTG
20101710 AGGGTATTTTAGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTGTAAACCA
20101737 AGGGTATTTTAGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTGTAAACCA
20101764 A
1 A
20101765 AGTATTCGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTGTAAACCA
Found at i:20101751 original size:54 final size:54
Alignment explanation
Indices: 20101574--20101755 Score: 148
Period size: 54 Copynumber: 3.4 Consensus size: 54
20101564 TTTTCCCTAT
* * * * *
20101574 AAGGGTATTTCGGTAATTTTCCAAAATGAGGACATTTTAGTAATTTTGCAAATC
1 AAGGGTACTTCAGTAATTTTACAAAATGAGGATATTTTAGTAATTTTGTAAATC
* ** * ** * * * * *
20101628 AGGGGTACTTTGGTAATTTTGCAAACCGAGGTTGTTTTGGTAATTTTTTAAATT
1 AAGGGTACTTCAGTAATTTTACAAAATGAGGATATTTTAGTAATTTTGTAAATC
* * ** * *
20101682 GAGGGAACTTCAGTAATTTTACAAGTTGAGGGTATTTTAGTAATTTTGTAAACC
1 AAGGGTACTTCAGTAATTTTACAAAATGAGGATATTTTAGTAATTTTGTAAATC
* *
20101736 AAGGGTATTTTAGTAATTTT
1 AAGGGTACTTCAGTAATTTT
20101756 GTAAACCAAA
Statistics
Matches: 96, Mismatches: 32, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
54 96 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
AAGGGTACTTCAGTAATTTTACAAAATGAGGATATTTTAGTAATTTTGTAAATC
Found at i:20103879 original size:27 final size:27
Alignment explanation
Indices: 20103821--20104002 Score: 120
Period size: 27 Copynumber: 6.7 Consensus size: 27
20103811 CTTAGGTTTA
* * ** * *
20103821 CAAAATTAATGAAATACCGTTGGTTTA
1 CAAAATTACTGAAATACCCTCAGCTTG
20103848 CAAAATTACTGAAATACCCTC-GACTTG
1 CAAAATTACTGAAATACCCTCAG-CTTG
* * * *
20103875 TAAAATTACCGAAGTACCGC-CAGTTTG
1 CAAAATTACTGAAATACC-CTCAGCTTG
*
20103902 CAAAATTACTGAAATACCCTCAGTTTG
1 CAAAATTACTGAAATACCCTCAGCTTG
* * *
20103929 CAAAATTAC-CAAAGTACCC-CTAGTTTA
1 CAAAATTACTGAAA-TACCCTC-AGCTTG
* * * *
20103956 CAAAGTTACCGAAATACCCTTAGTTTG
1 CAAAATTACTGAAATACCCTCAGCTTG
* *
20103983 GAAAATTACTAAAATACCCT
1 CAAAATTACTGAAATACCCT
20104003 TATATGGTAA
Statistics
Matches: 125, Mismatches: 22, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
26 6 0.05
27 114 0.91
28 5 0.04
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.28
Consensus pattern (27 bp):
CAAAATTACTGAAATACCCTCAGCTTG
Found at i:20104001 original size:54 final size:53
Alignment explanation
Indices: 20103843--20104001 Score: 185
Period size: 54 Copynumber: 3.0 Consensus size: 53
20103833 AATACCGTTG
* * * *
20103843 GTTTACAAAATTACTGAAATACCC-TCGACTTGTAAAATTACCGAAGTACCGCCA
1 GTTTACAAAATTACTGAAATACCCTTAG-TTTGCAAAATTACCAAAGTACC-CCA
* *
20103897 GTTTGCAAAATTACTGAAATACCCTCAGTTTGCAAAATTACCAAAGTACCCCTA
1 GTTTACAAAATTACTGAAATACCCTTAGTTTGCAAAATTACCAAAGTACCCC-A
* * * * *
20103951 GTTTACAAAGTTACCGAAATACCCTTAGTTTGGAAAATTACTAAAATACCC
1 GTTTACAAAATTACTGAAATACCCTTAGTTTGCAAAATTACCAAAGTACCC
20104002 TTATATGGTA
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 2 0.02
54 87 0.97
55 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.28
Consensus pattern (53 bp):
GTTTACAAAATTACTGAAATACCCTTAGTTTGCAAAATTACCAAAGTACCCCA
Found at i:20104003 original size:27 final size:27
Alignment explanation
Indices: 20103896--20104004 Score: 128
Period size: 27 Copynumber: 4.0 Consensus size: 27
20103886 AAGTACCGCC
** *
20103896 AGTTTGCAAAATTACTGAAATACCCTC
1 AGTTTGCAAAATTACCAAAATACCCTT
* *
20103923 AGTTTGCAAAATTACCAAAGTACCCCT
1 AGTTTGCAAAATTACCAAAATACCCTT
* * *
20103950 AGTTTACAAAGTTACCGAAATACCCTT
1 AGTTTGCAAAATTACCAAAATACCCTT
* *
20103977 AGTTTGGAAAATTACTAAAATACCCTT
1 AGTTTGCAAAATTACCAAAATACCCTT
20104004 A
1 A
20104005 TATGGTAAAA
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (27 bp):
AGTTTGCAAAATTACCAAAATACCCTT
Found at i:20104257 original size:26 final size:26
Alignment explanation
Indices: 20104219--20104286 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
20104209 GGAAGTGTTG
** *
20104219 TTACTGGTGGCTTTGCCACATATACTG
1 TTACTGGCAGCTTTGCCACAT-TACTA
** *
20104246 TT-CTGGCAGCTTTGCTGCATTATTA
1 TTACTGGCAGCTTTGCCACATTACTA
20104271 TTACTGGCAGCTTTGC
1 TTACTGGCAGCTTTGC
20104287 TGCAATATTG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
25 5 0.15
26 27 0.79
27 2 0.06
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCCACATTACTA
Found at i:20104485 original size:27 final size:27
Alignment explanation
Indices: 20104447--20104502 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
20104437 TACTAATATG
* *
20104447 GTATTAGGCTAAGGCCCACCTTGTTCT
1 GTATTAGGCTAAAGCCCACATTGTTCT
*
20104474 GTATTGGGCTAAAGCCCACATTGTTCT
1 GTATTAGGCTAAAGCCCACATTGTTCT
20104501 GT
1 GT
20104503 TCTGTTATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (27 bp):
GTATTAGGCTAAAGCCCACATTGTTCT
Found at i:20105284 original size:27 final size:27
Alignment explanation
Indices: 20105246--20105368 Score: 185
Period size: 27 Copynumber: 4.6 Consensus size: 27
20105236 GGGGTGTTAC
* *
20105246 AGGGTAAAATGACTGAACTACCCCCAT
1 AGGGTAAAATGACTGAAATACCCTCAT
20105273 AGGGTAAAATGA-TCGAAATACCCTCAT
1 AGGGTAAAATGACT-GAAATACCCTCAT
*
20105300 AGGGTAAAATGACCGAAATACCCTCAT
1 AGGGTAAAATGACTGAAATACCCTCAT
* *
20105327 AGCGTAAAATGACCGAAATACCCTCAT
1 AGGGTAAAATGACTGAAATACCCTCAT
20105354 AGGGTAAAATGACTG
1 AGGGTAAAATGACTG
20105369 TTATGGCATT
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
26 1 0.01
27 87 0.99
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.20
Consensus pattern (27 bp):
AGGGTAAAATGACTGAAATACCCTCAT
Found at i:20107202 original size:57 final size:57
Alignment explanation
Indices: 20107134--20107248 Score: 194
Period size: 57 Copynumber: 2.0 Consensus size: 57
20107124 TCATAGGTAT
20107134 GTATGTGCATTAACACATTTGCTTATTAAAACTTGTTTAATCGGTTGAATTGACATA
1 GTATGTGCATTAACACATTTGCTTATTAAAACTTGTTTAATCGGTTGAATTGACATA
* * * *
20107191 GTATGTGCATTAACTCATTTTCTTATTAAAATTTGTTTAATCGGTTGAATTGATATA
1 GTATGTGCATTAACACATTTGCTTATTAAAACTTGTTTAATCGGTTGAATTGACATA
20107248 G
1 G
20107249 AGATATAGTC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.43
Consensus pattern (57 bp):
GTATGTGCATTAACACATTTGCTTATTAAAACTTGTTTAATCGGTTGAATTGACATA
Found at i:20107568 original size:15 final size:13
Alignment explanation
Indices: 20107535--20107559 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20107525 GTGTGTTTAA
20107535 AATTGTCACTTTT
1 AATTGTCACTTTT
20107548 AATTGTCACTTT
1 AATTGTCACTTT
20107560 ATTACTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.08, T:0.52
Consensus pattern (13 bp):
AATTGTCACTTTT
Found at i:20116425 original size:50 final size:50
Alignment explanation
Indices: 20116314--20116554 Score: 349
Period size: 50 Copynumber: 4.8 Consensus size: 50
20116304 GATAATAACA
* ** *
20116314 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
* * *
20116365 TGCCCATGCCATGTCCCAGACATGGTTTTAC-GGAGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATG-GGACCTCTCATCTCGG
* *
20116415 TGCCAATGCCATGCCCCAGACATGGTCTTACATGGGACCTCTCATCTCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
20116465 AGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
20116515 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT
20116555 TTTTACCCAA
Statistics
Matches: 170, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
50 137 0.81
51 33 0.19
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.24
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:20127841 original size:20 final size:20
Alignment explanation
Indices: 20127816--20127856 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
20127806 CTCTTGAGAA
20127816 AAGTTATATTTCAGGCGTAT
1 AAGTTATATTTCAGGCGTAT
20127836 AAGTTATATTTCAGGCGTAT
1 AAGTTATATTTCAGGCGTAT
20127856 A
1 A
20127857 GATTGAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (20 bp):
AAGTTATATTTCAGGCGTAT
Found at i:20129086 original size:17 final size:17
Alignment explanation
Indices: 20129064--20129096 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
20129054 ATTCTTTGAT
20129064 AATTGCCAC-AGCATTTC
1 AATTGCC-CTAGCATTTC
20129081 AATTGCCCTAGCATTT
1 AATTGCCCTAGCATTT
20129097 TTTCATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.33
Consensus pattern (17 bp):
AATTGCCCTAGCATTTC
Found at i:20132761 original size:27 final size:26
Alignment explanation
Indices: 20132730--20132814 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 26
20132720 ATTCGTGGGC
* *
20132730 AAATGATCGAATTACCTGCGAAGGGTA
1 AAATGACCGAATTACCT-CAAAGGGTA
*
20132757 AAATGACCGAGA-TACC-CTATTAGGGTA
1 AAATGACCGA-ATTACCTC-A-AAGGGTA
*
20132784 AAATGACCGAATTACCTCCAAAAGGTA
1 AAATGACCGAATTACCT-CAAAGGGTA
20132811 AAAT
1 AAAT
20132815 TATCGAAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
25 1 0.02
26 1 0.02
27 42 0.89
28 2 0.04
29 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.21
Consensus pattern (26 bp):
AAATGACCGAATTACCTCAAAGGGTA
Found at i:20132837 original size:27 final size:27
Alignment explanation
Indices: 20132807--20133030 Score: 267
Period size: 27 Copynumber: 8.3 Consensus size: 27
20132797 ACCTCCAAAA
*
20132807 GGTAAAATTATCGAAATACCCTTGATG
1 GGTAAAATTATCGAAATACCCTCGATG
* *
20132834 GGTAAACTTA-CTGAAATACCCCCGATG
1 GGTAAAATTATC-GAAATACCCTCGATG
**
20132861 GGTAAAATTATTAAAATACCCTCGATG
1 GGTAAAATTATCGAAATACCCTCGATG
*
20132888 GGTAAAATTATCGAAATACCCTCGATA
1 GGTAAAATTATCGAAATACCCTCGATG
*
20132915 GGTAAAATTATTGAAATACCCTCGATG
1 GGTAAAATTATCGAAATACCCTCGATG
*
20132942 GGTAAAATTATCGAAATACCC-CTGAAG
1 GGTAAAATTATCGAAATACCCTC-GATG
* * *
20132969 GGTAAAATGA-CTGAAATACCCTCAATA
1 GGTAAAATTATC-GAAATACCCTCGATG
* *
20132996 GGTAAAATTATCGAGATACCCT-TATAG
1 GGTAAAATTATCGAAATACCCTCGAT-G
20133023 GGTAAAAT
1 GGTAAAAT
20133031 GACTGTTATA
Statistics
Matches: 168, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
26 5 0.03
27 161 0.96
28 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.26
Consensus pattern (27 bp):
GGTAAAATTATCGAAATACCCTCGATG
Found at i:20133004 original size:54 final size:54
Alignment explanation
Indices: 20132749--20133035 Score: 257
Period size: 54 Copynumber: 5.3 Consensus size: 54
20132739 AATTACCTGC
* * * * *
20132749 GAAGGGTAAAATGACCGAGATACCCT--ATTAGGGTAAAATGACCGAATTACCTCC-
1 GAAGGGTAAAATGACTGAAATACCCTCGA-T-GGGTAAAATTATCGAAATACC-CCT
* * * * * *
20132803 AAAAGGTAAAATTA-TCGAAATACCCTTGATGGGTAAACTTA-CTGAAATACCCCC
1 GAAGGGTAAAATGACT-GAAATACCCTCGATGGGTAAAATTATC-GAAATACCCCT
* * * *
20132857 GATGGGTAAAATTATTAAAATACCCTCGATGGGTAAAATTATCGAAATA-CCCT
1 GAAGGGTAAAATGACTGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCT
* *
20132910 CGATA-GGTAAAATTATTGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCT
1 -GA-AGGGTAAAATGACTGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCT
* * *
20132965 GAAGGGTAAAATGACTGAAATACCCTCAATAGGTAAAATTATCGAGATA-CCCT
1 GAAGGGTAAAATGACTGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCT
*
20133018 TATAGGGTAAAATGACTG
1 GA-AGGGTAAAATGACTG
20133036 TTATACCCCT
Statistics
Matches: 198, Mismatches: 23, Indels: 24
0.81 0.09 0.10
Matches are distributed among these distances:
53 12 0.06
54 178 0.90
55 7 0.04
56 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.25
Consensus pattern (54 bp):
GAAGGGTAAAATGACTGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCT
Found at i:20133041 original size:27 final size:27
Alignment explanation
Indices: 20132967--20133062 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 27
20132957 ATACCCCTGA
* *
20132967 AGGGTAAAATGACTGAAATACCCTCAAT
1 AGGGTAAAATGACTGATATACCCT-TAT
* *
20132995 A-GGTAAAATTA-TCGAGATACCCTTAT
1 AGGGTAAAATGACT-GATATACCCTTAT
* *
20133021 AGGGTAAAATGACTGTTATACCCCTA-
1 AGGGTAAAATGACTGATATACCCTTAT
*
20133047 AGAGATAAAATGACTG
1 AG-GGTAAAATGACTG
20133063 TTATGGCCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
26 6 0.11
27 48 0.86
28 2 0.04
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.25
Consensus pattern (27 bp):
AGGGTAAAATGACTGATATACCCTTAT
Found at i:20133042 original size:81 final size:80
Alignment explanation
Indices: 20132779--20133062 Score: 236
Period size: 81 Copynumber: 3.5 Consensus size: 80
20132769 TACCCTATTA
* * * * * ** * *
20132779 GGGTAAAATGACCGAATTACCTCCAAAAGGTAAAATTA-TCGAAATACCCTTGATGGGTAAACTT
1 GGGTAAAATGATCGAAATACC-CCTAAGGGTAAAATGACT-GAAATACCCTCAATAGGTAAAATT
*
20132843 A-CTGAAATACCCCCGAT
64 ATC-GAAATACCCTCGAT
* ** * * * *
20132860 GGGTAAAATTATTAAAATACCCTCGATGGGTAAAATTA-TCGAAATACCCTCGATAGGTAAAATT
1 GGGTAAAATGATCGAAATACCC-CTAAGGGTAAAATGACT-GAAATACCCTCAATAGGTAAAATT
*
20132924 ATTGAAATACCCTCGAT
64 ATCGAAATACCCTCGAT
*
20132941 GGGTAAAATTATCGAAATACCCCTGAAGGGTAAAATGACTGAAATACCCTCAATAGGTAAAATTA
1 GGGTAAAATGATCGAAATACCCCT-AAGGGTAAAATGACTGAAATACCCTCAATAGGTAAAATTA
* *
20133006 TCGAGATACCCT-TAT
65 TCGAAATACCCTCGAT
** *
20133021 AGGGTAAAATGA-CTGTTATACCCCTAAGAGATAAAATGACTG
1 -GGGTAAAATGATC-GAAATACCCCTAAG-GGTAAAATGACTG
20133063 TTATGGCCTT
Statistics
Matches: 170, Mismatches: 26, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
80 8 0.05
81 161 0.95
82 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (80 bp):
GGGTAAAATGATCGAAATACCCCTAAGGGTAAAATGACTGAAATACCCTCAATAGGTAAAATTAT
CGAAATACCCTCGAT
Found at i:20133056 original size:54 final size:54
Alignment explanation
Indices: 20132846--20133057 Score: 175
Period size: 54 Copynumber: 3.9 Consensus size: 54
20132836 TAAACTTACT
* * * * * * *
20132846 GAAATACCCCCGATGGGTAAAATTATTAAAATACCCTCGATG-GGTAAAATTATC
1 GAAATACCCCTGAAGGGTAAAATGACTGAAATACCCTC-AAGAGATAAAATTATC
* * * *
20132900 GAAATA-CCCTCGATA-GGTAAAATTATTGAAATACCCTCGATG-GGTAAAATTATC
1 GAAATACCCCT-GA-AGGGTAAAATGACTGAAATACCCTC-AAGAGATAAAATTATC
* *
20132954 GAAATACCCCTGAAGGGTAAAATGACTGAAATACCCTCAATAGGTAAAATTATC
1 GAAATACCCCTGAAGGGTAAAATGACTGAAATACCCTCAAGAGATAAAATTATC
* * **
20133008 GAGATA-CCCTTATAGGGTAAAATGACTGTTATACCC-CTAAGAGATAAAAT
1 GAAATACCCCTGA-AGGGTAAAATGACTGAAATACCCTC-AAGAGATAAAAT
20133058 GACTGTTATG
Statistics
Matches: 138, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
53 11 0.08
54 123 0.89
55 4 0.03
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.25
Consensus pattern (54 bp):
GAAATACCCCTGAAGGGTAAAATGACTGAAATACCCTCAAGAGATAAAATTATC
Found at i:20133346 original size:26 final size:26
Alignment explanation
Indices: 20133267--20133347 Score: 74
Period size: 26 Copynumber: 3.1 Consensus size: 26
20133257 TTTGCCACAT
* *
20133267 ATACTGTTACTGGCAGCTTTGTTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
* * * *
20133293 ATACTGATACTAGCAGCTCTACTACG
1 ATACTGATACTGGCAGCTTTGCTGCG
* *
20133319 ATGCT-ATTGCTGGCAGCTTTGCTGCG
1 ATACTGA-TACTGGCAGCTTTGCTGCG
20133345 ATA
1 ATA
20133348 TTGGTGTGTT
Statistics
Matches: 41, Mismatches: 13, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
25 1 0.02
26 40 0.98
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.33
Consensus pattern (26 bp):
ATACTGATACTGGCAGCTTTGCTGCG
Found at i:20135295 original size:17 final size:20
Alignment explanation
Indices: 20135259--20135297 Score: 57
Period size: 17 Copynumber: 2.1 Consensus size: 20
20135249 ACGCAAGTTC
20135259 TTTTAGCCTAGATCTAATTG
1 TTTTAGCCTAGATCTAATTG
20135279 TTTTA-CCTA-AT-TAATTG
1 TTTTAGCCTAGATCTAATTG
20135296 TT
1 TT
20135298 GATGTAGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 2 0.11
19 4 0.21
20 5 0.26
ACGTcount: A:0.26, C:0.13, G:0.10, T:0.51
Consensus pattern (20 bp):
TTTTAGCCTAGATCTAATTG
Found at i:20137397 original size:40 final size:40
Alignment explanation
Indices: 20137343--20137451 Score: 105
Period size: 40 Copynumber: 2.7 Consensus size: 40
20137333 AGGAGTACGA
* * * *
20137343 ATGTGCGATT-AGGGGTGCCAAAGTGC-AATCAGGGGCATAG
1 ATGTGC-ATTCAGGGGTACCAAAGTACAAAT-AGGGGAACAG
* *
20137383 ATGTGCCTTCAGGGGTACCGAAGTACAAATAGGGGAACAG
1 ATGTGCATTCAGGGGTACCAAAGTACAAATAGGGGAACAG
* * *
20137423 ATGTGCATTTAGGGGTATCGAAGTACAAA
1 ATGTGCATTCAGGGGTACCAAAGTACAAA
20137452 AAAAAGGGTA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
39 2 0.03
40 53 0.91
41 3 0.05
ACGTcount: A:0.31, C:0.15, G:0.33, T:0.21
Consensus pattern (40 bp):
ATGTGCATTCAGGGGTACCAAAGTACAAATAGGGGAACAG
Found at i:20137416 original size:20 final size:20
Alignment explanation
Indices: 20137393--20137451 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 20
20137383 ATGTGCCTTC
20137393 AGGGGTACCGAAGTACAAAT
1 AGGGGTACCGAAGTACAAAT
* * * * **
20137413 AGGGGAACAGATGTGCATTT
1 AGGGGTACCGAAGTACAAAT
*
20137433 AGGGGTATCGAAGTACAAA
1 AGGGGTACCGAAGTACAAA
20137452 AAAAAGGGTA
Statistics
Matches: 26, Mismatches: 13, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.12, G:0.32, T:0.19
Consensus pattern (20 bp):
AGGGGTACCGAAGTACAAAT
Found at i:20143134 original size:40 final size:39
Alignment explanation
Indices: 20143090--20143204 Score: 142
Period size: 40 Copynumber: 2.9 Consensus size: 39
20143080 AGGAGCACGA
* * *
20143090 ATGTGCGATTAGGGGTACCAAAGTGC-AATCAGGGGCATAG
1 ATGTGC-ATTAGGGGTACCGAAGTACAAAT-AGGGGCACAG
*
20143130 ATGTGCCTTTAGGGGTACCGAAGTACAAATAGGGGCACAG
1 ATGTG-CATTAGGGGTACCGAAGTACAAATAGGGGCACAG
*
20143170 ATGTGCATTTAGGGGTACCGAAGTACAAAAAGGGG
1 ATGTGCA-TTAGGGGTACCGAAGTACAAATAGGGG
20143205 TACTTATTCA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
39 1 0.02
40 61 0.92
41 4 0.06
ACGTcount: A:0.31, C:0.15, G:0.34, T:0.20
Consensus pattern (39 bp):
ATGTGCATTAGGGGTACCGAAGTACAAATAGGGGCACAG
Found at i:20143162 original size:20 final size:20
Alignment explanation
Indices: 20143139--20143207 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 20
20143129 GATGTGCCTT
20143139 TAGGGGTACCGAAGTACAAA
1 TAGGGGTACCGAAGTACAAA
* * * * **
20143159 TAGGGGCACAGATGTGCATT
1 TAGGGGTACCGAAGTACAAA
20143179 TAGGGGTACCGAAGTACAAA
1 TAGGGGTACCGAAGTACAAA
*
20143199 AAGGGGTAC
1 TAGGGGTAC
20143208 TTATTCATTT
Statistics
Matches: 36, Mismatches: 13, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.35, C:0.14, G:0.33, T:0.17
Consensus pattern (20 bp):
TAGGGGTACCGAAGTACAAA
Found at i:20148270 original size:51 final size:50
Alignment explanation
Indices: 20148193--20148334 Score: 167
Period size: 51 Copynumber: 2.8 Consensus size: 50
20148183 AAACACCGTT
* *
20148193 TGTGGACATGCCACCACTGATTTGCAGATAAACTACCACTGATAACATTGA
1 TGTGGACAAGCCACCACTGATTTGCAGATATACTACCACTGATAACATT-A
* * * * ***
20148244 TGTGGACAAGCCACCATTGATATGCAGATTTACTGCCACTGATTTGATTA
1 TGTGGACAAGCCACCACTGATTTGCAGATATACTACCACTGATAACATTA
* **
20148294 TGTGGACTAGCCACCACTGATTTATAGATATACTACCACTG
1 TGTGGACAAGCCACCACTGATTTGCAGATATACTACCACTG
20148335 CTTCCACCTT
Statistics
Matches: 75, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
50 35 0.47
51 40 0.53
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (50 bp):
TGTGGACAAGCCACCACTGATTTGCAGATATACTACCACTGATAACATTA
Found at i:20157392 original size:27 final size:26
Alignment explanation
Indices: 20157328--20157514 Score: 216
Period size: 27 Copynumber: 7.0 Consensus size: 26
20157318 AGACCCCAAA
**
20157328 ATAGGGTAAAATGATTGAAATACACCT
1 ATAGGGTAAAATGACCGAAATAC-CCT
*
20157355 A-A-GGTAAAATGATCGAAATACGCCT
1 ATAGGGTAAAATGACCGAAATAC-CCT
* *
20157380 ATAAGGTAAAATGACCGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATA-CCCT
*
20157407 ATAGGGTAAAATGACCAAAATACCCT
1 ATAGGGTAAAATGACCGAAATACCCT
* *
20157433 CATAGGGTAAAACGACCGAAATACCCCC
1 -ATAGGGTAAAATGACCGAAATA-CCCT
*
20157461 ATAGGGTAAAATGAACGAAATACCCT
1 ATAGGGTAAAATGACCGAAATACCCT
*
20157487 CATAGGGTAAAATGACCAAAATACCCT
1 -ATAGGGTAAAATGACCGAAATACCCT
20157514 A
1 A
20157515 GGAAATGAAA
Statistics
Matches: 139, Mismatches: 15, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
25 22 0.16
26 9 0.06
27 104 0.75
28 4 0.03
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.18
Consensus pattern (26 bp):
ATAGGGTAAAATGACCGAAATACCCT
Found at i:20157442 original size:54 final size:54
Alignment explanation
Indices: 20157328--20157512 Score: 250
Period size: 54 Copynumber: 3.5 Consensus size: 54
20157318 AGACCCCAAA
** * * *
20157328 ATAGGGTAAAATGATTGAAATA-CACC-TAAGGTAAAATGATCGAAATACGCCT-
1 ATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAACGAAATAC-CCTC
* * *
20157380 ATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCAAAATACCCTC
1 ATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAACGAAATACCCTC
*
20157434 ATAGGGTAAAACGACCGAAATACCCCCATAGGGTAAAATGAACGAAATACCCTC
1 ATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAACGAAATACCCTC
*
20157488 ATAGGGTAAAATGACCAAAATACCC
1 ATAGGGTAAAATGACCGAAATACCC
20157513 TAGGAAATGA
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
52 19 0.16
53 6 0.05
54 92 0.79
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.18
Consensus pattern (54 bp):
ATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAACGAAATACCCTC
Found at i:20157456 original size:81 final size:78
Alignment explanation
Indices: 20157328--20157514 Score: 248
Period size: 81 Copynumber: 2.3 Consensus size: 78
20157318 AGACCCCAAA
*** * * * *
20157328 ATAGGGTAAAATGATTGAAATACACCTAAGGTAAAATGATCGAAATACGCCTATAAGGTAAAATG
1 ATAGGGTAAAATGACCAAAATAC-CCTAAGGTAAAACGACCGAAATACCCCCATAAGGTAAAATG
*
20157393 ACCGAAATACCCCC
65 AACGAAATACCCCC
*
20157407 ATAGGGTAAAATGACCAAAATACCCTCATAGGGTAAAACGACCGAAATACCCCCATAGGGTAAAA
1 ATAGGGTAAAATGACCAAAATACCCT-A-A-GGTAAAACGACCGAAATACCCCCATAAGGTAAAA
*
20157472 TGAACGAAATACCCTC
63 TGAACGAAATACCCCC
20157488 ATAGGGTAAAATGACCAAAATACCCTA
1 ATAGGGTAAAATGACCAAAATACCCTA
20157515 GGAAATGAAA
Statistics
Matches: 95, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.03
79 21 0.22
80 2 0.02
81 69 0.73
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.18
Consensus pattern (78 bp):
ATAGGGTAAAATGACCAAAATACCCTAAGGTAAAACGACCGAAATACCCCCATAAGGTAAAATGA
ACGAAATACCCCC
Found at i:20158309 original size:13 final size:14
Alignment explanation
Indices: 20158291--20158320 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
20158281 CACAACCACA
20158291 TTAGCTT-TCATTT
1 TTAGCTTCTCATTT
20158304 TTAGCTTCTCATTT
1 TTAGCTTCTCATTT
20158318 TTA
1 TTA
20158321 TGTAAAAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.17, C:0.17, G:0.07, T:0.60
Consensus pattern (14 bp):
TTAGCTTCTCATTT
Found at i:20160749 original size:10 final size:11
Alignment explanation
Indices: 20160713--20160758 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
20160703 AAAGCAAGCA
20160713 TTTTCATTAAG
1 TTTTCATTAAG
* *
20160724 TTTTAATTATG
1 TTTTCATTAAG
20160735 TTTTCA-TAAG
1 TTTTCATTAAG
20160745 TTTTC-TTAAAG
1 TTTTCATT-AAG
20160756 TTT
1 TTT
20160759 AAAAAATGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 9 0.31
11 20 0.69
ACGTcount: A:0.26, C:0.07, G:0.09, T:0.59
Consensus pattern (11 bp):
TTTTCATTAAG
Found at i:20169721 original size:35 final size:34
Alignment explanation
Indices: 20169663--20169764 Score: 114
Period size: 35 Copynumber: 2.9 Consensus size: 34
20169653 TTAGTTGGAC
**
20169663 TAGCTCTTATGAGCATTAATGTGTTTCGGAGGTAA
1 TAGCTCTTATGAGCATTGGTGTGTTTCGGAGG-AA
* ** *
20169698 TAGCTCTTATGAGCATCGGTGTGTTTCAGTTGGAC
1 TAGCTCTTATGAGCATTGGTGTGTTTC-GGAGGAA
* *
20169733 TAGCTCTTATAAGCATTGGTGTGTTTTGGAGG
1 TAGCTCTTATGAGCATTGGTGTGTTTCGGAGG
20169765 GATTGGCTCG
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
34 3 0.05
35 49 0.89
36 3 0.05
ACGTcount: A:0.21, C:0.13, G:0.28, T:0.38
Consensus pattern (34 bp):
TAGCTCTTATGAGCATTGGTGTGTTTCGGAGGAA
Found at i:20176931 original size:22 final size:22
Alignment explanation
Indices: 20176903--20176945 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
20176893 TTTATTGTTC
20176903 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTG
20176925 AAACATGAGAGCTTAGTACGT
1 AAACATGAGAGCTTAGTACGT
20176946 TAGCCATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTG
Found at i:20190632 original size:44 final size:44
Alignment explanation
Indices: 20190540--20190633 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
20190530 GGGACCAAGG
* * * * **
20190540 TGAAAACCCGTAAAGGGCGCTTTGAGTCAAAAAAAAGATTAAGG
1 TGAAAACCCGCAAAAGGCACTTTGAGTCAAAAAAAAGATGAAAA
* *
20190584 TGAAAACCCGCAAAATGCACTTTGAGTCAAAAAAATGATGAAAA
1 TGAAAACCCGCAAAAGGCACTTTGAGTCAAAAAAAAGATGAAAA
20190628 TGAAAA
1 TGAAAA
20190634 AATGGAAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.18
Consensus pattern (44 bp):
TGAAAACCCGCAAAAGGCACTTTGAGTCAAAAAAAAGATGAAAA
Found at i:20191943 original size:44 final size:44
Alignment explanation
Indices: 20191880--20192094 Score: 288
Period size: 44 Copynumber: 4.9 Consensus size: 44
20191870 AAATCACAAA
*
20191880 TCCTATCTCCCTGAACAGCAGTGGAATAGCTGGAAGATTGTAAG
1 TCCTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
* *
20191924 TCCTATCTCCCTGAACAGCAGTGGAATAGGTTGAAGATTGCATA-
1 TCCTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTA-AG
*
20191968 TCCTATCTCCCTGAACAGCAGCGGAATAGGTGGAAGATTGTAAG
1 TCCTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
* * * * *
20192012 CCCTATCTCCCTAAACAACAGTGGAAGAGGTTGAAGATTGTAAG
1 TCCTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
* * * * *
20192056 TCATATCTCCCTGGACAGCACTGGAATTGGTTGAAGATT
1 TCCTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATT
20192095 TGAAGTAGAT
Statistics
Matches: 149, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
43 1 0.01
44 147 0.99
45 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
TCCTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
Found at i:20192317 original size:45 final size:45
Alignment explanation
Indices: 20192179--20192324 Score: 116
Period size: 45 Copynumber: 3.3 Consensus size: 45
20192169 CCTATGTTTC
* * *
20192179 CAGCGGAGTAGACTGAAGAAAGTAGATCTTGCCTTCCTGTACTGA
1 CAGCGAAGCAGACTGAAGAAAGTAGATCTTGCCTTCCTGTACTAA
* * ** * * *** **
20192224 CAGCGAAGCAG-GTCGAAGACACCAG-CCTTGCCTCCCTGGGTTTC
1 CAGCGAAGCAGACT-GAAGAAAGTAGATCTTGCCTTCCTGTACTAA
* * *
20192268 CAGCGGAGCAGACTAAAGATAGTAGATCTTGCCTTCCTGTACTAA
1 CAGCGAAGCAGACTGAAGAAAGTAGATCTTGCCTTCCTGTACTAA
20192313 CAGCGAAGCAGA
1 CAGCGAAGCAGA
20192325 TCGAAGACAC
Statistics
Matches: 71, Mismatches: 27, Indels: 6
0.68 0.26 0.06
Matches are distributed among these distances:
44 30 0.42
45 41 0.58
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21
Consensus pattern (45 bp):
CAGCGAAGCAGACTGAAGAAAGTAGATCTTGCCTTCCTGTACTAA
Found at i:20192348 original size:89 final size:89
Alignment explanation
Indices: 20192157--20192350 Score: 280
Period size: 89 Copynumber: 2.2 Consensus size: 89
20192147 TTGAAAATAA
* ** * *
20192157 CAGCCGTACCTCCCTATGTTTCCAGCGGAGTAGACTGAAGAAAGTAGATCTTGCCTTCCTGTACT
1 CAGCCTTACCTCCCTGGGTTTCCAGCGGAGCAGACTAAAGAAAGTAGATCTTGCCTTCCTGTACT
* *
20192222 GACAGCGAAGCAGGTCGAAGACAC
66 AACAGCGAAGCAGATCGAAGACAC
* *
20192246 CAGCCTTGCCTCCCTGGGTTTCCAGCGGAGCAGACTAAAGATAGTAGATCTTGCCTTCCTGTACT
1 CAGCCTTACCTCCCTGGGTTTCCAGCGGAGCAGACTAAAGAAAGTAGATCTTGCCTTCCTGTACT
20192311 AACAGCGAAGCAGATCGAAGACAC
66 AACAGCGAAGCAGATCGAAGACAC
* * *
20192335 CGGCGTTATCTCCCTG
1 CAGCCTTACCTCCCTG
20192351 ATGTTACAGT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
89 92 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (89 bp):
CAGCCTTACCTCCCTGGGTTTCCAGCGGAGCAGACTAAAGAAAGTAGATCTTGCCTTCCTGTACT
AACAGCGAAGCAGATCGAAGACAC
Found at i:20195702 original size:153 final size:153
Alignment explanation
Indices: 20195424--20195729 Score: 549
Period size: 153 Copynumber: 2.0 Consensus size: 153
20195414 ACAAGTACTT
* *
20195424 TTCCTCTCAGTCTCACTACTCAGTACAAGTATACCAAACTATCAAGAAGAAACTCTCCTTTCGGT
1 TTCCTCTCAGTCTCACTACTCAATACAAGTATACCAAACTATCAAGAAGAAACTCTCCTCTCGGT
* *
20195489 CTCGTTTATCTAGATTTTCCGCTAGAGGTGTTAATTCTAGCACATTAAATATTTTGATATAATCA
66 CTCGTTTATCTAGATTTTCCACTAGAGGTGTTAATTCTAGCACATTAAACATTTTGATATAATCA
20195554 AACAATCAATTAATCAAGAATAA
131 AACAATCAATTAATCAAGAATAA
20195577 TTCCTCTCAGTCTCACTACTCAATACAAGTATACCAAACTATCAAGAAGAAACTCTCCTCTCGGT
1 TTCCTCTCAGTCTCACTACTCAATACAAGTATACCAAACTATCAAGAAGAAACTCTCCTCTCGGT
* * *
20195642 CTCGTTTATTTAGATTTTCCACTAGAGGTGTTAATTCTAGCATATTAAGCATTTTGATATAATCA
66 CTCGTTTATCTAGATTTTCCACTAGAGGTGTTAATTCTAGCACATTAAACATTTTGATATAATCA
20195707 AACAATCAATTAATCAAGAATAA
131 AACAATCAATTAATCAAGAATAA
20195730 ATGTTTACTT
Statistics
Matches: 146, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
153 146 1.00
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (153 bp):
TTCCTCTCAGTCTCACTACTCAATACAAGTATACCAAACTATCAAGAAGAAACTCTCCTCTCGGT
CTCGTTTATCTAGATTTTCCACTAGAGGTGTTAATTCTAGCACATTAAACATTTTGATATAATCA
AACAATCAATTAATCAAGAATAA
Found at i:20198804 original size:13 final size:13
Alignment explanation
Indices: 20198779--20198832 Score: 81
Period size: 13 Copynumber: 4.2 Consensus size: 13
20198769 ACATATAAAG
*
20198779 CATAACTTCAAAA
1 CATAACTTGAAAA
*
20198792 CATGACTTGAAAA
1 CATAACTTGAAAA
*
20198805 CATAACTTGAGAA
1 CATAACTTGAAAA
20198818 CATAACTTGAAAA
1 CATAACTTGAAAA
20198831 CA
1 CA
20198833 GAGTTTATAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.50, C:0.19, G:0.09, T:0.22
Consensus pattern (13 bp):
CATAACTTGAAAA
Found at i:20199318 original size:205 final size:205
Alignment explanation
Indices: 20198904--20199319 Score: 683
Period size: 205 Copynumber: 2.0 Consensus size: 205
20198894 GAGCAGTTCG
* * * *
20198904 CACACAAATAATGAACGCTTTAAAAACCAAGATTTCTATAAATTTTAGTGGTTTACACATACAAA
1 CACACAAATAACGAACCCTTTAAAAACCAAGATTTCTATAAATTTTAATGGTTTACAAATACAAA
* *
20198969 TGGTGGCCCAAAAAACTCACCAAAAAGCTGAGAATTTTAAATGAGATTTTTTTTCCTTTATGCTT
66 TGGTGGCACAAAAAACTCACCAAAAAGCTCAGAATTTTAAATGAGATTTTTTTTCCTTTATGCTT
*
20199034 GTTGGTAGATGGTCCAGCTGATTCACAACATACACAAATACACAGATTACTTAAACAAACAAAAG
131 GTTGGTAGATGGTCCAGCTGATTCACAACATACACAAATACACAGATTACTTAAACAAACAAAAC
* *
20199099 TTATAGATTT
196 TTACAGAGTT
* *
20199109 CACACAAATAACGAACCCTTTAATAACCAAGATTTCTATAAATTTTAATGGTTTATAAATACAAA
1 CACACAAATAACGAACCCTTTAAAAACCAAGATTTCTATAAATTTTAATGGTTTACAAATACAAA
*
20199174 TGGTGGCACAGAAAACTCACCAAAAAGCTCAGAATTTTAAATGAGATTTTATTTTCCTTTATGCT
66 TGGTGGCACAAAAAACTCACCAAAAAGCTCAGAATTTTAAATGAGATTTT-TTTTCCTTTATGCT
*
20199239 TGTTGGTAGATGGTCCAGTTGATTCACAACATACA-AGAATACACAGATTACTTAAACAAA-AAA
130 TGTTGGTAGATGGTCCAGCTGATTCACAACATACACA-AATACACAGATTACTTAAACAAACAAA
20199302 ACTTACAGAGTT
194 ACTTACAGAGTT
20199314 CACACA
1 CACACA
20199320 TGCAAGCGAA
Statistics
Matches: 196, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
205 125 0.64
206 71 0.36
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (205 bp):
CACACAAATAACGAACCCTTTAAAAACCAAGATTTCTATAAATTTTAATGGTTTACAAATACAAA
TGGTGGCACAAAAAACTCACCAAAAAGCTCAGAATTTTAAATGAGATTTTTTTTCCTTTATGCTT
GTTGGTAGATGGTCCAGCTGATTCACAACATACACAAATACACAGATTACTTAAACAAACAAAAC
TTACAGAGTT
Found at i:20201269 original size:48 final size:48
Alignment explanation
Indices: 20201186--20201311 Score: 135
Period size: 48 Copynumber: 2.6 Consensus size: 48
20201176 GGTCGCATAT
* * * * * * *
20201186 GTGGCAAGGACTGTGTGCAGGCCACCAATATTCTGTTAAGATACAAGG
1 GTGGCACGGACTGTGTGCAGGCCATCGAGAGTCTGTTAAGACACAAAG
* **
20201234 GTGGCACGGACTATGTGCAGGCCATCGAGAGTCTGTTATTACACAAAG
1 GTGGCACGGACTGTGTGCAGGCCATCGAGAGTCTGTTAAGACACAAAG
* * *
20201282 GTGGTACGAACTGTGTGTAGGCCATCGAGA
1 GTGGCACGGACTGTGTGCAGGCCATCGAGA
20201312 AATATGTTTT
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 64 1.00
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (48 bp):
GTGGCACGGACTGTGTGCAGGCCATCGAGAGTCTGTTAAGACACAAAG
Found at i:20205471 original size:50 final size:51
Alignment explanation
Indices: 20205292--20205473 Score: 188
Period size: 51 Copynumber: 3.6 Consensus size: 51
20205282 TGCCTATAAA
* * * * * * * *
20205292 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATAGATAATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGAACCGGAAAGCT-TTGAT
* * * * * *
20205343 CACATCTGTAGTACTATGTGCAGGCTACTATGTGTATCGGAATGCTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGAACCGGAAAGCTTTGAT
20205394 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGAACCGGAAAG-TTTGAT
1 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGAACCGGAAAGCTTTGAT
* * *
20205444 CACGTGTGTAGTAATATGTGAATGCTACTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTA
20205474 CATGTATCGA
Statistics
Matches: 113, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
50 32 0.28
51 77 0.68
52 4 0.04
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTATGTGAACCGGAAAGCTTTGAT
Found at i:20209641 original size:48 final size:48
Alignment explanation
Indices: 20209585--20209706 Score: 217
Period size: 48 Copynumber: 2.5 Consensus size: 48
20209575 GGTCGCATAT
*
20209585 GTGGCACGGACTGTGTGCAGGCCACCAATATTCTATTAAGATACAAGG
1 GTGGCACGGACTATGTGCAGGCCACCAATATTCTATTAAGATACAAGG
*
20209633 GTGGCACGGATTATGTGCAGGCCACCAATATTCTATTAAGATACAAGG
1 GTGGCACGGACTATGTGCAGGCCACCAATATTCTATTAAGATACAAGG
*
20209681 GTGGCACGGACTATGTGTAGGCCACC
1 GTGGCACGGACTATGTGCAGGCCACC
20209707 GAGAGTCTGT
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (48 bp):
GTGGCACGGACTATGTGCAGGCCACCAATATTCTATTAAGATACAAGG
Found at i:20209732 original size:48 final size:48
Alignment explanation
Indices: 20209585--20209766 Score: 202
Period size: 48 Copynumber: 3.8 Consensus size: 48
20209575 GGTCGCATAT
* * *
20209585 GTGGCACGGACTGTGTGCAGGCCACCAATATTCTATTAAGATACAAGG
1 GTGGCACGGACTATGTGCAGGCCACCAAGAGTCTATTAAGATACAAGG
* * *
20209633 GTGGCACGGATTATGTGCAGGCCACCAATATTCTATTAAGATACAAGG
1 GTGGCACGGACTATGTGCAGGCCACCAAGAGTCTATTAAGATACAAGG
* * * ** * *
20209681 GTGGCACGGACTATGTGTAGGCCACCGAGAGTCTGTTATTACACAAAG
1 GTGGCACGGACTATGTGCAGGCCACCAAGAGTCTATTAAGATACAAGG
* * * *
20209729 GTGGTACGGACTGTGTGTAGGCCACCGAGAAGTCTATT
1 GTGGCACGGACTATGTGCAGGCCACCAAG-AGTCTATT
20209767 TTTATTCCGA
Statistics
Matches: 118, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
48 111 0.94
49 7 0.06
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
GTGGCACGGACTATGTGCAGGCCACCAAGAGTCTATTAAGATACAAGG
Found at i:20212296 original size:18 final size:20
Alignment explanation
Indices: 20212256--20212296 Score: 50
Period size: 18 Copynumber: 2.1 Consensus size: 20
20212246 ATATAATTTT
*
20212256 AAAATATATATAATACATCA
1 AAAATATATATAAAACATCA
*
20212276 AAAATA-ATA-AAAACATTA
1 AAAATATATATAAAACATCA
20212294 AAA
1 AAA
20212297 TAAATATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 10 0.53
19 3 0.16
20 6 0.32
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAATATATATAAAACATCA
Found at i:20212833 original size:29 final size:29
Alignment explanation
Indices: 20212800--20212856 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
20212790 GGTCTACTGA
20212800 CGACCATCAAATATGAAAAGGGATGGTTT
1 CGACCATCAAATATGAAAAGGGATGGTTT
*
20212829 CGACCATCGAATATGAAAAGGGATGGTT
1 CGACCATCAAATATGAAAAGGGATGGTT
20212857 GGAAACACGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (29 bp):
CGACCATCAAATATGAAAAGGGATGGTTT
Found at i:20213621 original size:23 final size:25
Alignment explanation
Indices: 20213577--20213623 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
20213567 AACCATTCAT
20213577 TCTTCACTTCTCTCTCACTTTTCTC
1 TCTTCACTTCTCTCTCACTTTTCTC
20213602 TCTTCA-TTGCTCT-TCA-TTTTCT
1 TCTTCACTT-CTCTCTCACTTTTCT
20213624 TCCCCATTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 6 0.29
24 5 0.24
25 10 0.48
ACGTcount: A:0.09, C:0.34, G:0.02, T:0.55
Consensus pattern (25 bp):
TCTTCACTTCTCTCTCACTTTTCTC
Found at i:20217461 original size:19 final size:18
Alignment explanation
Indices: 20217408--20217462 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
20217398 CCAAATGCCT
*
20217408 TTAA-AATAATAACAAAA
1 TTAACAATAACAACAAAA
*
20217425 TTAACAAT-AGAACAAAAA
1 TTAACAATAACAAC-AAAA
20217443 TTATACAATAACAACAAAA
1 TTA-ACAATAACAACAAAA
20217462 T
1 T
20217463 AGTAACAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 8 0.25
18 10 0.31
19 10 0.31
20 4 0.12
ACGTcount: A:0.65, C:0.11, G:0.02, T:0.22
Consensus pattern (18 bp):
TTAACAATAACAACAAAA
Found at i:20220308 original size:20 final size:20
Alignment explanation
Indices: 20220267--20220308 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
20220257 TTACACCCCA
*
20220267 AAGAATCTGTCTACATCCCT
1 AAGAATCTGTCTACATCACT
*
20220287 AAGAATCTG-CTATATACACT
1 AAGAATCTGTCTACAT-CACT
20220307 AA
1 AA
20220309 TTTCATGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.29
Consensus pattern (20 bp):
AAGAATCTGTCTACATCACT
Found at i:20242552 original size:76 final size:75
Alignment explanation
Indices: 20242465--20242612 Score: 228
Period size: 76 Copynumber: 2.0 Consensus size: 75
20242455 GGAAAACCAT
20242465 GATTATTCCCTTATTAATAGAG-AAGACAAATGGAAAGTTAGAAAAAAAAAGTTATATTC-TCTC
1 GATTATTCCCTTATTAATAGAGAAAG-CAAATGGAAAGTTAGAAAAAAAAA-TTATATTCGT-TC
20242528 CAAAAGAATATAG
63 CAAAAGAATATAG
** *
20242541 GATTATTCCCTTATTAATAGAGAAAGCAAATGGAAAGTTAGAAAAATGAATTATATTCGTTTCAA
1 GATTATTCCCTTATTAATAGAGAAAGCAAATGGAAAGTTAGAAAAAAAAATTATATTCGTTCCAA
20242606 AAGAATA
66 AAGAATA
20242613 CTAACCTCTA
Statistics
Matches: 67, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
75 19 0.28
76 45 0.67
77 3 0.04
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (75 bp):
GATTATTCCCTTATTAATAGAGAAAGCAAATGGAAAGTTAGAAAAAAAAATTATATTCGTTCCAA
AAGAATATAG
Found at i:20242878 original size:83 final size:83
Alignment explanation
Indices: 20242781--20242951 Score: 281
Period size: 83 Copynumber: 2.1 Consensus size: 83
20242771 TTTTGATCGA
*
20242781 AATTAATTAATATAACTACTTATATTAATAAATTCAAAAAAATATATACAAAT-AATATTTTGTA
1 AATTAATTAATATAAATACTTATATTAATAAATTCAAAAAAATATATAC-AATGAATATTTTGTA
20242845 TGAATCAAATTCATATATT
65 TGAATCAAATTCATATATT
* * **
20242864 AATTAATTAATATAAATACTTATATTATTAACTTCAGTAAAATATATACAATGAATATTTTGTAT
1 AATTAATTAATATAAATACTTATATTAATAAATTCAAAAAAATATATACAATGAATATTTTGTAT
20242929 GAATCAAATTCATATATT
66 GAATCAAATTCATATATT
20242947 AATTA
1 AATTA
20242952 TATTCTTTTC
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
82 3 0.04
83 79 0.96
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.41
Consensus pattern (83 bp):
AATTAATTAATATAAATACTTATATTAATAAATTCAAAAAAATATATACAATGAATATTTTGTAT
GAATCAAATTCATATATT
Found at i:20243027 original size:221 final size:220
Alignment explanation
Indices: 20242644--20243089 Score: 642
Period size: 221 Copynumber: 2.0 Consensus size: 220
20242634 TTTTGACCGA
* ** * *
20242644 AATTAATTAATATAATTGTTTATATTAATAAATTCAATAAAATATATACATTTAATATTTTGTAT
1 AATTAATTAATATAAATACTTATATTAATAAATTCAATAAAATATATACAATGAATATTTTGTAT
*
20242709 AAATCAAATTCATATGTAATTATATTCTTTTCAAAAGAAAATTAATTTCCAAACCTTTTTTATTT
66 AAATCAAATTCATATGTAATTATATTCTTTTCAAAAGAAAATTAATTTCCAAACCTTTTATATTT
*
20242774 TGATCGAAATTAATTAATATAACTACTTATATTAATAAATTCAAAAAAATATATACAAATAATAT
131 TGACCGAAATTAATTAATATAACTACTTATATTAATAAATTCAAAAAAATATATACAAATAATAT
*
20242839 T-TTGTATGAATCAAATTCATATATT
196 TATT-TATAAATCAAATTCATATATT
* * *
20242864 AATTAATTAATATAAATACTTATATTATTAACTTCAGTAAAATATATACAATGAATATTTTGTAT
1 AATTAATTAATATAAATACTTATATTAATAAATTCAATAAAATATATACAATGAATATTTTGTAT
* * * * ***
20242929 GAATCAAATTCATATATTAATTATATTCTTTTCAAAGGAATATTAATTTCCATGTCTTTTATATT
66 AAATCAAATTCATAT-GTAATTATATTCTTTTCAAAAGAAAATTAATTTCCAAACCTTTTATATT
* *** * *
20242994 TTGACCGAAATTAATTAATATAACTATTTATATTAATAAATTCGGTAAATTATATACAATTAATA
130 TTGACCGAAATTAATTAATATAACTACTTATATTAATAAATTCAAAAAAATATATACAAATAATA
*
20243059 TTATTTATAAATCAAATTCATATGTT
195 TTATTTATAAATCAAATTCATATATT
20243085 AATTA
1 AATTA
20243090 TATTCTTTCC
Statistics
Matches: 199, Mismatches: 25, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
220 71 0.36
221 126 0.63
222 2 0.01
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (220 bp):
AATTAATTAATATAAATACTTATATTAATAAATTCAATAAAATATATACAATGAATATTTTGTAT
AAATCAAATTCATATGTAATTATATTCTTTTCAAAAGAAAATTAATTTCCAAACCTTTTATATTT
TGACCGAAATTAATTAATATAACTACTTATATTAATAAATTCAAAAAAATATATACAAATAATAT
TATTTATAAATCAAATTCATATATT
Found at i:20243051 original size:138 final size:138
Alignment explanation
Indices: 20242864--20243231 Score: 549
Period size: 138 Copynumber: 2.7 Consensus size: 138
20242854 TTCATATATT
* * * * *
20242864 AATTAATTAATATAAATACTTATATTATTAACTTCAGTAAAATATATACAATGAATATTTTGTAT
1 AATTAATTAATATAAATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTAT
* *
20242929 GAATCAAATTCATATATTAATTATATTCTTTTCAAAGGAATATTAATTTCCATGTCTTTTATATT
66 GAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATT
20242994 TTGACCGA
131 TTGACCGA
* *
20243002 AATTAATTAATATAACTATTTATATTAATAAATTCGGTAAATTATATACAATTAATATTATT-TA
1 AATTAATTAATATAAATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATT-TTGTA
* * *
20243066 TAAATCAAATTCATATGTTAATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATAT
65 TGAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATAT
*
20243131 TTTGACTGA
130 TTTGACCGA
* * * *
20243140 AATTAATTAATATAATTATTTATATTAATCAATTTGGTAAAATATATACAATTAATAGTTTGTAT
1 AATTAATTAATATAAATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTAT
* *
20243205 GAATCAAACTCATATATTGATTATATT
66 GAATCAAATTCATATATTAATTATATT
20243232 TATCTTCTTT
Statistics
Matches: 206, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
137 2 0.01
138 202 0.98
139 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (138 bp):
AATTAATTAATATAAATATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTAT
GAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATT
TTGACCGA
Found at i:20246974 original size:20 final size:20
Alignment explanation
Indices: 20246948--20247004 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
20246938 GGTCTATCTC
20246948 AAAACATAGAAAATATTATT
1 AAAACATAGAAAATATTATT
*
20246968 GAAACATAGAAAATATTATT
1 AAAACATAGAAAATATTATT
20246988 AAAACATAGAAAATATT
1 AAAACATAGAAAATATT
20247005 TTAGTATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (20 bp):
AAAACATAGAAAATATTATT
Found at i:20259668 original size:59 final size:59
Alignment explanation
Indices: 20259561--20259902 Score: 255
Period size: 58 Copynumber: 5.8 Consensus size: 59
20259551 GCTAACGATG
* * * * * *
20259561 GTCGTAACCATCCCTTTTCATATTTGATGGTCGTCACCTTCCCATTTCATAAATTGAT-
1 GTCGAAACTATCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATAAATTGATA
** * * **
20259619 GATCGTCACTTTCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATTAATCAATA
1 G-TCGAAACTATCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATAAATTGATA
* * * ** ** *
20259679 GTCAAAACTATCCCTTTTCATAGTCGATAGTCAAAATTATCCCTTTTCAT-AGTTGATA
1 GTCGAAACTATCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATAAATTGATA
* * * * * * *
20259737 GTCGAAACTATCCCTTTTAATAGTCGATAGTCGA-AACTATCCCTTTTCATATA-TGATG
1 GTCGAAACTATCCCTTTTCATAGTTGATGGTC-ATCACCATCCCTTTTCATAAATTGATA
* ** * * **
20259795 GTTGTCACCATCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTGC-T-AGTCAATA
1 GTCGAAACTATCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTT-CATAAATTGATA
* ** * **
20259853 GTCAAAACTATCATTTTTCATAATTGATGGTCAAAACCATCCCTTTTCAT
1 GTCGAAACTATCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCAT
20259903 TGTCGATGAT
Statistics
Matches: 223, Mismatches: 53, Indels: 16
0.76 0.18 0.05
Matches are distributed among these distances:
57 2 0.01
58 132 0.59
59 88 0.39
60 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.38
Consensus pattern (59 bp):
GTCGAAACTATCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATAAATTGATA
Found at i:20259808 original size:87 final size:87
Alignment explanation
Indices: 20259630--20259902 Score: 298
Period size: 87 Copynumber: 3.1 Consensus size: 87
20259620 ATCGTCACTT
* * * * *
20259630 TCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATTAATCAATAGTCAAAACTATCCCTT
1 TCCCTTTTCATAGTTGATAGTCATAACCATCCCTTTT-AATAGTCAATAGTCAAAACTATCACTT
* * * **
20259695 TTCATAGTCGATAGTCAAAATTA
65 TTCATAATTGATGGTCAAAACCA
* * * *
20259718 TCCCTTTTCATAGTTGATAGTCGA-AACTATCCCTTTTAATAGTCGATAGTCGAAACTATCCCTT
1 TCCCTTTTCATAGTTGATAGTC-ATAACCATCCCTTTTAATAGTCAATAGTCAAAACTATCACTT
****
20259782 TTCAT-ATATGATGGTTGTCACCA
65 TTCATAAT-TGATGGTCAAAACCA
* * ** *
20259805 TCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTGCTAGTCAATAGTCAAAACTATCATTTT
1 TCCCTTTTCATAGTTGATAGTCATAACCATCCCTTTTAATAGTCAATAGTCAAAACTATCACTTT
20259870 TCATAATTGATGGTCAAAACCA
66 TCATAATTGATGGTCAAAACCA
20259892 TCCCTTTTCAT
1 TCCCTTTTCAT
20259903 TGTCGATGAT
Statistics
Matches: 152, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
86 2 0.01
87 115 0.76
88 34 0.22
89 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.38
Consensus pattern (87 bp):
TCCCTTTTCATAGTTGATAGTCATAACCATCCCTTTTAATAGTCAATAGTCAAAACTATCACTTT
TCATAATTGATGGTCAAAACCA
Found at i:20259847 original size:29 final size:29
Alignment explanation
Indices: 20259557--20259902 Score: 205
Period size: 29 Copynumber: 11.9 Consensus size: 29
20259547 GTGTGCTAAC
* * *
20259557 GATGGTCGTAACCATCCCTTTTCATATTT
1 GATGGTCATCACCATCCCTTTTCATAGTT
* * * *
20259586 GATGGTCGTCACCTTCCCATTTCATAAATT
1 GATGGTCATCACCATCCCTTTTCAT-AGTT
* * **
20259616 GATGATCGTCACTTTCCCTTTTCATAGTT
1 GATGGTCATCACCATCCCTTTTCATAGTT
* *
20259645 GATGGTCATCACCATCCCTTTTCATTAATC
1 GATGGTCATCACCATCCCTTTTCA-TAGTT
* * ** * *
20259675 AATAGTCAAAACTATCCCTTTTCATAGTC
1 GATGGTCATCACCATCCCTTTTCATAGTT
* ** **
20259704 GATAGTCAAAATTATCCCTTTTCATAGTT
1 GATGGTCATCACCATCCCTTTTCATAGTT
* * * * *
20259733 GATAGTCGA-AACTATCCCTTTTAATAGTC
1 GATGGTC-ATCACCATCCCTTTTCATAGTT
* * *
20259762 GATAGTCGA-AACTATCCCTTTTCATA-TAT
1 GATGGTC-ATCACCATCCCTTTTCATAGT-T
**
20259791 GATGGTTGTCACCATCCCTTTTCATAGTT
1 GATGGTCATCACCATCCCTTTTCATAGTT
*
20259820 GATGGTCATCACCATCCCTTTTGC-TAGTC
1 GATGGTCATCACCATCCCTTTT-CATAGTT
* * ** * ** *
20259849 AATAGTCAAAACTATCATTTTTCATAATT
1 GATGGTCATCACCATCCCTTTTCATAGTT
**
20259878 GATGGTCAAAACCATCCCTTTTCAT
1 GATGGTCATCACCATCCCTTTTCAT
20259903 TGTCGATGAT
Statistics
Matches: 259, Mismatches: 50, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
28 2 0.01
29 207 0.80
30 50 0.19
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (29 bp):
GATGGTCATCACCATCCCTTTTCATAGTT
Found at i:20259910 original size:29 final size:29
Alignment explanation
Indices: 20259630--20259909 Score: 231
Period size: 29 Copynumber: 9.6 Consensus size: 29
20259620 ATCGTCACTT
* * ** *
20259630 TCCCTTTTCATAGTTGATGGTCATCACCA
1 TCCCTTTTCATAGTCGATAGTCAAAACTA
* *
20259659 TCCCTTTTCATTAATCAATAGTCAAAACTA
1 TCCCTTTTCA-TAGTCGATAGTCAAAACTA
*
20259689 TCCCTTTTCATAGTCGATAGTCAAAATTA
1 TCCCTTTTCATAGTCGATAGTCAAAACTA
* *
20259718 TCCCTTTTCATAGTTGATAGTCGAAACTA
1 TCCCTTTTCATAGTCGATAGTCAAAACTA
* *
20259747 TCCCTTTTAATAGTCGATAGTCGAAACTA
1 TCCCTTTTCATAGTCGATAGTCAAAACTA
* * **** *
20259776 TCCCTTTTCATA-TATGATGGTTGTCACCA
1 TCCCTTTTCATAGT-CGATAGTCAAAACTA
* * ** *
20259805 TCCCTTTTCATAGTTGATGGTCATCACCA
1 TCCCTTTTCATAGTCGATAGTCAAAACTA
*
20259834 TCCCTTTTGC-TAGTCAATAGTCAAAACTA
1 TCCCTTTT-CATAGTCGATAGTCAAAACTA
** * * * *
20259863 TCATTTTTCATAATTGATGGTCAAAACCA
1 TCCCTTTTCATAGTCGATAGTCAAAACTA
*
20259892 TCCCTTTTCATTGTCGAT
1 TCCCTTTTCATAGTCGAT
20259910 GATCGTCGAT
Statistics
Matches: 204, Mismatches: 42, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
28 2 0.01
29 178 0.87
30 24 0.12
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.38
Consensus pattern (29 bp):
TCCCTTTTCATAGTCGATAGTCAAAACTA
Found at i:20264927 original size:43 final size:43
Alignment explanation
Indices: 20264879--20264967 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
20264869 GAACGTCATC
20264879 TCTGTACAACTTGCAACATCTATGTCTAGATTACTATGAATAT
1 TCTGTACAACTTGCAACATCTATGTCTAGATTACTATGAATAT
20264922 TCTGTACAACTTGCAACATCTATGTCTAGATTACTATGAATAT
1 TCTGTACAACTTGCAACATCTATGTCTAGATTACTATGAATAT
20264965 TCT
1 TCT
20264968 ATCGAGTATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.38
Consensus pattern (43 bp):
TCTGTACAACTTGCAACATCTATGTCTAGATTACTATGAATAT
Found at i:20281423 original size:12 final size:13
Alignment explanation
Indices: 20281399--20281427 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
20281389 GGGCTATAAC
20281399 TATTGCATTTATT
1 TATTGCATTTATT
20281412 TATTGC-TTTATT
1 TATTGCATTTATT
20281424 TATT
1 TATT
20281428 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:20291686 original size:27 final size:27
Alignment explanation
Indices: 20291648--20291956 Score: 248
Period size: 27 Copynumber: 11.5 Consensus size: 27
20291638 TGCGATTCAT
*
20291648 GGGTAAAATGACAAAAATACCCCCGAA
1 GGGTAAAATGACTAAAATACCCCCGAA
*
20291675 GGGTAAAATGACCAAAATACCCCCGAA
1 GGGTAAAATGACTAAAATACCCCCGAA
* **
20291702 GGGTAAAATGA-TAGAAATATCCTTGAA
1 GGGTAAAATGACTA-AAATACCCCCGAA
* * **
20291729 GGGTAAAATGATTGAAATACCCTAG-A
1 GGGTAAAATGACTAAAATACCCCCGAA
**
20291755 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACTAAAATACCCCCGAA
** * ** *
20291782 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTAAAATACCCCCGAA
* * **
20291809 GGTTTAAATGACCGAAATACCCCCGAA
1 GGGTAAAATGACTAAAATACCCCCGAA
* ****
20291836 GGGTAAAATTACTAAAATACCTTTAAA
1 GGGTAAAATGACTAAAATACCCCCGAA
* * * * *
20291863 GGATAAAATGATTGAAATTA-CCTCGGA
1 GGGTAAAATGACT-AAAATACCCCCGAA
* *
20291890 GGGTAAAATGACTGAAATACCCCTGAA
1 GGGTAAAATGACTAAAATACCCCCGAA
*
20291917 AGGTAAAATGACTAAAATACCCCC-ATA
1 GGGTAAAATGACTAAAATACCCCCGA-A
*
20291944 AGGTAAAATGACT
1 GGGTAAAATGACT
20291957 GTTATACCCT
Statistics
Matches: 224, Mismatches: 52, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
26 27 0.12
27 191 0.85
28 6 0.03
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.20
Consensus pattern (27 bp):
GGGTAAAATGACTAAAATACCCCCGAA
Found at i:20291854 original size:107 final size:107
Alignment explanation
Indices: 20291648--20291956 Score: 273
Period size: 107 Copynumber: 2.9 Consensus size: 107
20291638 TGCGATTCAT
*
20291648 GGGTAAAATGACAAAAATACCCCCGAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATGA
1 GGGTAAAATGACAAAAATACCCCCAAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATGA
* * ** * *
20291713 TAGAAATATCCTTGAAGGGTAAAATGATTGAAATACCCTAGA
66 CAGAAATACCCCCGAAGGGTAAAATGACTAAAATACCCTAGA
* * * * ** * * *
20291755 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATGACAAAAATACCCCCAAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATGA
* * * *
20291820 CCGAAATACCCCCGAAGGGTAAAATTACTAAAATACCTTTAAA
66 CAGAAATACCCCCGAAGGGTAAAATGACTAAAATACC-CTAGA
* ** * * ** ** * *
20291863 GGATAAAATGATTGAAATTA-CCTCGGAGGGTAAAATGACTGAAATACCCCTGAAAGGTAAAATG
1 GGGTAAAATGA-CAAAAATACCCCCAAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATG
*
20291927 ACTA-AAATACCCCC-ATAAGGTAAAATGACT
65 AC-AGAAATACCCCCGA-AGGGTAAAATGACT
20291957 GTTATACCCT
Statistics
Matches: 160, Mismatches: 38, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
107 85 0.53
108 70 0.44
109 5 0.03
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.20
Consensus pattern (107 bp):
GGGTAAAATGACAAAAATACCCCCAAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATGA
CAGAAATACCCCCGAAGGGTAAAATGACTAAAATACCCTAGA
Found at i:20291872 original size:81 final size:80
Alignment explanation
Indices: 20291648--20291954 Score: 357
Period size: 81 Copynumber: 3.8 Consensus size: 80
20291638 TGCGATTCAT
** * **
20291648 GGGTAAAATGACAAAAATACCCCCGAAGGGTAAAATGACCAAAATACCCCCGAAGGGTAAAATGA
1 GGGTAAAATGACTGAAATACCCCCGAAGGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGA
*
20291713 TAGAAATATCCTTGAA
66 TAGAAAT-TCCTTGGA
* **
20291729 GGGTAAAATGATTGAAATACCCTAG-AGGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGA
1 GGGTAAAATGACTGAAATACCCCCGAAGGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGA
**
20291793 CCGAAATTCCCTTGGA
66 TAGAAATT-CCTTGGA
* * * * ** *
20291809 GGTTTAAATGACCGAAATACCCCCGAAGGGTAAAATTACTAAAATACCTTTAAAGGATAAAATGA
1 GGGTAAAATGACTGAAATACCCCCGAAGGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGA
* *
20291874 TTGAAATTACCTCGGA
66 TAGAAATT-CCTTGGA
* * *
20291890 GGGTAAAATGACTGAAATACCCCTGAAAGGTAAAATGACTAAAATACCCCCATAA-GGTAAAATG
1 GGGTAAAATGACTGAAATACCCCCGAAGGGTAAAATGACTAAAATACCCCTA-AAGGGTAAAATG
20291954 A
65 A
20291955 CTGTTATACC
Statistics
Matches: 188, Mismatches: 35, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 66 0.35
81 119 0.63
82 2 0.01
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.20
Consensus pattern (80 bp):
GGGTAAAATGACTGAAATACCCCCGAAGGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGA
TAGAAATTCCTTGGA
Found at i:20292317 original size:28 final size:28
Alignment explanation
Indices: 20292261--20292317 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
20292251 TTTTTTGCAG
* **
20292261 TGTTACTGTATTGGGCTAAGACCTGCAC
1 TGTTACTATATTGGGCTAAGACCCACAC
* *
20292289 TGTTACTATTTTGGGCTAAGGCCCACAC
1 TGTTACTATATTGGGCTAAGACCCACAC
20292317 T
1 T
20292318 ATACTGTTAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (28 bp):
TGTTACTATATTGGGCTAAGACCCACAC
Found at i:20313648 original size:21 final size:21
Alignment explanation
Indices: 20313607--20313648 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
20313597 TCCAACGTTG
**
20313607 CATGATGGGAATATTTTTTGA
1 CATGATGGGAATATTCCTTGA
20313628 CATGATGGAGAA-ATTCCTTGA
1 CATGATGG-GAATATTCCTTGA
20313649 AGTATTCATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.36
Consensus pattern (21 bp):
CATGATGGGAATATTCCTTGA
Found at i:20327060 original size:27 final size:26
Alignment explanation
Indices: 20327025--20327330 Score: 301
Period size: 27 Copynumber: 11.4 Consensus size: 26
20327015 CCCCAAACTA
*
20327025 GGTAAAATGACCAAAATACCTCCATAG
1 GGTAAAATGACCGAAATACC-CCATAG
20327052 GGTAAAATGACCGAAATACCCCTATA-
1 GGTAAAATGACCGAAATACCCC-ATAG
*
20327078 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATA-CCCCATAG
* **
20327105 GGTAAAATGACTGAAATACTTTCATAG
1 GGTAAAATGACCGAAATAC-CCCATAG
* * *
20327132 GGTAAAATGACCAAAATGCCCTCATTG
1 GGTAAAATGACCGAAATACCC-CATAG
* *
20327159 AGTAAAATGACTGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCC-ATAG
** *
20327186 GGTAAAATGAATGGAATACCCCATA-
1 GGTAAAATGACCGAAATACCCCATAG
20327211 GGTAAAAATGACCGAAATACCCTCATAG
1 GGT-AAAATGACCGAAATACCC-CATAG
* * *
20327239 GGTAAAATGATCAAAATACCCCCATAA
1 GGTAAAATGACCGAAATA-CCCCATAG
* * *
20327266 GATAGAATGACCGAAATGCCCCCATAG
1 GGTAAAATGACCGAAAT-ACCCCATAG
* * *
20327293 GGTAGAATAACCGAAATACCCCCACAG
1 GGTAAAATGACCGAAATA-CCCCATAG
20327320 GGTAAAATGAC
1 GGTAAAATGAC
20327331 TATTATACCA
Statistics
Matches: 229, Mismatches: 38, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
25 3 0.01
26 42 0.18
27 178 0.78
28 6 0.03
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (26 bp):
GGTAAAATGACCGAAATACCCCATAG
Found at i:20327211 original size:107 final size:107
Alignment explanation
Indices: 20327025--20327331 Score: 356
Period size: 107 Copynumber: 2.9 Consensus size: 107
20327015 CCCCAAACTA
* * *
20327025 GGTAAAATGACCAAAATACCTCCATAGGGTAAAATGACCGAAATACCCCTATA-GGTAAAATG-A
1 GGTAAAATGACCAAAATCCCT-CATTGAGTAAAATGACCGAAATACCCCTATAGGGTAAAATGAA
**
20327088 TCGAAATACCCCCATAGGGTAAAATGACTGAAATACTTTCATAG
65 T-GAAATACCCCCATAGGGTAAAATGACTGAAATACCCTCATAG
*
20327132 GGTAAAATGACCAAAATGCCCTCATTGAGTAAAATGACTGAAATACCCCTATAGGGTAAAATGAA
1 GGTAAAATGACCAAAAT-CCCTCATTGAGTAAAATGACCGAAATACCCCTATAGGGTAAAATGAA
* *
20327197 TGGAATA-CCCCATA-GGTAAAAATGACCGAAATACCCTCATAG
65 TGAAATACCCCCATAGGGT-AAAATGACTGAAATACCCTCATAG
* * * * * * *
20327239 GGTAAAATGATCAAAATACCCCCA-TAAGATAGAATGACCGAAATGCCCCCATAGGGTAGAAT-A
1 GGTAAAATGACCAAAAT-CCCTCATTGAG-TAAAATGACCGAAATACCCCTATAGGGTAAAATGA
* *
20327302 ACCGAAATACCCCCACAGGGTAAAATGACT
64 A-TGAAATACCCCCATAGGGTAAAATGACT
20327332 ATTATACCAT
Statistics
Matches: 171, Mismatches: 21, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
106 8 0.05
107 127 0.74
108 31 0.18
109 5 0.03
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.20
Consensus pattern (107 bp):
GGTAAAATGACCAAAATCCCTCATTGAGTAAAATGACCGAAATACCCCTATAGGGTAAAATGAAT
GAAATACCCCCATAGGGTAAAATGACTGAAATACCCTCATAG
Found at i:20327275 original size:134 final size:133
Alignment explanation
Indices: 20327026--20327329 Score: 360
Period size: 134 Copynumber: 2.3 Consensus size: 133
20327016 CCCAAACTAG
* * *
20327026 GTAAAATGACCAAAATACCTCCATAGGGTAAAATGACCGAAATACCCCTATAGGTAAAATGATCG
1 GTAAAATGACCGAAATACC-CCATAGGGTAAAATGAACGAAATACCCCTATAGGTAAAATGACCG
* *** * * *
20327091 AAATACCCCCATAGGGTAAAATGACTGAAATACTTTCATAGGGTAAAATGACCAAAATGCCCTCA
65 AAATACCCCCATAGGGTAAAATGACTAAAATACCCCCATAAGATAAAATGACCAAAATGCCCCCA
*
20327156 TTGA
130 TAGA
* * *
20327160 GTAAAATGACTGAAATACCCCTATAGGGTAAAATGAATGGAATACCCC-ATAGGTAAAAATGACC
1 GTAAAATGACCGAAATACCCC-ATAGGGTAAAATGAACGAAATACCCCTATAGGT-AAAATGACC
* * *
20327224 GAAATACCCTCATAGGGTAAAATGA-TCAAAATACCCCCATAAGATAGAATGACCGAAATGCCCC
64 GAAATACCCCCATAGGGTAAAATGACT-AAAATACCCCCATAAGATAAAATGACCAAAATGCCCC
*
20327288 CATAGG
128 CATAGA
* * *
20327294 GTAGAATAACCGAAATACCCCCACAGGGTAAAATGA
1 GTAAAATGACCGAAATA-CCCCATAGGGTAAAATGA
20327330 CTATTATACC
Statistics
Matches: 144, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
133 9 0.06
134 131 0.91
135 4 0.03
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (133 bp):
GTAAAATGACCGAAATACCCCATAGGGTAAAATGAACGAAATACCCCTATAGGTAAAATGACCGA
AATACCCCCATAGGGTAAAATGACTAAAATACCCCCATAAGATAAAATGACCAAAATGCCCCCAT
AGA
Found at i:20332029 original size:877 final size:878
Alignment explanation
Indices: 20329418--20334673 Score: 8851
Period size: 877 Copynumber: 6.0 Consensus size: 878
20329408 GCGTATTTTG
*
20329418 GAGTGCTTGAGAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTTAA
1 GAGTGCTTGAGAAACTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTC-TTAA
*
20329483 GGGAACTTGGATGATAGCTTACATGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAG
65 GGGAACTTGGATGATAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAG
*
20329548 GGGATGGTCTAGTGGCAAGGTGGCATGCTGTTTCTAGTAGGGGACTGGAGTTCGAGTCTCACTGT
130 GGGATGGTCTAGTGGCAAGGTGGCATGCTGTTTCTGGTAGGGGACTGGAGTTCGAGTCTCACTGT
* * *
20329613 ATGCAAATGGGATTATATTTTTTTTTCATGAAGAGGCAAGAGTTAGTGTTGGATTTGAACTCTGT
195 ATGCAAATGGGATTATGTTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGT
*
20329678 TGTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAAAGGGAG
260 TGTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAAGGGGAG
*
20329743 AAAATCAAGGAGAGGGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATA
325 AAAATCAAGGAGAGAGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATA
20329808 GGTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTA---TGCCGTTTGGTCTTC
390 GGTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTC
* * *
20329870 TCCGCTTGAAACTTCCTACTCATCTCTTCTTTAATCATTTTCTACTATAGCCGACCCTCTCTTTT
455 TCTGCTTGAAACTTCGTACTCATCTCTTCTTTAATCATTTTCTGCTATAGCCGACCCTCTCTTTT
*
20329935 ACTTTCATCTCTACTTCTTTTCCAATTCTGTTATTCCTTTCTCTGTAAGGTCGAATTCCCATACT
520 ACTTTCATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTGTAAGGTCGAATTCCCATACT
20330000 CTCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCTGGCCAAATCTTCCTGACTGACTATTACTG
585 CTCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCTGGCCAAATCTTCCTGACTGACTATTACTG
*
20330065 AAATACGTTTGTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTT-GTTCTTAGTTAAAT
650 AAATACGTTTGTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAAT
*
20330129 TTCTTTTAGCTCTACTAACAAGCATCGGTTTTCCCTTTTCTTTCCCTTAGGGGCCGAATGTATGG
715 TTCTTTTAGCTCTACTAACAAGCATCGGTTTTCCCTTTTCTTTCCCTTGGGGGCCGAATGTATGG
* * * *
20330194 TTGTTTTCTAATAACTTTTGATCTGCCAAATCATGTTAGCACAGGGGATTCGCCCTTGATCAGTA
780 TTGTTTTCTAACAACTTTTGATCTGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCA
*
20330259 GTGAGGCGCTAGTATCTGTTAGATCTAGCAATGT
845 GTGAGGCGCTAGTATCTGTTAGATCTAGCAAGGT
*
20330293 GAGTGCTTGAGAAACTTGTGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
1 GAGTGCTTGAGAAACTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
20330358 GGAACTTGGATGATAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAGG
66 GGAACTTGGATGATAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAGG
* * *
20330423 GGGTGGTCTAGTCGCAAGGTGGCATGCTGTTTCTGGTAGGGGACTGAAGTTCGAGTCTCACTGTA
131 GGATGGTCTAGTGGCAAGGTGGCATGCTGTTTCTGGTAGGGGACTGGAGTTCGAGTCTCACTGTA
**
20330488 TGCAAATGGGATTATGTTTATTAATTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGT
196 TGCAAATGGGATTATGTTT-TTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGT
*
20330553 TGTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAAAGGGAG
260 TGTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAAGGGGAG
* *
20330618 AAAATCAAGGAGAGGGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCAAAATA
325 AAAATCAAGGAGAGAGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATA
*
20330683 GGTATATCCGAAGTGCCGGAGTGGTTTCCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTC
390 GGTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTC
* *
20330748 TCTACTTGAAACTTCCTACTCATCTCTTCTTTAATCATTTTCTGCTATAGCCGACCCTCTCTTTT
455 TCTGCTTGAAACTTCGTACTCATCTCTTCTTTAATCATTTTCTGCTATAGCCGACCCTCTCTTTT
*
20330813 ACTTTCATCTCTACTTCTTTTCCAATTCTGTTATTCCTTTCTCTGTAAGGTCGAATTCCCATACT
520 ACTTTCATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTGTAAGGTCGAATTCCCATACT
* *
20330878 CTCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCTGGCCAAATCTTCCTGACTGATTACTACTG
585 CTCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCTGGCCAAATCTTCCTGACTGACTATTACTG
* * *
20330943 AAATACGTTTCTTTTTATGGTAACGGGGTGTTACAACCATTTTATTATTTCGTTCTTAGTTAAAT
650 AAATACGTTTGTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAAT
20331008 TTCTTTTAGCTCTACTAACAAGCATCGGTTTTCCCTTTTCTTTCCCTTGGGGGCCGAATGTATGG
715 TTCTTTTAGCTCTACTAACAAGCATCGGTTTTCCCTTTTCTTTCCCTTGGGGGCCGAATGTATGG
* *
20331073 TTGTTTTCTAATAACTTTTGATCTGCCGAATCATGTTAGCACGGGGGATTCGCCCTTAATCAGCA
780 TTGTTTTCTAACAACTTTTGATCTGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCA
* *
20331138 GTGAGGCACTAGTATCTGTTAGATCTAGCAATGT
845 GTGAGGCGCTAGTATCTGTTAGATCTAGCAAGGT
* *
20331172 GAGTGCTTGAGAAACTTGCGCTCTAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
1 GAGTGCTTGAGAAACTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
20331237 GGAACTTGGATGATAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAGG
66 GGAACTTGGATGATAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAGG
* *
20331302 GGATGGTTTAGTGGCAAGGTGGCATGCTGTTTCTGGTAGGGGACTGGAGTTCGAGTCACACTGTA
131 GGATGGTCTAGTGGCAAGGTGGCATGCTGTTTCTGGTAGGGGACTGGAGTTCGAGTCTCACTGTA
20331367 TGCAAATGGGATTATGTTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTT
196 TGCAAATGGGATTATGTTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTT
* *
20331432 GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTAGAGGATATCAAGAAAGGATAAGGGGAGA
261 GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAAGGGGAGA
* * * *
20331497 AAATCAAGGATAGAGGGTGGAGATTTTCAAGGATTTTAAAGGTTTGAAAAATTGTGCCGAAATAG
326 AAATCAAGGAGAGAGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAG
20331562 GTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCT
391 GTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCT
*
20331627 CTGCTTGAAATTTCGTACTCATCTCTTCTTTAATCATTTTCTGCTATAGCCGACCCTCTC-TTTA
456 CTGCTTGAAACTTCGTACTCATCTCTTCTTTAATCATTTTCTGCTATAGCCGACCCTCTCTTTTA
* * * * *
20331691 CTTTCATCTCTACTTCTTTTCCAATTCCATTATTCCTTTATCTGTTAGGTCGAATTCTCATAATC
521 CTTTCATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTGTAAGGTCGAATTCCCATACTC
* * * * *
20331756 TCTCCCTCTCAAATCTCTTTGTTCTTTTTGTTTCAGGCCGAATCTTCCTAACTCACTATTACTGA
586 TCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCTGGCCAAATCTTCCTGACTGACTATTACTGA
* *
20331821 AATACGTTTGTTTTTATGGTAAGGGGGTGTTACAACCAATTTATTATTTCATTCTTAGTTAACTT
651 AATACGTTTGTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATT
* * * *
20331886 TCTTTTTGCTCTAGTAACAAGCTTCTGTTTTCCCTTTTCTTTCTCC-TGGGGGCCGAATGTATGG
716 TCTTTTAGCTCTACTAACAAGCATCGGTTTTCCCTTTTCTTTC-CCTTGGGGGCCGAATGTATGG
* * *
20331950 TTGTTTTCTAACAACTTTTGATATGCCGAATCATGTTAGCACAGGGGATTTGCCCTTGATCAGCA
780 TTGTTTTCTAACAACTTTTGATCTGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCA
* *
20332015 GTGAGGTGCTAGTATCTGTTAGATCTAGCTAGGT
845 GTGAGGCGCTAGTATCTGTTAGATCTAGCAAGGT
* * *
20332049 GAGTGCTTGAGAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATGTTAATTTTGGGGCTCTTAAG
1 GAGTGCTTGAGAAACTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
* *
20332114 GGAACTTGGATGTTAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGATACAAAGAGAGG
66 GGAACTTGGATGATAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAGG
*
20332179 GGATGGTCTAGTGGCAAGGTGGCATGCTGTTTCTGGTAGGGGACTCGAGTTCGAGTCTCACTGTA
131 GGATGGTCTAGTGGCAAGGTGGCATGCTGTTTCTGGTAGGGGACTGGAGTTCGAGTCTCACTGTA
* *
20332244 TGCAAATGGG---A--TTTTCTTTTCATAAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTT
196 TGCAAATGGGATTATGTTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTT
* *
20332304 GTTGGAGAGTTTGAATTGGTCTTGTGAGTAGGTTGTGGAGGATATCAAGGAAGGATAAGGGTAGA
261 GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAAGGGGAGA
* * * * *
20332369 AAATCAAGGATAGAGGGTGGAGATTTTCAGGGAGTTTGAAGGTTTGAAAACTTGTGCCGAAATAG
326 AAATCAAGGAGAGAGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAG
20332434 GTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCT
391 GTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCT
*
20332499 CTGCTTGAAATTTCGTACTCATCTCTTCTTTAATCATTTTCTGCTATAGCCGA-CCTCTC-TTTA
456 CTGCTTGAAACTTCGTACTCATCTCTTCTTTAATCATTTTCTGCTATAGCCGACCCTCTCTTTTA
* * *
20332562 CTTTCATCTCTACTTCTTTTCCAATTCTGTTATTCCTTTCTCTGTAAGGTCTAATTCCCACACTC
521 CTTTCATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTGTAAGGTCGAATTCCCATACTC
* *
20332627 TCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCTGGCCAAATCTTCCTGACTGATTACTACTGA
586 TCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCTGGCCAAATCTTCCTGACTGACTATTACTGA
* * *
20332692 AATACGTTTCTTTTTATGGTAACGGGGTGTTACAACCATTTTATTATTTCGTTCTTAGTTAAATT
651 AATACGTTTGTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATT
*
20332757 TCTTTTAGCTCTACTAACAAGCATCGGTTTTCACTTTTCTTTCCCTTGGGGGCCGAATGTATGGT
716 TCTTTTAGCTCTACTAACAAGCATCGGTTTTCCCTTTTCTTTCCCTTGGGGGCCGAATGTATGGT
*
20332822 TGTTTTCTAATAACTTTTGATCTGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAG
781 TGTTTTCTAACAACTTTTGATCTGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAG
*
20332887 TGAGGCGCTAGTATCTGTTAGATCTAGCAATGT
846 TGAGGCGCTAGTATCTGTTAGATCTAGCAAGGT
* *
20332920 GAGTGCTTGAGAAACTTGTGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAA
1 GAGTGCTTGAGAAACTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
20332985 GGAACTTGGATGATAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAGG
66 GGAACTTGGATGATAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAGG
* *
20333050 GGATGGTCTAGTGGCAAGCTGGCATGCTGTTTCTGGTAGGGGGCTGGAGTTCGAGTCTCACTGTA
131 GGATGGTCTAGTGGCAAGGTGGCATGCTGTTTCTGGTAGGGGACTGGAGTTCGAGTCTCACTGTA
20333115 TGCAAATGGGATTATGTTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTT
196 TGCAAATGGGATTATGTTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTT
*
20333180 GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTAGAGGATATCAAGGAAGGATAAGGGGAGA
261 GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAAGGGGAGA
* * *
20333245 AAATCAAGGACAGAGGGTGGAGATTTTCAAGGATTTTGAAGGTTTGAAAACTTGTGCCGAAATAG
326 AAATCAAGGAGAGAGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAG
*
20333310 GTATATCCGAAGTGCCGTAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCT
391 GTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCT
*
20333375 CTGCTTGAAATTTCGTACTCATCTCTTCTTTAATCATTTTCTGCTATAGCCGACCCTCTC-TTTA
456 CTGCTTGAAACTTCGTACTCATCTCTTCTTTAATCATTTTCTGCTATAGCCGACCCTCTCTTTTA
* * *
20333439 CTTTCATCTCTACTTCTTTTCCAATTCCATTATTCCTTTCTCTGTTAGGTCGAATTCTCATACTC
521 CTTTCATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTGTAAGGTCGAATTCCCATACTC
* * * * *
20333504 CCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCAGGCCGAATCTTCCTAACTCACTATTACTGA
586 TCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCTGGCCAAATCTTCCTGACTGACTATTACTGA
*
20333569 AATACGTTTGTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAACTT
651 AATACGTTTGTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATT
* * * * * *
20333634 TCTTTTTGCTCTAGTAACAAGCTTCTGTTTTCGCTTTTCTTTCTCTTGGGGGCCGAATGTATGGT
716 TCTTTTAGCTCTACTAACAAGCATCGGTTTTCCCTTTTCTTTCCCTTGGGGGCCGAATGTATGGT
* * *
20333699 TGTTTTCTAACAACTTTTGATATGCCGAATCATGTTAGCACTGGGGATTTGCCCTTGATCAGCAG
781 TGTTTTCTAACAACTTTTGATCTGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAG
*
20333764 TGAGGCGCTAGTATCTGTTAGATCTAGCTAGGT
846 TGAGGCGCTAGTATCTGTTAGATCTAGCAAGGT
* * *
20333797 GAGTGCTTGAGAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATGTTAATTTTGGGGCTCTTAAG
1 GAGTGCTTGAGAAACTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
* * *
20333862 GGAACTTGGATGTTAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGATACAGAGAGA-G
66 GGAACTTGGATGATAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAGG
*
20333926 GGATGGTCTAGTGGCAAGGTGGCATGCTGTTTCTGGTAGGGGACTCGAGTTCGAGTCTCACTGTA
131 GGATGGTCTAGTGGCAAGGTGGCATGCTGTTTCTGGTAGGGGACTGGAGTTCGAGTCTCACTGTA
* *
20333991 TGCAAATGGG---AT-TTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGGACTTTGTT
196 TGCAAATGGGATTATGTTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTT
* *
20334052 GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGTGGATATCAAGGAAGGATTAGGGGAGA
261 GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAAGGGGAGA
*
20334117 AAATCAAGGAGAGGGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAG
326 AAATCAAGGAGAGAGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAG
* * * *
20334182 ATATATCCGATGTGCCGGTGTGGTTTTATTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCT
391 GTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCT
* * * *
20334247 CTGCTTAAAACTTCTTACTCATCTCTTCTTTAATCATCTTCTGCTATAGCCGACACTCTCTTTTA
456 CTGCTTGAAACTTCGTACTCATCTCTTCTTTAATCATTTTCTGCTATAGCCGACCCTCTCTTTTA
* * *
20334312 CTTTCATCTCTACTTCTTTTCCAATTCCGTTATTCATTTCTCTGTGAGGTCGAATTCTCATACTC
521 CTTTCATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTGTAAGGTCGAATTCCCATACTC
* * *
20334377 TCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCTGCCCGAGTCTTCCTGACTGACTATTACTGA
586 TCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCTGGCCAAATCTTCCTGACTGACTATTACTGA
* * *
20334442 AATACGTTTATTTTTATCGTAAGGAGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATT
651 AATACGTTTGTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATT
* * * * * *
20334507 TGTTTTAGCTCTACTAATAAGCTTCTGTTTTCCCTTTTCTTTCTCTT-GGGGCCAAATGTATGGT
716 TCTTTTAGCTCTACTAACAAGCATCGGTTTTCCCTTTTCTTTCCCTTGGGGGCCGAATGTATGGT
*
20334571 TGTTTTCTAACAACTATTGATCTGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAG
781 TGTTTTCTAACAACTTTTGATCTGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAG
*
20334636 TGAGGTGCTAGTATCTGTTAGATCTAGCAAGGT
846 TGAGGCGCTAGTATCTGTTAGATCTAGCAAGGT
20334669 GAGTG
1 GAGTG
20334674 TTTGTGGTTT
Statistics
Matches: 4132, Mismatches: 235, Indels: 31
0.94 0.05 0.01
Matches are distributed among these distances:
870 2 0.00
871 528 0.13
872 685 0.17
873 230 0.06
874 150 0.04
875 274 0.07
876 361 0.09
877 982 0.24
878 541 0.13
879 379 0.09
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.38
Consensus pattern (878 bp):
GAGTGCTTGAGAAACTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
GGAACTTGGATGATAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAGG
GGATGGTCTAGTGGCAAGGTGGCATGCTGTTTCTGGTAGGGGACTGGAGTTCGAGTCTCACTGTA
TGCAAATGGGATTATGTTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTT
GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAAGGGGAGA
AAATCAAGGAGAGAGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAG
GTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCT
CTGCTTGAAACTTCGTACTCATCTCTTCTTTAATCATTTTCTGCTATAGCCGACCCTCTCTTTTA
CTTTCATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTGTAAGGTCGAATTCCCATACTC
TCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCTGGCCAAATCTTCCTGACTGACTATTACTGA
AATACGTTTGTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATT
TCTTTTAGCTCTACTAACAAGCATCGGTTTTCCCTTTTCTTTCCCTTGGGGGCCGAATGTATGGT
TGTTTTCTAACAACTTTTGATCTGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAG
TGAGGCGCTAGTATCTGTTAGATCTAGCAAGGT
Found at i:20335173 original size:17 final size:18
Alignment explanation
Indices: 20335141--20335176 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
20335131 GATGGGTCAA
20335141 AATGGGCTACGTGGGCCC
1 AATGGGCTACGTGGGCCC
*
20335159 AATGGGCT-TGTGGGCCC
1 AATGGGCTACGTGGGCCC
20335176 A
1 A
20335177 CACGAGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.17, C:0.25, G:0.39, T:0.19
Consensus pattern (18 bp):
AATGGGCTACGTGGGCCC
Found at i:20335749 original size:27 final size:27
Alignment explanation
Indices: 20335417--20335759 Score: 280
Period size: 27 Copynumber: 12.7 Consensus size: 27
20335407 AAAATATCCA
* * *
20335417 TAATACCCCTGTAAGGTAAAATGATCG
1 TAATACCCCTATAGGGTAAAATGACCG
* * * *
20335444 -AAAAACCCTATAAGGTAAAATGACAG
1 TAATACCCCTATAGGGTAAAATGACCG
* *
20335470 TAGTGCCCCTATAGGGTAAAATGACCG
1 TAATACCCCTATAGGGTAAAATGACCG
* * *
20335497 TACTACCCCTGTAGGGTAAAATGACCA
1 TAATACCCCTATAGGGTAAAATGACCG
* * * *
20335524 AAAAACCGCC-ATAAGGTAAAATGATCG
1 TAATACC-CCTATAGGGTAAAATGACCG
* ** *
20335551 TAATGCCCCCGTAGGGTAAAATGGCCG
1 TAATACCCCTATAGGGTAAAATGACCG
* * **
20335578 TAATGCCCCTATAAGGTAAAATGATTG
1 TAATACCCCTATAGGGTAAAATGACCG
*
20335605 TAATACCCTTATAGGGTAAAATGACCG
1 TAATACCCCTATAGGGTAAAATGACCG
* * *
20335632 AAAAACTCCC-ATAGGGTAAAATGACCA
1 TAATAC-CCCTATAGGGTAAAATGACCG
* * *
20335659 TAATGCCCCTGTAAGGTAAAATGACCG
1 TAATACCCCTATAGGGTAAAATGACCG
*
20335686 TAATACCTCC-ATAGGGTTAAATGACCG
1 TAATACC-CCTATAGGGTAAAATGACCG
* * * *
20335713 AAATATCTCTATAAGGTAAAATGACCG
1 TAATACCCCTATAGGGTAAAATGACCG
* * *
20335740 TAATGCCTCTAGAGGGTAAA
1 TAATACCCCTATAGGGTAAA
20335760 TGAATATTTT
Statistics
Matches: 245, Mismatches: 64, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
26 27 0.11
27 212 0.87
28 6 0.02
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
TAATACCCCTATAGGGTAAAATGACCG
Found at i:20335830 original size:11 final size:11
Alignment explanation
Indices: 20335814--20335883 Score: 50
Period size: 11 Copynumber: 6.0 Consensus size: 11
20335804 TGTAAATGGC
*
20335814 TGATTTGTTTG
1 TGATTTGTATG
**
20335825 TGATTTAAATG
1 TGATTTGTATG
*
20335836 ACTGATTTGTTTG
1 --TGATTTGTATG
*
20335849 TGATTGGTATG
1 TGATTTGTATG
*
20335860 ATTGATTTGTCTG
1 --TGATTTGTATG
20335873 TGATTTGTATG
1 TGATTTGTATG
20335884 ATTGATTCTG
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
11 27 0.61
13 17 0.39
ACGTcount: A:0.19, C:0.03, G:0.26, T:0.53
Consensus pattern (11 bp):
TGATTTGTATG
Found at i:20335882 original size:24 final size:24
Alignment explanation
Indices: 20335782--20335890 Score: 119
Period size: 24 Copynumber: 4.5 Consensus size: 24
20335772 CCCTCAAGTG
*
20335782 TAAATGATTGATTTGTCTGTGATG
1 TAAATGATTGATTTGTCTGTGATT
** *
20335806 TAAATGGCTGATTTGTTTGTGATT
1 TAAATGATTGATTTGTCTGTGATT
* *
20335830 TAAATGACTGATTTGTTTGTGATT
1 TAAATGATTGATTTGTCTGTGATT
***
20335854 GGTATGATTGATTTGTCTGTGATT
1 TAAATGATTGATTTGTCTGTGATT
**
20335878 TGTATGATTGATT
1 TAAATGATTGATT
20335891 CTGAGCATGG
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 74 1.00
ACGTcount: A:0.22, C:0.04, G:0.25, T:0.50
Consensus pattern (24 bp):
TAAATGATTGATTTGTCTGTGATT
Found at i:20335999 original size:27 final size:27
Alignment explanation
Indices: 20335943--20335999 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
20335933 GGAAGTACTG
*
20335943 TACTGGTGGCTCTGCCACAATCACTGT
1 TACTGGTGGCTCTGCCACAATCACTAT
20335970 TACTGGTGGCT-TGGCCACATAT-ACTAT
1 TACTGGTGGCTCT-GCCACA-ATCACTAT
20335997 TAC
1 TAC
20336000 GGGCAGCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 1 0.04
27 24 0.89
28 2 0.07
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (27 bp):
TACTGGTGGCTCTGCCACAATCACTAT
Found at i:20336061 original size:32 final size:32
Alignment explanation
Indices: 20336020--20336197 Score: 182
Period size: 32 Copynumber: 5.6 Consensus size: 32
20336010 GCTGCGATGC
20336020 TACTGATGGCTTTGTGCCAATCATATTACCGT
1 TACTGATGGCTTTGTGCCAATCATATTACCGT
*
20336052 TACTGATGGCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCAATCATATTACCGT
* ** *
20336084 TACTGATGACTTTGTGCTGATCATATTACCAT
1 TACTGATGGCTTTGTGCCAATCATATTACCGT
* * ** ** * *
20336116 TATTGATGG-TTGTGTGTCGGTCATACCACTGC
1 TACTGATGGCTT-TGTGCCAATCATATTACCGT
*
20336148 TACTGATGGCTTTGTGCCAATCATATTACTG-
1 TACTGATGGCTTTGTGCCAATCATATTACCGT
*
20336179 TACTTATGG-TTTGTAGCCA
1 TACTGATGGCTTTGT-GCCA
20336198 TTTTGTTTAT
Statistics
Matches: 122, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
30 5 0.04
31 14 0.11
32 101 0.83
33 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.39
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCAATCATATTACCGT
Found at i:20336123 original size:64 final size:64
Alignment explanation
Indices: 20336018--20336176 Score: 203
Period size: 64 Copynumber: 2.5 Consensus size: 64
20336008 TTGCTGCGAT
* **
20336018 GCTACTGATGGCTTTGTGCCAATCATATTACCGTTACTGATGGCTT-TGTGCCGATCATATTACC
1 GCTACTGATGGCTTTGTGCCAATCATATTACCATTACTGATGG-TTGTGTGCCGATCATACCACC
* * ** * * * *
20336082 GTTACTGATGACTTTGTGCTGATCATATTACCATTATTGATGGTTGTGTGTCGGTCATACCACT
1 GCTACTGATGGCTTTGTGCCAATCATATTACCATTACTGATGGTTGTGTGCCGATCATACCACC
20336146 GCTACTGATGGCTTTGTGCCAATCATATTAC
1 GCTACTGATGGCTTTGTGCCAATCATATTAC
20336177 TGTACTTATG
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
63 2 0.03
64 77 0.97
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (64 bp):
GCTACTGATGGCTTTGTGCCAATCATATTACCATTACTGATGGTTGTGTGCCGATCATACCACC
Found at i:20339478 original size:23 final size:23
Alignment explanation
Indices: 20339452--20339498 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
20339442 AATTGAAAGT
20339452 AATCACCATCGTTTAGAAAAGAA
1 AATCACCATCGTTTAGAAAAGAA
20339475 AATCACCATCGTTTAGAAAAGAA
1 AATCACCATCGTTTAGAAAAGAA
20339498 A
1 A
20339499 TATAAAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (23 bp):
AATCACCATCGTTTAGAAAAGAA
Found at i:20343989 original size:27 final size:27
Alignment explanation
Indices: 20343959--20344058 Score: 173
Period size: 27 Copynumber: 3.7 Consensus size: 27
20343949 TACCCTCAGC
*
20343959 AGGGTAAAATGACCGTAATGCCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTAT
20343986 AGGGTAAAATGACCGTAATGCCCCTAT
1 AGGGTAAAATGACCGTAATGCCCCTAT
*
20344013 AGGGTAAAATGACCGTAATACCCCTAT
1 AGGGTAAAATGACCGTAATGCCCCTAT
*
20344040 AGGGTAAAATGATCGTAAT
1 AGGGTAAAATGACCGTAAT
20344059 ATCATTGTAA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (27 bp):
AGGGTAAAATGACCGTAATGCCCCTAT
Found at i:20344075 original size:54 final size:54
Alignment explanation
Indices: 20343963--20344093 Score: 163
Period size: 54 Copynumber: 2.4 Consensus size: 54
20343953 CTCAGCAGGG
* * * * *
20343963 TAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGG
1 TAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCACTATAAGA
* * * * *
20344017 TAAAATGACCGTAATACCCCTATAGGGTAAAATGATCGTAATATCATTGTAAGA
1 TAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCACTATAAGA
*
20344071 TAAAATGACCATAATGCCCCTAT
1 TAAAATGACCGTAATGCCCCTAT
20344094 CGTGACATGA
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (54 bp):
TAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCACTATAAGA
Found at i:20347797 original size:50 final size:50
Alignment explanation
Indices: 20347673--20348106 Score: 525
Period size: 50 Copynumber: 8.7 Consensus size: 50
20347663 GATAATAACA
* * * ** *
20347673 TGCCAAAGCCATGTCCCAGACATGGTCTTACGTGGGA--TGTTTTCT-GTAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG--G
* * * * * ** *
20347722 TACCAATGCCATATCCCAGATATGGTCTTACACGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* ** * *
20347772 TGCCCATACCATGTCCCAGACATGGTCTTAC-GGAGGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATG-GGACCTCTCATCTCGG
* * * *
20347822 TGCCAATGTCATGTCCTAGACATAGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
20347872 TGCCCACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCCCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
20347922 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACTTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
20347972 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCACGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
20348022 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
20348072 TGCCAACGCCATGTCCCAGACATGGTCTTACATGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGG
20348107 CTCACATATT
Statistics
Matches: 333, Mismatches: 47, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
49 32 0.10
50 295 0.89
51 5 0.02
52 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:20352475 original size:2 final size:2
Alignment explanation
Indices: 20352468--20352499 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
20352458 CGCTAACATA
20352468 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20352500 TTGTAGTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20363298 original size:83 final size:84
Alignment explanation
Indices: 20363159--20363324 Score: 289
Period size: 83 Copynumber: 2.0 Consensus size: 84
20363149 GAGGGAGTGT
* *
20363159 TGTGCAGGAAGTGGACTCTAGCACTTAAGAATTTCGGCTAGAGTGATACTCCTCATTTGGTATGC
1 TGTGCAGGAAGTGGACTCTAGCACTCAAGAATTTCGGCTAGAGTGATACTCCTCATTTAGTATGC
20363224 CTCATTCCAGGT-TTTTTC
66 CTCATTCCAGGTCTTTTTC
* *
20363242 TGTGCAGGAAGTGGACTCTGGCACTCAAGAATTTCGGCTAGAGTGGTACTCCTCATTTAGTATGC
1 TGTGCAGGAAGTGGACTCTAGCACTCAAGAATTTCGGCTAGAGTGATACTCCTCATTTAGTATGC
20363307 CTCATTCCAGGTCTTTTT
66 CTCATTCCAGGTCTTTTT
20363325 TCTTTCTTCT
Statistics
Matches: 78, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
83 73 0.94
84 5 0.06
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.34
Consensus pattern (84 bp):
TGTGCAGGAAGTGGACTCTAGCACTCAAGAATTTCGGCTAGAGTGATACTCCTCATTTAGTATGC
CTCATTCCAGGTCTTTTTC
Found at i:20367410 original size:603 final size:604
Alignment explanation
Indices: 20366265--20367440 Score: 1783
Period size: 603 Copynumber: 1.9 Consensus size: 604
20366255 AGGCGATACA
* * *
20366265 AAAAACCTACTAATAGTTCCATTTTGAGTTAGAACATCCATTAATTTGTGGATTTCCTTTCAAAA
1 AAAAACCTACAAATAGATCCATTTTGAGTTAGAACATCCATTAATTTGTGGATTTCCTCTCAAAA
* *
20366330 TTTAAGATCCACCATTAAAACACCTTAAGCTTTTGAATAATATGACATTGATAAAATAAACATGT
66 TTTAAGATCCACCATTAAAACACCTTAAGCTTTTGAAGAATATGACATGGATAAAATAAACATGT
20366395 AAATGACTCTCAAATAATGTAAAAATATTTCTAATCACCATAAAAACAAGTTTAGAAAAAATAAT
131 AAATGACTCTCAAATAATGTAAAAATATTTCTAATCACCATAAAAACAAGTTTAGAAAAAATAAT
*
20366460 TACATTTGATTCGTTCTAATTCCTTTGATTGAAAATATTGATTTAAGAATCTTGAGAAATTTAAA
196 TACATTTCATTCGTTCTAATTCCTTTGATTGAAAATATTGATTTAAGAATCTTGAGAAATTTAAA
*
20366525 AATATTTTTGTCCACTTTTAAGAATAATTCGTTCTAATTTTGGTTATCCCGGTCCTCTTCAAGAC
261 AATATTTTTGTCCACTTTTAAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGAC
* * * *
20366590 TCCAAGCTTCAACAGATATATAGTAGACATTACCACCTTTTAAAAGCTATATTAAATACAAATTA
326 TCCAAGCTTCAACAAAGATATAGTAGACATTACCACCTTTCAAAAGCTATATTAAACACAAATTA
* *
20366655 TAATTAACTATATTAATCGAAATTCACTCACAAAGATACTTTACCAGATTTATAACATCAAGTCG
391 TAATTAACTATACTAATCGAAATTCACTCACAAAGACACTTTACCAGATTTATAACATCAAGTCG
* **
20366720 AAAACTCGATTCCTATCAAAATTGACCTCTCCAGCCCTCCTAATCACTTCCAAACATAAAGAATA
456 AAAACTCAATTCCTATCAAAATCAACCTCTCCAGCCCTCCTAATCACTTCCAAACATAAAGAATA
20366785 AATCAATTACACATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAAATAATGTTT
521 AATCAATTACACATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAAATAATGTTT
20366850 AATCTTGATAAATAAGACT
586 AATCTTGATAAATAAGACT
* * **
20366869 AAAAACCTTCAAATAGATCCATTTTGAGTTAGAACATCCATTGATTTGTGGATTTGGTCTCAAAA
1 AAAAACCTACAAATAGATCCATTTTGAGTTAGAACATCCATTAATTTGTGGATTTCCTCTCAAAA
** *
20366934 TTTAAGATCCACCATTAAGGCACCTTAAGCTTTTGAAGAATATGACAATGGA-AAAAT-ATCATG
66 TTTAAGATCCACCATTAAAACACCTTAAGCTTTTGAAGAATATGAC-ATGGATAAAATAAACATG
* * * * ***
20366997 TAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAATAAGTTTAGAAATGCTAA
130 TAAATGACTCTCAAATAATGTAAAAATATTTCTAATCACCATAAAAACAAGTTTAGAAAAAATAA
* * * *
20367062 TTACCTTTCATTTGTTCTAATTCCTTTGATTGATAATATTGATTCT-AGAATCTTGAGAAATTTC
195 TTACATTTCATTCGTTCTAATTCCTTTGATTGAAAATATTGATT-TAAGAATCTTGAGAAATTTA
* * *
20367126 AAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCTAATTCTGGTTATCCTGGTCCTCTTCAA-
259 AAAATATTTTTGTCCACTTTTAAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAG
* * * * *
20367190 ATCTCGAAGCTTTAACAAAGGTA-AGGTAGACATTTCCACCTTTCAAATGCTATATTAAACACAA
324 A-CTCCAAGCTTCAACAAAGATATA-GTAGACATTACCACCTTTCAAAAGCTATATTAAACACAA
* *
20367254 ATTGTAATTAACTATACTAATCGAAATTCACTCACAAAGACACTTTACCAGATTTGTAACATCAA
387 ATTATAATTAACTATACTAATCGAAATTCACTCACAAAGACACTTTACCAGATTTATAACATCAA
* * *
20367319 GTCGAAAACTCAATTCCTCA-GAAAATCAACCTCTCC-GACCCTCCTAATGACTTCCAAACATCA
452 GTCGAAAACTCAATTCCT-ATCAAAATCAACCTCTCCAG-CCCTCCTAATCACTTCCAAACATAA
* * *
20367382 ATACTAAA-CTAATTGCACATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAA
515 AGAATAAATC-AATTACACATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAA
20367441 CAATCTGGAA
Statistics
Matches: 515, Mismatches: 50, Indels: 15
0.89 0.09 0.03
Matches are distributed among these distances:
602 4 0.01
603 399 0.77
604 108 0.21
605 4 0.01
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (604 bp):
AAAAACCTACAAATAGATCCATTTTGAGTTAGAACATCCATTAATTTGTGGATTTCCTCTCAAAA
TTTAAGATCCACCATTAAAACACCTTAAGCTTTTGAAGAATATGACATGGATAAAATAAACATGT
AAATGACTCTCAAATAATGTAAAAATATTTCTAATCACCATAAAAACAAGTTTAGAAAAAATAAT
TACATTTCATTCGTTCTAATTCCTTTGATTGAAAATATTGATTTAAGAATCTTGAGAAATTTAAA
AATATTTTTGTCCACTTTTAAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGAC
TCCAAGCTTCAACAAAGATATAGTAGACATTACCACCTTTCAAAAGCTATATTAAACACAAATTA
TAATTAACTATACTAATCGAAATTCACTCACAAAGACACTTTACCAGATTTATAACATCAAGTCG
AAAACTCAATTCCTATCAAAATCAACCTCTCCAGCCCTCCTAATCACTTCCAAACATAAAGAATA
AATCAATTACACATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAAATAATGTTT
AATCTTGATAAATAAGACT
Found at i:20371310 original size:660 final size:661
Alignment explanation
Indices: 20366839--20383333 Score: 20955
Period size: 662 Copynumber: 25.0 Consensus size: 661
20366829 ATTTCACAAA
* * *
20366839 AAATAATGTTTAATCTTGATAAATAAGACTAAAAACCTTCAAATAGATCCATTTTGAGTTA-GAA
1 AAATCATGTTTAATCTTG-TAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATG-A
** * * *
20366903 CATCCATTGATTTGTGGATTTGGTCTCAAAATTTAAGATCCACCATTAAGGCACCTTAAGCTTTT
64 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTA
*
20366968 GAAGAATATGACAATGGA-AAAAT-ATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTA
129 GAAGAATATGAC-ATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTA
* ** * ** * *
20367031 ATCATCATAAAAATAAGTTTAGAAATGCTAATTACCTTTCATTTGTTCTAATTCCTTTGATTGAT
193 ATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAA
*
20367096 AATATTGATTCTAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
258 AATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
* * * * * *
20367161 CTAATTCTGGTTATCCTGGTCCTCTTCAA-ATCTCGAAGCTTTAACAAAGGTAAGGTAGACATTT
323 CTAATTCTAGTTATCCCGGTCCTCTTCAAGA-CTCGAAGCTTCAACAGAGGTAAAGTAGACATTA
*
20367225 CCACCTTTCAAATGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
387 CCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
* * ** * *
20367290 AAGACACTTTACCAGATTTGTAACATCAAGTCGAAAACTCAATTCCTCAGAAAATCAACCTCTCC
452 AAGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCC
* * *
20367355 -GACCCTCCTAATGACTTCCAAACATCAATACTAAACTAATTGCACATAAACTAAGTATAAATTT
517 AG-CCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTT
* * * * * *
20367419 CACATTTAAATCAATTTCACAACAATCTGGAAAGCCAGTTCATGAAGATGTTAAAATTCGAATTT
581 CATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTT
* *
20367484 ATTCAAATTACCTGAC
646 CTTCAAATTACCTCAC
* * * * * * *
20367500 AAATCAAGTTTAATCTTGGAAAATATGACTAAAAACCTTCTAATATGTCTATTTTAAGTTAGGAC
1 AAATCATGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* * * * *
20367565 ATCCATTGATTTGTGAATTTCCTCTCGAAATTCAAGATCCACCTTTAAAACACCTTAAGCTTTTG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTAG
*
20367630 AAGAATATGACATTGATAAAATAATCATGTGATTGACTCTCAAATCATGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* *
20367695 CATCATAAAAACAAGTTTAGAACA-AATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAA
195 CATCATAAAAACAAGTTTAGAA-ATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAAA
*
20367759 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTT
259 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTC
* * * * * *
20367824 TATTTCTGGTTATCCCGGTCCTCTTTAATACACGAAGCTTCAACAGAGGTAAATTAGACATTACC
324 TAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACC
* *
20367889 ACCTTTCAAATGCTATATTAAACACAAATTGTAATTAACTATACTAATCAAAATTCACTCACAAA
389 ACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAA
* * * * * * *
20367954 TATACTTTACTGGATTTGTAACATCAAGTTGAAAACTTGATTACACACAAAATTGACCTCTCCAT
454 GATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAG
* *** * * * *
20368019 CCCTCCTAATGACTTTTGAACATCAATAATAAACCAATTACGCATAAATTAGGTATAAATTTCAT
519 CCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCAT
* ** * *
20368084 ATCTAAATCAATTTCACAACAATTTGGAAAGTCAGCTCATGAAGATGTTGAAATTCA-AATTTCT
584 ATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATT-AGAATTTCT
*
20368148 TCAAATTACCTCAG
648 TCAAATTACCTCAC
* * * * * *
20368162 AAATCATGTTTAATCTTGGTATATAAGACTAAAAACCTTCTAAAAGGTCGATTTTAAGTGAGGAC
1 AAATCATGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* * *
20368227 ATCCATTGATTT-TCGAATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGCACCTTAAGCTTTT
65 ATCCATTGATTTGT-GGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTA
*
20368291 GAAGAATATGACATTGATAAAATAATCATGTGATTGACTCTCAAATCATGTAAAAATATTTCTAA
129 GAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAA
* * * * *
20368356 TCATCATAAAAACAAGTTCA-AAACTAATAATTACCTTTGATTCGTTCTAATTCCCTTAATTGAA
194 TCATCATAAAAACAAGTTTAGAAA-TAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAA
* *
20368420 AATATTGATTTAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACCTTTGAGAATAATTCGTT
258 AATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
** * *
20368485 CTAATTCGGGTTATCCTGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAGTAGACATTAC
323 CTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTAC
*
20368550 CACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATTGAAATTCACTCACAA
388 CACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAA
* * * *
20368615 AGATACTTTACTGGATTTGTAACATCAAGTTGAAAACTTGATTCCTCACAAAATTGGCCTCTCCA
453 AGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCA
* * * *
20368680 GCCCTCTTAATGACTTCCAAATATCAATAATAAACCAATTACACATAAA-TAAAGTATAAATTTC
518 GCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACT-AAGTATAAATTTC
* * *
20368744 ATATTCAAATCAATTTCACAACAATCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTTC
582 ATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTC
20368809 TTCAAATTACCTCAC
647 TTCAAATTACCTCAC
* * *
20368824 AAATCATGTTTAATCCTTGTGAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTAGGGC
1 AAATCATGTTTAAT-CTTGTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* * * ** * *
20368889 ATTCATTGATTTGCGAATTTTTTCTCAAAATTCAAGA-CCTA-CACGTAAAGCACGTTAAGCTTT
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC-ACCA-TTAAAGCACCTTAAGCTTT
* * * ** *
20368952 TGAAGAATATGTCATTGATAAAAGAATCATGTGGTTGACTCTCGAATCATGTAAAAATATTTCTA
128 AGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTA
* * * *
20369017 ATCATCATAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAACTCCTTTGATTGAA
193 ATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAA
* *
20369082 AATATTAATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCTTT
258 AATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
* * *
20369147 CTAATTCTAGTTATCCCAGTCCTCTTCAAGAATCGAAGCTTCAACAGAGATAAAGTAGACATTAC
323 CTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTAC
* *
20369212 CACCTTTCAAAAGCTATATTAAACACAAATTATTATTAACTATACTAATCGAAATTCACTCACAA
388 CACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAA
* * * *
20369277 GGATACTTTACCAGATTTGTAACATCAAGTC-AACAACTCGATTCCTCACAAAATCGACCTCTGC
453 AGATACTTTACCGGATTTGTAACATCAAGTCGAA-AACTTGATTCCTCACAAAATCGACCTCTCC
* * *
20369341 AACCCTTCTAATCACTTCCAAAAATCAATACTAAA-CATATTACACATAAACTAAGTATAAATTT
517 AGCCCTCCTAATCACTTCCAAACATCAATACTAAACCA-ATTACACATAAACTAAGTATAAATTT
* * * * * * * * *
20369405 CACATTTAAATTAATTTCACAAAAATCTAGAATGTCGGTTCATAAAGATGCTGAAATTCGAATTT
581 CATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTT
*
20369470 ATTCAAATTACCTCAC
646 CTTCAAATTACCTCAC
* * *
20369486 AAAACATATTTAATCTTGATAAATAAGACTAAAAACCTTCTAATAGATCCATTTTGAGTTA-GAA
1 AAATCATGTTTAATCTTG-TAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATG-A
* * *
20369550 CATCCATTGATTTGTGGATTTCCTCTCGAAATTCAAGATCCACCATTAAAGCAACTTAAGCTTTT
64 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTA
* * *
20369615 GAAGAATATGACATTGAGAAAATAATTATGTATTTGACTCTCAAATCATGTAAAAATATTTCTAA
129 GAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAA
* * **
20369680 TCATCATAAAAA-AATGTTTAGAAATAATAATTACCTTTGACTCGTTCTGATTCCTTTGATTGAA
194 TCATCATAAAAACAA-GTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAA
* *
20369744 AATATTGATTTAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTAAGAATAACTT-GT
258 AATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAA-TTCGT
* * ** *
20369808 TCTAATTCTGGTTATCCCAGTCCTCTTCAAGACTCGAAGCTTTGACAGAGGTAAAGTAGGCATTA
322 TCTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTA
* * * * *
20369873 CCACCTTTCAAAAGCTATATTAAACAAAAACTATAATTAACTATACTAATCAAAATGCACTCACA
387 CCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
** * * * *
20369938 AAGATACTTTACCAAATTTGTAA-ACTCAAGTCAAAAACTCGATTCCTCACAAAATCAACCACTC
452 AAGATACTTTACCGGATTTGTAACA-TCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTC
* * * *
20370002 CAGCCCTCGTAATCACTTCCAAACATGAATACTAAACTAATTACACATAAACAAAGTATAAATTT
516 CAGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTT
* * * * * ** *
20370067 AACATTTAAATCAAGTTCACAAAAATCTTAAAAGTCGGTTCATGAAGATGTTAAAATTCA-AATT
581 CATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATT-AGAATT
*
20370131 TCTTCGAATTACCTCAC
645 TCTTCAAATTACCTCAC
* ** * *
20370148 AAATCAT-TCTTCATCTTGGTAAATAAGACTAAAAACCTTCTTGTAGGTCCATTATGAGTTAGGA
1 AAATCATGT-TTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGA
* * * * *
20370212 CATCTATTTATTTCTGGATTTCCTCTCAAAATTCAAGATCCACCTTTAAAGCACCTTAAGCTTTT
64 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTA
* * * *
20370277 GAAGAATATGACACTGATAAAATAATCATGTAATTAACTTTCAAATCTTGTAAAAATATTTCTAA
129 GAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAA
* * ** *
20370342 TCATCA-AAGAAATAGGTTTAGAAATAATAATTA-CTATTTTTTCATTCAAATTCCATTGATTGA
194 TCATCATAA-AAACAAGTTTAGAAATAATAATTACCT-TTGATTCATTCAAATTCCTTTGATTGA
*
20370405 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTCTCTACTTTTGAGAATAATTCGT
257 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGT
* * * * *
20370470 TCTAATTCTCGTTATCCTGGTCCTCTTCAAGACTTGAAGCTTTAACAGAGGTAAAGTAGACAGTA
322 TCTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTA
**
20370535 CCACCTTTCAAAAGCTATATTAAGTACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
387 CCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
* *
20370600 AAGATACTTTACCGGATTTATAACATCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTCC
452 AAGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCC
* * *
20370665 AGCCCTCCTAATGACTTCCAAACATCAATACTAAACCAATTACATATAAATTAAGTATAAATTTC
517 AGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTC
20370730 ATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTC
582 ATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTC
20370795 TTCAAATTACCTCAC
647 TTCAAATTACCTCAC
* * * *
20370810 AAATCATGTTTAATCCTTGTAAATAGGACTGAAAACCTTCTAATAGATCCATTTTGAGTTATCAC
1 AAATCATGTTTAAT-CTTGTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* *
20370875 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACTATTAAAGCACCTTATGCTTTAG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTAG
*
20370940 AAGAATATGACATTGAGAAAAT-ATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* * * * *
20371004 CATCATAAAAA-AAATTTAGTAATAATAATTACCTTTGATTCATTCGAATTGCTTTGATTGATAA
195 CATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAAAA
* * * *
20371068 TATTGACTCAAGAATCTTGAGAAATTTTAGAATATTTTTGTCTACTTTTGAAAATAATTCGTTCT
260 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCT
* * *
20371133 AATTCTAGTTATCCCGGTCCACTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGATATTACCA
325 AATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCA
* * * **
20371198 CCTTTCCAAAGCTATATTAAACACAAATTATAATTAACTATATTAATCGAAATTCACTCACAGGG
390 CCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAAG
* * * * * * * *
20371263 CTACTTTACTGGATATGTAACATTAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAAC
455 ATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAGC
* * * * *
20371328 CCTCCTAATCACTTCCAAACATGAATACTAAACTAATTACACATAAACAAAGTAGAAACTTCATA
520 CCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCATA
** * * * * * *
20371393 TCCAAATCAATTACACAAAAAGCTGGAAAGTCGATTCATGAAGATGTTAAAATTTGAATTTCTTC
585 TTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTCTTC
* *
20371458 AAATGACCTAAC
650 AAATTACCTCAC
* *
20371470 AAATCATGTTTGATCTTGGTAAATAAGACTAAAAACCTTCTAATAGGTCGATTTTGAGTT-TGGA
1 AAATCATGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTAT-GA
* * * * *
20371534 CATCAATTGATTTGAGGATTTCCTCTAAAAAATGAAGATCCACCATTAAAGCACCTTAAGCGTTT
64 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGC-TTT
* *
20371599 -GAAGAATATGACACTGATAAAATAATCATGTAATTGACTCTCAAATCTTGTAAAAATATTTCTA
128 AGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTA
* * ** * *
20371663 ATCATCA-AAGAAACAGGTTTAGAAATAATAATTACATTTTTTTCATTCATATTCCATTGATTGA
193 ATCATCATAA-AAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGA
*
20371727 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTCTCTACTTTTGAGAATAATTCGT
257 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGT
* * * * *
20371792 TCTAATTCTCGTTATCCTGGTCCTCTTCAAGACTTGAAGCTTTAACAGAGGTAAAGTAGACAGTA
322 TCTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTA
* ** *
20371857 CTACCTTTCAAAAGCTATATTAAGTACAAATTGTAATTAACTATACTAATCAAAATTCACTCACA
387 CCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
* *
20371922 AAGATACTTTACCGGATTTATAACATCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTCC
452 AAGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCC
* * *
20371987 AGCCCTCCTAATGACTTCCAAACATCAATACTAAACCAATTACATATAAATTAAGTATAAATTTC
517 AGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTC
*
20372052 AATTTTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCA-AATT
582 -ATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATT-AGAATT
20372116 TCTTCAAATTACCTCAC
645 TCTTCAAATTACCTCAC
* * * *
20372133 AAATCATGTTTAATCCTTGTAAATAGGACTGAAAACCTTCTAATAGATCCATTTTGAGTTATCAC
1 AAATCATGTTTAAT-CTTGTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* *
20372198 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACTATTAAAGCACCTTATGCTTTAG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTAG
*
20372263 AAGAATATGACATTGAGAAAAT-ATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* * * * *
20372327 CATCATGAAAAA-AA-ATTAGTAATAATAATTACCTTTGATTCATTCGAATTGCTTTGATTGATA
195 CATCAT-AAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAAA
* * * *
20372390 ATATTGACTCAAGAATCTTGAGAAATTTTAGAATATTTTTGTCTACTTTTGAAAATAATTCGTTC
259 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTC
* * *
20372455 TAATTCTAGTTATCCCGGTCCACTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGATATTACC
324 TAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACC
* * * **
20372520 ACCTTTCCAAAGCTATATTAAACACAAATTATAATTAACTATATTAATCGAAATTCACTCACAGG
389 ACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAA
* * * * * * * *
20372585 GCTACTTTACTGGATATGTAACATTAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAA
454 GATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAG
* * * * * *
20372650 CCGTCCTAATCACTTCCAAACATGAATACTAAACTAATTACACATAAACAAAGTAGAAACTTCAT
519 CCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCAT
** * * * * * *
20372715 ATCCAAATCAATTACACAAAAAGCTGGAAAGTCGATTCATGAAGATGTTAAAATTTGAATTTCTT
584 ATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTCTT
* *
20372780 CAAATGACCTAAC
649 CAAATTACCTCAC
* *
20372793 AAATCATGTTTGATCTTGGTAAATAAGACTAAAAACCTTCTAATAGGTCGATTTTGAGTT-TGGA
1 AAATCATGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTAT-GA
* * * * *
20372857 CATCAATTGATTTGAGGATTTCCTCTAAAAAATGAAGATCCACCATTAAAGCACCTTAAGCGTTT
64 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGC-TTT
* *
20372922 -GAAGAATATGACACTGATAAAATAATCATGTAATTGACTCTCAAATCTTGTAAAAATATTTCTA
128 AGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTA
* * ** *
20372986 ATCATCA-AAGAAACAGGTTTAGAAATAATAATTACATTTTTTTCATTCAAATTCCATTGATTGA
193 ATCATCATAA-AAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGA
*
20373050 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTCTCTACTTTTGAGAATAATTCGT
257 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGT
* * * * *
20373115 TCTAATTCTCGTTATCCTGGTCCTCTTCAAGACTTGAAGCTTTAACAGAGGTAAAGTAGACAGTA
322 TCTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTA
**
20373180 CCACCTTTCAAAAGCTATATTAAGTACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
387 CCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
* *
20373245 AAGATACTTTACCGGATTTATAACATCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTCC
452 AAGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCC
* * *
20373310 AGCCCTCCTAATGACTTCCAAACATCAATACTAAACCAATTACATATAAATTAAGTATAAATTTC
517 AGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTC
20373375 ATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTC
582 ATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTC
20373440 TTCAAATTACCTCAC
647 TTCAAATTACCTCAC
* * *
20373455 AAATCATGTTTAATCCTTGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTATCAC
1 AAATCATGTTTAAT-CTTGTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* *
20373520 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACTATTAAAGCACCTTATGCTTTAG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTAG
*
20373585 AAGAATATGACATTGAGAAAAT-ATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* * * *
20373649 CATCATAAAGAA-AA-TTTAGTAATAATAATTACCTTTGATTCATTCGAATTGCTTTGATTGATA
195 CATCATAAA-AACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAAA
* * * * *
20373712 ATATTGACTCAAGAATCTCGAGAAATTTTAGAATATTTTTGTCTACTTTTGAAAATAATTCGTTC
259 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTC
* * *
20373777 TAATTCTAGTTATCCCGGTCCACTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGATATTACC
324 TAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACC
* * * **
20373842 ACCTTTCCAAAGCTATATTAAACACAAATTATAATTAACTATATTAATCGAAATTCACTCACAGG
389 ACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAA
* * * * * * * *
20373907 GCTACTTTACTGGATATGTAACATTAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAA
454 GATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAG
* * * * *
20373972 CCCTCCTAATCACTTCCAAACATGAATACTAAACTAATTACACATAAACAAAGTAGAAACTTCAT
519 CCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCAT
** * * * * * *
20374037 ATCCAAATCAATTACACAAAAAGCTGGAAAGTCGATTCATGAAGATGTTAAAATTTGAATTTCTT
584 ATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTCTT
* *
20374102 CAAATGACCTAAC
649 CAAATTACCTCAC
* *
20374115 AAATCATGTTTGATCTTGGTAAATAAGACTAAAAACCTTCTAATAGGTCGATTTTGAGTT-TGGA
1 AAATCATGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTAT-GA
* * * ***
20374179 CATCAATTGATTTGAGGATTTCCTCTAAAAAAGGAAGATCCACCATTAAAGCACCTTAAGCGTTT
64 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGC-TTT
* * *
20374244 -GAAGAGTATGACACTGATAAAATAATCATGTAATTGACTCTCAAATCTTGTAAAAATATTTCTA
128 AGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTA
* * ** *
20374308 ATCATCA-AAGAAACAGGTTTAGAAATAATAATTACATTTTTTTCATTCAAATTCCATTGATTGA
193 ATCATCATAA-AAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGA
*
20374372 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTCTCTACTTTTGAGAATAATTCGT
257 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGT
* * * * *
20374437 TCTAATTCTCGTTATCCTGGTCCTCTTCAAGACTTGAAGCTTTAACAGAGGTAAAGTAGACAGTA
322 TCTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTA
**
20374502 CCACCTTTCAAAAGCTATATTAAGTACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
387 CCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
* *
20374567 AAGATACTTTACCGGATTTATAACATCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTCC
452 AAGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCC
* * *
20374632 AGCCCTCCTAATGACTTCCAAACATCAATACTAAACCAATTACATATAAATTAAGTATAAATTTC
517 AGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTC
20374697 ATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTC
582 ATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTC
20374762 TTCAAATTACCTCAC
647 TTCAAATTACCTCAC
* * * *
20374777 AAATCATGTTTAATCCTTGTAAATAGGACTGAAAACCTTCTAATAGATCCATTTTGAGTTATCAC
1 AAATCATGTTTAAT-CTTGTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* *
20374842 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACTATTAAAGCACCTTATGCTTTAG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTAG
*
20374907 AAGAATATGACATTGAGAAAAT-ATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* * * * * *
20374971 CATCATAAAAAAAAATTTAGTAATAATAATTACCTTTGATTCATTCGAATTGCTTTGATTGATAA
195 CATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAAAA
** * * *
20375036 TATTGACACAAGAATCTTGAGAAATTTTAGAATATTTTTGTCTAC-TTTGAAAATAATTCGTTCT
260 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCT
* * *
20375100 AATTCTAGTTATCCCGGTCCACTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGATATTACCA
325 AATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCA
* * * **
20375165 CCTTTCCAAAGCTATATTAAACACAAATTATAATTAACTATATTAATCGAAATTCACTCACAGGG
390 CCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAAG
* * * * * * * * *
20375230 CTACTTTACTGGATATGTAACATTAAGTCAAAAACTGGAGTCCTCACAAAATCAACCTCTCCAAC
455 ATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAGC
* * * * *
20375295 CCTCCTAATCACTTCCAAACATGAATACTAAACTAATTACACATAAACAAAGTAGAAACTTCATA
520 CCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCATA
** * * * * * * *
20375360 TCCAAATCAATTACACAAAAAGCTAGAAAGTCGATTCATGAAGATGTTAAAATTTGAATTTCTTC
585 TTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTCTTC
* *
20375425 AAATGACCTAAC
650 AAATTACCTCAC
* *
20375437 AAATCATGTTTGATCTTGGTAAATAAGACTAAAAACCTTCTAATAGGTCGATTTTGAGTT-TGGA
1 AAATCATGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTAT-GA
* * * ***
20375501 CATCAATTGATTTGAGGATTTCCTCTAAAAAAGGAAGATCCACCATTAAAGCACCTTAAGCGTTT
64 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGC-TTT
* *
20375566 -GAAGAATATGACACTGATAAAATAATCATGTAATTGACTCTCAAATCTTGTAAAAATATTTCTA
128 AGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTA
* * ** *
20375630 ATCATCA-AAGAAACAGGTTTAGAAATAATAATTACATTTTTTTCATTCAAATTCCATTGATTGA
193 ATCATCATAA-AAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGA
*
20375694 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTCTCTACTTTTGAGAATAATTCGT
257 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGT
* * * * * *
20375759 TCTAATTCTCGTTATCCTGGTCCTCTTCAAGGCTTGAAGCTTTAACAGAGGTAAAGTAGACAGTA
322 TCTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTA
***
20375824 CCACC-TTC-AAAGCTATATTAAGTTCAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
387 CCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
* *
20375887 AAGATACTTTACCGGATTTATAACATCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTCC
452 AAGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCC
* * *
20375952 AGCCCTCCTAATGACTTCCAAACATCAATACTAAACCCAATTACATATAAATTAAGTATAAA-TT
517 AGCCCTCCTAATCACTTCCAAACATCAATACTAAA-CCAATTACACATAAACTAAGTATAAATTT
* *
20376016 CATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTTAAATTAGAAATT
581 CATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTT
20376081 CTTCAAATTACCTCAC
646 CTTCAAATTACCTCAC
* * * * *
20376097 AAATCATGTTTAATCCTTGTAAATAGGACTGAAAACCTTTTAATAGATCCATTTTGAGTTATCAC
1 AAATCATGTTTAAT-CTTGTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* *
20376162 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACTATTAAAGCACCTTATGCTTTAG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTAG
*
20376227 AAGAATATGACATTGAGAAAAT-ATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* * * * *
20376291 CATCATAAAAA-AAATTTAGTAATAATAATTACCTTTGATTCATTCGAATTGCTTTGATTGATAA
195 CATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAAAA
* * * * *
20376355 TATTGACTCAAGAATCTCGAGAAATTTTAGAATATTTTTGTCTACTTTTGAAAATAATTCGTTCT
260 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCT
* * *
20376420 AATTCTAGTTATCCCGGTCCACTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGATATTACCA
325 AATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCA
* * * **
20376485 CCTTTCCAAAGCTATATTAAACACAAATTATAATTAACTATATTAATCGAAATTCACTCACAGGG
390 CCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAAG
* * * * * * *
20376550 CTACTTTACTGGATATGTAACATTAAGTC-AAGAACTCGATTCCTCACAAAATCAACCTCTCCAA
455 ATACTTTACCGGATTTGTAACATCAAGTCGAA-AACTTGATTCCTCACAAAATCGACCTCTCCAG
* * * * * *
20376614 CCGTCCTAATCACTTCCAAACATGAATACTAAACTAATTACACATAAACAAAGTAGAAACTTCAT
519 CCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCAT
** * * * * * * * ********
20376679 ATCCAAATCAATTACACAAAAAGCTAGAAAGTCGATTCATGAAGATGTTAAAATTTGNNNNNNNN
584 ATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTCTT
*************
20376744 NNNNNNNNNNNNN
649 CAAATTACCTCAC
*****************************************************************
20376757 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 AAATCATGTTTAATCTTGTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGACA
*****************************************************************
20376822 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTAGA
** * *
20376887 NNAATATGACACTGATAAAATAATCATGTAATTGACTCTCAAATCTTGTAAAAATATTTCTAATC
131 AGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATC
* * ** *
20376952 ATCA-AAGAAACAGGTTTAGAAATAATAATTACATTTTTTTCATTCAAATTCCATTGATTGAAAA
196 ATCATAA-AAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAAAA
*
20377016 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTCTCTACTTTTGAGAATAATTCGTTCT
260 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCT
* * * * * *
20377081 AATTCTCGTTATCCTGGTCCTCTTCAAGACTTC-AAGCTTTAACAGAGGTAAATTTGACAGTACC
325 AATTCTAGTTATCCCGGTCCTCTTCAAGAC-TCGAAGCTTCAACAGAGGTAAAGTAGACATTACC
* **
20377145 AACTTTCAAAAGCTATATTAAGTACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAA
389 ACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAA
* *
20377210 GATACTTTACCGGATTTATAACATCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTCCAG
454 GATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAG
* * *
20377275 CCCTCCTAATGACTTCCAAACATCAATACTAAACCAATTACATATAAATTAAGTATAAATTTCAT
519 CCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCAT
20377340 ATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTCTT
584 ATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTCTT
20377405 CAAATTACCTCAC
649 CAAATTACCTCAC
* * *
20377418 AAATCATGTTTAATCCTTGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTATCAC
1 AAATCATGTTTAAT-CTTGTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* * *
20377483 ATCCATTGATTTGTGGATTTCCTCTCAAAACTCAAGATCCACTATTAAAGCACCTTATGCTTTAG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTAG
*
20377548 AAGAATATGACATTGAGAAAAT-ATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* * * * *
20377612 CATCATAAAAA-AAATTTAGTAATAATAATTACCTTTGATTCATTCGAATTGCTTTGATTGATAA
195 CATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAAAA
* * * * * *
20377676 TATTGACTCAAGAATCTCGAGAAATTTTAGAATATTTTTGTCTACTTTTGAAAATGATTCGTTCT
260 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCT
* * *
20377741 AATTCTAGTTATCCCGGTCCACTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGATATTACCA
325 AATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCA
* * * **
20377806 CCTTTCCAAAGCTATATTAAACACAAATTATAATTAACTATATTAATCGAAATTCACTCACAGGG
390 CCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAAG
* * * * * * * *
20377871 CTACTTTACTGGATATGTAACATTAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAAC
455 ATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAGC
* * * * *
20377936 CCTCCTAATCACTTCCAAACATGAATACTAAACTAATTACACATAAACAAAGTAGAAACTTCATA
520 CCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCATA
** * * * * * * * *
20378001 TCCAAATCAAGTACACAAAAAGCTAGAAAGTCGATTCATGAAGATGTTAAAATTTGAATTTCTTC
585 TTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTCTTC
* *
20378066 AAATGACCTAAC
650 AAATTACCTCAC
* *
20378078 AAATCATGTTTGATCTTGGTAAATAAGACTAAAAACCTTCTAATAGGTCGATTTTGAGTT-TGGA
1 AAATCATGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTAT-GA
* * * * *
20378142 CATCAATTGATTTGAGGATTTCCTCTAAAAAATGAAGATCCACCATTAAAGCACCTTAAGCGTTT
64 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGC-TTT
* * *
20378207 -GAAGAGTATGACACTGATAAAATAATCATGTAATTGACTCTCAAATCTTGTAAAAATATTTCTA
128 AGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTA
* * ** *
20378271 ATCATCA-AAGAAACAGGTTTAGAAATAATAATTACATTTTTTTCATTCAAATTCCATTGATTGA
193 ATCATCATAA-AAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGA
* *
20378335 AAATATTGATTCAAGAATCTTGTGAAATTTCAAAATATTTTTCTCTACTTTTGAGAATAATTCGT
257 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGT
* * * * * * * *
20378400 TCTAATTCTCGTTATCCTGGTCCTCTTCAAGACTTGAAGCTTTAACAGAGGTAAATTTGATAGTA
322 TCTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTA
** *
20378465 CCACCTTTCAAAAGCTATATTAAGTACAAATTGTAAGTAACTATACTAATCGAAATTCACTCACA
387 CCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
* *
20378530 AAGATACTTTACCGGATTTATAACATCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTCC
452 AAGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCC
* * *
20378595 AGCCCTCCTAATGACTTCCAAACATCAATACTAAACCAATTACATATAAATTAAGTATAAATTTC
517 AGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTC
20378660 ATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTC
582 ATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTC
20378725 TTCAAATTACCTCAC
647 TTCAAATTACCTCAC
* * *
20378740 AAATCATGTTTAATCCTTGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTATCAC
1 AAATCATGTTTAAT-CTTGTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* *
20378805 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACTATTAAAGCACCTTATGCTTTAG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTAG
*
20378870 AAGAATATGACATTGAGAAAAT-ATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* * * * *
20378934 CATCATAAAAA-AAATTTAGTAATAATAATTACCTTTGATTCATTCGAATTGCTTTGATTGATAA
195 CATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAAAA
* * * *
20378998 TATTGACTCAAGAATCTTGAGAAATTTTAGAATATTTTTGTCTACTTTTGAAAATAATTCGTTCT
260 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCT
* * *
20379063 AATTCTAGTTATCCCGGTCCACTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGATATTACCA
325 AATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCA
* * * **
20379128 CCTTTCCAAAGCTATATTAAACACAAATTATAATTAACTATATTAATCGAAATTCACTCACAGGG
390 CCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAAG
* * * * * * * *
20379193 CTACTTTACTGGATATGTAACATTAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAAC
455 ATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAGC
* * ** * *
20379258 CCTCCTAATCACTTCCAAACATGAATACTAAACTAATTACACATAAAGAAAGTAGAAACTTCATA
520 CCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCATA
** * * ** * * *
20379323 TCCAAATCAATTACACAAAAAGTTGGAAAGTCGATTCATGAAGATGTTAAAATTTGAATTTCTTC
585 TTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTCTTC
* *
20379388 AAATGACCTAAC
650 AAATTACCTCAC
* * *
20379400 AAATCATGTTTGATCTAGGTAAATAAGACTAAAAACCTTCTAATAGGTCGATTTTGAGTT-TGGA
1 AAATCATGTTTAATCT-TGTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTAT-GA
* * * * *
20379464 CATCAATTGATTTGAGGATTTCCTCTAAAAAATGAAGATCCACCATTAAAGCACCTTAAGCGTTT
64 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGC-TTT
* *
20379529 -GAAGAATATGACACTGATAAAATAATCATGTAATTGACTCTCAAATCTTGTAAAAATATTTCTA
128 AGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTA
* * ** *
20379593 ATCATCA-AAGAAACAGGTTTAGAAATAATAATTACATTTTTTTCATTCAAATTCCATTGATTGA
193 ATCATCATAA-AAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGA
*
20379657 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTCTCTACTTTTGAGAATAATTCGT
257 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGT
* * * * *
20379722 TCTAATTCTCGTTATCCTGGTCCTCTTCAAGACTTGAAGCTTTAACAGAGGTAAAGTAGACAGTA
322 TCTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTA
*
20379787 CCACCTTTCAAAAGCTATATT-AACTACAAATTGTAATTAACTATACTAATCGAAATTTACTCAC
387 CCACCTTTCAAAAGCTATATTAAAC-ACAAATTGTAATTAACTATACTAATCGAAATTCACTCAC
* * *
20379851 AAAGATACTTTACCGGATTTATAACATAAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTC
451 AAAGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTC
* *
20379916 CAGCCCTCCTAATCACTTCCAAACATCAATAGTAAACGAATTACACATAAACTAAGTATAAATTT
516 CAGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTT
* * * ** *
20379981 CACATTTAAATCAATTACACAACAATCC-GGAAATTCAATTCATGAAGATGTTGAAATTCAG-TT
581 CATATTTAAATCAATTTCACAACAA-CCTGGAAAGTCGGTTCATGAAGATGTTGAAATT-AGAAT
*
20380044 TTCTTTAAATTACCTCAC
644 TTCTTCAAATTACCTCAC
* *
20380062 AAATCATGTTTAATCTTGGTAAATAAGACTTAAAACCTTCTAATAGATCCATTTTGAGTTA-GAA
1 AAATCATGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATG-A
* * * *
20380126 CATCCCTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACTATTAAAGCAACTTATGCTTTA
64 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTA
* * *
20380191 GAAGAATATGACATTGAGAAAAT-ATCATGTAATTGACTCTCAGATCATGTACAAATATTTCTAA
129 GAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAA
* * * *
20380255 TCATCATAACAAA-AA-TTTAGTAATAATAATTACCTTTGATTCATTCTAATTGCTTTGATTGAT
194 TCATCATAA-AAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAA
* * * *
20380318 AATATTAATTCAAGAATCTTGAGAAATTTTAGAATATTTTTGCCTACTTTTGAGAATAATTCGTT
258 AATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
* * * * *
20380383 TTAATTCTAGTTATCCCGGTCCACTTCAAGACTCGAAGCTTTAAAAGAGGTAAAGTAGATATTAC
323 CTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTAC
* * * * *
20380448 CACATTT-ACAAAGCTATTTTAAACACAAATTATAATGAACTATATTAATCGAAATTCACTCACA
388 CACCTTTCA-AAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
** ** * * *
20380512 GGGATACTTTACAAGATTTGTAACATCAAGTCAAAAACTTGATTCCTCGCAAAATCAACCTCTCC
452 AAGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCC
* * * * *
20380577 AGCCCTCCTAATCACTTCCAAACATCAATACTAAACTAATTACAGATAAACAAAGTAGAAACTTC
517 AGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTC
* * * * * * *
20380642 ATATTTAAATCAATTACAAAAAAAACTGGAAAGTCTGTTCATGAAGATGTTAAAATTTGAATTTC
582 ATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTC
20380707 TTCAAATTACCTCAC
647 TTCAAATTACCTCAC
* * * * * * *
20380722 AAATCTTTTTTGATCTTGGTAAATAAGACTAAAAACCTTCTAATGGGTCAATCTTGAGTTAGGAC
1 AAATCATGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* * * * * * *
20380787 ATCTATTTATTTGTGGATTTCCACTCACAATTCAAGATCCACCCTTAAAGCACCTTACGCTTTTG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTAG
* * * *
20380852 AAGAATATGACATTCATAAAATAATCATGTAATTGACTTTCAAATCTTGTAAAAGTATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* ** * *
20380917 CATCA-AAGAAACAAGTTTAGGAATAATAATTACCTTTTTTTCGTTCAAATTCCTTTGATTTAAA
195 CATCATAA-AAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAAA
20380981 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTC
259 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTC
* * * * * *
20381046 TAATTCTTGTAATCTCGGTCCTCTTCAAGACTTGAAGCTTTAACAGAGGTAAAATAGACATTACC
324 TAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACC
*
20381111 ACATTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAA
389 ACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAA
* * *
20381176 GATACTTTACCGGATTTGTAACACCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTCCGG
454 GATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAG
* *
20381241 CCCTCCTAATGACTTCCAAACATCAATAAACATAAATAATAAACCAATTACACATAAATTAAGTA
519 CCCTCCTAATCACTTCCAAACATCAAT--AC--------TAAACCAATTACACATAAACTAAGTA
* * * *
20381306 TAAATTTCATATTTAAATTAATTTCACAACAACATGGAAAGTCGTTTCCTGAAGATGTTGAAATT
574 TAAATTTCATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATT
*
20381371 CGAATTTCTTCAAATTACCTCAC
639 AGAATTTCTTCAAATTACCTCAC
* * * *
20381394 AAATCATGTTTAATCCTCGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTATCAC
1 AAATCATGTTTAAT-CTTGTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* * * * *
20381459 ATCCATTGATTTGTGGACTTCCTCTCAAAATTCAAGTTCCACTAGTAAAGCACCTTATGCTTTTA
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGC-TTTA
* *
20381524 -AAGAATATGACATTGATAAAAT-ATCATGTAATTAACTCTCAAATCATTTAAAAATATTTCTAA
129 GAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAA
* * * * *
20381587 TCATCATAAAAA-AATCTTTAGAAATAATAATTACCTTCGATTCATTCTAGTTCCTTTGATTGAT
194 TCATCATAAAAACAA-GTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAA
* * * * ** * *
20381651 AATGTAT-ATTTAGGAATCTTGTGAAATTTCGGAATATTTTTGTCTACTATTGAGAATAATTGGT
258 AATAT-TGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGT
* * * * * * * *
20381715 TCGAATTTTTGTTATCCCGGACCACTTCAAGATTCGAAGCTTCAA-ATGAGATAAAGTTGACATT
322 TCTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACA-GAGGTAAAGTAGACATT
* * ** * *
20381779 ACCACCATT------CTATATTAAAAACTTATTATAATTAACTATATTAATCGAAATTCACTCAC
386 ACCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCAC
* * * * * *
20381838 AAGGATACTTTACCAGATTGGTAACAAT-AAGT-GAAAAACTCGATTCCTCACTAAATCAACCTC
451 AAAGATACTTTACCGGATTTGTAAC-ATCAAGTCG-AAAACTTGATTCCTCACAAAATCGACCTC
* * * * *
20381901 TCAAGCCCTTCTAATCACTTCCAAACATCAATACCACACTAATTACACATAAACTAAGTATAAAT
514 TCCAGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAAT
* * * * * *
20381966 TTCACATTTAAATCAATTTCACAAAAATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCGAAT
579 TTCATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAAT
20382031 TTCTTCAAATTACCTCAC
644 TTCTTCAAATTACCTCAC
* * * *
20382049 ACATCATGTTTGATCTTGGTAAATAAGACTAAAAACCTTCTAATAGGTCGATTTTGAGTTAGGAC
1 AAATCATGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* *
20382114 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCCA-TAAAGCACGTTGAGCGTTT
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCA-CCATTAAAGCACCTTAAGC-TTT
* *
20382178 -GAAGAATATGACATTAATAAAATAATCATGTGATTGACTCTCAAATC----------ATTTCTA
128 AGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTA
* * * * * *
20382232 ATCATCATAAAAACAAGTTTAGAACTAATACTTACATTTGATTCGTTCTAATTCCTTTGACTGAA
193 ATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAA
20382297 AATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
258 AATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
* * * * * *
20382362 CTAATTCTGGTTATCTCGATGCTCTTCAAGACTCGAAGCTTCAATAAAGGTAAAGTAGACATTAC
323 CTAATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTAC
* * * * *
20382427 CACATTTCAAAAGCGATTTTAAAGACAAATTGTAATTAGCTATACTAATCGAAATTCACTCACAA
388 CACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAA
* * *
20382492 AGATACTTTACCAGATTTGTAACATCAAGTCGAAAACTTGATTCCTCGCAAAATTGACCTCTCCA
453 AGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCA
* * * * * ** *
20382557 GCCCT-CTGAATGATTTCCATACATCAATAATAAACCAATTACACATAAATTTTGTTTAAATTTC
518 GCCCTCCT-AATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTC
* * * *
20382621 ATATTTAAATCAATTTTACAACAATCTAGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTTC
582 ATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTC
*
20382686 TTCAATTTACCTCAC
647 TTCAAATTACCTCAC
* * * *
20382701 AAATCATGTTTAATCTTGGTAAATAAAACTGAAAACCTTCTAATAGGTCGATTTTGAGTTAGGAC
1 AAATCATGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGAC
* * * *
20382766 ATACATTGATTTGTGGATTTCTTCTCAAAATTCAAGATCCACCCTTAAAGCACCTTAAGCTTTTG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTAG
* * *
20382831 AAGAATATGGCATTGAGAAAATAATCATGTGATTGACTCTCAAATCATGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* * * *
20382896 CATCATAAAAACAAGTTTAGAACTAATAACTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAA
195 CATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAAAA
* * * *
20382961 TATTAATTCAACAATCTTTAGAAATTTCAAATTATTTTTGTCTACTTTTGAGAATAATTCGTTCT
260 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCT
* * * *
20383026 AATTCTGGTTATCTCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAATGTAGACATTACCA
325 AATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCA
* * *
20383091 TCTTTCAAAAGCTATATTAAACACAAAGTGTAATTAACTATACTAATTGAAATTCACTCACAAAG
390 CCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAAG
* * * * *
20383156 ATACTTTACCGGATTTGTAGCATCAAGTTGAAAACATGATTCCTCACAAAACCGACCTCTCTAGC
455 ATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAGC
* * ** *
20383221 CCTCCTAATCACATCCAAACATCAGTACTAAACTTATTACACATAAACTAAGTATAAATTTCACA
520 CCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCATA
* * ** * *
20383286 TTTAAATCAATTTCAAAAAAATATGGAAGGTCAGTTCATGAAGATGTT
585 TTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTT
20383334 TGTAATAACA
Statistics
Matches: 13588, Mismatches: 2062, Indels: 367
0.85 0.13 0.02
Matches are distributed among these distances:
645 1 0.00
646 171 0.01
647 3 0.00
651 9 0.00
652 376 0.03
653 1 0.00
654 2 0.00
655 230 0.02
656 23 0.00
658 160 0.01
659 127 0.01
660 3821 0.28
661 1697 0.12
662 6167 0.45
663 241 0.02
664 9 0.00
665 124 0.01
666 1 0.00
670 3 0.00
671 195 0.01
672 222 0.02
673 5 0.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (661 bp):
AAATCATGTTTAATCTTGTAAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTTATGACA
TCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTAGA
AGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATC
ATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCAAATTCCTTTGATTGAAAAT
ATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCTA
ATTCTAGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCAC
CTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAAGA
TACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAGCC
CTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCATAT
TTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTAGAATTTCTTCA
AATTACCTCAC
Found at i:20372349 original size:23 final size:23
Alignment explanation
Indices: 20372305--20372349 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
20372295 TGACTCTCAA
* * *
20372305 ATCATGTAAAAATATTTCTAATC
1 ATCATGAAAAAAAATTACTAATC
*
20372328 ATCATGAAAAAAAATTAGTAAT
1 ATCATGAAAAAAAATTACTAAT
20372350 AATAATTACC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.51, C:0.09, G:0.07, T:0.33
Consensus pattern (23 bp):
ATCATGAAAAAAAATTACTAATC
Found at i:20384774 original size:32 final size:32
Alignment explanation
Indices: 20384738--20384804 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
20384728 CAGTTATTTG
20384738 TCTATTAATTTATGTTTACGTATTTTTTATTA
1 TCTATTAATTTATGTTTACGTATTTTTTATTA
20384770 TCTATTAATTTATGTTTACGTATTTTTTATTA
1 TCTATTAATTTATGTTTACGTATTTTTTATTA
20384802 TCT
1 TCT
20384805 TGTCCATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.24, C:0.07, G:0.06, T:0.63
Consensus pattern (32 bp):
TCTATTAATTTATGTTTACGTATTTTTTATTA
Found at i:20384793 original size:18 final size:18
Alignment explanation
Indices: 20384740--20384793 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
20384730 GTTATTTGTC
20384740 TATTAATTTATGTTTACG
1 TATTAATTTATGTTTACG
* *
20384758 TATT-TTTTAT-TAT-C-
1 TATTAATTTATGTTTACG
20384772 TATTAATTTATGTTTACG
1 TATTAATTTATGTTTACG
20384790 TATT
1 TATT
20384794 TTTTATTATC
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
14 4 0.14
15 6 0.21
16 4 0.14
17 6 0.21
18 8 0.29
ACGTcount: A:0.26, C:0.06, G:0.07, T:0.61
Consensus pattern (18 bp):
TATTAATTTATGTTTACG
Found at i:20385200 original size:97 final size:98
Alignment explanation
Indices: 20385085--20385278 Score: 336
Period size: 97 Copynumber: 2.0 Consensus size: 98
20385075 TTAAATCATG
* *
20385085 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATT-GGTGTGATTTCTT
1 AAGGAAATATTCCAAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
20385149 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* *
20385182 AAGGAAATATTCCAAGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCAAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
20385247 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
20385279 TTTATTGCAT
Statistics
Matches: 91, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
97 47 0.52
98 44 0.48
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCAAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:20386629 original size:393 final size:385
Alignment explanation
Indices: 20385901--20386671 Score: 1029
Period size: 393 Copynumber: 2.0 Consensus size: 385
20385891 ATATTTCTAA
* * *
20385901 TCATAATAAAAAAATATTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGATA
1 TCATAATAAAAAAATATTTAGAAATAATAACTACCTTTGATTCATTCTAATTCCTTTGATTGAAA
* * * * *
20385966 ATATTTATTTAGGAATCTTGAGAAATTTCAGAATATTTTTGTCTACTGTTGAGAATAATTCGTTC
66 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTGTTAAGAATAATTCGTTC
* * * **
20386031 CAATTTTGGTTAGCCCGGTCCACTTTAAGACTCGAAGCTTCAAAAGAGATAAATAGATGTTACCA
131 CAATTCTGGTTAGCACGGTCCACTTCAAGACTCGAAGCTTCAAAAGAGATAAATAGACATTACCA
* * ** * * * *
20386096 CCTGTCTATATTAAAAACAAATTATAATTAACTATATTAATTGAACTTCACTCCCGAGGATACTT
196 CCTCTCTATATTAAAAACAAATTATAATTAACTATACTAATCAAAATTCACTCACAAAGATACTT
* *
20386161 TACCGAATTTGGAACATCAAGTTAAAAACTCGATTCCTCACAAAATCAACCTCTCCAGCCCTCCT
261 TACCGAATTTGGAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAACCCTCCT
* *
20386226 AATCACTTCCAAACATCAATACGAAACTAATTACACATAAACTAAGTATAAATTTCACAT
326 AATCACTTCCAAACATCAATAAGAAACCAATTACACATAAACTAAGTATAAATTTCACAT
* * * *
20386286 TCATCATAAAAACATGTTTAGAACTAATAACTACCTTTGATTCATTCTAATTCCTTTGATTGAAA
1 TCATAATAAAAAAATATTTAGAAATAATAACTACCTTTGATTCATTCTAATTCCTTTGATTGAAA
*
20386351 ATATTGATTCAAGAATCTTGAGAAATTTCAAAAATATTTTTGTCTACTTTTAAGAATAATTCGTT
66 ATATTGATTCAAGAATCTTGAGAAATTTC-AAAATATTTTTGTCTACTGTTAAGAATAATTCGTT
* * * * * *
20386416 CTAATTCTGGTTATCACGGTTCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTAC
130 CCAATTCTGGTTAGCACGGTCCACTTCAAGACTCGAAGCTTCAAAAGAGATAAA-TAGACATTAC
* * *
20386481 CACCTCTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCAAAATTTACTCACAA
194 CACCTCT------CTATATTAAAAACAAATTATAATTAACTATACTAATCAAAATTCACTCACAA
* * * * **
20386546 AGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTCCA
253 AGATACTTTACCGAATTTGGAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCA
* * * *
20386611 ACCCTCCTAATGACTTCCAAACTTCAATAATAAACCAATTACACATAAATTAAGTATAAAT
318 ACCCTCCTAATCACTTCCAAACATCAATAAGAAACCAATTACACATAAACTAAGTATAAAT
20386672 GTCATATTTA
Statistics
Matches: 329, Mismatches: 49, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
385 84 0.26
386 77 0.23
387 14 0.04
393 154 0.47
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (385 bp):
TCATAATAAAAAAATATTTAGAAATAATAACTACCTTTGATTCATTCTAATTCCTTTGATTGAAA
ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTGTTAAGAATAATTCGTTC
CAATTCTGGTTAGCACGGTCCACTTCAAGACTCGAAGCTTCAAAAGAGATAAATAGACATTACCA
CCTCTCTATATTAAAAACAAATTATAATTAACTATACTAATCAAAATTCACTCACAAAGATACTT
TACCGAATTTGGAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAACCCTCCT
AATCACTTCCAAACATCAATAAGAAACCAATTACACATAAACTAAGTATAAATTTCACAT
Found at i:20387685 original size:589 final size:589
Alignment explanation
Indices: 20386549--20387709 Score: 1543
Period size: 589 Copynumber: 2.0 Consensus size: 589
20386539 CTCACAAAGA
* * * * **
20386549 TACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTCCAACC
1 TACTTTACCGGATTTGGAACATCAAGTCAAAAACTCGAATCCTCACAAAATCAACCTCTCCAACC
* ** ** * *
20386614 CTCCTAATGACTTCCAAACTTCAATAATAAACCAATTACACATAAATTAAGTATAAATGTCATAT
66 CTCCTAATCACTTCCAAACACCAATAATAAACCAATTACACATAAACCAAATATAAATGTCACAT
* * * *
20386679 TTAAATCAATTTCACAACAATCTTGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTTCTTAA
131 TTAAATCAATTTCACAACAATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCGAATTTCATAA
* * * *
20386744 AATTACCTCACAAATCAGGTTTAATGTTGGTAAATAAAATTGAAAACCTTCTAATAGATCCATTT
196 AATTACCTCACAAATCAGGTTTAATCTTGGTAAATAAAACTAAAAACCTTCTAAAAGAT-CATTT
* ** *
20386809 TGAGTTAGAACATCCATTGATTTGTTGATTTCATCTCAAAATTCAAGTTCCACCTTTAAATAACA
260 TGAGTTAGAACATCCATTGATTTGTGGATTTCA-CT----ATTCAAAATCCACATTTAAATAACA
* * * *
20386874 TTTTACTTTTAAAGAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATGTAAAAA
320 CTTAACTTTTAAAGAATATGACATTGATAAAATATCATGTAATTAACCATCAAATCATGTAAAAA
* * * *
20386939 TATTTCTAATCATCATAAAAAAACTTTTGGAAATAATAATTACCTTTGATTCGTTCTAATTCCTT
385 TATTTCTAATCATCAGAAAAAAAC-TTTAGAAATAATAATTACCTTTCATTCGTTCTAAGTCCTT
* *
20387004 TGATTGATAATATTTATTTAGTAATCTTAAGAAATTTCAGAAAATTTTTGTCTACTATTGAGAAT
449 TGATTGAAAATATTGATTTAGTAATCTTAAGAAATTTCAGAAAATTTTTGTCTACTATTGAGAAT
* ** *
20387069 AATTCGTTCAAATTTTGGTTTTCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGATTGAAGTTC
514 AATTCGTTCAAATTCTAATTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGATTGAAGTTC
20387134 ACACACAAGGT
579 ACACACAAGGT
*
20387145 TACTTTACCGGATTTGGAACATCAAGTCAAAAACTCGAATCCTCACAAAATCAACCTCTCCAGCC
1 TACTTTACCGGATTTGGAACATCAAGTCAAAAACTCGAATCCTCACAAAATCAACCTCTCCAACC
* * *
20387210 C-CCTTAATCACTTCCAAACACCAATACA-AAACTAATTAGACATAAACCAAATATAAATTTCAC
66 CTCC-TAATCACTTCCAAACACCAATA-ATAAACCAATTACACATAAACCAAATATAAATGTCAC
* *
20387273 ATTTAAATTAATTTCATAA-AATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCGAATTTCAT
129 ATTTAAATCAATTTCACAACAATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCGAATTTCAT
* * *
20387337 CAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGACTAAAAACCTTCTAACAAGTAT-A
194 AAAATTACCTCACAAATCAGGTTTAATCTTGGTAAATAAAACTAAAAACCTTCTAA-AAG-ATCA
* *
20387401 TTTTTAGTTAGGACATCCATTGATTTGTGGATTTC-CT-TTCAAAATCCACATTTAAAGT-AC-C
257 TTTTGAGTTAGAACATCCATTGATTTGTGGATTTCACTATTCAAAATCCACATTTAAA-TAACAC
* * * *
20387462 TTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGTGATTAACTATCAAATCATTTAAAA
321 TTAA-CTTTTAAAGAATATGACATTGATAAAAT-ATCATGTAATTAACCATCAAATCATGTAAAA
* *
20387527 ATATTTCTAATCATCAGAAAAACAAGC-TTAGAATTAATAATTACCTTTCATTCGTTCTAAGTCG
384 ATATTTCTAATCATCAGAAAAA-AA-CTTTAGAAATAATAATTACCTTTCATTCGTTCTAAGTCC
* *
20387591 TTTGATTGAAAATATTGATTTAAG-AATCTTGAGAAATTTCA-AAATATTTTTGTCTACTTTTGA
447 TTTGATTGAAAATATTGATTT-AGTAATCTTAAGAAATTTCAGAAA-ATTTTTGTCTACTATTGA
* *
20387654 GAATAATTCGTTCTAATTCTAATTATCCCGGTCCTCTTCAAGACTTGAAGCTTCAA
510 GAATAATTCGTTCAAATTCTAATTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAA
20387710 CAGGGGTAAA
Statistics
Matches: 494, Mismatches: 60, Indels: 29
0.85 0.10 0.05
Matches are distributed among these distances:
587 3 0.01
588 48 0.10
589 182 0.37
590 4 0.01
591 1 0.00
593 2 0.00
595 126 0.26
596 125 0.25
597 3 0.01
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.35
Consensus pattern (589 bp):
TACTTTACCGGATTTGGAACATCAAGTCAAAAACTCGAATCCTCACAAAATCAACCTCTCCAACC
CTCCTAATCACTTCCAAACACCAATAATAAACCAATTACACATAAACCAAATATAAATGTCACAT
TTAAATCAATTTCACAACAATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCGAATTTCATAA
AATTACCTCACAAATCAGGTTTAATCTTGGTAAATAAAACTAAAAACCTTCTAAAAGATCATTTT
GAGTTAGAACATCCATTGATTTGTGGATTTCACTATTCAAAATCCACATTTAAATAACACTTAAC
TTTTAAAGAATATGACATTGATAAAATATCATGTAATTAACCATCAAATCATGTAAAAATATTTC
TAATCATCAGAAAAAAACTTTAGAAATAATAATTACCTTTCATTCGTTCTAAGTCCTTTGATTGA
AAATATTGATTTAGTAATCTTAAGAAATTTCAGAAAATTTTTGTCTACTATTGAGAATAATTCGT
TCAAATTCTAATTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGATTGAAGTTCACACACA
AGGT
Found at i:20388405 original size:655 final size:654
Alignment explanation
Indices: 20387124--20390901 Score: 4512
Period size: 655 Copynumber: 5.8 Consensus size: 654
20387114 GCTTCAAAAG
* * * * *
20387124 ATTGAAGTTCACACACAAGGTTACTTTACCGGATTTGGAACATCAAGTCAAAAACTCGAATCCTC
1 ATTGAAATTCACTCACAAGGATACTTTACCGGATTTGTAACATCAAGTCAAAAACTCGATTCCTC
* * * *
20387189 ACAAAATCAACCTCTCCAGCCC-CCTTAATCACTTCCAAACACCAATACAAAACTAATTAGACAT
66 ACAAAATCAACCTCTCCAGCCCTCC-TAATCACTTCCAAACATCAATACTAAACCAATTACACAT
* * * *
20387253 AAACCAAATATAAATTTCACATTTAAATTAATTTCATAA-AATCTGGAAAGTCAGTTCATGAAGA
130 AAACTAAGTATAAATTTCACATTTAAATCAATTTCACAACAATCTGGAAAGTCAGTTCATGAAGA
*
20387317 TGTTAAAATTCGAATTTCATCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGACTAA
195 TGTTAAAATTCGAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGACTAA
* * * *
20387382 AAACCTTCTAACAAGTAT--ATTTTTAGTTAGGACATCCATTGATTTGTGGATTTCCTTTC---A
260 AAACCTTCTAA-TAG-ATCCATTTTGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAA
*
20387442 -A-AA--TCCA-CATTTAAAGTACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATG
323 TACAAGTTCCACCA-TTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATG
* ** * * * * *
20387502 TGATTAACTATCAAATCATTTAAAAATATTTCTAATCATCAGAAAAACAAGCTTAGAATTAATAA
387 TGATTGACCCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAAAAAGTTTAGAACTAATAA
* *
20387567 TTACCTTTCATTCGTTCTAAGTCGTTTGATTGAAAATATTGATTTAAGAATCTTGAGAAATTTCA
452 TTACCTTTCATTCGTTCTAATTCCTTTGATTGAAAATATTGATTT-AGAATCTTGAGAAATTTCA
** *
20387632 AAATATTTTTGTCTACTTTTGAGAATAATTCGTTCTAATTCTAATTATCCCGGTCCTCTTCAAGA
516 AAATATTTTTGTCTACTTTTGAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCACTTCAAGA
* * * * * * * *
20387697 CTTGAAGCTTCAACAGGGGTAAAGTATACTTTACCATCTTTCAAAAGCTATATTAAACACAAATT
581 CTCGAAGCATCAAAAGAGGTAAAGTAGACATTACCACCTTT------CTATATTAAAAACAAATT
20387762 GAAATTAACTATACTA
640 -AAATTAACTATACTA
* * * * * *
20387778 ATCGAAATTCACTCACAAAGATACTTTACCAGATTTGTAACATCAAGTCGAAAACTTGGTTCCTC
1 ATTGAAATTCACTCACAAGGATACTTTACCGGATTTGTAACATCAAGTCAAAAACTCGATTCCTC
** * * *
20387843 ACAAAATTGACCTCTCCAACCCTCCTAATGACTTCCAAACATCAATAGTAAACCAATTACACATA
66 ACAAAATCAACCTCTCCAGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATA
* * **
20387908 AATTAAGTATAAATTTCATATTTAAATCAATTTCACAACAATCTGGAAAGTTGGTTCATGAAGAT
131 AACTAAGTATAAATTTCACATTTAAATCAATTTCACAACAATCTGGAAAGTCAGTTCATGAAGAT
* * *
20387973 GTTGAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAAACTTGGTAAATAAGACTAAA
196 GTTAAAATTCGAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGACTAAA
* * *
20388038 AACCTACTAATAGATCCATTTTGAGTTCGAACATCCATTGATTTGTTGATTTCCTCTCAAAATAC
261 AACCTTCTAATAGATCCATTTTGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATAC
* *
20388103 AAGTTCCACCATTAAAGCACCTTATGCTTTT-AATGAATATGACATTGATAAAAT-ATCATGTAA
326 AAGTTCCACCATTAAAGCACCTTAAGCTTTTGAA-GAATATGACATTGATAAAATAATCATGTGA
* *
20388166 TTGACCCTCAAATCATGTAAAAACT-TTTCTAATCATCA-ACAAAAAAACTTTAGAAATAATAAT
390 TTGACCCTCAAATCATGTAAAAA-TATTTCTAATCATCATA-AAAAAAAGTTTAGAACTAATAAT
* * * *
20388229 TACCTTTCATTCGTTCTAATTCCTCTGATTGATAATATTTATTTAGTCATCTTGAGAAATTTCAG
453 TACCTTTCATTCGTTCTAATTCCTTTGATTGAAAATATTGATTTAG-AATCTTGAGAAATTTCA-
** * * * *
20388294 AAA-ATTTTTGTCTACTACTGAGAATAATTCGTTCTAATTTTGGTTATCTCAGTCCACTTCCAGA
516 AAATATTTTTGTCTACTTTTGAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCACTTCAAGA
* * *
20388358 CTCGAAGCATCAAAAGAGATAAAGTAGACGTTGCCACCTTTCTATATTAAAAACAAATTAGAATT
581 CTCGAAGCATCAAAAGAGGTAAAGTAGACATTACCACCTTTCTATATTAAAAACAAATTA-AATT
*
20388423 AACTATATTA
645 AACTATACTA
* *
20388433 ATTGAAATTCTCTCACAAGGATACTTTACCGGATTTGGAACATCAAGTCAAAAACTCGATTCCTC
1 ATTGAAATTCACTCACAAGGATACTTTACCGGATTTGTAACATCAAGTCAAAAACTCGATTCCTC
* * * *
20388498 ACAAAATCAACCTCTCCAGCCCACCTAATCACTTCCAAAAATCAATACTAAACTAATTACACATT
66 ACAAAATCAACCTCTCCAGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATA
* * * *
20388563 AACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATCTAGAGAGTCAATTCATGAAGAT
131 AACTAAGTATAAATTTCACATTTAAATCAATTTCACAACAATCTGGAAAGTCAGTTCATGAAGAT
** * * **
20388628 GTTAAAATTTTAATTTCTTCAAATTACCTCACAAATCATGTTTGATGTAAGTAAATAAGACTAAA
196 GTTAAAATTCGAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGACTAAA
* * * *
20388693 AACCTTCTAATAGGTCGATTTTGAGTTAGGACATCCATTGATTTGTCGATTTCCTCTCAAAATTA
261 AACCTTCTAATAGATCCATTTTGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAA-TA
* * * *
20388758 -AA-TATCCACCCTTAAACCACCTTAAGCTTTTGAAGAGTATGACGTTGATAAAATAATCATGTG
325 CAAGT-TCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGTG
* ** *
20388821 ATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACTAGTTTAGAGCTAATAATT
389 ATTGACCCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAAAAAGTTTAGAACTAATAATT
* * *
20388886 ACCTTTGATTCATTCTAATTCCTTTGATTGAAAATATTGATTCAAGAATCTTGAGAAATTTCAAA
454 ACCTTTCATTCGTTCTAATTCCTTTGATTGAAAATATTGATT-TAGAATCTTGAGAAATTTCAAA
* * * * *
20388951 ATATTTTTGTCTACTTTTGAGAATAATTCATTCTAATTCTGGTTAGCCCGATTCGCTTCAAGACT
518 ATATTTTTGTCTACTTTTGAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCACTTCAAGACT
* * * *
20389016 CGAAG-ATTCAATAGTGGTAAAGTAGACATTACCACCTTTC------AAAAGC----TATATTAA
583 CGAAGCA-TCAAAAGAGGTAAAGTAGACATTACCACCTTTCTATATTAAAAACAAATTAAATTAA
* *
20389070 --ACACAA
647 CTATACTA
* * * ** * *
20389076 ATTGTAATTCACT-------ATAC-TAATC-GAAAT-TAACATCAAGTCGAAAACAT-GATTCCA
1 ATTGAAATTCACTCACAAGGATACTTTACCGGATTTGTAACATCAAGTCAAAAAC-TCGATTCCT
** ** * *
20389130 CACAAAATTGACAACTCCAG-CCTCCTAATGACTTCCAAACATCAATAATAAACCAATTACACAT
65 CACAAAATCAACCTCTCCAGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACAT
* * * ** * * *
20389194 AAATTAGGTACAAATTTCTTATTTAAATCAATTTCACAACAATATGGAAAGTCGGTTCAAGAAGA
130 AAACTAAGTATAAATTTCACATTTAAATCAATTTCACAACAATCTGGAAAGTCAGTTCATGAAGA
* * * * * ** * * * *
20389259 TGTTGAAATTCAAATTTTTTGAATTTATGTCACAAATCTTGTTTAATCTTCGTAAATAAGGCTGA
195 TGTTAAAATTCGAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGACTAA
* *
20389324 AAACCTTCTAATAGATCCATTTTGAGTTAGAACATCTATTGATTTGTGGATTTCCTCTCAAAATT
260 AAACCTTCTAATAGATCCATTTTGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATA
* * * *
20389389 CAAGTTCCACCACTAAAGCACCTTATGCTTTT-AAGGAATATGACATTGATAAAAT-ATCATATA
325 CAAGTTCCACCATTAAAGCACCTTAAGCTTTTGAA-GAATATGACATTGATAAAATAATCATGTG
* * * *
20389452 ATTGCCCCTCAAATCATGTAAAACTATTTCTAATCGTCATAAAAACAAGTTTAGAACTAATAATT
389 ATTGACCCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAAAAAGTTTAGAACTAATAATT
* * * * *
20389517 ACTTTTGATTCGTTCTAATTCCTTTGATTGATAATATTGATTCATGAATCTTGAGAAAGTTCAAA
454 ACCTTTCATTCGTTCTAATTCCTTTGATTGAAAATATTGATTTA-GAATCTTGAGAAATTTCAAA
* * * **
20389582 ATATTTTTATCCACTTTTGACAATAATTCGTTCTAATTCTGGTTATCCCGGTCCTTTTCAAGACT
518 ATATTTTTGTCTACTTTTGAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCACTTCAAGACT
* * * * * * * *
20389647 TGAAGCTTCAACATAGGGAAAGTAGACATTACCACCTTCTAAAAGCTATATTGAACACAAATTTT
583 CGAAGCATCAAAAGAGGTAAAGTAGACATTACCACCTT-T-----CTATATTAAAAACAAA-TTA
20389712 AATTAACTATACTA
641 AATTAACTATACTA
* * * *
20389726 ATCGAAATTCACTCACAAAGATACTGTACCGGATTTGTAACATCATGTCAAAAACAT-GATTCCT
1 ATTGAAATTCACTCACAAGGATACTTTACCGGATTTGTAACATCAAGTCAAAAAC-TCGATTCCT
* * * * * * * *
20389790 CACAAAATTGAA-CTCTCCAGCCTTCCTAATGACTTCCACATATCAACAATAAAACAATTACACA
65 CACAAAA-TCAACCTCTCCAGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACA
* * * * ** *
20389854 TGAATTAATTATAAATTTCATATTTAAAGAAATTTCACAACAATCTGGAAAGACAGTTCATGAAG
129 TAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAACAATCTGGAAAGTCAGTTCATGAAG
* * * *
20389919 ATGTTGAAATTCGAATTTCTTCAAATTACCTCACAAATCATGTTTAATGTTGTTAAATAAGACTG
194 ATGTTAAAATTCGAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGACTA
* *
20389984 AAAACCTTCGAATAGATCCATTTTGAGTTAGAACATCCATTAATTTGTGGATTTCCTCTCAAAAT
259 AAAACCTTCTAATAGATCCATTTTGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAAT
* * *
20390049 TCAAGATT-CACCCTTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAAT-ATAATGT
324 ACAAG-TTCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGT
* * *
20390112 TATTGACCCTCAAATAATGTAAAAATATTTCTAATCATCATAAAAAAAA-TTTAGAAATAATAAT
388 GATTGACCCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAAAAAGTTTAGAACTAATAAT
* * * *
20390176 TACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATATTGATTTAGGAATCTTGTGAAATTTTAG
453 TACCTTTCATTCGTTCTAATTCCTTTGATTGAAAATATTGATTTA-GAATCTTGAGAAATTTCAA
* * * *
20390241 AATATTTGTGTCTACTATTGA-ATATAATTTGTTCTAATTTTGGTTATCCCGGTCCACTTCAAGA
517 AATATTTTTGTCTACTTTTGAGA-ATAATTCGTTCTAATTCTGGTTATCCCGGTCCACTTCAAGA
* *
20390305 CTCAAAGCATCAAAAGAGATAAAGTAGACATTACCACCTTTCTATATTAAAAACAAATTATAATT
581 CTCGAAGCATCAAAAGAGGTAAAGTAGACATTACCACCTTTCTATATTAAAAACAAATTA-AATT
*
20390370 AACTATATTA
645 AACTATACTA
20390380 ATTGAAATTCACTCACAAGGATACTTTACCGGATTTGTAACATCAAGTCAAAAACTCGATTCCTC
1 ATTGAAATTCACTCACAAGGATACTTTACCGGATTTGTAACATCAAGTCAAAAACTCGATTCCTC
* * * * *
20390445 ACAAAATCAAACTCTCCAGCCCTCTTAATCACTTCCAAACACCAATACAAAACTAATTACACATA
66 ACAAAATCAACCTCTCCAGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATA
* * *
20390510 AACCAAGTATAAATTTCACATTTAAATTAATTTCACAA-AATCTGGAAGGTCAGTTCATGAAGAT
131 AACTAAGTATAAATTTCACATTTAAATCAATTTCACAACAATCTGGAAAGTCAGTTCATGAAGAT
* * * * *
20390574 GTTAAAATTCGAATTTCTTCAATTTGCCTCACAGATCATGTGTAATCTTGCTAAATAAGACTAAA
196 GTTAAAATTCGAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGACTAAA
* ** * * * * * *
20390639 AACATTCTAGCAGGTCGATTTTGATTTAGGACATCCATTGATTTTTGGATTTCCTCTCAAAATTC
261 AACCTTCTAATAGATCCATTTTGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATAC
* * *
20390704 AAGATCCACCTTTAAAGTACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGTGAT
326 AAGTTCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGTGAT
* * * * *
20390769 TGACTCTCAATTCATTTAAAAAATATTTCTAATCACCATAAAAACAAGTTTAGAACTAATAATTA
391 TGACCCTCAAATCATGT-AAAAATATTTCTAATCATCATAAAAAAAAGTTTAGAACTAATAATTA
* * *
20390834 CCTTTCATTCGTTCTAATTCCTTTGATTGAAAATATTAATTCAAGAATCTTGAGAAATGTCAATA
455 CCTTTCATTCGTTCTAATTCCTTTGATTGAAAATATTGATT-TAGAATCTTGAGAAATTTCAA-A
20390899 ATA
518 ATA
20390902 AACCAATTAC
Statistics
Matches: 2655, Mismatches: 393, Indels: 149
0.83 0.12 0.05
Matches are distributed among these distances:
630 1 0.00
631 213 0.08
632 243 0.09
633 39 0.01
634 4 0.00
635 3 0.00
636 4 0.00
637 1 0.00
643 17 0.01
645 5 0.00
646 2 0.00
648 6 0.00
650 20 0.01
652 1 0.00
653 193 0.07
654 330 0.12
655 521 0.20
656 274 0.10
657 12 0.00
658 3 0.00
659 6 0.00
660 200 0.08
661 505 0.19
662 50 0.02
663 2 0.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (654 bp):
ATTGAAATTCACTCACAAGGATACTTTACCGGATTTGTAACATCAAGTCAAAAACTCGATTCCTC
ACAAAATCAACCTCTCCAGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATA
AACTAAGTATAAATTTCACATTTAAATCAATTTCACAACAATCTGGAAAGTCAGTTCATGAAGAT
GTTAAAATTCGAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGACTAAA
AACCTTCTAATAGATCCATTTTGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATAC
AAGTTCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGTGAT
TGACCCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAAAAAGTTTAGAACTAATAATTAC
CTTTCATTCGTTCTAATTCCTTTGATTGAAAATATTGATTTAGAATCTTGAGAAATTTCAAAATA
TTTTTGTCTACTTTTGAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCACTTCAAGACTCGA
AGCATCAAAAGAGGTAAAGTAGACATTACCACCTTTCTATATTAAAAACAAATTAAATTAACTAT
ACTA
Found at i:20389732 original size:631 final size:632
Alignment explanation
Indices: 20387162--20390901 Score: 3704
Period size: 661 Copynumber: 5.8 Consensus size: 632
20387152 CCGGATTTGG
* * ** * * *
20387162 AACATCAAGTCAAAAACTCGAATCCTCACAAAATCAACCTCTCCAGCCCCCTTAATCACTTCCAA
1 AACATCAAGTCGAAAACT-GATTCCTCACAAAATTGACATCTCCAGCCTCC-TAATGACTTCCAA
* * * ** * * * *
20387227 ACACCAATACA-AAACTAATTAGACATAAACCAAATATAAATTTCACATTTAAATTAATTTCATA
64 ACATCAATA-ATAAACCAATTACACATAAATTAAGTATAAATTTCATATTTAAATCAATTTCACA
* * *
20387291 A-AATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCGAATTTCATCAAATTACCTCACAAATC
128 ACAATCTGGAAAGTCAGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATC
* * *
20387355 ATGTTTAATCTTGGTAAATAAGACTAAAAACCTTCTAACAAGTAT--ATTTTTAGTTAGGACATC
193 ATGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAA-TAG-ATCCATTTTGAGTTAGAACATC
* * *
20387418 CATTGATTTGTGGATTTCCTTTCAAAATCCACA-TT------TAAAGTACCTTAAGCTTTTGAAG
255 CATTGATTTGTGGATTTCCTCTCAAAATTCA-AGTTCCACCCTAAAGCACCTTAAGCTTTTGAAG
* * ** *
20387476 AATATGACATTGATAAAATAATCATGTGATTAACTATCAAATCATTTAAAAATATTTCTAATCAT
319 AATATGACATTGATAAAAT-ATCATGTAATTGACCCTCAAATCATGTAAAAATATTTCTAATCAT
* * * * * *
20387541 CAGAAAAACAAGCTTAGAATTAATAATTACCTTTCATTCGTTCTAAGTCGTTTGATTGAAAATAT
383 CATAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATAT
* *
20387606 TGATTTAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCTAAT
448 TGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTATTGAGAATAATTCGTTCTAAT
** * * * * * * * *
20387671 TCTAATTATCCCGGTCCTCTTCAAGACTTGAAGCTTCAACAG-GGGTAAAGTATACTTTACCATC
513 TCTGGTTATCCCGGTCCACTTCAAGACTCGAAGCATCAAAAGAGAG-AAAGTAGACATTACCACC
* *
20387735 TTTC--AAAAGCTATATTAAACACAAATTGAAATTAACTATACTAATCGAAATTCACTCACAAAG
577 TTTCTTAAAAACTATATTGAACACAAATTG----TAA-T-T-C-AA-CG--A-T-ACT-------
**
20387798 ATACTTTACCAGATTTGT
622 -TA----ACC-GAAAT-T
* * *
20387816 AACATCAAGTCGAAAACTTGGTTCCTCACAAAATTGACCTCTCCAACCCTCCTAATGACTTCCAA
1 AACATCAAGTCGAAAAC-TGATTCCTCACAAAATTGACATCTCC-AGCCTCCTAATGACTTCCAA
*
20387881 ACATCAATAGTAAACCAATTACACATAAATTAAGTATAAATTTCATATTTAAATCAATTTCACAA
64 ACATCAATAATAAACCAATTACACATAAATTAAGTATAAATTTCATATTTAAATCAATTTCACAA
**
20387946 CAATCTGGAAAGTTGGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATCA
129 CAATCTGGAAAGTCAGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATCA
* * *
20388011 TGTTTAAACTTGGTAAATAAGACTAAAAACCTACTAATAGATCCATTTTGAGTTCGAACATCCAT
194 TGTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGATCCATTTTGAGTTAGAACATCCAT
* * * *
20388076 TGATTTGTTGATTTCCTCTCAAAATACAAGTTCCACCATTAAAGCACCTTATGCTTTT-AATGAA
258 TGATTTGTGGATTTCCTCTCAAAATTCAAGTTCCACC-CTAAAGCACCTTAAGCTTTTGAA-GAA
20388140 TATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATGTAAAAACT-TTTCTAATCATCA
321 TATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATGTAAAAA-TATTTCTAATCATCA
* * * * * *
20388204 -ACAAAAAAACTTTAGAAATAATAATTACCTTTCATTCGTTCTAATTCCTCTGATTGATAATATT
385 TA-AAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATATT
* * * *
20388268 TATT-TAGTCATCTTGAGAAATTTCAGAAA-ATTTTTGTCTACTACTGAGAATAATTCGTTCTAA
449 GATTCAAG-AATCTTGAGAAATTTCA-AAATATTTTTGTCTACTATTGAGAATAATTCGTTCTAA
* * * * * * *
20388331 TTTTGGTTATCTCAGTCCACTTCCAGACTCGAAGCATCAAAAGAGATAAAGTAGACGTTGCCACC
512 TTCTGGTTATCCCGGTCCACTTCAAGACTCGAAGCATCAAAAGAGAGAAAGTAGACATTACCACC
* * * * *
20388396 TTTCTATATTAAAAAC-AAATTAGAATTAACTATATTAATTGAAATTCTCTCACAAGGATACTTT
577 TTTC----TTAAAAACTATATT-G----AAC-ACA--AATTGTAA---T-T--CAACGATACTTA
* *
20388460 ACCGGATTT
624 ACCGAAATT
* ** * * *
20388469 GGAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAGCCCACCTAATCACTTCC
1 --AACATCAAGTCGAAAACT-GATTCCTCACAAAATTGACATCTCCAG-CCTCCTAATGACTTCC
* * * * * *
20388534 AAAAATCAATACTAAACTAATTACACATTAACTAAGTATAAATTTCACATTTAAATCAATTTCAC
62 AAACATCAATAATAAACCAATTACACATAAATTAAGTATAAATTTCATATTTAAATCAATTTCAC
* * * * * **
20388599 AAAAATCTAGAGAGTCAATTCATGAAGATGTTAAAATTTTAATTTCTTCAAATTACCTCACAAAT
127 AACAATCTGGAAAGTCAGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATTACCTCACAAAT
* * * * * *
20388664 CATGTTTGATGTAAGTAAATAAGACTAAAAACCTTCTAATAGGTCGATTTTGAGTTAGGACATCC
192 CATGTTTAATCT-TGTAAATAAGACTAAAAACCTTCTAATAGATCCATTTTGAGTTAGAACATCC
* * *
20388729 ATTGATTTGTCGATTTCCTCTCAAAATT-AAATATCCACCCTTAAACCACCTTAAGCTTTTGAAG
256 ATTGATTTGTGGATTTCCTCTCAAAATTCAAGT-TCCACCC-TAAAGCACCTTAAGCTTTTGAAG
* * * *
20388793 AGTATGACGTTGATAAAATAATCATGTGATTGACTCTCAAATCATGTAAAAATATTTCTAATCAT
319 AATATGACATTGATAAAAT-ATCATGTAATTGACCCTCAAATCATGTAAAAATATTTCTAATCAT
* * *
20388858 CATAAAAACTAGTTTAGAGCTAATAATTACCTTTGATTCATTCTAATTCCTTTGATTGAAAATAT
383 CATAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATAT
* *
20388923 TGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCATTCTAAT
448 TGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTATTGAGAATAATTCGTTCTAAT
* * * * * *
20388988 TCTGGTTAGCCCGATTCGCTTCAAGACTCGAAG-ATTCAATAGTG-GTAAAGTAGACATTACCAC
513 TCTGGTTATCCCGGTCCACTTCAAGACTCGAAGCA-TCAAAAGAGAG-AAAGTAGACATTACCAC
* * * *
20389051 CTTTC--AAAAGCTATATTAAACACAAATTGTAATTC-ACTATAC-TAATCGAAATT
576 CTTTCTTAAAAACTATATTGAACACAAATTGTAATTCAACGATACTTAACCGAAATT
* *
20389104 AACATCAAGTCGAAAACATGATTCCACACAAAATTGACAACTCCAGCCTCCTAATGACTTCCAAA
1 AACATCAAGTCGAAAAC-TGATTCCTCACAAAATTGACATCTCCAGCCTCCTAATGACTTCCAAA
* * *
20389169 CATCAATAATAAACCAATTACACATAAATTAGGTACAAATTTCTTATTTAAATCAATTTCACAAC
65 CATCAATAATAAACCAATTACACATAAATTAAGTATAAATTTCATATTTAAATCAATTTCACAAC
* * * * * * ** *
20389234 AATATGGAAAGTCGGTTCAAGAAGATGTTGAAATTCAAATTTTTTGAATTTATGTCACAAATCTT
130 AATCTGGAAAGTCAGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATCAT
* * *
20389299 GTTTAATCTTCGTAAATAAGGCTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAACATCTATT
195 GTTTAATCTT-GTAAATAAGACTAAAAACCTTCTAATAGATCCATTTTGAGTTAGAACATCCATT
*
20389364 GATTTGTGGATTTCCTCTCAAAATTCAAGTTCCACCACTAAAGCACCTTATGCTTTT-AAGGAAT
259 GATTTGTGGATTTCCTCTCAAAATTCAAGTTCCACC-CTAAAGCACCTTAAGCTTTTGAA-GAAT
* * * *
20389428 ATGACATTGATAAAATATCATATAATTGCCCCTCAAATCATGTAAAACTATTTCTAATCGTCATA
322 ATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATGTAAAAATATTTCTAATCATCATA
* *
20389493 AAAACAAGTTTAGAACTAATAATTACTTTTGATTCGTTCTAATTCCTTTGATTGATAATATTGAT
387 AAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATATTGAT
* * * * * *
20389558 TCATGAATCTTGAGAAAGTTCAAAATATTTTTATCCACTTTTGACAATAATTCGTTCTAATTCTG
452 TCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTATTGAGAATAATTCGTTCTAATTCTG
** * * * * *
20389623 GTTATCCCGGTCCTTTTCAAGACTTGAAGCTTCAACATAGGGAAAGTAGACATTACCACC-TTC-
517 GTTATCCCGGTCCACTTCAAGACTCGAAGCATCAAAAGAGAGAAAGTAGACATTACCACCTTTCT
* *
20389686 TAAAAGCTATATTGAACACAAATTTTAATTAACTATACTAATCGAAATTCACTCACAAAGATACT
582 TAAAAACTATATTGAACACAAA--TT--GTAA-T-T-C-AA-CG--A-T-ACT--------TA--
**
20389751 GTACCGGATTTGT
624 --ACC-GAAAT-T
* *
20389764 AACATCATGTCAAAAACATGATTCCTCACAAAATTGA-ACTCTCCAGCCTTCCTAATGACTTCCA
1 AACATCAAGTCGAAAAC-TGATTCCTCACAAAATTGACA-TCTCCAGCC-TCCTAATGACTTCCA
* * * * * * **
20389828 CATATCAACAATAAAACAATTACACATGAATTAATTATAAATTTCATATTTAAAGAAATTTCACA
63 AACATCAATAATAAACCAATTACACATAAATTAAGTATAAATTTCATATTTAAATCAATTTCACA
* *
20389893 ACAATCTGGAAAGACAGTTCATGAAGATGTTGAAATTCGAATTTCTTCAAATTACCTCACAAATC
128 ACAATCTGGAAAGTCAGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATC
* * *
20389958 ATGTTTAATGTTGTTAAATAAGACTGAAAACCTTCGAATAGATCCATTTTGAGTTAGAACATCCA
193 ATGTTTAATCTTG-TAAATAAGACTAAAAACCTTCTAATAGATCCATTTTGAGTTAGAACATCCA
*
20390023 TTAATTTGTGGATTTCCTCTCAAAATTCAAGATT-CACCCTTAAAGCACCTTAAGCTTTTGAAGA
257 TTGATTTGTGGATTTCCTCTCAAAATTCAAG-TTCCACCC-TAAAGCACCTTAAGCTTTTGAAGA
* * *
20390087 ATATGACATTGATAAAATATAATGTTATTGACCCTCAAATAATGTAAAAATATTTCTAATCATCA
320 ATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATGTAAAAATATTTCTAATCATCA
* *
20390152 TAAAAA-AAATTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATATTG
385 TAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATATTG
* * * * * * *
20390216 ATTTAGGAATCTTGTGAAATTTTAGAATATTTGTGTCTACTATTGA-ATATAATTTGTTCTAATT
450 ATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTATTGAGA-ATAATTCGTTCTAATT
* * *
20390280 TTGGTTATCCCGGTCCACTTCAAGACTCAAAGCATCAAAAGAGATAAAGTAGACATTACCACCTT
514 CTGGTTATCCCGGTCCACTTCAAGACTCGAAGCATCAAAAGAGAGAAAGTAGACATTACCACCTT
* * *
20390345 TCTATATTAAAAACAAATTATAATT-AACTATATTAATTGAAATTCACTCACAAGGATACTTTAC
579 TC----TTAAAAAC----TAT-ATTGAAC-ACA--AATTGTAATTCA---AC---GATACTTAAC
**
20390409 CGGATTTGT
626 C-GAAAT-T
* * * * *
20390418 AACATCAAGTCAAAAACTCGATTCCTCACAAAA-TCAAACTCTCCAGCCCTCTTAATCACTTCCA
1 AACATCAAGTCGAAAACT-GATTCCTCACAAAATTGACA-TCTCCAG-CCTCCTAATGACTTCCA
* * ** * *
20390482 AACACCAATACA-AAACTAATTACACATAAACCAAGTATAAATTTCACATTTAAATTAATTTCAC
63 AACATCAATA-ATAAACCAATTACACATAAATTAAGTATAAATTTCATATTTAAATCAATTTCAC
* * * * * *
20390546 AA-AATCTGGAAGGTCAGTTCATGAAGATGTTAAAATTCGAATTTCTTCAATTTGCCTCACAGAT
127 AACAATCTGGAAAGTCAGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATTACCTCACAAAT
* * ** * * * *
20390610 CATGTGTAATCTTGCTAAATAAGACTAAAAACATTCTAGCAGGTCGATTTTGATTTAGGACATCC
192 CATGTTTAATCTTG-TAAATAAGACTAAAAACCTTCTAATAGATCCATTTTGAGTTAGAACATCC
* * * *
20390675 ATTGATTTTTGGATTTCCTCTCAAAATTCAAGATCCACCTTTAAAGTACCTTAAGCTTTTGAAGA
256 ATTGATTTGTGGATTTCCTCTCAAAATTCAAGTTCCACC-CTAAAGCACCTTAAGCTTTTGAAGA
* * * * *
20390740 ATATGACATTGATAAAATAATCATGTGATTGACTCTCAATTCATTTAAAAAATATTTCTAATCAC
320 ATATGACATTGATAAAAT-ATCATGTAATTGACCCTCAAATCATGT-AAAAATATTTCTAATCAT
*
20390805 CATAAAAACAAGTTTAGAACTAATAATTACCTTTCATTCGTTCTAATTCCTTTGATTGAAAATAT
383 CATAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATAT
* *
20390870 TAATTCAAGAATCTTGAGAAATGTCAATAATA
448 TGATTCAAGAATCTTGAGAAATTTCAA-AATA
20390902 AACCAATTAC
Statistics
Matches: 2594, Mismatches: 365, Indels: 251
0.81 0.11 0.08
Matches are distributed among these distances:
630 3 0.00
631 231 0.09
632 243 0.09
633 44 0.02
634 1 0.00
635 10 0.00
636 6 0.00
637 2 0.00
638 1 0.00
639 1 0.00
640 2 0.00
641 1 0.00
643 8 0.00
644 1 0.00
645 4 0.00
646 3 0.00
650 5 0.00
651 4 0.00
652 1 0.00
653 190 0.07
654 251 0.10
655 470 0.18
656 274 0.11
657 7 0.00
658 3 0.00
659 6 0.00
660 206 0.08
661 501 0.19
662 46 0.02
665 1 0.00
666 14 0.01
667 11 0.00
668 4 0.00
669 3 0.00
670 9 0.00
671 11 0.00
672 7 0.00
673 4 0.00
674 5 0.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (632 bp):
AACATCAAGTCGAAAACTGATTCCTCACAAAATTGACATCTCCAGCCTCCTAATGACTTCCAAAC
ATCAATAATAAACCAATTACACATAAATTAAGTATAAATTTCATATTTAAATCAATTTCACAACA
ATCTGGAAAGTCAGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATCATG
TTTAATCTTGTAAATAAGACTAAAAACCTTCTAATAGATCCATTTTGAGTTAGAACATCCATTGA
TTTGTGGATTTCCTCTCAAAATTCAAGTTCCACCCTAAAGCACCTTAAGCTTTTGAAGAATATGA
CATTGATAAAATATCATGTAATTGACCCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAA
CAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATATTGATTCAA
GAATCTTGAGAAATTTCAAAATATTTTTGTCTACTATTGAGAATAATTCGTTCTAATTCTGGTTA
TCCCGGTCCACTTCAAGACTCGAAGCATCAAAAGAGAGAAAGTAGACATTACCACCTTTCTTAAA
AACTATATTGAACACAAATTGTAATTCAACGATACTTAACCGAAATT
Found at i:20399392 original size:660 final size:659
Alignment explanation
Indices: 20394964--20400111 Score: 6635
Period size: 661 Copynumber: 7.9 Consensus size: 659
20394954 NNNNNNNNNN
* * *
20394964 TTCCAAACATCAATAATAAACCAATTACACATAAATTAGGTATAAATTTCATATTTAAAGCAATT
1 TTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTTCATATTTAAATCAATT
*
20395029 TCACAACAATCTGGAAAGTCGGTTCATAAAGATGTTGAAATTACAATTTCTTCAAATTACCTCAC
66 TCACAACAATCTGGAAAGTCAGTTCATAAAGATGTTGAAATT-CAATTTCTTCAAATTACCTCAC
* *
20395094 AAACCATGTTTAATGTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAAC
130 AAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAAC
* * *
20395159 ATCCATTGATTTGTTGATTTCCTCTAAAAATTCAAGATTCATCCTTAAAGCACCTTAAGCTTTT-
195 ATCCATTGATTTGTTGATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGCACCTTAAGCTTTTG
* *
20395223 AAGGAATATGACATTGATAAAATATAATGTAATTGACCCTCAAATCGTGTAAAAATATTTCTAAT
260 AA-GAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATGTAAAAATATTTCTAAT
* * *
20395288 CATCATAAAAACAAGTTTAGAACTAATAATTACTTTTGATTCGTTCTAATTCCTTTGATTGATAA
324 CATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAA
* * * *
20395353 TATTGATTCATGAATCTTGAGAAAGTTCAAAATATTTTTGTCTACTTTTAACAATAATTCGTTCT
389 TATTGATTCAAGAATCTTGAGAAATTTCAAAATA-TTTTGTCTACTTTTGAGAATAATTCGTTCT
* * * * *
20395418 AATTCTGGTTATCCCGGTCCTTTTCAAGACTTGAAGCTTCAACATAGGGAAAGTAGACATTACCA
453 AATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTACCA
* * *
20395483 CCTTTCAAAAGCTATATTGAACACAAATTTTAATCAACTATACTAATCGAAATTCACTCACAAAG
518 CCTTTCAAAAGCTATATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCACAAAG
* *
20395548 ATACTTTACCGGATTTGTAACATCATGTCGAAAACAT-GATTCCTCACAAAATTGAA-CTCTCCA
583 ATACTTTACCGGATTTGTAACATCAAGTCGAAAAC-TCGATTCCTCACAAAA-TCAACCTCTCCA
*
20395611 GCCCTCCTAATGAC
646 GCCCTCCTAATCAC
* * * * * * *
20395625 TTCCACATATCAACAATAAAACAATTACACATGAATTAA-TAATAAATTTCATATTTAAAGCAAT
1 TTCCAAACATCAATAATAAACCAATTACACATAAACTAAGT-ATAAATTTCATATTTAAATCAAT
* *
20395689 TTCACAACAATCTGGAAAGTCGGTTCATAAAGATGTTGAAATTACAATTTCTTGAAATTACCTCA
65 TTCACAACAATCTGGAAAGTCAGTTCATAAAGATGTTGAAATT-CAATTTCTTCAAATTACCTCA
* *
20395754 CAAACCATGTTTAATGTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAA
129 CAAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAA
* * * * *
20395819 CATCCATTAATTTGTGGATTTCTTCTCAAAATTCAAGATTCACCCGTAAAGCACCTTAAGCTTTT
194 CATCCATTGATTTGTTGATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGCACCTTAAGCTTTT
*
20395884 GAAGAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATAATGTAAAAATATTTCTAAT
259 GAAGAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATGTAAAAATATTTCTAAT
* *
20395949 CATCATAAAAA-AAATTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGATAA
324 CATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAA
* * * * * * *
20396013 TATTGATTTAGGAATCTTGAGAAATTTTAGAATATTTGTGTCTACTATTGAGTATAATTTGTTCT
389 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTT-TGTCTACTTTTGAGAATAATTCGTTCT
* * * * *
20396078 AATTTTGGTTATCCCGGTCCACTTCAAGACTCAAAGCATCAAAAGAGATAAAGTAGACATTACCA
453 AATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTACCA
* * * *
20396143 CCTTT------CTATATTAAAAACAAATTATAATTAACTATATTAATTGAAATTCACTCACAAGG
518 CCTTTCAAAAGCTATATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCACAAAG
*
20396202 ATACTTTACCGGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAGC
583 ATACTTTACCGGATTTGTAACATCAAGTCGAAAACTCGATTCCTCACAAAATCAACCTCTCCAGC
*
20396267 CCTCTTAATCAC
648 CCTCCTAATCAC
* * * * * *
20396279 TTCCAAACACCAATACA-AAACTAATTCCACATAAACCAAGTATAAATTTCACATTTAAATTAAT
1 TTCCAAACATCAATA-ATAAACCAATTACACATAAACTAAGTATAAATTTCATATTTAAATCAAT
* * * * * *
20396343 TTCACAA-AATCTGGAAGGTCAGTTCATGAAGATGTTAAAATCCGAATTTCTTCAATTTGCCTCA
65 TTCACAACAATCTGGAAAGTCAGTTCATAAAGATGTTGAAATTC-AATTTCTTCAAATTACCTCA
* * * * ** * * *
20396407 CAGATCATGTTTAATCTTGCTAAATAAGACTAAAAACATTCTAGCAGGTCGATTTTGAGTTAGGA
129 CAAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAA
* *
20396472 CATCCGTTGATTT-TTGGATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGTACCTTAAGCTTT
194 CATCCATTGATTTGTT-GATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGCACCTTAAGCTTT
* * * *
20396536 TGAAGAATATGACATTGATAAAATAATCATGTGATTGACTCTCAATTCATTTAAAAAATATTTCT
258 TGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACCCTCAAATCATGT-AAAAATATTTCT
* * *
20396601 AATCATCATAAAAACAAGTTTAGAACTAATAATTACCTTTCATTCGTTCGAATTCCTTTGATTGA
321 AATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGA
* * *
20396666 AAATATTAATTCAAAAATCTTGAGAAATTTCAAAATATCTTTGTCTACTTTTGAGAATAATTCAT
386 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATAT-TTTGTCTACTTTTGAGAATAATTCGT
* * * * ** * *
20396731 TCTAATTCTGGTTAGCCCGATTCGCTTCAAGACTCGAAGAATGAATAGAGGTAAAGTAGACATTA
450 TCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTA
* *
20396796 CCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTCACTATAC---T----A---A-T--C-
515 CCACCTTTCAAAAGCTATATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCACA
* ** **
20396847 --G--A----A----A--T-TAACATCAAGTCGAAAACAT-GATTCCACACAAAATTGACAACTC
580 AAGATACTTTACCGGATTTGTAACATCAAGTCGAAAAC-TCGATTCCTCACAAAATCAACCTCTC
* * *
20396896 CAGCACTTCTAATGAC
644 CAGCCCTCCTAATCAC
* *
20396912 TTCCAAACATCAATAATAAACCAATTACACATAAATTAGGTATAAATTTCATATTTAAATCAATT
1 TTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTTCATATTTAAATCAATT
* * * *
20396977 TCACAACAATATGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTTCTTGAAATTACCTCAC
66 TCACAACAATCTGGAAAGTCAGTTCATAAAGATGTTGAAATTC-AATTTCTTCAAATTACCTCAC
* *
20397042 AAATCATGTTTAATCTTCGTTAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAAC
130 AAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAAC
* * * *
20397107 ATCCATTGATTTGTGGATTTCCTCTAAAAATTCAAGATTCATCCTTAAAGCACCTTAAGCTTTT-
195 ATCCATTGATTTGTTGATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGCACCTTAAGCTTTTG
* *
20397171 ATGGAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCGTGTAAAAATATTTCTAAT
260 A-AGAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATGTAAAAATATTTCTAAT
* * * *
20397236 CATCATAAAAACAAGTATAGAACTAATAATTACTTTTGATTCGTTCTAATTCCTTTGATTGATAA
324 CATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAA
* * * *
20397301 TATTGATTCATGAATCTTGAGAAAGTTCAAAATATTTTTTTCTACTTTTGACAATAATTCGTTCT
389 TATTGATTCAAGAATCTTGAGAAATTTCAAAATA-TTTTGTCTACTTTTGAGAATAATTCGTTCT
* * * * * *
20397366 AATTCTGGTTATCCCGGTCCTTTTCAAGACTTGAAGCTTCAACATAGGGAAAGTAGATATTACCA
453 AATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTACCA
* * *
20397431 CCTTTCAAAAGCTATATTGAACACATATTTTAATTAACTATACTAATCGAAATTCACTCACAAAG
518 CCTTTCAAAAGCTATATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCACAAAG
* *
20397496 ATACTTTACCGGATTTGTAACATCATGTCGAAAACAT-GATTCCTCACAAAATTGAA-CTCTCCA
583 ATACTTTACCGGATTTGTAACATCAAGTCGAAAAC-TCGATTCCTCACAAAA-TCAACCTCTCCA
*
20397559 GCCCTCCTAATGAC
646 GCCCTCCTAATCAC
* * * * * * *
20397573 TTCCACATATCAACAATAAAACAATTACACATGAATTAA-TAATAAATTTCATATTTAAAGCAAT
1 TTCCAAACATCAATAATAAACCAATTACACATAAACTAAGT-ATAAATTTCATATTTAAATCAAT
*
20397637 TTCACAACAATCTGGAAAGTCGGTTCATAAAGATGTTGAAATTACAATTTCTTCAAATTACCTCA
65 TTCACAACAATCTGGAAAGTCAGTTCATAAAGATGTTGAAATT-CAATTTCTTCAAATTACCTCA
* *
20397702 CAAACCATGTTTAATGTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAA
129 CAAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAA
* * * * *
20397767 CATCCATTAATTTGTGGATTTCTTCTCAAAATTCAAGATTCACCCCTAAAGCACCTTAAGCTTTT
194 CATCCATTGATTTGTTGATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGCACCTTAAGCTTTT
*
20397832 GAAGAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATAATGTAAAAATATTTCTAAT
259 GAAGAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATGTAAAAATATTTCTAAT
*
20397897 CATCATAAAAA-AA-TTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGATAA
324 CATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAA
* * * * * * *
20397960 TATTGATTTAGGAATCTTGAGAAATTTTAGAATATTTGTGTCTACTATTGAGTATAATTTGTTCT
389 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTT-TGTCTACTTTTGAGAATAATTCGTTCT
* * * * *
20398025 AATTTTGGTTATCCCGGTCCCCTTCAAGACTCAAAGCATCAAAAGAGATAAAGTAGACATTACCA
453 AATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTACCA
* * * *
20398090 CCTTT------CTATATTAAAAACAAATTATAATTAACTATATTAATTGAAATTCACTCACAAGG
518 CCTTTCAAAAGCTATATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCACAAAG
*
20398149 ATACTTTACCGGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAGC
583 ATACTTTACCGGATTTGTAACATCAAGTCGAAAACTCGATTCCTCACAAAATCAACCTCTCCAGC
*
20398214 CCTCTTAATCAC
648 CCTCCTAATCAC
* * * * * *
20398226 TTCCAAACACCAATACA-AAACTAATTCCACATAAACCAAGTATAAATTTCACATTTAAATTAAT
1 TTCCAAACATCAATA-ATAAACCAATTACACATAAACTAAGTATAAATTTCATATTTAAATCAAT
* * * * * *
20398290 TTCACAA-AATCTGGAAGGTCAGTTCATGAAGATGTTAAAATCCGAATTTCTTCAATTTGCCTCA
65 TTCACAACAATCTGGAAAGTCAGTTCATAAAGATGTTGAAATTC-AATTTCTTCAAATTACCTCA
* * * * ** * * *
20398354 CAGATCATGTTTAATCTTGCTAAATAAGACTAAAAACATTCTAGCAGGTCGATTTTGAGTTAGGA
129 CAAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAA
* *
20398419 CATCCGTTGATTT-TTGGATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGTACCTTAAGCTTT
194 CATCCATTGATTTGTT-GATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGCACCTTAAGCTTT
* * * * *
20398483 TGAAGAATATGACATTGATAAAATAATCATGTGATTGACTCTCGATTCATTTAAAAAATATTTCT
258 TGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACCCTCAAATCATGT-AAAAATATTTCT
* * * *
20398548 AGTCATCATAAAAACAAGTTTAGAACTAATAATTACCTTTCATTCGTCCTAATTCCTTTGATTGA
321 AATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGA
* *
20398613 AAATATTAATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAACAATTCGT
386 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATA-TTTTGTCTACTTTTGAGAATAATTCGT
* * * * * *
20398678 TCTAATTCTTGTTATCCCAGTCCTCTTCAAGACTCGAAGCTTTAAAAGAGGTAAAATAAATATTA
450 TCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTA
* * * * * * **
20398743 CCACATTTCCAAAGCTAAATTAAACAAAAATTATAATTAACTATATTAATCGAATTTCACTCATT
515 CCACCTTTCAAAAGCTATATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCACA
** * * *
20398808 GGGATACTTTACCGGATATGTAACATCAAGTCAAAAACTCAATTCCTCACAAAATCAACCTCTCC
580 AAGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTCGATTCCTCACAAAATCAACCTCTCC
20398873 AGCCCTCCTAATCAC
645 AGCCCTCCTAATCAC
* * * * * *
20398888 TTTCAAACATCAATACTAAACTAATTTCACATAAACTAAGTATAAATTTCAAATTTAAGTCAATT
1 TTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTTCATATTTAAATCAATT
* * * * * *
20398953 TCATAAAAATCTGGAAAGCCAGTTCATAAAGATGTTAAAATTCAAATTCTTCAAATAACCTCACA
66 TCACAACAATCTGGAAAGTCAGTTCATAAAGATGTTGAAATTCAATTTCTTCAAATTACCTCACA
* * *
20399018 AATCATGTTTAATCCTGGT-AATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTGACAACA
131 AATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAACA
* * *
20399082 TCCATTAATTTGTTGATTTCCTCTCAAAATTCAAGATCCAGCCATAAAGCACCTTAAGCTTTTGA
196 TCCATTGATTTGTTGATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGCACCTTAAGCTTTTGA
* ** * * *
20399147 AGAATAAGACATTGATAAAATAATCACATGATTGACTCTCAAATCATGTTAAAATATTTCTAATC
261 AGAATATGACATTGATAAAAT-ATCATGTAATTGACCCTCAAATCATGTAAAAATATTTCTAATC
20399212 ATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAAT
325 ATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAAT
*
20399277 ATTGATTCAAGAATCCTT-AGAAATTTCAAAATATTGTTGTTTACTTTTGAGAATAATTCGTTCT
390 ATTGATTCAAGAAT-CTTGAGAAATTTCAAAATATT-TTGTCTACTTTTGAGAATAATTCGTTCT
* *
20399341 AATTCTGGTTGTCCCAGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTACCA
453 AATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTACCA
*
20399406 CATTTCAAAAGCTATATTAAACAC--ATTATAATTAACTATACTAATCGAAATTCACTCACAAAG
518 CCTTTCAAAAGCTATATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCACAAAG
* * * ** **
20399469 ATACTTTACGGGATTTGTAACATTAAGTCGAAAACTCAATTCCTCACAAAATTGACCTCTCCATT
583 ATACTTTACCGGATTTGTAACATCAAGTCGAAAACTCGATTCCTCACAAAATCAACCTCTCCAGC
*
20399534 GCTCCTAATCAC
648 CCTCCTAATCAC
** * *
20399546 TTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAGGTTTCACATTTAAATCAGTT
1 TTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTTCATATTTAAATCAATT
*
20399611 TCACAACAATCTGGAAAGTCAGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATTACCTCAC
66 TCACAACAATCTGGAAAGTCAGTTCATAAAGATGTTGAAATTC-AATTTCTTCAAATTACCTCAC
* * * * *
20399676 AAATCATGTTTAATCTTGATAAATTAGAATAAAAACCTTCTAATAGATCCATTTTGAATTAG-A-
130 AAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAAC
* * * * * * * *
20399739 A--C----ATTTGTAGATTTCCACTCAAAATTTATGATCCACCATTAAAGTACCTTATGCTTTTC
195 ATCCATTGATTTGTTGATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGCACCTTAAGCTTTTG
* * *
20399798 AAGAATATGACATTGATAAAATATCATGTAATTGACTCTAAAATCATATAAAAATATTTCT-ATC
260 AAGAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATGTAAAAATATTTCTAATC
* * * *
20399862 TATCATAAAAACAAGTTTAGAAATAATAATTACCTCTAATTCGTTCTATTTCCTTTTATT-AACA
325 -ATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAA-A
* * * * * *
20399926 ATATTGATTCAAGAATCTTGTGAAATTTCAACATTTTTTTTCTACATTTGAGAATAATTCATTCT
388 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTGTCTACTTTTGAGAATAATTCGTTCT
* ** * *
20399991 AATTATGGTTATCCCTATCCTCTTCAAGACTCGAAGCTTCAATAGAGGTAAAGTAGACATTACCT
453 AATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTACCA
* * * *
20400056 CATTTCCAAAGCTATATTAAACCCAAATTATAATTAATTATACTAATCGAAATTCA
518 CCTTTCAAAAGCTATATTAAACACAAATTATAATTAACTATACTAATCGAAATTCA
20400112 AGACCCACCC
Statistics
Matches: 3917, Mismatches: 482, Indels: 185
0.85 0.11 0.04
Matches are distributed among these distances:
632 223 0.06
633 133 0.03
634 182 0.05
635 2 0.00
636 1 0.00
639 1 0.00
640 1 0.00
642 1 0.00
643 1 0.00
644 1 0.00
645 1 0.00
646 1 0.00
648 1 0.00
649 1 0.00
650 114 0.03
651 122 0.03
652 285 0.07
653 372 0.09
654 217 0.06
655 31 0.01
656 317 0.08
657 5 0.00
658 200 0.05
659 201 0.05
660 411 0.10
661 809 0.21
662 251 0.06
663 32 0.01
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (659 bp):
TTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTTCATATTTAAATCAATT
TCACAACAATCTGGAAAGTCAGTTCATAAAGATGTTGAAATTCAATTTCTTCAAATTACCTCACA
AATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAACA
TCCATTGATTTGTTGATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGCACCTTAAGCTTTTGA
AGAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATGTAAAAATATTTCTAATCA
TCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATA
TTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTGTCTACTTTTGAGAATAATTCGTTCTAAT
TCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTACCACCT
TTCAAAAGCTATATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCACAAAGATA
CTTTACCGGATTTGTAACATCAAGTCGAAAACTCGATTCCTCACAAAATCAACCTCTCCAGCCCT
CCTAATCAC
Found at i:20401421 original size:661 final size:661
Alignment explanation
Indices: 20400105--20402439 Score: 3463
Period size: 661 Copynumber: 3.5 Consensus size: 661
20400095 ATACTAATCG
* * * *
20400105 AAATTCAAGACCCACCCTTAAAGCACCTTAAGCTTTTGAAGAATAAGATATTGATAAAATAATCA
1 AAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCA
* * * * *
20400170 TTTAATTGATTCTAAAATCATGTAAAAATATTTTTAATCATCATAAAAATAAGTTTAGAAATAAT
66 TGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAAT
* * *
20400235 AATTACCTTTGGTACGTTCTAATTCTTTTGATT-AATAATATTGATTT-AAGAATCTTGAGAAAT
131 AATTACCTTTGATTCGTTCTAATTCCTTTGATTGAA-AATATTG-TTTCAAGAATCTTGAGAAAT
* *
20400298 TGT-AAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCTAATTCTAGTTATCCC-AGTCATCT
194 T-TCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCTAATTCTGGTTATCCCGA-TCCTCT
* * * * * * *
20400361 TGAAGACTTGAAGCTTCAACAGAGGTAAAATGGACATTACCACCTTTTAAAATCTATATTAAACG
257 TCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCAAAAGCTATATTAAACA
*
20400426 CAAATTATAATTAAGTATACTAATCGAAATTCACTCACAAATATACTTTACC-AGATTTGTAACC
322 CAAATTATAATTAACTATACTAATCGAAATTCACTCACAAATATACTTTACCGA-ATTTGTAACC
*
20400490 TCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTACAGCTCTCCTAATCACTTCCAAACAT
386 TCAAGTCAAAAACTCGATTCCTCACAAAATGAACCTCTACAGCTCTCCTAATCACTTCCAAACAT
*
20400555 CAATACTAAAACAACTACACATAAACAAAGTATAAATTTCACATTTAAATCAATTTCACAAAAAT
451 CAATACTAAAACAATTACACATAAACAAAGTATAAATTTCACATTTAAATCAATTTCACAAAAAT
* *
20400620 CTCAAAATTCGGTTCATGAAGATGTTAAAATTCAAATTTCATCGAATTACCTCACAAATCATGTT
516 CTGAAAAGTCGGTTCATGAAGATGTTAAAATTCAAATTTCATCGAATTA-CTCACAAATCATGTT
20400685 TAATCTTGGTAAATAAGACTAAAAACCTGCTAATAGGTCCATTTTGAGTTAGGACATCTATTGAT
580 TAATCTTGGTAAATAAGACTAAAAACCTGCTAATAGGTCCATTTTGAGTTAGGACATCTATTGAT
* *
20400750 TTGTGGATTTCCTGTCG
645 TTGTGGATTTCCTCTCA
* * * *
20400767 AAATTCAAGATCCATCC-TTAAAGCAACGTAAGCTTTTGAAGAATATGA-GTTGATGAAATAATC
1 AAATTCAAGATCCA-CCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATC
* * * * *
20400830 ATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCTTGAGAAAAATAAGTTTGGAAATAA
65 ATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAA
*
20400895 TAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATGTTGTTTCAAGAATCTTGAGAAATT
130 TAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATATTGTTTCAAGAATCTTGAGAAATT
20400960 TCAAAATATTTTTGTCTACTTTTGAGAATAACTT-GTTCTAATTCTGGTTATCCCGATCCTCTTC
195 TCAAAATATTTTTGTCTACTTTTGAGAATAA-TTCGTTCTAATTCTGGTTATCCCGATCCTCTTC
* * *
20401024 AAGACACGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCGAGAGCTATATTAAACACA
259 AAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCAAAAGCTATATTAAACACA
*
20401089 AATTATAATTAGCTATACTAATCGAAATTCACTCACAAATATACTTTACCGAATTTGTAACCTCA
324 AATTATAATTAACTATACTAATCGAAATTCACTCACAAATATACTTTACCGAATTTGTAACCTCA
* * * *
20401154 ACTCAAAAACTCGATTCCTTACAAAATGAACCTCTTCAGCTCTCCTAATCACTTCCAAATATCAA
389 AGTCAAAAACTCGATTCCTCACAAAATGAACCTCTACAGCTCTCCTAATCACTTCCAAACATCAA
*
20401219 TACTAAAACAATTACACATAAACAAACTATAAATTTCACATTTAAATCAATTTCACAAAAATCTG
454 TACTAAAACAATTACACATAAACAAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATCTG
*
20401284 AAAAGTCGGTTCATGAAGATGTTAAGATTCAAATTTCATCGAATTACGTCACAAATCATGTTTAA
519 AAAAGTCGGTTCATGAAGATGTTAAAATTCAAATTTCATCGAATTAC-TCACAAATCATGTTTAA
* * * * *
20401349 TCTTGGTAAATAAGACTAAAAACCTTCTAATAGATCCATTATGAGTTAGGACATCTATTAATTTT
583 TCTTGGTAAATAAGACTAAAAACCTGCTAATAGGTCCATTTTGAGTTAGGACATCTATTGATTTG
20401414 TGGATTTCCTCTCA
648 TGGATTTCCTCTCA
* *
20401428 AAATTCAAGATCCACCATTAAAGCACCTTCAGCTTTTGAAGAATATGACATTGATAAAATAATTA
1 AAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCA
* * * * *
20401493 TGTAACTGGCTCTCAAATCATGTAAAAATATTTCTAATCATTATCAAAACAAGTTTAGAAATGAT
66 TGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAAT
**
20401558 AATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATATTGACTCAAGAATCTTGAGAAATTT
131 AATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATATTGTTTCAAGAATCTTGAGAAATTT
* * * * *
20401623 CAAAATATTTTTTTCTGCTTTTGAGAATAATTCGTTCTAATTCGGGTTATCCCGGTCCTCTTCTA
196 CAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCTAATTCTGGTTATCCCGATCCTCTTCAA
* * * * * * *
20401688 GACTTGAAGCTTCAATAGAGGTGAAGTAGACATTTCCACCATTCAAAAGCTATATTTAACAAAAA
261 GACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCAAAAGCTATATTAAACACAAA
* * * * * *
20401753 TTAAAATTAACTATACTAATCGAAATTCACTTACAAAAAAACATTACCTG-ATTTGTAACATCAA
326 TTATAATTAACTATACTAATCGAAATTCACTCACAAATATACTTTACC-GAATTTGTAACCTCAA
** * * * * *
20401817 GTTGAAAAGTCGATTCCTCACAAAATTG-ACCTCTCCA-CCCTGCTAATAACTTCCAAACATCAA
390 GTCAAAAACTCGATTCCTCACAAAA-TGAACCTCTACAGCTCTCCTAATCACTTCCAAACATCAA
* * * *
20401880 TACTAAACCAATTACACATAAA-AAAGTATAAATTTCACATTTAATTCAACTTCATAAAAATCTG
454 TACTAAAACAATTACACATAAACAAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATCTG
* * *
20401944 AAAAGTTGGTTCATGAAGATGTTAAAATTCAAATTTCATCCAATTATCTCACAAAACATGTTTAA
519 AAAAGTCGGTTCATGAAGATGTTAAAATTCAAATTTCATCGAATTA-CTCACAAATCATGTTTAA
20402009 TCTTGGTAAATAAGACTAAAAACCTGCTAATAGGTCCATTTTGAGTTAGGACATCTATTGATTTG
583 TCTTGGTAAATAAGACTAAAAACCTGCTAATAGGTCCATTTTGAGTTAGGACATCTATTGATTTG
20402074 TGGATTTCCTCTCA
648 TGGATTTCCTCTCA
*
20402088 AAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAGTCA
1 AAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCA
* *
20402153 TGTAATTGACTCTCATATCATGTAAAAAAATTTCTAATCATCATAAAAACAAGTTTAGAAATAAT
66 TGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAAT
* * * * *
20402218 AATTACCTTTGATTCATTGTAATTCATTCGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTT
131 AATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATATTGTTTCAAGAATCTTGAGAAATTT
* *
20402283 CAAAATATTTTTGTCTACTTTCGAGAA-AAGTTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCA
196 CAAAATATTTTTGTCTACTTTTGAGAATAA-TTCGTTCTAATTCTGGTTATCCCGATCCTCTTCA
* * * * *
20402347 AGACTCGAAGCTTTAACAGAGGTAAAGTAGACATTACTACATTTCGAAAGCTAGATTAAACACAA
260 AGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCAAAAGCTATATTAAACACAA
* *
20402412 ATTATAATTAACAATTCTAATCGAAATT
325 ATTATAATTAACTATACTAATCGAAATT
20402440 NNNNNNNNNN
Statistics
Matches: 1509, Mismatches: 149, Indels: 32
0.89 0.09 0.02
Matches are distributed among these distances:
659 2 0.00
660 491 0.33
661 638 0.42
662 373 0.25
663 5 0.00
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (661 bp):
AAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCA
TGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAAT
AATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATATTGTTTCAAGAATCTTGAGAAATTT
CAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCTAATTCTGGTTATCCCGATCCTCTTCAA
GACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCAAAAGCTATATTAAACACAAA
TTATAATTAACTATACTAATCGAAATTCACTCACAAATATACTTTACCGAATTTGTAACCTCAAG
TCAAAAACTCGATTCCTCACAAAATGAACCTCTACAGCTCTCCTAATCACTTCCAAACATCAATA
CTAAAACAATTACACATAAACAAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATCTGAA
AAGTCGGTTCATGAAGATGTTAAAATTCAAATTTCATCGAATTACTCACAAATCATGTTTAATCT
TGGTAAATAAGACTAAAAACCTGCTAATAGGTCCATTTTGAGTTAGGACATCTATTGATTTGTGG
ATTTCCTCTCA
Found at i:20404057 original size:623 final size:620
Alignment explanation
Indices: 20402540--20405604 Score: 2730
Period size: 640 Copynumber: 4.8 Consensus size: 620
20402530 NNNNNNNNNN
* *
20402540 TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACGTTTGATTCATTGTAATT-CATTC
1 TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAATTCCTTTC
*
20402604 GATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAAAA
66 -ATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGT-TACTTTCGAG--AA
* * *
20402669 GTTCATTCTAATTCTGGTTATCCCGGTCCTCTTCATGACTCGAAGCTTCAACAGAGGTAAAGTAG
127 GTTCATTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAG
* * * *
20402734 ACATTACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCA
192 ACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCA
*
20402799 CTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGAC
257 CTCACAAAGATACTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGAC
* * * * * ** *
20402864 -CCTCCATCCCTCCAAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATA
322 TTCTCCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACAAATTACACATAAACTAAGTATA
*** * ** ** * * *
20402928 AATTTTGTATTTAAATCAATTTCACAAAAATTTGGAAAGTCGGTTCATGAAGATGTTGAAATTCA
387 AATTTCACATTTAAATTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCG
* *
20402993 AATTTCTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAAT
452 AATTTATTCAAATTACCTCACAAATC-------A---T-G----T-----T---TAA-TT-T--T
* *
20403058 AGATCTATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCA
490 -G----------AGTTAGAACATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCA
* *
20403123 TTAAAACACCTTAAGCTTTTGAAT-AATATGACATTGATAAAATAATCATGTAATTGACTCTGAA
544 TTAAAGCACCTTAAGCTTTTG-ATGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAA
*
20403187 ACCATGTAAAAATA
607 ATCATGTAAAAATA
* * * * * *
20403201 TTTCTAATCATCATATAAACAAGTTTAGAGATAATAATTACCTTTGGTTCGTTGTAATTCATTTG
1 TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAATTCCTTTC
20403266 ATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA-------T--TTTC-----G---
66 ATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTTACTTTCGAGAAGTTC
*
20403314 -TTCTAATTCTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGACAT
131 ATTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGACAT
*
20403378 TACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCA
196 TACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCACTCA
* * * * * * *
20403443 CAAAGATACTTTACCGGATTTGTAAGATTAAGTCGAAAAGTCGATTCCTCCCAAAATTGACTTCT
261 CAAAGATACTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACTTCT
*
20403508 CCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATT
326 CCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACAAATTACACATAAACTAAGTATAAATT
* *
20403573 TCACATTTAAATTAATTTCACAAAAATTCAGATAGTCGAATCATGAATATGTTAAAATTGGAATT
391 TCACATTTAAATTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCGAATT
20403638 TATTCAAATTACCTCACAAATCATGTTTAATTTTGAGTTAGAACATCCTTTGATTTGTGGATTTC
456 TATTCAAATTACCTCACAAATCATGTTTAATTTTGAGTTAGAACATCCTTTGATTTGTGGATTTC
*
20403703 CTCTCAAAATTCAAGATCCACCATTAAAGCACATTATA-CTTTTGATGAATATGACATTGATAAA
521 CTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTTGATGAATATGACATTGATAAA
* *
20403767 ATATCATGTAGTTGACTCTCCAATCATGTAAAAATA
585 ATATCATGTAATTGACTCTCAAATCATGTAAAAATA
* * * * * *
20403803 TTTCTAGTCATCATAAAAACAAGTTCAGAAATAACAATTTCCTTTGATTCTTTCTAATTCCTTTC
1 TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAATTCCTTTC
* * *
20403868 ATTCATAATATTGATTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTTTACTTTCGAGAATTG
66 ATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTG-TTACTTTCGAGAA--G
* * * *
20403933 TTCATTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGA
128 TTCATTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGA
* * * *
20403998 CATTACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCAC
193 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* * *
20404063 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCATAAAATCGACC
258 TCACAAAGATACTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACT
* * * * **
20404128 TCTCCATCCCATCTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAAGTATAA
323 TCTCCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACAAATTACACATAAACTAAGTATAA
* * ************************
20404193 ATTGCACA--AAAATCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
388 ATTTCACATTTAAAT-T-A----------------------ATTTCACAAAAATTCAGAAAGTCG
******************************************************** *
20404256 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTTAGAGT
429 AATCATGAATATGTTAAAATTCGAATTTATTCAAATTACCTCACAAATCATGTTTAATTTTGAGT
*
20404321 TAGGACAT-CTATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAA
494 TAGAACATCCT-TTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAA
* *
20404385 GCTTTTGAAGAATATGACATTGATAAAATAGTCATGTAATTGACTCTCAAATCATGTAAAAAAA
558 GCTTTTGATGAATATGACATTGATAAAATA-TCATGTAATTGACTCTCAAATCATGTAAAAATA
* *
20404449 TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACGTTTGATTCATTGTAATT-CATTC
1 TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAATTCCTTTC
*
20404513 GATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAAAA
66 -ATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGT-TACTTTCGAG--AA
* * *
20404578 GTTCATTCTAATTCTGGTTATCCCGGTCCTCTTCATGACTCGAAGCTTCAACAGAGGTAAAGTAG
127 GTTCATTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAG
* * * *
20404643 ACATTACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCA
192 ACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCA
*
20404708 CTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGAC
257 CTCACAAAGATACTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGAC
* * * * * ** *
20404773 -CCTCCATCCCTCCAAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATA
322 TTCTCCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACAAATTACACATAAACTAAGTATA
*** * * ** * * *
20404837 AATTTTGTATTTAAATCAATTTCACAAAAATTTAGAAAGTCGGTTCATGAAGATGTTGAAATTCA
387 AATTTCACATTTAAATTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCG
* *
20404902 AATTTCTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAAT
452 AATTTATTCAAATTACCTCACAAATC-------A---T-G----T-----T---TAA-TT-T--T
* *
20404967 AGATCTATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCA
490 -G----------AGTTAGAACATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCA
* *
20405032 TTAAAACACCTTAAGCTTTTGAAT-AATATGACATTGATAAAATAATCATGTAATTGACTCTGAA
544 TTAAAGCACCTTAAGCTTTTG-ATGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAA
*
20405096 ACCATGTAAAAATA
607 ATCATGTAAAAATA
* * * * * *
20405110 TTTCTAATCATCATATAAACAAGTTTAGAGATAATAATTACCTTTGGTTCGTTGTAATTCATTTG
1 TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAATTCCTTTC
20405175 ATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA-------T--TTTC-----G---
66 ATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTTACTTTCGAGAAGTTC
*
20405223 -TTCTAATTCTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGACAT
131 ATTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGACAT
*
20405287 TACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCA
196 TACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCACTCA
* * * * * * *
20405352 CAAAGATACTTTACCGGATTTGTAAGATTAAGTCGAAAAGTCGATTCCTCCCAAAATTGACTTCT
261 CAAAGATACTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACTTCT
*
20405417 CCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATT
326 CCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACAAATTACACATAAACTAAGTATAAATT
* *
20405482 TTAGATTTAAATTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCGAATT
391 TCACATTTAAATTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCGAATT
20405547 TATTCAAATTACCTCACAAATCATGTTTAATTTTGAGTTAGAACATCCTTTGATTTGT
456 TATTCAAATTACCTCACAAATCATGTTTAATTTTGAGTTAGAACATCCTTTGATTTGT
20405605 NNNNNNNNNN
Statistics
Matches: 1943, Mismatches: 360, Indels: 260
0.76 0.14 0.10
Matches are distributed among these distances:
602 125 0.06
603 109 0.06
604 1 0.00
610 1 0.00
612 4 0.00
613 2 0.00
614 2 0.00
616 2 0.00
617 4 0.00
618 6 0.00
619 1 0.00
621 6 0.00
622 1 0.00
623 237 0.12
626 2 0.00
630 2 0.00
631 2 0.00
634 2 0.00
640 346 0.18
641 266 0.14
644 5 0.00
645 161 0.08
646 322 0.17
647 6 0.00
648 3 0.00
651 9 0.00
653 2 0.00
661 307 0.16
662 7 0.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.32
Consensus pattern (620 bp):
TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAATTCCTTTC
ATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTTACTTTCGAGAAGTTC
ATTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGACAT
TACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCACTCA
CAAAGATACTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACTTCT
CCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACAAATTACACATAAACTAAGTATAAATT
TCACATTTAAATTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCGAATT
TATTCAAATTACCTCACAAATCATGTTTAATTTTGAGTTAGAACATCCTTTGATTTGTGGATTTC
CTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGATGAATATGACATTGATAAAA
TATCATGTAATTGACTCTCAAATCATGTAAAAATA
Found at i:20405327 original size:640 final size:645
Alignment explanation
Indices: 20404312--20405577 Score: 1869
Period size: 661 Copynumber: 1.9 Consensus size: 645
20404302 NNNNNNNNCC
* * * *
20404312 ATTTAGAGTTAGGACATCTATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
1 ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCATTAAAA
* *
20404377 CACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAGTCATGTAATTGACTCTCAAATCATGT
66 CACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAACCATGT
*
20404442 AAAAAAATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACGTTTGATTCATTGTAAT
131 AAAAAAATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAAT
*
20404507 TCATTCGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCG
196 TCATTCGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA------T-TA-TTTC-
* *
20404572 AGAAAAGTTCATTCTAATTCTGGTTATCCCGGTCCTCTTCATGACTCGAAGCTTCAACAGAGGTA
252 -----AG-T--TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTA
* * * *
20404637 AAGTAGACATTACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGA
309 AAATAGACATTACCACATTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGA
*
20404702 AATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAA
374 AATTCACTCACAAAGATACTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAA
* * ** *
20404767 ATCGAC-CCTCCATCCCTCCAAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTA
439 ATCGACTCCTCCAGCCCTCCAAATCACTTCCAAACATCAATAATAAACAAATTACACATAAACTA
* ** *
20404831 AGTATAAATTTT-GTATTTAAATCAATTTCACAAAAATTTAGAAAGTCGGTTCATGAAGATGTTG
504 AGTATAAATTTTAG-ATTTAAATCAATTTCACAAAAATTCAGAAAGTCGAATCATGAAGATGTTA
*
20404895 AAATTCAAATTTCTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAAC
568 AAATTCAAATTTATTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAAC
20404960 TTCTAATAGATCT
633 TTCTAATAGATCT
20404973 ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCATTAAAA
1 ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCATTAAAA
* *
20405038 CACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTGAAACCATGT
66 CACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAACCATGT
* * * * *
20405103 AAAAATATTTCTAATCATCATATAAACAAGTTTAGAGATAATAATTACCTTTGGTTCGTTGTAAT
131 AAAAAAATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAAT
*
20405168 TCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA-T-TTTC-G-TTCTAA
196 TCATTCGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTATTTCAGTTTCTAA
* *
20405229 TTCTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGACATTACCACC
261 TTCTGGTTATCCCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGACATTACCACA
*
20405294 TTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCACAAAGAT
326 TTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCACTCACAAAGAT
* * * * * * * *
20405359 ACTTTACCGGATTTGTAAGATTAAGTCGAAAAGTCGATTCCTCCCAAAATTGACTTCTCCAGCCC
391 ACTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACTCCTCCAGCCC
* * *
20405424 TTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTTTAGATT
456 TCCAAATCACTTCCAAACATCAATAATAAACAAATTACACATAAACTAAGTATAAATTTTAGATT
* * *
20405489 TAAATTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCGAATTTATTCAA
521 TAAATCAATTTCACAAAAATTCAGAAAGTCGAATCATGAAGATGTTAAAATTCAAATTTATTCAA
*
20405554 ATTACCTCACAAATCATGTTTAAT
586 ATTACCCCACAAATCATGTTTAAT
20405578 TTTGAGTTAG
Statistics
Matches: 552, Mismatches: 51, Indels: 24
0.88 0.08 0.04
Matches are distributed among these distances:
640 173 0.31
641 144 0.26
642 1 0.00
644 1 0.00
651 4 0.01
653 1 0.00
661 228 0.41
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (645 bp):
ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCATTAAAA
CACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAACCATGT
AAAAAAATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAAT
TCATTCGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTATTTCAGTTTCTAA
TTCTGGTTATCCCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGACATTACCACA
TTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCACTCACAAAGAT
ACTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACTCCTCCAGCCC
TCCAAATCACTTCCAAACATCAATAATAAACAAATTACACATAAACTAAGTATAAATTTTAGATT
TAAATCAATTTCACAAAAATTCAGAAAGTCGAATCATGAAGATGTTAAAATTCAAATTTATTCAA
ATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAATAGATCT
Found at i:20409789 original size:659 final size:657
Alignment explanation
Indices: 20409012--20410333 Score: 2141
Period size: 659 Copynumber: 2.0 Consensus size: 657
20409002 NNNNNNNGTT
* * *
20409012 GGTTCAAGAAGTTGAAATTCAAGTTTCTTCAAATTACTTTACAAATCATGTTTAATCTTGATAAA
1 GGTTCAAGAAGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAAA
* *
20409077 TAAGAGTAAATACCTTCTAATAGATCCATTTAGAGTTAGGACATCTACTGATTTGTGGATTTCCT
66 TAAGAGTAAATACCTTCTAATAGATCCATTTAGAGTTAGAACATCTATTGATTTGTGGATTTCCT
*
20409142 CTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGAGAAAATA
131 CTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATA
20409207 GTCATGTAATTGACTCTCAAATCATGTAAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAA
196 -TCATGTAATTGACTCTCAAATCATGTAAAAATA-TTTCTAATCATCATAAAAACAAGTTTAGAA
* *
20409271 ATAATAATTACCTTTGATTCGTTCTAATTCATTCGATTGAAAATATTGGTTCAAGAATCTTGAGA
259 ATAATAATTACCTTTGATTCGTTGTAATTCATTCGATTGAAAATATTGGTTCAAGAATCTTAAGA
* * * *
20409336 AATTTCAAAATATCTTTGTCTACTTTCGAGAAAAGTTCGTTCTAATTTTGGTTATCGCGGTCCTC
324 AATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCGTTCTAATTCTGGTTATCCCGGTCCTC
* * *
20409401 TTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACTACATTTCGAAAGCTAGATTAAAC
389 TTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAAC
*
20409466 ACAAATTATAATTAACAATTCTCATCGAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACA
454 ACAAATTATAATTAACAATTCTAATCGAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACA
20409531 TCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTCCATCCCATCTAATCACTTCCAAACAA
519 TCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTCCATCCC-TCTAATCACTTCCAAAC-A
* * *
20409596 T-AATACTAAACAAATTACGTATAAACTAATTATAAATTACACATTTAAATCAATTTCACAAAAA
582 TCAATACTAAACAAATTACATATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAA
*
20409660 -TCCGAAATGTT
647 TTCCGAAA-GTC
* * *
20409671 GGTTCAAGAAGTTGAAATTCAAGTTTCTTCAAATTACTTTACAAATCATGTTTAATCTTGATAAA
1 GGTTCAAGAAGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAAA
* * **
20409736 TAAGAGTAAATACCTTCTAATAGTTCCATTTAGAGTTAGGACATCTGCTGATTTGTGGATTTCCT
66 TAAGAGTAAATACCTTCTAATAGATCCATTTAGAGTTAGAACATCTATTGATTTGTGGATTTCCT
* *
20409801 CTCAAATTTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGAGAAAATA
131 CTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATA
20409866 GTCATGTAATTGACTCTCAAATCATGTAAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAA
196 -TCATGTAATTGACTCTCAAATCATGTAAAAATA-TTTCTAATCATCATAAAAACAAGTTTAGAA
* *
20409930 TTAATAATTACCTTTGATTCGTTGTAATTCATTCGATTGAAAATATTGGTTCAAGAATCTTGAGA
259 ATAATAATTACCTTTGATTCGTTGTAATTCATTCGATTGAAAATATTGGTTCAAGAATCTTAAGA
* * * *
20409995 AATTTCAAAATATGTTTGTCTACTTTCGAGAAAAGTTCGTTCTAATTTTGGCTATCCCGGTCCTC
324 AATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCGTTCTAATTCTGGTTATCCCGGTCCTC
* * * *
20410060 TTCAAGACTCGAAGCTTCAACAAAGGTAAAGTAGACATTACTACATTTCGAAAGCTAGATTAAAC
389 TTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAAC
20410125 ACAAATTATAATTAACAATTCTAATCGAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACA
454 ACAAATTATAATTAACAATTCTAATCGAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACA
20410190 TCAAGTCAAAAACTCGATTCCTCACAAAATCGACC-CTCCATCCCTCCTAATCACTTCCAAACAT
519 TCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTCCATCCCT-CTAATCACTTCCAAACAT
* * *
20410254 CAATGCTAAACAAATTACATATAAACTAAGTAAAAATTTCATATTTAAATCAATTTCACAAAAAT
583 CAATACTAAACAAATTACATATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAAT
**
20410319 TTGGAAAGTC
648 TCCGAAAGTC
20410329 GGTTC
1 GGTTC
20410334 NNNNNNNNNN
Statistics
Matches: 641, Mismatches: 19, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
657 3 0.00
658 89 0.14
659 549 0.86
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.33
Consensus pattern (657 bp):
GGTTCAAGAAGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAAA
TAAGAGTAAATACCTTCTAATAGATCCATTTAGAGTTAGAACATCTATTGATTTGTGGATTTCCT
CTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATA
TCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAAT
AATAATTACCTTTGATTCGTTGTAATTCATTCGATTGAAAATATTGGTTCAAGAATCTTAAGAAA
TTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCGTTCTAATTCTGGTTATCCCGGTCCTCTT
CAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACAC
AAATTATAATTAACAATTCTAATCGAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATC
AAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTCCATCCCTCTAATCACTTCCAAACATCAA
TACTAAACAAATTACATATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATTCC
GAAAGTC
Found at i:20411390 original size:623 final size:624
Alignment explanation
Indices: 20410674--20426112 Score: 14140
Period size: 659 Copynumber: 24.2 Consensus size: 624
20410664 AATATTTTCG
* * * * *
20410674 TTCTAATTTTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAACGGAGGTAAAATAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * * *
20410739 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTACCTATACTAATCGAAACTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
* * * * * * * * * * *
20410804 AAAGTTACTTTACCGGAGTTGTAAGATTAAGTCGAAAAGTCGATTCCTCCCAAAATTGACTTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * *
20410869 CAGCCCTTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* * ***
20410934 CAGATTTAAATTAATTTCACAAAAATTCAGAAAGTCAAATCATGAATATGTTAAAATTCGAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
*
20410999 ATTCAAATTACGTCACAAATCATGTTTAATTTT-GAGTTAGAACATCCTTTGATTTGTGGATTTC
326 ATTCAAATTACCTCACAAATCATGTTTAATTTTAGAGTTAGAACATCCTTTGATTTGTGGATTTC
* * *
20411063 CTCTTAAAATTCAAGGTCCACCATTAAAGCACATTATA-CTTTTGATGAATATGACATTGATAAA
391 CTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTTGATGAATATGACATTGATAAA
* * * *
20411127 ATATCATGTAGTTGACTCTCCAATCATGTAAAAATATTTCTAGTCATCATAAAAACAAGTTCAGA
455 ATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGA
* * * * * * *
20411192 AATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAATATTGATTCAAGAATCTTAAG
520 AATAATAATTACCTTTGATTCGTTGTAATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAG
* *
20411257 AAATTTCAAAATATTTTTGTTTACTTTCGAGAATTGTTCA
585 AAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCA
* *
20411297 TTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20411362 ACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
*
20411427 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCATAAAATCGACCTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * *
20411492 CATCCCATCTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAAGTATAAATTG
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* ** * * * * *
20411557 CACA--AAAATCCGAAATGTTGGTTCAAGAAGTT--GAAATTCAAGTTTCTTCAAATTACT-TTA
261 CACATTTAAAT-C--AAT-TT--CACAA-AAATTCAGAAAGTC--GGTTCAT-GAA-TA-TGTTA
* * ** * * * *
20411617 CAAATCATGTGTAATCTTGA-T-AAATAAGAGT-A-AATACCTTCTAATAGATCCATTTAGAGTT
314 -AAAT--T-CG-AAT-TT-ATTCAAATTA-CCTCACAA-ATCATGT-TTA-AT---TTTAGAGTT
*
20411678 AGGACAT-CTATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAG
365 AGAACATCCT-TTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAG
*
20411742 CTTTTGAAGAATATGACATTGATAAAATAGTCATGTAATTGACTCTCAAATCATGTAAAAA-ATT
429 CTTTTGATGAATATGACATTGATAAAATA-TCATGTAATTGACTCTCAAATCATGTAAAAATA-T
* * * * *
20411806 TTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACGTTTCATTCATTGTAATT-CATTCG
492 TTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTGTAATTCCTTTC-
*
20411870 ATTGAAAATATTGGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAA-A
556 ATTGAAAATATT-GGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATA
20411934 G-TCA
620 GTTCA
* *
20411938 TTCT-ATTCTGGGTATCCCGGTCCTC-TCATGACTCG-AGC-TC-ACAGAGGTAAAGTAGACA-T
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20411997 ACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
20412062 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC-CTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * *
20412126 CATCCCTCCTAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
*** * ** * * *
20412191 TGTATATAAATCAATTTCACAAAAATTTGGAAAGTCGGTTCATGAAGATGTTGAAATTCAAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
* *
20412256 CTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAATAGATC
326 ATTCAAATTACCTCACAAATC-------A---T-G----T-----T---TAA----T--T---T-
* *
20412321 TATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCATTAAA
358 TA----GAGTTAGAACATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAA
* * *
20412386 ACACCTTAAGCTTTTGAAT-AATATGACATTGATAAAATAATCATGTAATTGACTCTGAAACCAT
419 GCACCTTAAGCTTTTG-ATGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAATCAT
* * *
20412450 GTAAAAATATTTCTAATCATCATATAAACAAGTTTAGAGATAATAATTACCTTTGGTTCGTTGTA
482 GTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTGTA
* *
20412515 ATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA--------T--TTT
547 ATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTTT
20412570 C-------G----
612 CGAGAATAGTTCA
* * *
20412572 TTCTAATTCTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* *
20412637 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
* * * * * * * * * *
20412702 AAAGATACTTTACCGGATTTGTAAGATTAAGCCGAAAAGTCGATTCCTCCCAAAATTGACTTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * *
20412767 CAGCCCTTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* * **
20412832 CACATTTAAATTAATTTCACAAAAATTCAGATAGTCGAATCATGAATATGTTAAAATTCGAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
20412897 ATTCAAATTACCTCACAAATCATGTTTAATTTT-GAGTTAGAACATCCTTTGATTTGTGGATTTC
326 ATTCAAATTACCTCACAAATCATGTTTAATTTTAGAGTTAGAACATCCTTTGATTTGTGGATTTC
*
20412961 CTCTCAAAATTCAAGATCCACCATTAAAGCACATTATA-CTTTTGATGAATATGACATTGATAAA
391 CTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTTGATGAATATGACATTGATAAA
* * *
20413025 ATATCATGTAATTGACTCTCCAATCATGTAAAAATATTTCTAGTCATCATAAAAACAAGTTCAGA
455 ATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGA
* * * * * * *
20413090 AATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAATATTGATTCAAGAATCTTAAG
520 AATAATAATTACCTTTGATTCGTTGTAATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAG
* *
20413155 AAATTTCAAAATATTTTTGTTTACTTTCGAGAATTGTTCA
585 AAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCA
* *
20413195 TTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20413260 ACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
20413325 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * *
20413390 CATCCCATCTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAAGTATAAATTG
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* ** * * * * *
20413455 CACA--AAAATCCGAAATGTTGGTTCAAGAAGTT--GAAATTCAAGTTTCTTCAAATTAAT-TTA
261 CACATTTAAAT-C--AAT-TT--CACAA-AAATTCAGAAAGTC--GGTTCAT-GAA-T-ATGTTA
* * ** * * * *
20413515 CAAATCATGTGTAATCTTGA-T-AAATAAGAGT-A-AATACCTTCTAATAGATCCATTTAGAGTT
314 -AAAT--T-CG-AAT-TT-ATTCAAATTA-CCTCACAA-ATCATGT-TTA-AT---TTTAGAGTT
*
20413576 AGGACAT-CTATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAG
365 AGAACATCCT-TTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAG
* *
20413640 CTTTTGAAGAATATGACATTGATAAAATAGTCATGTAATTGACTCTCAAATCATGTAAAAAAATT
429 CTTTTGATGAATATGACATTGATAAAATA-TCATGTAATTGACTCTCAAATCATGTAAAAATATT
* * *
20413705 TCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACGTTTGATTCATTGTAATT-CATTCGA
493 TCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTGTAATTCCTTTC-A
* *
20413769 TTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAAAAGT
557 TTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGT
20413834 TCA
622 TCA
*
20413837 TTCTAATTCTGGTTATCCCGGTCCTCTTCATGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20413902 ACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
20413967 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC-CTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * *
20414031 CATCCCTCCAAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
*** * * * *
20414096 TGTATTTAAATCAATTTCACAAAAATTTAGAAAGTCGGTTCATGAAGATGTTGAAATTCAAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
* *
20414161 CTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAATAGATC
326 ATTCAAATTACCTCACAAATC-------A---T-G----T-----T---TAA----T--T---T-
* *
20414226 TATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCATTAAA
358 TA----GAGTTAGAACATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAA
* *********************************
20414291 ACACCTTAAGC---T--T---T-TGA-A-T-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
419 GCACCTTAAGCTTTTGATGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGT
*****************************************************************
20414344 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
484 AAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTGTAAT
*****************************************************************
20414409 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
549 TCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTTTCG
***********
20414474 NNNNNNNNNNN
614 AGAATAGTTCA
************************* * *
20414485 NNNNNNNNNNNNNNNNNNNNNNNNNC-TC---A----AAGCTTCAACGGAGGTAAAATAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * * *
20414542 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTACCTATACTAATCGAAACTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
* * * * * * * * * * *
20414607 AAAGTTACTTTACCGGAGTTGTAAGATTAAGTCGAAAAGTCGATTCCTCCCAAAATTGACTTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * *
20414672 CAGCCCTTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* * ***
20414737 CAGATTTAAATTAATTTCACAAAAATTCAGAAAGTCAAATCATGAATATGTTAAAATTCGAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
*
20414802 ATTCAAATTACGTCACAAATCATGTTTAATTTT-GAGTTAGAACATCCTTTGATTTGTGGATTTC
326 ATTCAAATTACCTCACAAATCATGTTTAATTTTAGAGTTAGAACATCCTTTGATTTGTGGATTTC
* * *
20414866 CTCTTAAAATTCAAGGTCCACCATTAAAGCACATTATA-CTTTTGATGAATATGACATTGATAAA
391 CTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTTGATGAATATGACATTGATAAA
* *
20414930 ATATCATGTAATTGACTCTCCAATCATGTAAAAATATTTC-AAGTCATCATAAAAACAAGTTCAG
455 ATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAA-TCATCATAAAAACAAGTTTAG
* * * * * * *
20414994 AAATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAATATTGTTTCAAGAATCTTAA
519 AAATAATAATTACCTTTGATTCGTTGTAATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAA
* *
20415059 GAAATTTCAAAATATTTTCGTTTACTTTCGAGAATAGTTCA
584 GAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCA
* *
20415100 TTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20415165 ACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
20415230 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * **
20415295 CATCCCATCTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTTGGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* * * *
20415360 CACATTTAAATCAATTTCACAAAAA-TCCGAAATGTTGGTTCAAG-A-A-GTTGAAATTC-AAGT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAA-GTCGGTTCATGAATATGTTAAAATTCGAA-T
* * * *
20415420 TTCTTCAAATTACTTTACAAATCATGTGTAATCTTGATAAATAAGAGTAAATACCGTCTAATAGA
324 TTATTCAAATTACCTCACAAATCATGTTTAA--TT--T---T-AGAGT---TA--G------A-A
20415485 TCCATTTAGAGTTAGGACATCTATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTA
369 --C------A--T----C--CT-TTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTA
*
20415550 AAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAGTCATGTAATTGACTCTCAAATCA
417 AAGCACCTTAAGCTTTTGATGAATATGACATTGATAAAATA-TCATGTAATTGACTCTCAAATCA
* *
20415615 TGTAAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTAACTTTGATTCATTG
481 TGTAAAAATA-TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTG
* *
20415679 TAATT-CATTCGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTAC
545 TAATTCCTTTC-ATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTAC
*
20415743 TTTCGAGAAAAGTTCA
609 TTTCGAGAATAGTTCA
*
20415759 TTCTAATTCTGGTTATCCCGGTCCTCTTCATGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20415824 ACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
*
20415889 AACGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC-CTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * *
20415953 CATCCCTCCAAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
*** * * * *
20416018 TGTATTTAAATCAATTTCACAAAAATTTAGAAAGTCGGTTCATGAAGATGTTGAAATTCAAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
* *
20416083 CTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAATAGATC
326 ATTCAAATTACCTCACAAATC-------A---T-G----T-----T---TAA----T--T---T-
* *
20416148 TATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCATTAAA
358 TA----GAGTTAGAACATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAA
* * *
20416213 ACACCTTAAGCTTTTGAAT-AATATGACATTGATAAAATAATCATGTAATTGACTCTGAAACCAT
419 GCACCTTAAGCTTTTG-ATGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAATCAT
* * *
20416277 GTAAAAATATTTCTAATCATCATATAAACAAGTTTAGAGATAATAATTACCTTTGGTTCGTTGTA
482 GTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTGTA
* *
20416342 ATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA--------T--TTT
547 ATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTTT
20416397 C-------G----
612 CGAGAATAGTTCA
* * *
20416399 TTCTAATTCTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* *
20416464 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
* * * * * * * * *
20416529 AAAGATACTTTACCGGATTTGTAAGATTAAGTCGAAAAGTCGATTCCTCCCAAAATTGACTTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * *
20416594 CAGCCCTTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* * **
20416659 CACATTTAAATTAATTTCACAAAAATTCAGATAGTCGAATCATGAATATGTTAAAATTCGAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
20416724 ATTCAAATTACCTCACAAATCATGTTTAATTTT-GAGTTAGAACATCCTTTGATTTGTGGATTTC
326 ATTCAAATTACCTCACAAATCATGTTTAATTTTAGAGTTAGAACATCCTTTGATTTGTGGATTTC
*
20416788 CTCTCAAAATTCAAGATCCACCATTAAAGCACATTATA-CTTTTGATGAATATGACATTGATAAA
391 CTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTTGATGAATATGACATTGATAAA
* * *
20416852 ATATCATGTAATTGACTCTCCAATCATGTAAAAATATTTCTAGTCATCATAAAAACAAGTTCAGA
455 ATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGA
* * * * * * *
20416917 AATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAATATTGATTCAAGAATCTTAAG
520 AATAATAATTACCTTTGATTCGTTGTAATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAG
*
20416982 AAATTTCAAAATATTTTTGTTTACTTTCGAGAATAGTTCA
585 AAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCA
* *
20417022 TTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20417087 ACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
*
20417152 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCATAAAATCGACCTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * *
20417217 CATCCCATCTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAGGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* * * *
20417282 CACATTTAAATCAATTTCACAAAAA-TCCGAAATGTTGGTTCAAG-A-A-GTTGAAATTC-AAGT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAA-GTCGGTTCATGAATATGTTAAAATTCGAA-T
* * *
20417342 TTCTTCAAATTACTTTACAAATCATGTTTAATCTTGATAAATAGGAGCAAATACGTTCTAATAGA
324 TTATTCAAATTACCTCACAAATCATGTTTAA--TT--T---T---AG-----A-G---T--TAG-
* * *
20417407 TCCATTTAGAGTTAGGACATCTATTGATTTGTGGATTTCCTCTCAAAATTCAATATCCACCGTTA
367 ---A---ACA--T----C--CT-TTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTA
* *
20417472 AAGCACCTTAAGCTTTAGAAGAATATGACATTGATAAAATAGTCATGTAATTGACTCTCAAATCA
417 AAGCACCTTAAGCTTTTGATGAATATGACATTGATAAAATA-TCATGTAATTGACTCTCAAATCA
*
20417537 TGTAAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTG
481 TGTAAAAATA-TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTG
* *
20417601 TAATT-CATTCGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTAC
545 TAATTCCTTTC-ATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTAC
* *
20417665 TTTCGAGAAAAGTTCG
609 TTTCGAGAATAGTTCA
20417681 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * * *
20417746 ACTACATTTCGAAAGCTAGATTAAACACAAATTAGAATTAACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
* *
20417811 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCAATTCGTCACAAAATCGACCTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * *
20417876 CATCCCTCCTAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
** ** * * *
20417941 CGTATTTAAATCAATTTCACAAAAATTTGGAAAGTCGGTTCATGAAGATGTTGAAATTCAAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
* *
20418006 CTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAATAGATC
326 ATTCAAATTACCTCACAAATCATGTTTAA--TT--T---T---AG---------------AG---
* * *
20418071 TATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACTATTAAA
363 ---TT--AG--A-A-CATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAA
* * * *
20418136 ACACCTTAAGCTTTTGAAT-AATATGACATTGAGAAAATAATCATGTAATTGACTCTGAAACCAT
419 GCACCTTAAGCTTTTG-ATGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAATCAT
* *
20418200 GTAAAAATATTTCTAATCATCATATAAACAAGTTTAGAAATAATAATTACCTTTGGTTCGTTGTA
482 GTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTGTA
* *
20418265 ATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA--------T--TTT
547 ATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTTT
20418320 C-------G----
612 CGAGAATAGTTCA
* * * *
20418322 TTCTAATTCTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAATAGAGGTAAAATAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20418387 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTAACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
* * * * * * * *
20418452 AAAGATACTTTACCAGATTTGTAAGATTAAGTCGAAAAGTCGATTCCTCCCAAAATTGACTTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * *
20418517 CAGCCCTTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* * **
20418582 CACATTTAATTTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCGAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
*
20418647 ATTCAAATTGCCTCACAAATCATGTTTAATTTT-GAGTTAGAACATCCTTTGATTTGTGGATTTC
326 ATTCAAATTACCTCACAAATCATGTTTAATTTTAGAGTTAGAACATCCTTTGATTTGTGGATTTC
*
20418711 CTCTCAAAATTCAAGATCCACCATTAAAGCACATTATA-CTTTTGATGAATATGACATTGATAAA
391 CTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTTGATGAATATGACATTGATAAA
* * *
20418775 ATATCATGTAATTGACTCTCCAATCATGTAAAAATATTTCTAGTCATCATAAAAACAAGTTCAGA
455 ATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGA
* * * * * * *
20418840 AATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAATATTGATTCAAGAATCTTAAG
520 AATAATAATTACCTTTGATTCGTTGTAATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAG
*
20418905 AAATTTCAAAATATTTTTGTTTACTTTCGAGAATAGTTCA
585 AAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCA
* *
20418945 TTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20419010 ACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
20419075 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGA-C-CT-
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * *
20419137 -ATCCCTTATAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* * * *
20419201 CACATTTAAATCAATTTCACAAAAA-TCCGAAATGTTGGTTCAAG-A-A-GTTGAAATTC-AAGT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAA-GTCGGTTCATGAATATGTTAAAATTCGAA-T
* * * *
20419261 TTCTTCAAATTACTTTACAAATCATGTGTAATCTTGATAAATAAGAGTAAATACCGTCTAATAGA
324 TTATTCAAATTACCTCACAAATCATGTTTAA--TT--T---T-AGAGT---TA--G------A-A
*
20419326 TCCATTTAGAGTTAGGACATCTATTGATTTGTGGATTTCCTCTCAAAATTCAATATCCACCATTA
369 --C------A--T----C--CT-TTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTA
* *
20419391 AAGCACCTTAAGCTTTTGAAGATTATGACATTGATAAAATAGTCATGTAATTGACTCTCAAATCA
417 AAGCACCTTAAGCTTTTGATGAATATGACATTGATAAAATA-TCATGTAATTGACTCTCAAATCA
*
20419456 TGTAAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTG
481 TGTAAAAATA-TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTG
* * *
20419520 TAATT-CATTCGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATATTTGTCTAC
545 TAATTCCTTTC-ATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTAC
* *
20419584 TTTCGAGAAAAGTTCG
609 TTTCGAGAATAGTTCA
20419600 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20419665 ACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
* *
20419730 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCAATTCGTCACAAAATCGACCTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * *
20419795 CATCCCTCCTAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
** ** * * *
20419860 CGTATTTAAATCAATTTCACAAAAATTTGGAAAGTCGGTTCATGAAGATGTTGAAATTCAAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
* *
20419925 CTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAATAGATC
326 ATTCAAATTACCTCACAAATC-------A---T-G----T-----T---TAA--T-T--T---T-
* *
20419990 CATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCATTAAA
359 -A----GAGTTAGAACATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAA
* * * *
20420055 ACACCTTAAGCTTTTGAAT-AATATGACATTGAGAAAATAATCATGTAATTGACTCTGAAACCAT
419 GCACCTTAAGCTTTTG-ATGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAATCAT
* *
20420119 GTAAAAATATTTCTAATCATCATATAAACAAGTTTAGAAATAATAATTACCTTTGGTTCGTTGTA
482 GTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTGTA
* *
20420184 ATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA--------T--TTT
547 ATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTTT
20420239 C-------G----
612 CGAGAATAGTTCA
* * * *
20420241 TTCTAATTCTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAATAGAGGTAAAATAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20420306 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCAAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
* * * * * * * *
20420371 AAAGATACTTTACCGGATTTGTAAGATTAAGTCAAAAAGTCGATTCCTCCCAAAATTGACTTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * * *
20420436 CAGCCCTTCTAATCACTTTCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* * **
20420501 CACATTTAATTTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCGAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
*
20420566 ATTCAAATTGCCTCACAAATCATGTTTAATTTT-GAGTTAGAACATCCTTTGATTTGTGGATTTC
326 ATTCAAATTACCTCACAAATCATGTTTAATTTTAGAGTTAGAACATCCTTTGATTTGTGGATTTC
*
20420630 CTCTCAAAATTCAAGATCCACCATTAAAGCACATTATA-CTTTTGATGAATATGACATTGATAAA
391 CTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTTGATGAATATGACATTGATAAA
* * *
20420694 ATATCATGTAATTGACTCTCCAATCATGTAAAAATATTTCTAGTCATCATAAAAACAAGTTCAGA
455 ATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGA
* * * * * * *
20420759 AATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAATATTGATTCAAGAATCTTAAG
520 AATAATAATTACCTTTGATTCGTTGTAATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAG
* *
20420824 AAATTTCAAAATATTTTTGTTTACTTTCAAGAATAGTTCA
585 AAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCA
* *
20420864 TTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20420929 ACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
20420994 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * *
20421059 CATCCCATCTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* * *
20421124 CACATTTAAATCAATTTCACAAAAA-TCTA-AAATGTTGGTTCAAG-A-A-GTTGAAATTC-AAG
261 CACATTTAAATCAATTTCACAAAAATTC-AGAAA-GTCGGTTCATGAATATGTTAAAATTCGAA-
* *
20421183 TTTCTTCAAATTACTTTACAAATCATGTTTAATCTTGATAAATAAGAGTAAATACCTTCTAATAG
323 TTTATTCAAATTAC-CT-C--A-CA-----AATC-------AT----G---------T-T--TA-
* *
20421248 ATCCATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAGAATTCAAGATCCACCATT
354 AT---TTTAGAGTTAGAACATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATT
* *
20421313 AAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATATAATTGACTCTCAAATC
416 AAAGCACCTTAAGCTTTTGATGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAATC
*
20421378 ATGTAAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACGTTTGATTCGTT
480 ATGTAAAAATA-TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTT
* * *
20421442 GTAATT-CATTCAATTGAAGATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTA
544 GTAATTCCTTTC-ATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTA
*
20421506 CTTTCGAGAAAAGTTCA
608 CTTTCGAGAATAGTTCA
20421523 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20421588 ACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
20421653 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* ** *
20421718 CATCCCTCCTAATTGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
** ** * * *
20421783 CGTATTTAAATCAATTTCACAAAAATTTGGAAAGTCGGTTCATGAAGATGTTGAAATTCAAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
* *
20421848 CTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATA-ACATCTAATAGAT
326 ATTCAAATTACCTCACAAATCATGTTTAA--TT--T---T-AGAGT---TAGA-A-C------AT
* ** ** * ** ** * * * *
20421912 CCATTTAGAGTTAGAACATCCATTTATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCATTAA
372 CC-TTT-GA-TTTG----TGGATTT-CCTCTCAAAAT--T--CAAGA-TC--CA-CCA--TTAAA
* *
20421977 AACACCTTAAGCTTTTGAAT-AATATGACATTGATAAAATAATCATGTAATTGACTCTAAAATCA
419 -GCACCTTAAGCTTTTG-ATGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAATCA
* *
20422041 TGTAAAAATATTTCTAATCATCATATAAACAAGTTTAGAAATAATAATTACCTTTGGTTCGTTGT
481 TGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTGT
* *
20422106 AATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA--------T--TT
546 AATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTT
20422161 TC-------G----
611 TCGAGAATAGTTCA
* * * * *
20422164 TTCTAATTCTGGTTATCTCGGCCCTCTTCAAGACTCAAAGGTTCAACAGAGGTAAAATAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20422229 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCAT
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
* * * * * * * * * *
20422294 AAAGATACTTTACCGGATTTGTAAGATTAAGTCGAAAAGTCAATTCCTCCCAAAATTGACTTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * * * *
20422359 CAGCCCATCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* *
20422424 CACATTTAAATTAATTTCACAAAAATTCAGAAAGTCGAATT-ATGAATATGTTAAAATTCGAATT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCG-GTTCATGAATATGTTAAAATTCGAATT
20422488 TATTCAAATTACCTCACAAATCATGTTTAATTTT-GAGTTAGAACATCCTTTGATTTGTGGATTT
325 TATTCAAATTACCTCACAAATCATGTTTAATTTTAGAGTTAGAACATCCTTTGATTTGTGGATTT
* *
20422552 CCTCTCAAAATTCAGGATCCACCATTAAAGCACATTATA-CTTTTGATGAATATGACATTGATAA
390 CCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTTGATGAATATGACATTGATAA
* * *
20422616 AATATCATGTAATTGACTCTCCAATCATGTAAAAATATTTCTAGTCATCATAAAAACAAGTTCAG
454 AATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAG
* * * * * * * *
20422681 AAATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAATATTGATTCAAGAATTTTAA
519 AAATAATAATTACCTTTGATTCGTTGTAATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAA
*
20422746 GAAATTTCAAAATATTTTTGTTTACTTTCGAGAATAGTTCA
584 GAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCA
* *
20422787 TTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* *
20422852 ACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTTACAATTCTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
20422917 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * *
20422982 CATCCCATCTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* * *
20423047 CACATTTAAATCAATTTCACAAAAA-TCCGAAA-TGCTGGTTCAAG-A-A-GTTGAAATTC-AAG
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGT-C-GGTTCATGAATATGTTAAAATTCGAA-
* *
20423106 TTTCTTCAAATTACTTTACAAATCATGTTTAATCTTGATAAATAAGAGTAAATACCTTCTAATAG
323 TTTATTCAAATTAC-CT-C--A-CA-----AATC-------AT----G---------T-T--TA-
*
20423171 ATCCATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATT
354 AT---TTTAGAGTTAGAACATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATT
* * *
20423236 AACGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATATAATTGACTCTCAAATC
416 AAAGCACCTTAAGCTTTTGATGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAATC
20423301 ATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTG
480 ATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTG
** * * * *
20423366 TAATTTATTTGATTGAAAATATTGGCTCAAGAATCATGAGAAATTTCAAAATATTTTTGTCTACT
545 TAATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACT
*
20423431 TTCGAGAATAGTTCG
610 TTCGAGAATAGTTCA
* * *
20423446 TTCTAATTCTGGTTTTCTCGGTCCTCTTCAAGACTCGAAACTTCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * * * *
20423511 ACCACCTTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCAAAACTCACTCAT
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
* *
20423576 AAAGATAGTTTACCATATTTGTAACATCAAGTCAAGAACTCGATTCCTCACAAAATCGACCTCTC
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* * *
20423641 CAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
196 CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
* * * * * *
20423706 CACATTTAAATCAATTTCACAAAAATCCGGAAAGTCAGTTCATGAAGATGTTGAAATTCAAATTT
261 CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
*
20423771 CTTCAAATTACCTCATAAATCATGTTTAATCTTGGTAAATAAGAGTAAATACCTTCTAATAGATC
326 ATTCAAATTACCTC----A-CA-----AATC-------AT----G---------T-T--TA-AT-
* *
20423836 CATTTAGAGTTAGAACAT-CTATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCCACCTTTAA
356 --TTTAGAGTTAGAACATCCT-TTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAA
* * * * *
20423900 ATCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAT-TTCTAA-TCA-TC-C---T-A--
418 AGCACCTTAAGCTTTTGATGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATG
* * ** * ** ** * *
20423955 -AAAACA-AGTT-TAGA--A--ATAATAATTAGCTTTGGCTCATTGTAATTA-ATTTGATT-GAA
483 TAAAA-ATATTTCTA-ATCATCATAAAAACAAG-TTTAG-AAATAATAATTACCTTTGATTCG-T
* ** * * *
20424011 AGT-ATT-GGTTCA---AGAATCTT-G----AGAAAT-TTGA-AAATATT---------TTTGTC
543 TGTAATTCCTTTCATTGAAAATATTGGTTCAAG-AATCTTAAGAAAT-TTCAAAATATTTTTGTC
* *
20424055 TACTTTCGAGAACAGTTCG
606 TACTTTCGAGAATAGTTCA
* *
20424074 TTCTAATTCTGGTTATCCCAGTCCTCTTCGAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * * *
20424139 ACCACCTTTCGAAAGATAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCACTCAG
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
* * *
20424204 AAATATAGTTTACCAAATTTGTAACATCAAGTCAAAAACTCTATTCCTCACAAAATCGACCTC-C
131 AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
* *
20424268 GCAGCCCTACTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTAT--A--
196 -CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATT
* *
20424329 --A-A-TT---TC-A----A-AAAAATTCAGAAAGTCGATTCATGAAGATGTTAAAATTCGAATT
260 TCACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATT
* * * * *
20424381 TATTCAAATTACCTCACAAATCATGTTTAATCTTGATA-AATAAGACTAAAAACCTTCTGATTTA
325 TATTCAAATTACCTCACAAATCATGTTTAAT-TT--TAGAGTTAG---AACATCCTT-TGATTTG
* * *
20424445 TGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGATGAATATGACTT
383 TGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGATGAATATGACAT
*
20424510 TGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCATCATAAAAAC-A
448 TGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAA
* * * **
20424574 ----AG------TAATTACCTTTGATTCGTTCTAATTCCTTTCATTCATAATATTAATTCAAGAA
513 GTTTAGAAATAATAATTACCTTTGATTCGTTGTAATTCCTTTCATTGAAAATATTGGTTCAAGAA
* * *
20424629 TCTTAAGAAATTTAAAAATATTTTTGTTTACTTTCGAGAATAGTTTA
578 TCTTAAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCA
* * *
20424676 TTCTAATT-TGGGTTATCCCGGTCCTCTTTAAGACTCGAAGCTTCAACAGAGGTACAGTAGATAT
1 TTCTAATTCT-GGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACAT
* * * * *
20424740 TACCACCTTTCCAAAGCTAAATTAAAAATAAATTATAATTAACAGTACTAATCGAAATTCACTCA
65 TACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCA
* *
20424805 TAAAGATAGTTTACCGGATTTGTAACAT-AATGTCAAAAACTCGATTCCTCACAAAATCGACCTG
130 CAAAGATAGTTTACCAGATTTGTAACATCAA-GTCAAAAACTCGATTCCTCACAAAATCGACCT-
* * *
20424869 C-CCAGCCCTCCTAATCACTTCCAAACATCAAAACTAAACAAATTACATATAAACTAAGTATAAA
193 CTCCATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAA
* * * *** * *
20424933 TTTCAGATTTAAATTAATTTCAAAAAAATTCAGAAAGTTAATTCATGAAGATGTTAAAATTCAAA
258 TTTCACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAA
*
20424998 TTTATTCAAATTTCCTCACAAATCATGTTTAATCTTGATAAATAAGACTAAAAACCTTCTAATAG
323 TTTATTCAAATTACCTCACAAATC-------A---TG-T---T-----T---AA---T-T--T--
* * *
20425063 ATCCATTTTGAGTTAGAATATCCTTTGATTTTTGGATTTCCTTTCAAAATTCAAGATCCACCATT
358 -T--A----GAGTTAGAACATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATT
* *
20425128 AAAGCACATTATGCTTTTGATGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCA
416 AAAGCACCTTAAGCTTTTGATGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCA
* * * *
20425193 TGTAAAAATATTTCTAGTCATCATAAAAACAAGTTTAGAAATAATAATTAGCTTTGACTCATTGT
481 TGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTGT
** * *
20425258 AATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTT
546 AATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTT
* *
20425323 TCGAGAACAGTTCG
611 TCGAGAATAGTTCA
* * *
20425337 TTCTAATTCGGGTTATCCCAGTCCTC-TCAAGGCTCGAAGCTTCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
* * *
20425401 ACCACCTATCCAAAGCTGGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCACTCAC
66 ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
* *
20425466 AAAGATAGTTTACCAGATTTGTAA-ACTCAAGTCAAAAATTAAATTCCATTCCTCACAAAATCGA
131 AAAGATAGTTTACCAGATTTGTAACA-TCAAGTC---AA--AAACTCGATTCCTCACAAAATCGA
* * * * * * *
20425530 CCTCTCCAGCACTCCTAATCACTTCCAAACATCAATAATAAACAAATTGCGTTTAAACTAAGTAT
190 CCTCTCCATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTAT
* * * *
20425595 AAATTTCACATTTAAATCAATTTCACAAAAA-TCCGAAAAGTGGGTTCATGAAGATGTTGAAATT
255 AAATTTCACATTTAAATCAATTTCACAAAAATTCAG-AAAGTCGGTTCATGAATATGTTAAAATT
*
20425659 CAAATTTATTCAAATTACCTCATAAATCATGTTTAATCTTGGTAAATAAGAGTAAATACCTTCTA
319 CGAATTTATTCAAATTACCTC----A-CA-----AATC-------AT----G---------T-T-
*
20425724 ATAGATCCATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCAC
352 -TA-AT---TTTAGAGTTAGAACATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCAC
* ** *
20425789 CATTAAAGCACCTTAGGCTTTTGAAAAATATGACATTGATAAAATAATCATGTAATTGACTGTCA
412 CATTAAAGCACCTTAAGCTTTTGATGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCA
* * *
20425854 AATCATGTAAAATTTTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTATCTTTGATTC
476 AATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTC
* * * * *
20425919 ATTTTAATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTCTTGTC
541 GTTGTAATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTC
*
20425984 TACTTTCGAGAATAGTTCG
606 TACTTTCGAGAATAGTTCA
* * *
20426003 TTCTAATTCTGGTTATCTCGATCCTCCTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
1 TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
*
20426068 ATCC-CCTTTCCAAAGCTAGATTAAAAACAAATTATAATTAACAAT
66 A-CCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAAT
20426113 ATCGACCTCT
Statistics
Matches: 12225, Mismatches: 1741, Indels: 1656
0.78 0.11 0.11
Matches are distributed among these distances:
575 2 0.00
576 4 0.00
577 4 0.00
578 2 0.00
579 4 0.00
580 78 0.01
581 5 0.00
582 8 0.00
583 10 0.00
584 5 0.00
585 4 0.00
587 1 0.00
588 7 0.00
589 1 0.00
590 2 0.00
591 7 0.00
592 5 0.00
593 8 0.00
594 7 0.00
595 6 0.00
601 7 0.00
602 882 0.07
603 435 0.04
604 11 0.00
605 1 0.00
606 6 0.00
607 4 0.00
608 5 0.00
609 8 0.00
610 11 0.00
611 53 0.00
612 28 0.00
613 3 0.00
614 9 0.00
615 12 0.00
616 40 0.00
617 3 0.00
618 22 0.00
619 166 0.01
620 123 0.01
621 28 0.00
622 51 0.00
623 1647 0.13
624 11 0.00
625 12 0.00
626 22 0.00
627 13 0.00
628 285 0.02
629 36 0.00
630 31 0.00
631 24 0.00
632 11 0.00
633 17 0.00
634 81 0.01
635 169 0.01
636 61 0.00
637 32 0.00
638 15 0.00
639 34 0.00
640 454 0.04
641 1585 0.13
642 429 0.04
643 61 0.00
644 10 0.00
645 12 0.00
646 19 0.00
647 20 0.00
648 10 0.00
649 8 0.00
650 151 0.01
651 24 0.00
652 19 0.00
653 42 0.00
654 276 0.02
655 337 0.03
656 4 0.00
657 21 0.00
658 444 0.04
659 1683 0.14
660 152 0.01
661 416 0.03
662 844 0.07
663 26 0.00
664 5 0.00
665 242 0.02
666 179 0.01
667 76 0.01
668 4 0.00
669 5 0.00
670 4 0.00
671 5 0.00
672 10 0.00
673 1 0.00
674 6 0.00
675 9 0.00
676 5 0.00
677 3 0.00
678 1 0.00
679 4 0.00
680 1 0.00
682 1 0.00
684 4 0.00
685 5 0.00
686 11 0.00
687 4 0.00
688 3 0.00
689 3 0.00
690 4 0.00
691 4 0.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (624 bp):
TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATT
ACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCACTCAC
AAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTC
CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTT
CACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAATATGTTAAAATTCGAATTT
ATTCAAATTACCTCACAAATCATGTTTAATTTTAGAGTTAGAACATCCTTTGATTTGTGGATTTC
CTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGATGAATATGACATTGATAAAA
TATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAA
ATAATAATTACCTTTGATTCGTTGTAATTCCTTTCATTGAAAATATTGGTTCAAGAATCTTAAGA
AATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCA
Done.