Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 66 of 198
Found at i:20418538 original size:641 final size:642
Alignment explanation
Indices: 20416752--20426112 Score: 8767
Period size: 662 Copynumber: 14.6 Consensus size: 642
20416742 ATCATGTTTA
* * *
20416752 ATTTTGAGTTAGAACATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
1 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* *
20416817 CACATTATA-CTTTTG-ATGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCCAATCAT
66 CACCTTA-AGCTTTTGAAT-AATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCAT
* * * * * *
20416879 GTAAAAATATTTCTAGTCATCATAAAAACAAGTTCAGAAATAACAATTTCCTTTGATTCTTTCTA
129 GTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTA
* * * * *
20416944 ATTCCTTTCATTCATAATATTGATTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTTTACTTT
194 ATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA-------TT--TTT
* *
20417009 CGAGAATAGTTCATTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGG
250 C-------G----TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGG
* *
20417074 TAAAGTAGACATTACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATC
304 TAAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTAACAATTCTAATC
*
20417139 GAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCATA
369 GAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACA
* * *
20417204 AAATCGACCTCTCCATCCCATCTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAAC
434 AAATCGACCTCTCCATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAAC
* * * *
20417269 TAGGTATAAATTTCACATTTAAATCAATTTCACAAAAA-TCCGAAATGTTGGTTC---AAGAAGT
499 TAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATTCAGAAA-GTCGGTTCATGAAGATGT
* * * *
20417330 TGAAATTCAAGTTTCTTCAAATTACTTTACAAATCATGTTTAATCTTGATAAATAGGAGCAAATA
563 TGAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAAATAAGAGCAAATA
20417395 CGTTCTAATAGATCC
628 CGTTCTAATAGATCC
* * *
20417410 ATTTAGAGTTAG-GACATCTATTGATTTGTGGATTTCCTCTCAAAATTCAATATCCACCGTTAAA
1 ATTTAGAGTTAGAG-CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAA
* * *
20417474 GCACCTTAAGCTTTAGAAGAATATGACATTGATAAAATAGTCATGTAATTGACTCTCAAATCATG
65 GCACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATG
20417539 TAAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTA
130 TAAAAATA-TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTA
* *
20417603 ATTCATTCGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTT
194 ATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTC-AAA-A--------TA-TTT
20417668 CGAGAAAAGTTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGG
248 ---------TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGG
* * * *
20417733 TAAAGTAGACATTACTACATTTCGAAAGCTAGATTAAACACAAATTAGAATTAACAATTCTAATC
304 TAAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTAACAATTCTAATC
* *
20417798 GAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCAATTCGTCACA
369 GAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACA
* * *
20417863 AAATCGACCTCTCCATCCCTCCTAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAAC
434 AAATCGACCTCTCCATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAAC
** **
20417928 TAAGTATAAATTTCGTATTTAAATCAATTTCACAAAAATTTGGAAAGTCGGTTCATGAAGATGTT
499 TAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAAGATGTT
* * *
20417993 GAAATTCAAATTTCTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAA
564 GAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAAATAAGAGCAAAT-A
*
20418058 C-TTCTAATAGATCT
628 CGTTCTAATAGATCC
* * *
20418072 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACTATTAAAA
1 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* * *
20418137 CACCTTAAGCTTTTGAATAATATGACATTGAGAAAATAATCATGTAATTGACTCTGAAACCATGT
66 CACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGT
* * *
20418202 AAAAATATTTCTAATCATCATATAAACAAGTTTAGAAATAATAATTACCTTTGGTTCGTTGTAAT
131 AAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAAT
20418267 TCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA-TTTTCGTTCTAATTC
196 TCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTCGTTCTAATTC
* * * *
20418331 TGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAATAGAGGTAAAATAGACATTACCACCTTT
261 TGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTT
* * * * *
20418396 CCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTAACTCACAAAGATACT
326 CCAAAGCTAGATTAAACACAAATTACAATTAACAATTCTAATCGAAATTCACTCACAAAGATAGT
* * * * * * * *
20418461 TTACCAGATTTGTAAGATTAAGTCGAAAAGTCGATTCCTCCCAAAATTGACTTCTCCAGCCCTTC
391 TTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTCCATCCCTTC
* * *
20418526 TAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTTCACATTTAA
456 TAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTTCACATTTAA
* * ** * * * *
20418591 TTTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCGAATTTATTCAAATT
521 ATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATT
* * * *
20418656 GCCTCACAAATCATGTTTAATTTTGAGT---T-AGA--ACAT-C---CT--T---T-G
586 ACCTCACAAATCATGTTTAATCTTGA-TAAATAAGAGCAAATACGTTCTAATAGATCC
** * * *** * *
20418698 ATTT---G-T-G-G-AT---TT--CCTCT-CA--AAAT-TCAAGA-TC--CA--C--CATTAAAG
1 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* ** * * *
20418740 CACATTATA-CTTTTGATGAATATGACATTGATAAAATATCATGTAAT-TGACT--CTC-CAATC
66 CACCTTA-AGCTTTTGAATAATATGACATTGATAAAATA--A--TCATGTAATTGACTCTCAA--
* * * * ** ** * * * *
20418800 AT-GT-AAAAATAT-TTCTAGTCATCAT-A-AAAACA-AGTTCAGAAATAACAAT--TTCCTTTG
124 ATCATGTAAAA-ATATT-T-CTAATCATCATAAAA-ACAAGT-TTAGA-AATAATAATTAC-CT-
** * * *
20418857 ATTCTTTCTAATTCCT--TTCA-TTCA-T--A-ATATTGATTCAAGAATCTTAAGAAATTTCAAA
181 -TTGATTC--ATT-GTAATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAA
*
20418915 ATATTTTTGTTTACTTTCGAGAATAGTTCATTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACT
242 ATA-------TT--TTTC-------G----TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACT
* *
20418980 CGAAGCATCAACAGAGGTAAAGTAGACATTACCACCTTTCCAAAGCTAGATCAAACACAAATTAC
287 CGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTAC
*
20419045 AATTTACAATTCTAATCGAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAA
352 AATTAACAATTCTAATCGAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAA
* *
20419110 AAACTCGATTCCTCACAAAATCGA-C-CT--ATCCCTTATAATCACTTCCAAACAACAATACTAA
417 AAACTCGATTCCTCACAAAATCGACCTCTCCATCCCTTCTAATCACTTCCAAACATCAATACTAA
* *
20419171 ACAAATTACGTATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAA-TCCGAAATG
482 ACAAATTACATATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATTCAGAAA-G
* * * * * *
20419235 TTGGTTC---AAGAAGTTGAAATTCAAGTTTCTTCAAATTACTTTACAAATCATGTGTAATCTTG
546 TCGGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTG
*
20419297 ATAAATAAGAGTAAATACCG-TCTAATAGATCC
611 ATAAATAAGAGCAAATA-CGTTCTAATAGATCC
* *
20419329 ATTTAGAGTTAG-GACATCTATTGATTTGTGGATTTCCTCTCAAAATTCAATATCCACCATTAAA
1 ATTTAGAGTTAGAG-CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAA
* * *
20419393 GCACCTTAAGCTTTTGAAGATTATGACATTGATAAAATAGTCATGTAATTGACTCTCAAATCATG
65 GCACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATG
20419458 TAAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTA
130 TAAAAATA-TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTA
* *
20419522 ATTCATTCGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATATTTGTCTACTTT
194 ATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTC--AA-A-A------TA-TTT
20419587 CGAGAAAAGTTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGG
248 ---------TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGG
* * * *
20419652 TAAAGTAGACATTACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATC
304 TAAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTAACAATTCTAATC
* *
20419717 GAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCAATTCGTCACA
369 GAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACA
* * *
20419782 AAATCGACCTCTCCATCCCTCCTAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAAC
434 AAATCGACCTCTCCATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAAC
** **
20419847 TAAGTATAAATTTCGTATTTAAATCAATTTCACAAAAATTTGGAAAGTCGGTTCATGAAGATGTT
499 TAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAAGATGTT
* * *
20419912 GAAATTCAAATTTCTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAA
564 GAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAAATAAGAGCAAAT-A
20419977 C-TTCTAATAGATCC
628 CGTTCTAATAGATCC
* * *
20419991 ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCATTAAAA
1 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* * *
20420056 CACCTTAAGCTTTTGAATAATATGACATTGAGAAAATAATCATGTAATTGACTCTGAAACCATGT
66 CACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGT
* * *
20420121 AAAAATATTTCTAATCATCATATAAACAAGTTTAGAAATAATAATTACCTTTGGTTCGTTGTAAT
131 AAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAAT
20420186 TCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA-TTTTCGTTCTAATTC
196 TCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTCGTTCTAATTC
* * * *
20420250 TGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAATAGAGGTAAAATAGACATTACCACCTTT
261 TGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTT
* * * * *
20420315 CCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCAAAATTCACTCACAAAGATACT
326 CCAAAGCTAGATTAAACACAAATTACAATTAACAATTCTAATCGAAATTCACTCACAAAGATAGT
* * * * * * * *
20420380 TTACCGGATTTGTAAGATTAAGTCAAAAAGTCGATTCCTCCCAAAATTGACTTCTCCAGCCCTTC
391 TTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTCCATCCCTTC
* * * *
20420445 TAATCACTTTCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTTCACATTTAA
456 TAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTTCACATTTAA
* * ** * * * *
20420510 TTTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCGAATTTATTCAAATT
521 ATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATT
* * * *
20420575 GCCTCACAAATCATGTTTAATTTTGAGT---T-AGA--ACAT-C---CT--T---T-G
586 ACCTCACAAATCATGTTTAATCTTGA-TAAATAAGAGCAAATACGTTCTAATAGATCC
** * * *** * *
20420617 ATTT---G-T-G-G-AT---TT--CCTCT-CA--AAAT-TCAAGA-TC--CA--C--CATTAAAG
1 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* ** * * *
20420659 CACATTATA-CTTTTGATGAATATGACATTGATAAAATATCATGTAAT-TGACT--CTC-CAATC
66 CACCTTA-AGCTTTTGAATAATATGACATTGATAAAATA--A--TCATGTAATTGACTCTCAA--
* * * * * ** * * * ** *
20420719 AT-GT-AAAAATAT-TTCTAGTCATCAT-AAAAACAAGTTCAGAAATAACAATTTCCTTTGATT-
124 ATCATGTAAAA-ATATT-T-CTAATCATCATAAA-AA---CA-AGTTTAGAA-AT--AATAATTA
* * * * * * * * **
20420779 CTTTCTAATTCCTT-TCATTCATAATATTGATTCAAGAATCTTAAGAAATTTCAA-AATATTTTT
178 CCTT-TGATTCATTGTAATTC---AT-TTGATTGAA-AATATT--G---GTTCAAGAAT-CTTAA
* * * * *
20420842 GTTTACTTTCAAGAATA--GTTCATTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGC
231 G--AAATTTCAA-AATATTTTTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGC
* * *
20420905 ATCAACAGAGGTAAAGTAGACATTACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTA
293 TTCAACAGAGGTAAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTAA
20420970 CAATTCTAATCGAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTC
358 CAATTCTAATCGAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTC
* *
20421035 GATTCCTCACAAAATCGACCTCTCCATCCCATCTAATCACTTCCAAACAACAATACTAAACAAAT
423 GATTCCTCACAAAATCGACCTCTCCATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAAT
* *
20421100 TACGTATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAA-TCTA-AAATGTTGGT
488 TACATATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATTC-AGAAA-GTCGGT
* * * *
20421163 TC---AAGAAGTTGAAATTCAAGTTTCTTCAAATTACTTTACAAATCATGTTTAATCTTGATAAA
551 TCATGAAGATGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAAA
* *
20421225 TAAGAGTAAATACCTTCTAATAGATCC
616 TAAGAGCAAATACGTTCTAATAGATCC
* *
20421252 ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAGAATTCAAGATCCACCATTAAAG
1 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* *
20421317 CACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATATAATTGACTCTCAAATCATGT
66 CACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGT
* *
20421382 AAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACGTTTGATTCGTTGTAA
131 AAAAATA-TTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAA
** * *
20421446 TTCATTCAATTGAAGATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTC
195 TTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA------T-T--TTTC
20421511 GAGAAAAGTTCATTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGT
251 -------G----TTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGT
* * * *
20421576 AAAGTAGACATTACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCG
305 AAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTAACAATTCTAATCG
20421641 AAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAA
370 AAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAA
* ** *
20421706 AATCGACCTCTCCATCCCTCCTAATTGCTTCCAAACATCAATGCTAAACAAATTACATATAAACT
435 AATCGACCTCTCCATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACT
** **
20421771 AAGTATAAATTTCGTATTTAAATCAATTTCACAAAAATTTGGAAAGTCGGTTCATGAAGATGTTG
500 AAGTATAAATTTCACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAAGATGTTG
* * *
20421836 AAATTCAAATTTCTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAAC
565 AAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAAATAAGAGCAAAT-AC
*
20421901 -ATCTAATAGATCC
629 GTTCTAATAGATCC
* * * *
20421914 ATTTAGAGTTAGAACATCCATTTATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCATTAAAA
1 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
*
20421979 CACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTAAAATCATGT
66 CACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGT
* * *
20422044 AAAAATATTTCTAATCATCATATAAACAAGTTTAGAAATAATAATTACCTTTGGTTCGTTGTAAT
131 AAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAAT
20422109 TCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA-TTTTCGTTCTAATTC
196 TCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTCGTTCTAATTC
* * * * *
20422173 TGGTTATCTCGGCCCTCTTCAAGACTCAAAGGTTCAACAGAGGTAAAATAGACATTACCACCTTT
261 TGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTT
* * * * *
20422238 CCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCATAAAGATACT
326 CCAAAGCTAGATTAAACACAAATTACAATTAACAATTCTAATCGAAATTCACTCACAAAGATAGT
* * * * * * * * * * *
20422303 TTACCGGATTTGTAAGATTAAGTCGAAAAGTCAATTCCTCCCAAAATTGACTTCTCCAGCCCATC
391 TTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTCCATCCCTTC
* * *
20422368 TAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAAATTTCACATTTAA
456 TAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTTCACATTTAA
* * * * * *
20422433 ATTAATTTCACAAAAATTCAGAAAGTCGAATT-ATGAATATGTTAAAATTCGAATTTATTCAAAT
521 ATCAATTTCACAAAAATTCAGAAAGTCG-GTTCATGAAGATGTTGAAATTCAAATTTCTTCAAAT
* * *
20422497 TACCTCACAAATCATGTTTAATTTTGAGT---T-AGA--ACAT-C---CT--TTGAT--
585 TACCTCACAAATCATGTTTAATCTTGA-TAAATAAGAGCAAATACGTTCTAATAGATCC
* * * * * ** * *
20422542 -TTGTGGA-TT---TCCTCTCA--AAATTCAGGA--TCCAC-C---ATT-AA-A-GCA-CATT--
1 ATT-TAGAGTTAGAGCATC-CATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAA
** * * *
20422588 ---A---T-A-CTTTTGATGAATATGACATTGATAAAATATCATGTAAT-TGACT--CTC-CAAT
64 AGCACCTTAAGCTTTTGAATAATATGACATTGATAAAATA--A--TCATGTAATTGACTCTCAA-
* * * * * ** * * * ** *
20422641 CAT-GT-AAAAATAT-TTCTAGTCATCAT-AAAAACAAGTTCAGAAATAACAATTTCCTTTGATT
124 -ATCATGTAAAA-ATATT-T-CTAATCATCATAAA-AA---CA-AGTTTAGAA-AT--AATAATT
* * * * * * * * *
20422702 -CTTTCTAATTCCTT-TCATTCATAATATTGATTCAAGAATTTTAAGAAATTTCAA-AATATTTT
177 ACCTT-TGATTCATTGTAATTC---AT-TTGATTGAA-AATATT--G---GTTCAAGAAT-CTTA
* * * * * * *
20422764 TGTTTACTTTCGAGAATA--GTTCATTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAG
230 AG--AAATTTC-AAAATATTTTTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAG
* *
20422827 CATCAACAGAGGTAAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTT
292 CTTCAACAGAGGTAAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTA
20422892 ACAATTCTAATCGAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACT
357 ACAATTCTAATCGAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACT
* *
20422957 CGATTCCTCACAAAATCGACCTCTCCATCCCATCTAATCACTTCCAAACAACAATACTAAACAAA
422 CGATTCCTCACAAAATCGACCTCTCCATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAA
* *
20423022 TTACGTATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAA-TCCGAAA-TGCTGG
487 TTACATATAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATTCAGAAAGT-C-GG
* * * *
20423085 TTC---AAGAAGTTGAAATTCAAGTTTCTTCAAATTACTTTACAAATCATGTTTAATCTTGATAA
550 TTCATGAAGATGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAA
* *
20423147 ATAAGAGTAAATACCTTCTAATAGATCC
615 ATAAGAGCAAATACGTTCTAATAGATCC
* *
20423175 ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAACG
1 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* *
20423240 CACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATATAATTGACTCTCAAATCATGT
66 CACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGT
*
20423305 AAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTGTAAT
131 AAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAAT
* * * *
20423370 TTATTTGATTGAAAATATTGGCTCAAGAATCATGAGAAATTTCAAAATATTTTTGTCTACTTTCG
196 TCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTC-AAA-A--------TA--TT--
* * *
20423435 AGAATAGTTCGTTCTAATTCTGGTTTTCTCGGTCCTCTTCAAGACTCGAAACTTCAACAGAGGTA
247 ----T--TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTA
* * * *
20423500 AAGTAGACATTACCACCTTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCAA
306 AAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTAACAATTCTAATCGA
* * * *
20423565 AACTCACTCATAAAGATAGTTTACCATATTTGTAACATCAAGTCAAGAACTCGATTCCTCACAAA
371 AATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAA
* * *
20423630 ATCGACCTCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTA
436 ATCGACCTCTCCATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTA
* * *
20423695 AGTATAAATTTCACATTTAAATCAATTTCACAAAAATCCGGAAAGTCAGTTCATGAAGATGTTGA
501 AGTATAAATTTCACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAAGATGTTGA
* * * *
20423760 AATTCAAATTTCTTCAAATTACCTCATAAATCATGTTTAATCTTGGTAAATAAGAGTAAATACCT
566 AATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAAATAAGAGCAAATACGT
20423825 TCTAATAGATCC
631 TCTAATAGATCC
* * * * *
20423837 ATTTAGAGTTAGAACATCTATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCCACCTTTAAAT
1 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* * * * * *
20423902 CACCTTAAGCTTTTGAAGAATATGACATTGATAAAAT-AT-TTCTAA-TCA-TCCTAAAAACAAG
66 CACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACT-CTCAAATC-A-
* * * ** ** * * * *
20423963 TTTAGAAATAATAATTAGCT-TTGGC-TCATTGTAATTAA-TTT-G-ATTGA-AAGTA---TTGG
128 TGT--AAA-AAT-ATT-TCTAAT--CATCA-TAAAAACAAGTTTAGAAATAATAATTACCTTTGA
* ** * * * **** * * * *
20424019 TTCA-AG-AA-TC--TTGA--G-AAAT-TT-G-AAAATATTTTTGTCTACTTTCGAGAACA--GT
185 TTCATTGTAATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTC-AAAATATTTT
* *
20424071 TCGTTCTAATTCTGGTTATCCCAGTCCTCTTCGAGACTCGAAGCTTCAACAGAGGTAAAGTAGAC
249 TCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGAC
* * * *
20424136 ATTACCACCTTTCGAAAGATAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCACT
314 ATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTAACAATTCTAATCGAAATTCACT
* * * *
20424201 CAGAAATATAGTTTACCAAATTTGTAACATCAAGTCAAAAACTCTATTCCTCACAAAATCGACCT
379 CACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCT
* *
20424266 C-CGCAGCCCTACTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTAT--
444 CTC-CATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
* * *
20424328 A----A-A-TT---TC-A----A-AAAAATTCAGAAAGTCGATTCATGAAGATGTTAAAATTCGA
508 ATTTCACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAAGATGTTGAAATTCAA
*
20424378 ATTTATTCAAATTACCTCACAAATCATGTTTAATCTTGATAAATAAGA-C---TA------AA-A
573 ATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAAATAAGAGCAAATACGTTCTAATA
20424432 -A-CC
638 GATCC
*
20424435 ---------T------T-C--TGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
1 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* * *
20424482 CACATTATGCTTTTG-ATGAATATGACTTTGATAAAAT-ATCATGTAATTGACTCTCAAATCATG
66 CACCTTAAGCTTTTGAAT-AATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATG
* * *
20424545 TAAAAATATTTCTAGTCATCATAAAAAC-A----AG------TAATTACCTTTGATTCGTTCTAA
130 TAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAA
* * * * ** * *
20424599 TTCCTTTCATTCATAATATTAATTCAAGAATCTTAAGAAATTTAAAAATATTTTTGTTTACTTTC
195 TTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATA---TT-TTT-CGTTC
*
20424664 GAGAATAGTTTATTCTAATTTGGGTTATCCCGGTCCTCTTTAAGACTCGAAGCTTCAACAGAGGT
255 -----TA----ATTC-----T-GGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGT
* * * * * * * *
20424729 ACAGTAGATATTACCACCTTTCCAAAGCTAAATTAAAAATAAATTATAATTAACAGTACTAATCG
305 AAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTAACAATTCTAATCG
* *
20424794 AAATTCACTCATAAAGATAGTTTACCGGATTTGTAACAT-AATGTCAAAAACTCGATTCCTCACA
370 AAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAA-GTCAAAAACTCGATTCCTCACA
* * *
20424858 AAATCGACCTGC-CCAGCCCTCCTAATCACTTCCAAACATCAAAACTAAACAAATTACATATAAA
434 AAATCGACCT-CTCCATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAA
* * * ***
20424922 CTAAGTATAAATTTCAGATTTAAATTAATTTCAAAAAAATTCAGAAAGTTAATTCATGAAGATGT
498 CTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAAGATGT
* * * *
20424987 TAAAATTCAAATTTATTCAAATTTCCTCACAAATCATGTTTAATCTTGATAAATAAGA-CTAAAA
563 TGAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAAATAAGAGC-AAAT
*
20425051 ACCTTCTAATAGATCC
627 ACGTTCTAATAGATCC
* ** * * *
20425067 ATTTTGAGTTAGAATATCCTTTGATTTTTGGATTTCCTTTCAAAATTCAAGATCCACCATTAAAG
1 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* *
20425132 CACATTATGCTTTTG-ATGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAATCATG
66 CACCTTAAGCTTTTGAAT-AATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATG
* * *
20425195 TAAAAATATTTCTAGTCATCATAAAAACAAGTTTAGAAATAATAATTAGCTTTGACTCATTGTAA
130 TAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAA
* *
20425260 TTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTC
195 TTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTC-AAA-A--------TA-TTT-
* * *
20425325 GAGAACAGTTCGTTCTAATTCGGGTTATCCCAGTCCTC-TCAAGGCTCGAAGCTTCAACAGAGGT
248 --------TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGT
* * * *
20425389 AAAGTAGACATTACCACCTATCCAAAGCTGGATTAAACACAAATTATAATTAACAATACTAATCG
305 AAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTAACAATTCTAATCG
* *
20425454 AAATTCACTCACAAAGATAGTTTACCAGATTTGTAA-ACTCAAGTCAAAAATTAAATTCCATTCC
370 AAATTCACTCACAAAGATAGTTTACCAGATTTGTAACA-TCAAGTC---AA--AAACTCGATTCC
* * * * * * *
20425518 TCACAAAATCGACCTCTCCAGCACTCCTAATCACTTCCAAACATCAATAATAAACAAATTGCGTT
429 TCACAAAATCGACCTCTCCATCCCTTCTAATCACTTCCAAACATCAATACTAAACAAATTACATA
* *
20425583 TAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAA-TCCGAAAAGTGGGTTCATGAA
494 TAAACTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATTCAG-AAAGTCGGTTCATGAA
* * * *
20425647 GATGTTGAAATTCAAATTTATTCAAATTACCTCATAAATCATGTTTAATCTTGGTAAATAAGAGT
558 GATGTTGAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGATAAATAAGAGC
*
20425712 AAATACCTTCTAATAGATCC
623 AAATACGTTCTAATAGATCC
*
20425732 ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
1 ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* * *
20425797 CACCTTAGGCTTTTGAAAAATATGACATTGATAAAATAATCATGTAATTGACTGTCAAATCATGT
66 CACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGT
* * * *
20425862 AAAATTTTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTATCTTTGATTCATTTTAAT
131 AAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAAT
20425927 TCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTCTTGTCTACTTTCG
196 TCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTC-AAA-A--------TA--TT--
* * *
20425992 AGAATAGTTCGTTCTAATTCTGGTTATCTCGATCCTCCTCAAGACTCGAAGCTTCAACAGAGGTA
247 ----T--TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTA
* *
20426057 AAGTAGACATTATCC-CCTTTCCAAAGCTAGATTAAAAACAAATTATAATTAACAAT
306 AAGTAGACATTA-CCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTAACAAT
20426113 ATCGACCTCT
Statistics
Matches: 7216, Mismatches: 932, Indels: 1101
0.78 0.10 0.12
Matches are distributed among these distances:
567 4 0.00
570 6 0.00
571 1 0.00
572 2 0.00
573 3 0.00
574 4 0.00
575 8 0.00
576 4 0.00
577 3 0.00
578 6 0.00
579 3 0.00
580 79 0.01
581 15 0.00
582 8 0.00
583 2 0.00
586 2 0.00
587 4 0.00
589 1 0.00
592 2 0.00
596 4 0.00
598 2 0.00
599 1 0.00
600 1 0.00
601 5 0.00
602 254 0.04
603 139 0.02
604 36 0.00
605 38 0.01
606 17 0.00
607 17 0.00
608 8 0.00
609 16 0.00
610 13 0.00
611 98 0.01
612 25 0.00
613 7 0.00
614 11 0.00
615 18 0.00
616 62 0.01
617 5 0.00
618 10 0.00
619 181 0.03
620 103 0.01
621 29 0.00
622 19 0.00
623 722 0.10
624 12 0.00
625 10 0.00
626 11 0.00
627 8 0.00
628 244 0.03
629 6 0.00
630 8 0.00
631 10 0.00
632 8 0.00
633 3 0.00
634 9 0.00
635 5 0.00
636 13 0.00
637 7 0.00
638 32 0.00
639 5 0.00
640 20 0.00
641 964 0.13
642 7 0.00
643 4 0.00
644 4 0.00
645 14 0.00
646 16 0.00
647 16 0.00
648 13 0.00
649 38 0.01
650 161 0.02
651 19 0.00
652 39 0.01
653 18 0.00
654 68 0.01
655 218 0.03
656 25 0.00
657 30 0.00
658 182 0.03
659 1041 0.14
660 156 0.02
661 81 0.01
662 1074 0.15
663 22 0.00
664 10 0.00
665 297 0.04
666 181 0.03
667 88 0.01
668 3 0.00
669 4 0.00
670 3 0.00
671 4 0.00
673 1 0.00
676 4 0.00
677 2 0.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (642 bp):
ATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
CACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGT
AAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAAT
TCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTCGTTCTAATTC
TGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTT
CCAAAGCTAGATTAAACACAAATTACAATTAACAATTCTAATCGAAATTCACTCACAAAGATAGT
TTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACCTCTCCATCCCTTC
TAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTTCACATTTAA
ATCAATTTCACAAAAATTCAGAAAGTCGGTTCATGAAGATGTTGAAATTCAAATTTCTTCAAATT
ACCTCACAAATCATGTTTAATCTTGATAAATAAGAGCAAATACGTTCTAATAGATCC
Found at i:20424877 original size:602 final size:622
Alignment explanation
Indices: 20410670--20426113 Score: 11706
Period size: 623 Copynumber: 24.2 Consensus size: 622
20410660 TCAAAATATT
* * * * *
20410670 TTCGTTCTAATTTTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAACGGAGGTAAAATAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * *
20410735 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTACCTATACTAATCGAAACTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* * * * * * * * * * * *
20410800 TCACAAAGTTACTTTACCGGAGTTGTAAGATTAAGTCGAAAAGTCGATTCCTCCCAAAATTGACT
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * * *
20410865 TCTCCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
* * * * * *
20410930 ATTTCAGATTTAAATTAATTTCACAAAAATTCAGAAAGTCAAATCATGAATATGTTAAAATTCGA
261 ATTTCACA--TAAA-CAATTT-AC---AA--C-GAAAGTCGATTCATGAAGATGTTAAAATTCAA
*
20410995 ATTTATTCAAATTACGTCACAAATCATGTTTAAT-TT---T--G-----AG---T--TAGAA-CA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATCTTAGATAAGACTAAAGACCTAATAGAACCA
* * * * *
20411043 -TCCTTTGATTTGTGGATTTCCTCTTAAAATTCAAGGTCCACCATTAAAGCACATTATA-CTTTT
381 TTAC-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTT
* * *
20411106 GATGAATATGACATTGATAAAATATCATGTAGTTGACTCTCCAATCATGTAAAAATATTTCTAGT
444 GAAGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGT
* * * ** * * *
20411171 CATCATAAAAACAAGTTCAGAAATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAA
509 CATCATAAAAACAA--T-AG--AT---AATTACCTTTGATTCATTGTAATTAATTTGATTGAAAA
* * * *
20411236 TATTGATTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTTTACTTTCGAGAATTG
566 TATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAG
* * *
20411293 TTCATTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * * *
20411358 CATTACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* *
20411423 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCATAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * *
20411488 TCTCCATCCCAT-CTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAAGTATA
196 TCTCCAGCAC-TCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATA
* * * * * * *
20411552 AATTGCAC--AAA-AA--T-C--CGAAATGTTGGTTC---AAGAAGTTGAAATTCAAGTTTCTTC
260 AATTTCACATAAACAATTTACAACGAAA-GTCGATTCATGAAGATGTTAAAATTCAAATTTATTC
* * * * * * *
20411606 AAATTACTTTACAAATCATGTGTAATCTTGATAAATAAGAGTAAATACCTTCTAATAGATCCATT
324 AAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAAGA-C--CTAATAGAACC---
*
20411671 TAGAGTTAGGACATCTATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
380 ---A-TT-----A-C--TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
20411736 CTTAAGCTTTTGAAGAATATGACATTGATAAAATAGTCATGTAATTGACTCTCAAATCATGTAAA
433 CTTAAGCTTTTGAAGAATATGACATTGATAAAATA-TCATGTAATTGACTCTCAAATCATGTAAA
* * * * *
20411801 AA-ATTTTCTAATCATCATAAAAATAAGTTTAGAAATAATAATTACGTTTCATTCATTGTAATTC
497 AATA-TTTCTAGTCATCATAAAAACAA---TAG-----ATAATTACCTTTGATTCATTGTAATTA
*
20411865 ATTCGATTGAAAATATTGGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGA
553 ATTTGATTGAAAATATT-GGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGA
20411930 GAA-AG
617 GAATAG
* * *
20411935 -TCATTCT-ATTCTGGGTATCCCGGTCCTC-TCATGACTCG-AGC-TC-ACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * * *
20411994 CA-TACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
*
20412058 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * *
20412123 -CTCCATCCCTCCTAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
* * * * *
20412187 ATTTTGTATATAAATCAATTTCACAAAAATTTGGAAAGTCGGTTCATGAAGATGTTGAAATTCAA
261 A-TTT-CACATAAA-CAATTT-AC---AA---CGAAAGTCGATTCATGAAGATGTTAAAATTCAA
* * * * *
20412252 ATTTCTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAATA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAA-GAC--CTAATA
** * *
20412317 GATCTATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCAT
375 GA---A---CCA-TT-----A--C-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCAT
* * * *
20412382 TAAAACACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTGAAAC
425 TAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAAT
* * * *
20412447 CATGTAAAAATATTTCTAATCATCATATAAACAAGTTTAGAGATAATAATTACCTTTGGTTCGTT
489 CATGTAAAAATATTTCTAGTCATCATAAAAACAA---T--AG---ATAATTACCTTTGATTCATT
* *
20412512 GTAATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTC-AAA-A--------TA-
546 GTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTAC
20412566 --T------T--
611 TTTCGAGAATAG
* * *
20412568 TTCGTTCTAATTCTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
*
20412633 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* * * * * * * * * * *
20412698 TCACAAAGATACTTTACCGGATTTGTAAGATTAAGCCGAAAAGTCGATTCCTCCCAAAATTGACT
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * * *
20412763 TCTCCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
* * * * *
20412828 ATTTCACATTTAAATTAATTTCACAAAAATTCAGATAGTCGAATCATGAATATGTTAAAATTCGA
261 ATTTCACA--TAAA-CAATTT-AC---AA--C-GAAAGTCGATTCATGAAGATGTTAAAATTCAA
20412893 ATTTATTCAAATTACCTCACAAATCATGTTTAAT-TT---T--G-----AG---T--TAGAA-CA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATCTTAGATAAGACTAAAGACCTAATAGAACCA
* * *
20412941 -TCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATA-CTTTT
381 TTAC-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTT
* *
20413004 GATGAATATGACATTGATAAAATATCATGTAATTGACTCTCCAATCATGTAAAAATATTTCTAGT
444 GAAGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGT
* * * ** * * *
20413069 CATCATAAAAACAAGTTCAGAAATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAA
509 CATCATAAAAACAA--T-AG--AT---AATTACCTTTGATTCATTGTAATTAATTTGATTGAAAA
* * * *
20413134 TATTGATTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTTTACTTTCGAGAATTG
566 TATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAG
* * *
20413191 TTCATTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * * *
20413256 CATTACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
*
20413321 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * *
20413386 TCTCCATCCCAT-CTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAAGTATA
196 TCTCCAGCAC-TCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATA
* * * * * * *
20413450 AATTGCAC--AAA-AA--T-C--CGAAATGTTGGTTC---AAGAAGTTGAAATTCAAGTTTCTTC
260 AATTTCACATAAACAATTTACAACGAAA-GTCGATTCATGAAGATGTTAAAATTCAAATTTATTC
** * * * * * *
20413504 AAATTAATTTACAAATCATGTGTAATCTTGATAAATAAGAGTAAATACCTTCTAATAGATCCATT
324 AAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAAGA-C--CTAATAGAACC---
*
20413569 TAGAGTTAGGACATCTATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
380 ---A-TT-----A-C--TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCAC
20413634 CTTAAGCTTTTGAAGAATATGACATTGATAAAATAGTCATGTAATTGACTCTCAAATCATGTAAA
433 CTTAAGCTTTTGAAGAATATGACATTGATAAAATA-TCATGTAATTGACTCTCAAATCATGTAAA
* * * *
20413699 AAAATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACGTTTGATTCATTGTAATTCA
497 AATATTTCTAGTCATCATAAAAACAA---TAG-----ATAATTACCTTTGATTCATTGTAATTAA
*
20413764 TTCGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGA
554 TTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGA
*
20413829 AAAG
619 ATAG
* *
20413833 TTCATTCTAATTCTGGTTATCCCGGTCCTCTTCATGACTCGAAGCTTCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * * *
20413898 CATTACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
*
20413963 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * * *
20414028 -CTCCATCCCTCCAAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
* ** * * *
20414092 ATTTTGTATTTAAATCAATTTCACAAAAATTTAGAAAGTCGGTTCATGAAGATGTTGAAATTCAA
261 A-TTT-CACATAAA-CAATTT-AC---AA---CGAAAGTCGATTCATGAAGATGTTAAAATTCAA
* * * * *
20414157 ATTTCTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAATA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAA-GAC--CTAATA
** * *
20414222 GATCTATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCAT
375 GA---A---CCA-TT-----A--C-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCAT
* *************************************
20414287 TAAAACACCTTAAGCTTTT---GAATA-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
425 TAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATC
*****************************************************************
20414348 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
490 ATGTAAAAATATTTCTAGTCATCATAAAAACAATAGATAATTACCTTTGATTCATTGTAATTAAT
*****************************************************************
20414413 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
555 TTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAA
***
20414478 NNN
620 TAG
***************************** * *
20414481 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNC-TC---A----AAGCTTCAACGGAGGTAAAATAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * *
20414538 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTACCTATACTAATCGAAACTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* * * * * * * * * * * *
20414603 TCACAAAGTTACTTTACCGGAGTTGTAAGATTAAGTCGAAAAGTCGATTCCTCCCAAAATTGACT
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * * *
20414668 TCTCCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
* * * * * *
20414733 ATTTCAGATTTAAATTAATTTCACAAAAATTCAGAAAGTCAAATCATGAATATGTTAAAATTCGA
261 ATTTCACA--TAAA-CAATTT-AC---AA--C-GAAAGTCGATTCATGAAGATGTTAAAATTCAA
*
20414798 ATTTATTCAAATTACGTCACAAATCATGTTTAAT-TT---T--G-----AG---T--TAGAA-CA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATCTTAGATAAGACTAAAGACCTAATAGAACCA
* * * * *
20414846 -TCCTTTGATTTGTGGATTTCCTCTTAAAATTCAAGGTCCACCATTAAAGCACATTATA-CTTTT
381 TTAC-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTT
* * *
20414909 GATGAATATGACATTGATAAAATATCATGTAATTGACTCTCCAATCATGTAAAAATATTTCAAGT
444 GAAGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGT
* * * ** * * *
20414974 CATCATAAAAACAAGTTCAGAAATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAA
509 CATCATAAAAACAA--T-AG--AT---AATTACCTTTGATTCATTGTAATTAATTTGATTGAAAA
* * * *
20415039 TATTGTTTCAAGAATCTTAAGAAATTTCAAAATATTTTCGTTTACTTTCGAGAATAG
566 TATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAG
* * *
20415096 TTCATTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * * *
20415161 CATTACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
*
20415226 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * * **
20415291 TCTCCATCCCAT-CTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTTGGTATA
196 TCTCCAGCAC-TCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATA
* * * *
20415355 AATTTCACATTTAAATCAATTTCACAAAAATCCGAAATGTTGGTTC---AAGAAGTTGAAATTCA
260 AATTTCACA--TAAA-CAATTT-AC---AA--CGAAA-GTCGATTCATGAAGATGTTAAAATTCA
* * * * * * * *
20415417 AGTTTCTTCAAATTACTTTACAAATCATGTGTAATCTTGATAAATAAGAGTAAATACCGTCTAAT
315 AATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAAGA-C--CTAAT
* *
20415482 AGATCCATTTAGAGTTAGGACATCTATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCA
374 AGAACC------A-TT-----A-C--TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCA
20415547 TTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAGTCATGTAATTGACTCTCAAA
424 TTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATA-TCATGTAATTGACTCTCAAA
* *
20415612 TCATGTAAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTAACTTTGATTCA
488 TCATGTAAAAATA-TTTCTAGTCATCATAAAAACAA---TAG-----ATAATTACCTTTGATTCA
* *
20415676 TTGTAATTCATTCGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCT
544 TTGTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCT
*
20415741 ACTTTCGAGAAAAG
609 ACTTTCGAGAATAG
* *
20415755 TTCATTCTAATTCTGGTTATCCCGGTCCTCTTCATGACTCGAAGCTTCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * * *
20415820 CATTACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* *
20415885 TCACAACGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * * *
20415950 -CTCCATCCCTCCAAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
* ** * * *
20416014 ATTTTGTATTTAAATCAATTTCACAAAAATTTAGAAAGTCGGTTCATGAAGATGTTGAAATTCAA
261 A-TTT-CACATAAA-CAATTT-AC---AA---CGAAAGTCGATTCATGAAGATGTTAAAATTCAA
* * * * *
20416079 ATTTCTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAATA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAA-GAC--CTAATA
** * *
20416144 GATCTATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCAT
375 GA---A---CCA-TT-----A--C-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCAT
* * * *
20416209 TAAAACACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTGAAAC
425 TAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAAT
* * * *
20416274 CATGTAAAAATATTTCTAATCATCATATAAACAAGTTTAGAGATAATAATTACCTTTGGTTCGTT
489 CATGTAAAAATATTTCTAGTCATCATAAAAACAA---T--AG---ATAATTACCTTTGATTCATT
* *
20416339 GTAATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTC-AAA-A--------TA-
546 GTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTAC
20416393 --T------T--
611 TTTCGAGAATAG
* * *
20416395 TTCGTTCTAATTCTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAACAGAGGTAAAATAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
*
20416460 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* * * * * * * * * *
20416525 TCACAAAGATACTTTACCGGATTTGTAAGATTAAGTCGAAAAGTCGATTCCTCCCAAAATTGACT
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * * *
20416590 TCTCCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
* * * * *
20416655 ATTTCACATTTAAATTAATTTCACAAAAATTCAGATAGTCGAATCATGAATATGTTAAAATTCGA
261 ATTTCACA--TAAA-CAATTT-AC---AA--C-GAAAGTCGATTCATGAAGATGTTAAAATTCAA
20416720 ATTTATTCAAATTACCTCACAAATCATGTTTAAT-TT---T--G-----AG---T--TAGAA-CA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATCTTAGATAAGACTAAAGACCTAATAGAACCA
* * *
20416768 -TCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATA-CTTTT
381 TTAC-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTT
* *
20416831 GATGAATATGACATTGATAAAATATCATGTAATTGACTCTCCAATCATGTAAAAATATTTCTAGT
444 GAAGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGT
* * * ** * * *
20416896 CATCATAAAAACAAGTTCAGAAATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAA
509 CATCATAAAAACAA--T-AG--AT---AATTACCTTTGATTCATTGTAATTAATTTGATTGAAAA
* * *
20416961 TATTGATTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTTTACTTTCGAGAATAG
566 TATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAG
* * *
20417018 TTCATTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * * *
20417083 CATTACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* *
20417148 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCATAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * * *
20417213 TCTCCATCCCAT-CTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAGGTATA
196 TCTCCAGCAC-TCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATA
* * * *
20417277 AATTTCACATTTAAATCAATTTCACAAAAATCCGAAATGTTGGTTC---AAGAAGTTGAAATTCA
260 AATTTCACA--TAAA-CAATTT-AC---AA--CGAAA-GTCGATTCATGAAGATGTTAAAATTCA
* * * * *
20417339 AGTTTCTTCAAATTACTTTACAAATCATGTTTAATCTT-GATAAATAGGAGC-AAATACGTTCTA
315 AATTTATTCAAATTACCTCACAAATCATGTTTAATCTTAGAT--A-A-GA-CTAAAGAC---CTA
* * *
20417402 ATAGATCCATTTAGAGTTAGGACATCTATTGATTTGTGGATTTCCTCTCAAAATTCAATATCCAC
372 ATAGAACC------A-TT-----A-C--TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCAC
* *
20417467 CGTTAAAGCACCTTAAGCTTTAGAAGAATATGACATTGATAAAATAGTCATGTAATTGACTCTCA
422 CATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATA-TCATGTAATTGACTCTCA
*
20417532 AATCATGTAAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATT
486 AATCATGTAAAAATA-TTTCTAGTCATCATAAAAACAA---TAG-----ATAATTACCTTTGATT
* *
20417596 CATTGTAATTCATTCGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGT
542 CATTGTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGT
*
20417661 CTACTTTCGAGAAAAG
607 CTACTTTCGAGAATAG
20417677 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * * * *
20417742 CATTACTACATTTCGAAAGCTAGATTAAACACAAATTAGAATTAACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* * *
20417807 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCAATTCGTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * *
20417872 TCTCCATCCCTCCTAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
** * * *
20417937 ATTTCGTATTTAAATCAATTTCACAAAAATTTGGAAAGTCGGTTCATGAAGATGTTGAAATTCAA
261 ATTTC--ACATAAA-CAATTT-AC---AA---CGAAAGTCGATTCATGAAGATGTTAAAATTCAA
* * * * *
20418002 ATTTCTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAATA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAA-GAC--CTAATA
** * * *
20418067 GATCTATTTAGAGTTAGAGCATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACTAT
375 GA---A---CCA-TT-----A--C-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCAT
* * * * *
20418132 TAAAACACCTTAAGCTTTTGAATAATATGACATTGAGAAAATAATCATGTAATTGACTCTGAAAC
425 TAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAAT
* * * *
20418197 CATGTAAAAATATTTCTAATCATCATATAAACAAGTTTAGAAATAATAATTACCTTTGGTTCGTT
489 CATGTAAAAATATTTCTAGTCATCATAAAAACAA---TAG-----ATAATTACCTTTGATTCATT
* *
20418262 GTAATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTC-AAA-A--------TA-
546 GTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTAC
20418316 --T------T--
611 TTTCGAGAATAG
* * * *
20418318 TTCGTTCTAATTCTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAATAGAGGTAAAATAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* *
20418383 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTAAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* * * * * * * * *
20418448 TCACAAAGATACTTTACCAGATTTGTAAGATTAAGTCGAAAAGTCGATTCCTCCCAAAATTGACT
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * * *
20418513 TCTCCAGCCCTTCTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
** * * *
20418578 ATTTCACATTTAATTTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCGA
261 ATTTCACA--TAA-ACAATTT-AC---AA--C-GAAAGTCGATTCATGAAGATGTTAAAATTCAA
*
20418643 ATTTATTCAAATTGCCTCACAAATCATGTTTAAT-TT---T--G-----AG---T--TAGAA-CA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATCTTAGATAAGACTAAAGACCTAATAGAACCA
* * *
20418691 -TCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATA-CTTTT
381 TTAC-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTT
* *
20418754 GATGAATATGACATTGATAAAATATCATGTAATTGACTCTCCAATCATGTAAAAATATTTCTAGT
444 GAAGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGT
* * * ** * * *
20418819 CATCATAAAAACAAGTTCAGAAATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAA
509 CATCATAAAAACAA--T-AG--AT---AATTACCTTTGATTCATTGTAATTAATTTGATTGAAAA
* * *
20418884 TATTGATTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTTTACTTTCGAGAATAG
566 TATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAG
* * *
20418941 TTCATTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * * *
20419006 CATTACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
*
20419071 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* ** * *
20419136 TAT-C--C-CTTATAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
* * * *
20419197 ATTTCACATTTAAATCAATTTCACAAAAATCCGAAATGTTGGTTC---AAGAAGTTGAAATTCAA
261 ATTTCACA--TAAA-CAATTT-AC---AA--CGAAA-GTCGATTCATGAAGATGTTAAAATTCAA
* * * * * * * *
20419259 GTTTCTTCAAATTACTTTACAAATCATGTGTAATCTTGATAAATAAGAGTAAATACCGTCTAATA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAAGA-C--CTAATA
* * *
20419324 GATCCATTTAGAGTTAGGACATCTATTGATTTGTGGATTTCCTCTCAAAATTCAATATCCACCAT
375 GAACC------A-TT-----A-C--TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCAT
*
20419389 TAAAGCACCTTAAGCTTTTGAAGATTATGACATTGATAAAATAGTCATGTAATTGACTCTCAAAT
425 TAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATA-TCATGTAATTGACTCTCAAAT
*
20419454 CATGTAAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCAT
489 CATGTAAAAATA-TTTCTAGTCATCATAAAAACAA---TAG-----ATAATTACCTTTGATTCAT
* * *
20419518 TGTAATTCATTCGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATATTTGTCTA
545 TGTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTA
*
20419583 CTTTCGAGAAAAG
610 CTTTCGAGAATAG
20419596 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * * *
20419661 CATTACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* * *
20419726 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCAATTCGTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * *
20419791 TCTCCATCCCTCCTAATCGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
** * * *
20419856 ATTTCGTATTTAAATCAATTTCACAAAAATTTGGAAAGTCGGTTCATGAAGATGTTGAAATTCAA
261 ATTTC--ACATAAA-CAATTT-AC---AA---CGAAAGTCGATTCATGAAGATGTTAAAATTCAA
* * * * *
20419921 ATTTCTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACTTCTAATA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAA-GAC--CTAATA
* * *
20419986 GATCCATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCAT
375 GAACC------A-TT-----A--C-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCAT
* * * * *
20420051 TAAAACACCTTAAGCTTTTGAATAATATGACATTGAGAAAATAATCATGTAATTGACTCTGAAAC
425 TAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAAT
* * * *
20420116 CATGTAAAAATATTTCTAATCATCATATAAACAAGTTTAGAAATAATAATTACCTTTGGTTCGTT
489 CATGTAAAAATATTTCTAGTCATCATAAAAACAA---TAG-----ATAATTACCTTTGATTCATT
* *
20420181 GTAATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTC-AAA-A--------TA-
546 GTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTAC
20420235 --T------T--
611 TTTCGAGAATAG
* * * *
20420237 TTCGTTCTAATTCTGGTTATCTCGGTCCTCTTCAAGACTCAAAGCTTCAATAGAGGTAAAATAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* *
20420302 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCAAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* * * * * * * * *
20420367 TCACAAAGATACTTTACCGGATTTGTAAGATTAAGTCAAAAAGTCGATTCCTCCCAAAATTGACT
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * * * *
20420432 TCTCCAGCCCTTCTAATCACTTTCAAACATCAATAATAAACCAATTACACATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
** * * *
20420497 ATTTCACATTTAATTTAATTTCACAAAAATTCAGAAAGTCGAATCATGAATATGTTAAAATTCGA
261 ATTTCACA--TAA-ACAATTT-AC---AA--C-GAAAGTCGATTCATGAAGATGTTAAAATTCAA
*
20420562 ATTTATTCAAATTGCCTCACAAATCATGTTTAAT-TT---T--G-----AG---T--TAGAA-CA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATCTTAGATAAGACTAAAGACCTAATAGAACCA
* * *
20420610 -TCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATA-CTTTT
381 TTAC-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTTTT
* *
20420673 GATGAATATGACATTGATAAAATATCATGTAATTGACTCTCCAATCATGTAAAAATATTTCTAGT
444 GAAGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGT
* * * ** * * *
20420738 CATCATAAAAACAAGTTCAGAAATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCATAA
509 CATCATAAAAACAA--T-AG--AT---AATTACCTTTGATTCATTGTAATTAATTTGATTGAAAA
* * * *
20420803 TATTGATTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTTTACTTTCAAGAATAG
566 TATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAG
* * *
20420860 TTCATTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * * *
20420925 CATTACCACCTTTCCAAAGCTAGATCAAACACAAATTACAATTTACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
*
20420990 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * *
20421055 TCTCCATCCCAT-CTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAAGTATA
196 TCTCCAGCAC-TCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATA
* * * * *
20421119 AATTTCACATTTAAATCAATTTCACAAAAATCTAAAATGTTGGTTC---AAGAAGTTGAAATTCA
260 AATTTCACA--TAAA-CAATTT-AC---AA-C-GAAA-GTCGATTCATGAAGATGTTAAAATTCA
* * * * * * *
20421181 AGTTTCTTCAAATTACTTTACAAATCATGTTTAATCTTGATAAATAAGAGTAAATACCTTCTAAT
315 AATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAAGA-C--CTAAT
* * *
20421246 AGATCCATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAGAATTCAAGATCCACCA
374 AGAACC------A-TT-----A--C-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCA
*
20421311 TTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATATAATTGACTCTCAAA
424 TTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAA
* * *
20421376 TCATGTAAAAA-ATTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACGTTTGATTCG
488 TCATGTAAAAATA-TTTCTAGTCATCATAAAAACAA---TAG-----ATAATTACCTTTGATTCA
* ** *
20421440 TTGTAATTCATTCAATTGAAGATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCT
544 TTGTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCT
*
20421505 ACTTTCGAGAAAAG
609 ACTTTCGAGAATAG
*
20421519 TTCATTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * * *
20421584 CATTACTACATTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
*
20421649 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * ** *
20421714 TCTCCATCCCTCCTAATTGCTTCCAAACATCAATGCTAAACAAATTACATATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
** * * *
20421779 ATTTCGTATTTAAATCAATTTCACAAAAATTTGGAAAGTCGGTTCATGAAGATGTTGAAATTCAA
261 ATTTC--ACATAAA-CAATTT-AC---AA---CGAAAGTCGATTCATGAAGATGTTAAAATTCAA
* * * * *
20421844 ATTTCTTCAAATTACCCCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATAACATCTAATA
316 ATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAA-GAC--CTAATA
* * *
20421909 GATCCATTTAGAGTTAGAACATCCATTTATTTGTGGATTTCCTCCCAAAATTCAAGATCCACCAT
375 GAACCA-TT--ACTT-G-------ATTTA----TGGATTTCCTCTCAAAATTCAAGATCCACCAT
* * *
20421974 TAAAACACCTTAAGCTTTTGAATAATATGACATTGATAAAATAATCATGTAATTGACTCTAAAAT
425 TAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAAT
* * * *
20422039 CATGTAAAAATATTTCTAATCATCATATAAACAAGTTTAGAAATAATAATTACCTTTGGTTCGTT
489 CATGTAAAAATATTTCTAGTCATCATAAAAACAA---TAG-----ATAATTACCTTTGATTCATT
* *
20422104 GTAATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTC-AAA-A--------TA-
546 GTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTAC
20422158 --T------T--
611 TTTCGAGAATAG
* * * * *
20422160 TTCGTTCTAATTCTGGTTATCTCGGCCCTCTTCAAGACTCAAAGGTTCAACAGAGGTAAAATAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
*
20422225 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACTATACTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* * * * * * * * * *
20422290 TCATAAAGATACTTTACCGGATTTGTAAGATTAAGTCGAAAAGTCAATTCCTCCCAAAATTGACT
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * *
20422355 TCTCCAGCCCAT-CTAATCACTTCCAAACATCAATAATAAACCAATTACACATAAACTAAGTATA
196 TCTCCAGCAC-TCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATA
* *
20422419 AATTTCACATTTAAATTAATTTCACAAAAATTCAGAAAGTCGAATT-ATGAATATGTTAAAATTC
260 AATTTCACA--TAAA-CAATTT-AC---AA--C-GAAAGTCG-ATTCATGAAGATGTTAAAATTC
*
20422483 GAATTTATTCAAATTACCTCACAAATCATGTTTAAT-TT---T--G-----AG---T--TAGAA-
314 AAATTTATTCAAATTACCTCACAAATCATGTTTAATCTTAGATAAGACTAAAGACCTAATAGAAC
* * * *
20422531 CA-TCCTTTGATTTGTGGATTTCCTCTCAAAATTCAGGATCCACCATTAAAGCACATTATA-CTT
379 CATTAC-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTA-AGCTT
* *
20422594 TTGATGAATATGACATTGATAAAATATCATGTAATTGACTCTCCAATCATGTAAAAATATTTCTA
442 TTGAAGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTA
* * * ** * * *
20422659 GTCATCATAAAAACAAGTTCAGAAATAACAATTTCCTTTGATTCTTTCTAATTCCTTTCATTCAT
507 GTCATCATAAAAACAA--T-AG--AT---AATTACCTTTGATTCATTGTAATTAATTTGATTGAA
* * * *
20422724 AATATTGATTCAAGAATTTTAAGAAATTTCAAAATATTTTTGTTTACTTTCGAGAATAG
564 AATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAG
* * *
20422783 TTCATTCTAATTTTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCATCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * *
20422848 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTTACAATTCTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
*
20422913 TCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* * * *
20422978 TCTCCATCCCAT-CTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAACTAAGTATA
196 TCTCCAGCAC-TCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATA
* * *
20423042 AATTTCACATTTAAATCAATTTCACAA--AAA-TCCGAAATGC-TGGTTCAAGAAGTTGAAATTC
260 AATTTCACA--TAAA-CAATTT-ACAACGAAAGT-CG--ATTCAT-G---AAGATGTTAAAATTC
* * * * * * *
20423103 AAGTTTCTTCAAATTACTTTACAAATCATGTTTAATCTTGATAAATAAGAGTAAATACCTTCTAA
314 AAATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAAGA-C--CTAA
* *
20423168 TAGATCCATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACC
373 TAGAACC------A-TT-----A--C-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACC
* *
20423233 ATTAACGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATATAATTGACTCTCAA
423 ATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAA
* *
20423298 ATCATGTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCG
487 ATCATGTAAAAATATTTCTAGTCATCATAAAAACAA---TAG-----ATAATTACCTTTGATTCA
* * *
20423363 TTGTAATTTATTTGATTGAAAATATTGGCTCAAGAATCATGAGAAATTTCAAAATATTTTTGTCT
544 TTGTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCT
20423428 ACTTTCGAGAATAG
609 ACTTTCGAGAATAG
* * *
20423442 TTCGTTCTAATTCTGGTTTTCTCGGTCCTCTTCAAGACTCGAAACTTCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* * *
20423507 CATTACCACCTTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCAAAACTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* *
20423572 TCATAAAGATAGTTTACCATATTTGTAACATCAAGTCAAGAACTCGATTCCTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
20423637 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
196 TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
*
20423702 ATTTCACATTTAAATCAATTTCACAAAAATCCGGAAAGTC-AGTTCATGAAGATGTTGAAATTCA
261 ATTTCACA--TAAA-CAATTT-AC---AA--C-GAAAGTCGA-TTCATGAAGATGTTAAAATTCA
* * * * *
20423766 AATTTCTTCAAATTACCTCATAAATCATGTTTAATCTTGGTAAATAAGAGTAAATACCTTCTAAT
315 AATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAAGA-C--CTAAT
* * *
20423831 AGATCCATTTAGAGTTAGAACATCTATTGATTTGTGAATTTCCTCTCAAAATTCAAGATCCACCT
374 AGAACCA-TT--ACTT-G---A--T-TT-A--TG-G-ATTTCCTCTCAAAATTCAAGATCCACCA
*
20423896 TTAAATCACCTTAAGCTTTTGAAGAATATGACATTGAT--AA-A--A--T-ATT---TCT--AAT
424 TTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAAT
* * * * **
20423948 CATCCT-AAAA-A---CAAGT--T--T--AGA-AATA-ATAATTAGCTTTGGCTCATTGTAATTA
489 CAT-GTAAAAATATTTCTAGTCATCATAAAAACAATAGATAATTACCTTTGATTCATTGTAATTA
* *
20424000 ATTTGATTGAAAGTATTGGTTCAAGAATCTTGAGAAATTTGAAAATATTTTTGTCTACTTTCGAG
553 ATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAG
*
20424065 AACAG
618 AATAG
* *
20424070 TTCGTTCTAATTCTGGTTATCCCAGTCCTCTTCGAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* *
20424135 CATTACCACCTTTCGAAAGATAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* * * *
20424200 TCAGAAATATAGTTTACCAAATTTGTAACATCAAGTCAAAAACTCTATTCCTCACAAAATCGACC
131 TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
* *
20424265 TC-CGCAGCCCTACTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATA
196 TCTC-CAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATA
*
20424329 AATTTCA-A-AAA-AA-TT-C-A-GAAAGTCGATTCATGAAGATGTTAAAATTCGAATTTATTCA
260 AATTTCACATAAACAATTTACAACGAAAGTCGATTCATGAAGATGTTAAAATTCAAATTTATTCA
20424387 AATTACCTCACAAATCATGTTTAATCTT-GATAA-A-T-AAGA-CTAA-A-AACC-TT-C-TGAT
325 AATTACCTCACAAATCATGTTTAATCTTAGATAAGACTAAAGACCTAATAGAACCATTACTTGAT
* * *
20424442 TTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGATGAATATGA
390 TTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGA
*
20424507 CTTTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCATCATAAAAA
455 CATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCATCATAAAAA
* * ** * * * ** *
20424572 C-A-AG-TAATTACCTTTGATTCGTTCTAATTCCTTTCATTCATAATATTAATTCAAGAATCTTA
520 CAATAGATAATTACCTTTGATTCATTGTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTG
* *
20424634 AGAAATTTAAAAATATTTTTGTTTACTTTCGAGAATAG
585 AGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAG
** * *
20424672 TTTATTCTAATT-TGGGTTATCCCGGTCCTCTTTAAGACTCGAAGCTTCAACAGAGGTACAGTAG
1 TTCGTTCTAATTCT-GGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAG
* * * * *
20424736 ATATTACCACCTTTCCAAAGCTAAATTAAAAATAAATTATAATTAACAGTACTAATCGAAATTCA
65 ACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCA
*
20424801 CTCATAAAGATAGTTTACCGGATTTGTAACAT-AATGTCAAAAACTCGATTCCTCACAAAATCGA
130 CTCATAAAGATAGTTTACCAGATTTGTAACATCAA-GTCAAAAACTCGATTCCTCACAAAATCGA
* *
20424865 CCTGC-CCAGCCCTCCTAATCACTTCCAAACATCAAAACTAAACAAATTACATATAAACTAAGTA
194 CCT-CTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTA
* * * **
20424929 TAAATTTCAGATTTAAATTAATTTCAAAAAAATTCAGAAAGTTAATTCATGAAGATGTTAAAATT
258 TAAATTTCACA--TAAA-CAATTT----ACAA--C-GAAAGTCGATTCATGAAGATGTTAAAATT
* * *
20424994 CAAATTTATTCAAATTTCCTCACAAATCATGTTTAATCTTGATAAATAAGACTAAAAACCTTCTA
313 CAAATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAAGA-C--CTA
* * *
20425059 ATAGATCCATTTTGAGTTAGAATATCCTTTGATTTTTGGATTTCCTTTCAAAATTCAAGATCCAC
372 ATAGAACC------A--T----TA--C-TTGATTTATGGATTTCCTCTCAAAATTCAAGATCCAC
* * *
20425124 CATTAAAGCACATTATGCTTTTGATGAATATGACATTGATAAAATATCATGTAATTGACTCTCAA
422 CATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATATCATGTAATTGACTCTCAA
* *
20425189 ATCATGTAAAAATATTTCTAGTCATCATAAAAACAAGTTTAGAAATAATAATTAGCTTTGACTCA
487 ATCATGTAAAAATATTTCTAGTCATCATAAAAACAA---TAG-----ATAATTACCTTTGATTCA
20425254 TTGTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCT
544 TTGTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCT
*
20425319 ACTTTCGAGAACAG
609 ACTTTCGAGAATAG
* * *
20425333 TTCGTTCTAATTCGGGTTATCCCAGTCCTC-TCAAGGCTCGAAGCTTCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
* *
20425397 CATTACCACCTATCCAAAGCTGGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
66 CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
* * *
20425462 TCACAAAGATAGTTTACCAGATTTGTAA-ACTCAAGTCAAAAATTAAATTCCATTCCTCACAAAA
131 TCATAAAGATAGTTTACCAGATTTGTAACA-TCAAGTC---AA--AAACTCGATTCCTCACAAAA
* * * *
20425526 TCGACCTCTCCAGCACTCCTAATCACTTCCAAACATCAATAATAAACAAATTGCGTTTAAACTAA
190 TCGACCTCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAA
* * *
20425591 GTATAAATTTCACATTTAAATCAATTTCACAAAAATCCGAAAAGTGGGTTCATGAAGATGTTGAA
255 GTATAAATTTCACA--TAAA-CAATTT-AC---AA--CG-AAAGTCGATTCATGAAGATGTTAAA
* * * *
20425656 ATTCAAATTTATTCAAATTACCTCATAAATCATGTTTAATCTTGGTAAATAAGAGTAAATACCTT
310 ATTCAAATTTATTCAAATTACCTCACAAATCATGTTTAATC-T--TAGATAAGACTAAAGA-C--
* *
20425721 CTAATAGATCCATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATC
369 CTAATAGAACC------A-TT-----A--C-TTGATTTATGGATTTCCTCTCAAAATTCAAGATC
* * *
20425786 CACCATTAAAGCACCTTAGGCTTTTGAAAAATATGACATTGATAAAATAATCATGTAATTGACTG
419 CACCATTAAAGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACTC
* * * *
20425851 TCAAATCATGTAAAATTTTTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTATCTTTGA
483 TCAAATCATGTAAAAATATTTCTAGTCATCATAAAAACAA---TAG-----ATAATTACCTTTGA
* * * *
20425916 TTCATTTTAATTCATTTGATTGAAAATATTGGTTCAAGAATCTTAAGAAATTTCAAAATATTCTT
540 TTCATTGTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTT
20425981 GTCTACTTTCGAGAATAG
605 GTCTACTTTCGAGAATAG
* * *
20425999 TTCGTTCTAATTCTGGTTATCTCGATCCTCCTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
1 TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
*
20426064 CATTATCC-CCTTTCCAAAGCTAGATTAAAAACAAATTATAATTAACAATA
66 CATTA-CCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATA
20426114 TCGACCTCTC
Statistics
Matches: 12277, Mismatches: 1750, Indels: 1544
0.79 0.11 0.10
Matches are distributed among these distances:
580 60 0.00
581 1 0.00
582 4 0.00
583 1 0.00
584 1 0.00
585 3 0.00
586 1 0.00
587 1 0.00
588 4 0.00
591 4 0.00
592 2 0.00
593 10 0.00
594 1 0.00
596 2 0.00
597 4 0.00
598 3 0.00
599 17 0.00
600 8 0.00
601 14 0.00
602 864 0.07
603 524 0.04
604 14 0.00
605 10 0.00
606 20 0.00
607 10 0.00
608 3 0.00
609 2 0.00
610 8 0.00
611 61 0.00
612 18 0.00
613 2 0.00
614 2 0.00
615 17 0.00
616 52 0.00
617 7 0.00
618 8 0.00
619 178 0.01
620 175 0.01
621 15 0.00
622 19 0.00
623 1654 0.13
624 12 0.00
625 10 0.00
626 5 0.00
627 11 0.00
628 336 0.03
629 4 0.00
630 5 0.00
631 1 0.00
632 11 0.00
633 1 0.00
634 79 0.01
635 141 0.01
636 28 0.00
637 13 0.00
638 14 0.00
639 40 0.00
640 474 0.04
641 1553 0.13
642 428 0.03
643 58 0.00
644 5 0.00
645 11 0.00
647 6 0.00
648 13 0.00
649 9 0.00
650 139 0.01
651 18 0.00
652 13 0.00
653 32 0.00
654 338 0.03
655 327 0.03
656 13 0.00
657 9 0.00
658 417 0.03
659 1629 0.13
660 152 0.01
661 544 0.04
662 1000 0.08
663 17 0.00
664 5 0.00
665 286 0.02
666 182 0.01
667 81 0.01
668 3 0.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (622 bp):
TTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGA
CATTACCACCTTTCCAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAC
TCATAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCGACC
TCTCCAGCACTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAA
ATTTCACATAAACAATTTACAACGAAAGTCGATTCATGAAGATGTTAAAATTCAAATTTATTCAA
ATTACCTCACAAATCATGTTTAATCTTAGATAAGACTAAAGACCTAATAGAACCATTACTTGATT
TATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGAAGAATATGAC
ATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCATCATAAAAAC
AATAGATAATTACCTTTGATTCATTGTAATTAATTTGATTGAAAATATTGGTTCAAGAATCTTGA
GAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAG
Found at i:20425707 original size:665 final size:659
Alignment explanation
Indices: 20424433--20426113 Score: 2460
Period size: 665 Copynumber: 2.5 Consensus size: 659
20424423 AGACTAAAAA
20424433 CCTTCTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGA
1 CCTT-TGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGA
*
20424498 TGAATATGACTTTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCA
65 TGAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCA
* * * * *
20424563 TCATAAAAAC-A----AG------TAATTACCTTTGATTCGTTCTAATTCCTTTCATTCATAATA
130 TCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCTAATTCATTTGATTGAAAATA
** * * **
20424617 TTAATTCAAGAATCTTAAGAAATTTAAAAATATTTTTGTTTACTTTCGAGAATAGTTTATTCTAA
195 TTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCGTTCTAA
* * * *
20424682 TTTGGGTTATCCCGGTCCTCTTTAAGACTCGAAGCTTCAACAGAGGTACAGTAGATATTACCACC
260 TTCGGGTTATCCC-GTCCTC-TCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACC
* * * *
20424747 TTTCCAAAGCTAAATTAAAAATAAATTATAATTAACAGTACTAATCGAAATTCACTCATAAAGAT
323 TTTCCAAAGCTAGATTAAAAACAAATTATAATTAACAATACTAATCGAAATTCACTCACAAAGAT
* * *
20424812 AGTTTACCGGATTTGTAACATAATGTCAAAAACTCGATTCCTCACAAAATCGACCTGCCCAGCCC
388 AGTTTACCAGATTTGTAACATAATGTCAAAAACTCCATTCCTCACAAAATCGACCTGCCCAGCAC
*
20424877 TCCTAATCACTTCCAAACATCAAAACTAAACAAATTACATATAAACTAAGTATAAATTTCAGATT
453 TCCTAATCACTTCCAAACATCAAAACTAAACAAATTACATATAAACTAAGTATAAATTTCACATT
* * *
20424942 TAAATTAATTTCAAAAAAATTCAGAAAGTTAATTCATGAAGATGTTAAAATTCAAATTTATTCAA
518 TAAATCAATTTCAAAAAAATCCAGAAAGTGAATTCATGAAGATGTTAAAATTCAAATTTATTCAA
* *
20425007 ATTTCCTCACAAATCATGTTTAATCTTGATAAATAAGACTAAAAACCTTCTAATAGATCCATTTT
583 ATTACCTCACAAATCATGTTTAATCTTGATAAATAAGACTAAAAACCTTCTAATAGATCCATTTA
*
20425072 GAGTTAGAATAT
648 GAGTTAGAACAT
* *
20425084 CCTTTGATTTTTGGATTTCCTTTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGAT
1 CCTTTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGAT
20425149 GAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCAT
66 GAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCAT
* * * *
20425214 CATAAAAACAAGTTTAGAAATAATAATTAGCTTTGACTCATTGTAATTAATTTGATTGAAAATAT
131 CATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCTAATTCATTTGATTGAAAATAT
* *
20425279 TGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAACAGTTCGTTCTAAT
196 TGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCGTTCTAAT
* *
20425344 TCGGGTTATCCCAGTCCTCTCAAGGCTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTA
261 TCGGGTTATCCC-GTCCTCTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTT
* *
20425409 TCCAAAGCTGGATTAAACACAAATTATAATTAACAATACTAATCGAAATTCACTCACAAAGATAG
325 TCCAAAGCTAGATTAAAAACAAATTATAATTAACAATACTAATCGAAATTCACTCACAAAGATAG
*
20425474 TTTACCAGATTTGTAA-ACTCAA-GTCAAAAATTAAATTCCATTCCTCACAAAATCGACCT-CTC
390 TTTACCAGATTTGTAACA-T-AATGTC---AA--AAACTCCATTCCTCACAAAATCGACCTGC-C
* * *
20425536 CAGCACTCCTAATCACTTCCAAACATCAATAA-TAAACAAATTGCGTTTAAACTAAGTATAAATT
447 CAGCACTCCTAATCACTTCCAAACATCAA-AACTAAACAAATTACATATAAACTAAGTATAAATT
* ** *
20425600 TCACATTTAAATCAATTTCACAAAAATCC-GAAAAGTGGGTTCATGAAGATGTTGAAATTCAAAT
511 TCACATTTAAATCAATTTCAAAAAAATCCAG-AAAGTGAATTCATGAAGATGTTAAAATTCAAAT
* * * *
20425664 TTATTCAAATTACCTCATAAATCATGTTTAATCTTGGTAAATAAGAGTAAATACCTTCTAATAGA
575 TTATTCAAATTACCTCACAAATCATGTTTAATCTTGATAAATAAGACTAAAAACCTTCTAATAGA
20425729 TCCATTTAGAGTTAGAACAT
640 TCCATTTAGAGTTAGAACAT
* * * * *
20425749 CCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAGGCTTTTGAA
1 CCTTTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGAT
* * * * *
20425814 AAATATGACATTGATAAAATAATCATGTAATTGACTGTCAAATCATGTAAAATTTTTTCTAATCA
66 GAATATGACATTGATAAAAT-ATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCA
* *
20425879 TCATAAAAACAAGTTTAGAAATAATAATTATCTTTGATTCATTTTAATTCATTTGATTGAAAATA
130 TCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCTAATTCATTTGATTGAAAATA
*
20425944 TTGGTTCAAGAATCTTAAGAAATTTCAAAATATTCTTGTCTACTTTCGAGAATAGTTCGTTCTAA
195 TTGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCGTTCTAA
* *
20426009 TTCTGGTTATCTCGATCCTCCTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTATCC-C
260 TTCGGGTTATCCCG-TCCT-CTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTA-CCAC
20426073 CTTTCCAAAGCTAGATTAAAAACAAATTATAATTAACAATA
322 CTTTCCAAAGCTAGATTAAAAACAAATTATAATTAACAATA
20426114 TCGACCTCTC
Statistics
Matches: 926, Mismatches: 79, Indels: 34
0.89 0.08 0.03
Matches are distributed among these distances:
650 132 0.14
651 5 0.01
655 2 0.00
659 1 0.00
660 119 0.13
661 109 0.12
663 2 0.00
664 2 0.00
665 294 0.32
666 180 0.19
667 78 0.08
668 2 0.00
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (659 bp):
CCTTTGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGAT
GAATATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCAT
CATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTCTAATTCATTTGATTGAAAATAT
TGGTTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCGTTCTAAT
TCGGGTTATCCCGTCCTCTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTT
CCAAAGCTAGATTAAAAACAAATTATAATTAACAATACTAATCGAAATTCACTCACAAAGATAGT
TTACCAGATTTGTAACATAATGTCAAAAACTCCATTCCTCACAAAATCGACCTGCCCAGCACTCC
TAATCACTTCCAAACATCAAAACTAAACAAATTACATATAAACTAAGTATAAATTTCACATTTAA
ATCAATTTCAAAAAAATCCAGAAAGTGAATTCATGAAGATGTTAAAATTCAAATTTATTCAAATT
ACCTCACAAATCATGTTTAATCTTGATAAATAAGACTAAAAACCTTCTAATAGATCCATTTAGAG
TTAGAACAT
Found at i:20426467 original size:26 final size:26
Alignment explanation
Indices: 20426438--20426490 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20426428 GTTTTTAGCT
20426438 AAGAACATGAGTTGATATTT-TGAAAA
1 AAGAACATGAGTTGAT-TTTCTGAAAA
20426464 AAGAACATGAGTTGATTTTCTGAAAA
1 AAGAACATGAGTTGATTTTCTGAAAA
20426490 A
1 A
20426491 TTATGAAACG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.30
Consensus pattern (26 bp):
AAGAACATGAGTTGATTTTCTGAAAA
Found at i:20431032 original size:33 final size:31
Alignment explanation
Indices: 20430986--20431098 Score: 128
Period size: 33 Copynumber: 3.6 Consensus size: 31
20430976 CAGATGCGGT
*
20430986 GGAATCAGTACTTAGCAACCACCAATGAATAGG
1 GGAATCAGCACTTAGCAACCACCAATG-AT-GG
*
20431019 GGAATTAGCACTTAGCAACC-CC--TCG--GG
1 GGAATCAGCACTTAGCAACCACCAAT-GATGG
20431046 GGAATCAGCACTTAGCAACCACCAATGAGTTGG
1 GGAATCAGCACTTAGCAACCACCAATGA--TGG
20431079 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
20431099 CCTTCATATT
Statistics
Matches: 69, Mismatches: 3, Indels: 16
0.78 0.03 0.18
Matches are distributed among these distances:
27 21 0.30
28 2 0.03
29 1 0.01
30 2 0.03
31 1 0.01
32 2 0.03
33 40 0.58
ACGTcount: A:0.34, C:0.26, G:0.23, T:0.18
Consensus pattern (31 bp):
GGAATCAGCACTTAGCAACCACCAATGATGG
Found at i:20431081 original size:60 final size:60
Alignment explanation
Indices: 20430986--20431101 Score: 196
Period size: 60 Copynumber: 1.9 Consensus size: 60
20430976 CAGATGCGGT
* *
20430986 GGAATCAGTACTTAGCAACCACCAATGAATAGGGGAATTAGCACTTAGCAACCCCTCGGG
1 GGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGG
* *
20431046 GGAATCAGCACTTAGCAACCACCAATGAGTTGGGGAATCAGCACTTAGCAACCCCT
1 GGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCT
20431102 TCATATTCAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.33, C:0.27, G:0.22, T:0.18
Consensus pattern (60 bp):
GGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGG
Found at i:20433081 original size:23 final size:23
Alignment explanation
Indices: 20433051--20433096 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
20433041 ACCCAAATAG
20433051 CATCTTTCTTCTTTGGAGTTAAA
1 CATCTTTCTTCTTTGGAGTTAAA
20433074 CATCTTTCTTCTTTGGAGTTAAA
1 CATCTTTCTTCTTTGGAGTTAAA
20433097 GGCAATCCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (23 bp):
CATCTTTCTTCTTTGGAGTTAAA
Found at i:20438232 original size:102 final size:102
Alignment explanation
Indices: 20438056--20438240 Score: 271
Period size: 102 Copynumber: 1.8 Consensus size: 102
20438046 ACCGTTATCA
* * * * *
20438056 GTGGATTCCGCACTTAGCAACCACCAATGAATCGAGGAATCAGCACACAGCAACCCCTTGGGGGA
1 GTGGAATCAGCACTTAGCAACAACCAATGAATAGAGGAATCAGCACACAGCAACCCCTCGGGGGA
*
20438121 AGCAGCACTTAGCAACCCCCTTCACATTTCAGATGCG
66 AGCAGCACTTACCAACCCCCTTCACATTTCAGATGCG
* * **
20438158 GTGGAATCAGCACTTAGCAACAACCAATGAATAGGGGAATTAGCACTTAGCAACCCCTCGGGGGA
1 GTGGAATCAGCACTTAGCAACAACCAATGAATAGAGGAATCAGCACACAGCAACCCCTCGGGGGA
*
20438223 ATCAGCACTTACCAACCC
66 AGCAGCACTTACCAACCC
20438241 ATTCATATTC
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
102 72 1.00
ACGTcount: A:0.31, C:0.30, G:0.22, T:0.17
Consensus pattern (102 bp):
GTGGAATCAGCACTTAGCAACAACCAATGAATAGAGGAATCAGCACACAGCAACCCCTCGGGGGA
AGCAGCACTTACCAACCCCCTTCACATTTCAGATGCG
Found at i:20441935 original size:16 final size:16
Alignment explanation
Indices: 20441887--20441945 Score: 77
Period size: 15 Copynumber: 3.8 Consensus size: 16
20441877 GTTCTTTAGA
*
20441887 TGTGAAACTATAGACT
1 TGTGAAACTATAGAAT
20441903 T-TGAAACTATAGAAT
1 TGTGAAACTATAGAAT
*
20441918 TGTGAAAACTATA-TAT
1 TGTG-AAACTATAGAAT
20441934 TGTGAAACTATA
1 TGTGAAACTATA
20441946 AGAAACTGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
15 22 0.56
16 9 0.23
17 8 0.21
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.34
Consensus pattern (16 bp):
TGTGAAACTATAGAAT
Found at i:20446851 original size:9 final size:9
Alignment explanation
Indices: 20446833--20446875 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
20446823 GTTCACCTAA
*
20446833 TATTTCTAT
1 TATTTTTAT
20446842 TATTTTTAT
1 TATTTTTAT
* *
20446851 TTTTATTTAA
1 TATT-TTTAT
20446861 TATTTTTAT
1 TATTTTTAT
20446870 TATTTT
1 TATTTT
20446876 GGTCTTATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
9 21 0.75
10 7 0.25
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (9 bp):
TATTTTTAT
Found at i:20468361 original size:14 final size:15
Alignment explanation
Indices: 20468342--20468375 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
20468332 ATTTAGTTGG
*
20468342 AAAATTAA-TTAATT
1 AAAATTAATTTAATA
20468356 AAAATTAATTTAATA
1 AAAATTAATTTAATA
20468371 AAAAT
1 AAAAT
20468376 ATTTATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
AAAATTAATTTAATA
Found at i:20470829 original size:13 final size:13
Alignment explanation
Indices: 20470811--20470836 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20470801 GTTATACTAA
20470811 GATAGTGAATCAT
1 GATAGTGAATCAT
20470824 GATAGTGAATCAT
1 GATAGTGAATCAT
20470837 CTCTCTAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
GATAGTGAATCAT
Found at i:20473323 original size:48 final size:48
Alignment explanation
Indices: 20473227--20473324 Score: 126
Period size: 48 Copynumber: 2.0 Consensus size: 48
20473217 TGGATGTGTA
* * * * *
20473227 TTTGTTGGGGGTAAAGGAGAGGACTAAATAGTAGGAGAAGCTAGAGTG
1 TTTGTTGGGGCTAAAGGAAAGGACTAAATAGTAGCAAAAGCTACAGTG
*
20473275 TTTGTTGGGGCTAAAGGAAATGACTAAATAGTA-CAAAATGCTACAGTG
1 TTTGTTGGGGCTAAAGGAAAGGACTAAATAGTAGCAAAA-GCTACAGTG
20473323 TT
1 TT
20473325 AGTGGGTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
47 3 0.07
48 40 0.93
ACGTcount: A:0.35, C:0.07, G:0.32, T:0.27
Consensus pattern (48 bp):
TTTGTTGGGGCTAAAGGAAAGGACTAAATAGTAGCAAAAGCTACAGTG
Found at i:20476515 original size:9 final size:9
Alignment explanation
Indices: 20476501--20476534 Score: 50
Period size: 10 Copynumber: 3.6 Consensus size: 9
20476491 CACCCCCCTT
20476501 TTTTTTTTC
1 TTTTTTTTC
20476510 TTTTTTTTTC
1 -TTTTTTTTC
20476520 TTTTTTTTC
1 TTTTTTTTC
20476529 TGTTTT
1 T-TTTT
20476535 ACATATACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 10 0.43
10 13 0.57
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:20476515 original size:10 final size:10
Alignment explanation
Indices: 20476500--20476527 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
20476490 TCACCCCCCT
20476500 TTTTTTTTTC
1 TTTTTTTTTC
20476510 TTTTTTTTTC
1 TTTTTTTTTC
20476520 TTTTTTTT
1 TTTTTTTT
20476528 CTGTTTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:20476534 original size:10 final size:9
Alignment explanation
Indices: 20476501--20476534 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
20476491 CACCCCCCTT
20476501 TTTTTTTTC
1 TTTTTTTTC
20476510 TTTTTTTTTC
1 -TTTTTTTTC
20476520 TTTTTTTTC
1 TTTTTTTTC
*
20476529 TGTTTT
1 TTTTTT
20476535 ACATATACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:20479821 original size:21 final size:22
Alignment explanation
Indices: 20479778--20479821 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
20479768 TTTAAAAATA
*
20479778 ATTAGATTTTAAATTTGTAGTT
1 ATTAGATTTTAAAATTGTAGTT
20479800 ATTA-ATTTTAAAAATTGT-GTT
1 ATTAGATTTT-AAAATTGTAGTT
20479821 A
1 A
20479822 ATTTTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.52
Consensus pattern (22 bp):
ATTAGATTTTAAAATTGTAGTT
Found at i:20479838 original size:17 final size:18
Alignment explanation
Indices: 20479801--20479838 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
20479791 TTTGTAGTTA
* *
20479801 TTAATTTTAAAAATTGTG
1 TTAATTTTAAAAATAGAG
20479819 TTAATTTT-AAAATAGAG
1 TTAATTTTAAAAATAGAG
20479836 TTA
1 TTA
20479839 TTATTTGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (18 bp):
TTAATTTTAAAAATAGAG
Found at i:20481784 original size:13 final size:13
Alignment explanation
Indices: 20481766--20481790 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20481756 TTGATGTGTA
20481766 AGGAACCAAGTTG
1 AGGAACCAAGTTG
20481779 AGGAACCAAGTT
1 AGGAACCAAGTT
20481791 CGTAACACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.28, T:0.16
Consensus pattern (13 bp):
AGGAACCAAGTTG
Found at i:20483706 original size:25 final size:25
Alignment explanation
Indices: 20483653--20483711 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
20483643 CAATTTATGA
* **
20483653 GAGCATACCGATTTACAGCTCATGG
1 GAGCATACCAATTTACAGCTCAAAG
*
20483678 GAGCATACCAATTTACAGCTCAAAT
1 GAGCATACCAATTTACAGCTCAAAG
20483703 GAGCATACC
1 GAGCATACC
20483712 GATTAATTGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (25 bp):
GAGCATACCAATTTACAGCTCAAAG
Found at i:20498814 original size:33 final size:34
Alignment explanation
Indices: 20498772--20498997 Score: 125
Period size: 33 Copynumber: 6.5 Consensus size: 34
20498762 ATACGGTGGG
*
20498772 ATCAGCACTTAGCAACCACCAAT-GATTCGAGGA
1 ATCAGCACTTAGCAACCACCAATAGATTCGGGGA
* *
20498805 ATCAGCACTTAGTAACC-CC--TCG--T-GGGG-
1 ATCAGCACTTAGCAACCACCAATAGATTCGGGGA
**
20498832 ATCAGCACTTAGCAACCACCTTCACATTTAAGATAAGTGGG-
1 ATCAGCACTTAGCAACCA-C--CA-A--T-AGATTCG-GGGA
20498873 ATCAGCACTTAGCAACCACCAAT-GAGTT-GGGGA
1 ATCAGCACTTAGCAACCACCAATAGA-TTCGGGGA
* * *
20498906 ATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGA
1 ATCAGCACTTAGCAACCAC---CA-A--T-AGATTC-GGGGA
*
20498948 ATCAGCACTTAGCAACCACCAAT-GAATCGGGGA
1 ATCAGCACTTAGCAACCACCAATAGATTCGGGGA
*
20498981 ATCAGCACTTACCAACC
1 ATCAGCACTTAGCAACC
20498998 TCTTGGGGGA
Statistics
Matches: 152, Mismatches: 14, Indels: 54
0.69 0.06 0.25
Matches are distributed among these distances:
27 16 0.11
28 3 0.02
29 2 0.01
30 1 0.01
31 2 0.01
32 5 0.03
33 57 0.38
34 4 0.03
35 1 0.01
36 4 0.03
37 3 0.02
38 3 0.02
39 3 0.02
40 3 0.02
41 23 0.15
42 22 0.14
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (34 bp):
ATCAGCACTTAGCAACCACCAATAGATTCGGGGA
Found at i:20498884 original size:41 final size:41
Alignment explanation
Indices: 20498829--20498967 Score: 154
Period size: 41 Copynumber: 3.6 Consensus size: 41
20498819 ACCCCTCGTG
20498829 GGGATCAGCACTTAGCAACCACCTTCACATTTAAGATAAGT
1 GGGATCAGCACTTAGCAACCACCTTCACATTTAAGATAAGT
* *
20498870 GGGATCAGCACTTAGCAACCA-C--CA-A--TGAG-T-TG-
1 GGGATCAGCACTTAGCAACCACCTTCACATTTAAGATAAGT
20498902 GGGAATCAGCACTTAGCAACC-CCTTTCACATTTAAGATACAGT
1 GGG-ATCAGCACTTAGCAACCACC-TTCACATTTAAGATA-AGT
*
20498945 GGAATCAGCACTTAGCAACCACC
1 GGGATCAGCACTTAGCAACCACC
20498968 AATGAATCGG
Statistics
Matches: 80, Mismatches: 5, Indels: 24
0.73 0.05 0.22
Matches are distributed among these distances:
32 3 0.04
33 19 0.24
34 1 0.01
35 3 0.04
36 2 0.03
37 2 0.03
38 2 0.03
39 3 0.04
40 2 0.03
41 21 0.26
42 18 0.22
43 4 0.05
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.22
Consensus pattern (41 bp):
GGGATCAGCACTTAGCAACCACCTTCACATTTAAGATAAGT
Found at i:20498897 original size:101 final size:102
Alignment explanation
Indices: 20498738--20498925 Score: 310
Period size: 101 Copynumber: 1.9 Consensus size: 102
20498728 GAATCAGCGT
*
20498738 TTAGCAACCCCTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAATGA-TTCGA
1 TTAGCAACCCCTTTCACATTTAAGATACAGTGGGATCAGCACTTAGCAACCACCAATGAGTT-GA
*
20498802 GGAATCAGCACTTAGTAACCCCTCGTGGGGATCAGCAC
65 GGAATCAGCACTTAGCAACCCCTCGTGGGGATCAGCAC
*
20498840 TTAGCAACCACC-TTCACATTTAAGATA-AGTGGGATCAGCACTTAGCAACCACCAATGAGTTGG
1 TTAGCAACC-CCTTTCACATTTAAGATACAGTGGGATCAGCACTTAGCAACCACCAATGAGTTGA
20498903 GGAATCAGCACTTAGCAACCCCT
65 GGAATCAGCACTTAGCAACCCCT
20498926 TTCACATTTA
Statistics
Matches: 81, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
101 53 0.65
102 26 0.32
103 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (102 bp):
TTAGCAACCCCTTTCACATTTAAGATACAGTGGGATCAGCACTTAGCAACCACCAATGAGTTGAG
GAATCAGCACTTAGCAACCCCTCGTGGGGATCAGCAC
Found at i:20498920 original size:74 final size:75
Alignment explanation
Indices: 20498827--20498997 Score: 276
Period size: 75 Copynumber: 2.3 Consensus size: 75
20498817 TAACCCCTCG
*
20498827 TGGGG-ATCAGCACTTAGCAACCACC-TTCACATTTAAGATA-AGTGGGATCAGCACTTAGCAAC
1 TGGGGAATCAGCACTTAGCAACC-CCTTTCACATTTAAGATACAGTGGAATCAGCACTTAGCAAC
*
20498889 CACCAATGAGT
65 CACCAATGAAT
20498900 TGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGAATCAGCACTTAGCAACC
1 TGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGAATCAGCACTTAGCAACC
20498965 ACCAATGAAT
66 ACCAATGAAT
* *
20498975 CGGGGAATCAGCACTTACCAACC
1 TGGGGAATCAGCACTTAGCAACC
20498998 TCTTGGGGGA
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
73 7 0.08
74 32 0.35
75 52 0.57
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21
Consensus pattern (75 bp):
TGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGAATCAGCACTTAGCAACC
ACCAATGAAT
Found at i:20499014 original size:176 final size:176
Alignment explanation
Indices: 20498698--20499029 Score: 540
Period size: 176 Copynumber: 1.9 Consensus size: 176
20498688 ATCGGTGGAT
**
20498698 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCGTTTAGCAACCCCTTTCACATTTAAGA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGA
* * * **
20498763 TACGGTGGGATCAGCACTTAGCAACCACCAATGATTCGAGGAATCAGCACTTAGTAACCCCTCGT
66 TACAGTGGAATCAGCACTTAGCAACCACCAATGAATCGAGGAATCAGCACTTACCAACCCCTCGT
20498828 GGGGATCAGCACTTAGCAACCACCTTCACATTTAAGATAAGTGGGA
131 GGGGATCAGCACTTAGCAACCACCTTCACATTTAAGATAAGTGGGA
*
20498874 TCAGCACTTAGCAACCACCAATGAGTTGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGA
* * *
20498939 TACAGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTACCAACCTCTTG-
66 TACAGTGGAATCAGCACTTAGCAACCACCAATGAATCGAGGAATCAGCACTTACCAACCCCTCGT
*
20499003 GGGGAATCAGCACTTAGCAACCCCCTT
131 GGGG-ATCAGCACTTAGCAACCACCTT
20499030 TATATTCAAT
Statistics
Matches: 143, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
175 4 0.03
176 139 0.97
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (176 bp):
TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGA
TACAGTGGAATCAGCACTTAGCAACCACCAATGAATCGAGGAATCAGCACTTACCAACCCCTCGT
GGGGATCAGCACTTAGCAACCACCTTCACATTTAAGATAAGTGGGA
Found at i:20503535 original size:18 final size:18
Alignment explanation
Indices: 20503512--20503557 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 18
20503502 TTCAACAGGA
20503512 AAATTCTTACTAGATACT
1 AAATTCTTACTAGATACT
20503530 AAATTCATACTTACTAGATACT
1 AAA-T--T-CTTACTAGATACT
20503552 AAATTC
1 AAATTC
20503558 ATACATACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
18 4 0.17
19 2 0.08
21 2 0.08
22 16 0.67
ACGTcount: A:0.41, C:0.17, G:0.04, T:0.37
Consensus pattern (18 bp):
AAATTCTTACTAGATACT
Found at i:20503545 original size:22 final size:22
Alignment explanation
Indices: 20503517--20503561 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
20503507 CAGGAAAATT
20503517 CTTACTAGATACTAAATTCATA
1 CTTACTAGATACTAAATTCATA
20503539 CTTACTAGATACTAAATTCATA
1 CTTACTAGATACTAAATTCATA
20503561 C
1 C
20503562 ATACATATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.20, G:0.04, T:0.36
Consensus pattern (22 bp):
CTTACTAGATACTAAATTCATA
Found at i:20506203 original size:102 final size:102
Alignment explanation
Indices: 20506081--20506281 Score: 339
Period size: 102 Copynumber: 2.0 Consensus size: 102
20506071 CCAATAAGTC
* * * *
20506081 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGATTAACACTTAGCAACGA
1 GGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGTGGAATCAACACTTAGCAACCA
* *
20506146 CCAATGATTTGGGGAATCAGCACTTAGCAACCCCTCG
66 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTCG
*
20506183 GGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGTGGAATCAACACTTAGCAACCA
20506248 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
66 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
20506282 ATTCACATTT
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 92 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.20
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGTGGAATCAACACTTAGCAACCA
CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTCG
Found at i:20506244 original size:42 final size:42
Alignment explanation
Indices: 20506185--20506321 Score: 193
Period size: 42 Copynumber: 3.5 Consensus size: 42
20506175 ACCCCTCGGG
20506185 GGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGT
1 GGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGT
* *
20506227 GGAATCAGCACTTAGCAA--CCA--C-CA-ATGAG-T-CGG-
1 GGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGT
20506260 GGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGT
1 GGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGT
20506302 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
20506322 ACCAATGAAT
Statistics
Matches: 82, Mismatches: 4, Indels: 18
0.79 0.04 0.17
Matches are distributed among these distances:
33 18 0.22
34 3 0.04
35 4 0.05
36 3 0.04
37 3 0.04
38 3 0.04
39 3 0.04
40 4 0.05
41 3 0.04
42 38 0.46
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGT
Found at i:20506277 original size:75 final size:75
Alignment explanation
Indices: 20506183--20506356 Score: 321
Period size: 75 Copynumber: 2.3 Consensus size: 75
20506173 CAACCCCTCG
20506183 GGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
*
20506248 CCAATGAGTC
66 CCAATGAATC
20506258 GGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
20506323 CCAATGAATC
66 CCAATGAATC
* *
20506333 GGGGAATCGGCACGTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
20506357 TTGGGGGAAT
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 96 1.00
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.18
Consensus pattern (75 bp):
GGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
CCAATGAATC
Found at i:20506353 original size:177 final size:177
Alignment explanation
Indices: 20506054--20506383 Score: 561
Period size: 177 Copynumber: 1.9 Consensus size: 177
20506044 ATCAGTAGAT
*
20506054 TCAGCACTTAGCAACCACCAATAAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGA
1 TCAGCACTTAGCAACCACCAATAAGTCGGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGA
* * * * * *
20506119 TACGGTGGGATTAACACTTAGCAACGACCAATGATTTGGGGAATCAGCACTTAGCAACCCCTCGG
66 TACGGTGGAATCAACACTTAGCAACCACCAATGAATCGGGGAATCAGCACGTAGCAACCCCTCGG
20506184 GGGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGTGGAA
131 GGGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGTGGAA
*
20506231 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGA
1 TCAGCACTTAGCAACCACCAATAAGTCGGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGA
* * *
20506296 TACGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCGGCACGTAGCAACCCCTTGG
66 TACGGTGGAATCAACACTTAGCAACCACCAATGAATCGGGGAATCAGCACGTAGCAACCCCTCGG
20506361 GGGAATCAGCACTTAGCAACCCC
131 GGGAATCAGCACTTAGCAACCCC
20506384 CTTTATATTC
Statistics
Matches: 142, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
177 142 1.00
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.20
Consensus pattern (177 bp):
TCAGCACTTAGCAACCACCAATAAGTCGGGGAATCAGCACTTAGCAACCCCATTCACATTTAAGA
TACGGTGGAATCAACACTTAGCAACCACCAATGAATCGGGGAATCAGCACGTAGCAACCCCTCGG
GGGAATCAGCACTTAGCAACCCCATTCACATTTAAGATACGGTGGAA
Found at i:20509100 original size:13 final size:13
Alignment explanation
Indices: 20509078--20509107 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
20509068 TTGGACACAT
20509078 GAAA-GGTAAGGG
1 GAAATGGTAAGGG
20509090 GAAATGGTAAGGG
1 GAAATGGTAAGGG
20509103 GAAAT
1 GAAAT
20509108 TTTTGTATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.13
Consensus pattern (13 bp):
GAAATGGTAAGGG
Found at i:20539143 original size:16 final size:16
Alignment explanation
Indices: 20539122--20539156 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
20539112 TGTTAGTAAT
20539122 ATTGTATAAAAAATTC
1 ATTGTATAAAAAATTC
*
20539138 ATTGTATAAAAATTTC
1 ATTGTATAAAAAATTC
20539154 ATT
1 ATT
20539157 AAGAAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (16 bp):
ATTGTATAAAAAATTC
Found at i:20540395 original size:26 final size:27
Alignment explanation
Indices: 20540334--20540405 Score: 101
Period size: 26 Copynumber: 2.7 Consensus size: 27
20540324 CATTCCGACC
*
20540334 CACAGCTCGTGTGAGCAGACCCATTTT
1 CACAGCTCGTGTGAGCATACCCATTTT
* * *
20540361 CACAACTCGTGTAAGCATACTC-TTTT
1 CACAGCTCGTGTGAGCATACCCATTTT
20540387 CACAGCTCGTGTGAGCATA
1 CACAGCTCGTGTGAGCATA
20540406 TATGTAACGG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 21 0.54
27 18 0.46
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (27 bp):
CACAGCTCGTGTGAGCATACCCATTTT
Found at i:20545036 original size:35 final size:35
Alignment explanation
Indices: 20544997--20545067 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
20544987 AAAAATAGTA
20544997 AAACCACAAGGATTTGATGCTAAATAACAGCAAAT
1 AAACCACAAGGATTTGATGCTAAATAACAGCAAAT
* *
20545032 AAACCACAAGGATTTGATGTTAGATAACAGCAAAT
1 AAACCACAAGGATTTGATGCTAAATAACAGCAAAT
20545067 A
1 A
20545068 TAGGTTGTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.21
Consensus pattern (35 bp):
AAACCACAAGGATTTGATGCTAAATAACAGCAAAT
Found at i:20546262 original size:2 final size:2
Alignment explanation
Indices: 20546255--20546284 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
20546245 GATTATAAGG
*
20546255 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20546285 GCAAGGCTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20550818 original size:51 final size:51
Alignment explanation
Indices: 20550703--20550882 Score: 177
Period size: 51 Copynumber: 3.5 Consensus size: 51
20550693 GATGGTCATG
* * * * * * *
20550703 TGTGTAGTACTATGTGGAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAAT-GATCACA
* * * *
20550753 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCTGTTAGT-TTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAAT-GATCACA
* * * * *
20550804 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATGATCACA
20550855 TGTGTAGTACTATGTGCAGGCTACTATG
1 TGTGTAGTACTATGTGCAGGCTACTATG
20550883 TGAACCGAAC
Statistics
Matches: 107, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
50 32 0.30
51 73 0.68
52 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATGATCACA
Found at i:20550884 original size:26 final size:26
Alignment explanation
Indices: 20550804--20550884 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
20550794 TTCGATCACG
20550804 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* * *
20550830 CGTGTA-T-CGGATG-GTAATGG-TCAC-A
1 TGTGTAGTAC-TATGTG-CA-GGCT-ACTA
20550855 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
20550881 TGTG
1 TGTG
20550885 AACCGAACAT
Statistics
Matches: 40, Mismatches: 6, Indels: 18
0.62 0.09 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.40
26 20 0.50
27 2 0.05
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:20550955 original size:45 final size:45
Alignment explanation
Indices: 20550886--20550980 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
20550876 TACTATGTGA
* *
20550886 ACCGAACATCATTGATTATTAAGGTGGTTGCTATGTGCTAATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
* *
20550931 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGTTAAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
20550976 ACCGA
1 ACCGA
20550981 GTATCTGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
Found at i:20551101 original size:38 final size:37
Alignment explanation
Indices: 20551055--20551127 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 37
20551045 AGGTGTGGAA
20551055 TTGAATTGAATAT-CGACTTAGAAA-TGGAAAAGTGAATT
1 TTGAATTGAAT-TGCGA-TT-GAAAGTGGAAAAGTGAATT
*
20551093 TTGAATTGAATTGTGATTGAAAGTGGAAAAGTGAA
1 TTGAATTGAATTGCGATTGAAAGTGGAAAAGTGAA
20551128 ATTATGAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 4 0.12
37 15 0.47
38 13 0.41
ACGTcount: A:0.41, C:0.03, G:0.25, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATTGCGATTGAAAGTGGAAAAGTGAATT
Found at i:20554983 original size:26 final size:26
Alignment explanation
Indices: 20554947--20554997 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20554937 ATGCTCTGTG
20554947 TAGAGATGTACGAGTGTTGCATCTTA
1 TAGAGATGTACGAGTGTTGCATCTTA
*
20554973 TAGAGATGTACTAGTGTTGCATCTT
1 TAGAGATGTACGAGTGTTGCATCTT
20554998 GACGCCTAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.37
Consensus pattern (26 bp):
TAGAGATGTACGAGTGTTGCATCTTA
Found at i:20555947 original size:28 final size:28
Alignment explanation
Indices: 20555907--20556014 Score: 162
Period size: 28 Copynumber: 3.9 Consensus size: 28
20555897 ATACGACATA
* * * *
20555907 CAGTAATAATCTGGGCCTCAGCCCTAAG
1 CAGTAACAGTCTGGGCCTTAGCCCAAAG
20555935 CAGTAACAGTCTGGGCCTTAGCCCAAAG
1 CAGTAACAGTCTGGGCCTTAGCCCAAAG
*
20555963 CAGTAACAGTGTGGGCCTTAGCCCAAAG
1 CAGTAACAGTCTGGGCCTTAGCCCAAAG
*
20555991 CAGTAACAGTGTGGGCCTTAGCCC
1 CAGTAACAGTCTGGGCCTTAGCCC
20556015 TATACAGAAA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 75 1.00
ACGTcount: A:0.27, C:0.28, G:0.26, T:0.19
Consensus pattern (28 bp):
CAGTAACAGTCTGGGCCTTAGCCCAAAG
Found at i:20556027 original size:56 final size:56
Alignment explanation
Indices: 20555918--20556028 Score: 161
Period size: 56 Copynumber: 2.0 Consensus size: 56
20555908 AGTAATAATC
* *
20555918 TGGGCCTCAGCCCTAAGCAGTAACAGTCTGGGCCTTAGCCCAAAGCAGTAACAGTG
1 TGGGCCTCAGCCCAAAGCAGTAACAGTCTGGGCCTTAGCCCAAAGCAGAAACAGTG
* * *
20555974 TGGGCCTTAGCCCAAAGCAGTAACAGTGTGGGCCTTAGCCCTATA-CAGAAACAGT
1 TGGGCCTCAGCCCAAAGCAGTAACAGTCTGGGCCTTAGCCC-AAAGCAGAAACAGT
20556029 ATAGTACAGT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
56 47 0.96
57 2 0.04
ACGTcount: A:0.28, C:0.27, G:0.26, T:0.19
Consensus pattern (56 bp):
TGGGCCTCAGCCCAAAGCAGTAACAGTCTGGGCCTTAGCCCAAAGCAGAAACAGTG
Found at i:20556028 original size:28 final size:28
Alignment explanation
Indices: 20555918--20556014 Score: 167
Period size: 28 Copynumber: 3.5 Consensus size: 28
20555908 AGTAATAATC
* * *
20555918 TGGGCCTCAGCCCTAAGCAGTAACAGTC
1 TGGGCCTTAGCCCAAAGCAGTAACAGTG
20555946 TGGGCCTTAGCCCAAAGCAGTAACAGTG
1 TGGGCCTTAGCCCAAAGCAGTAACAGTG
20555974 TGGGCCTTAGCCCAAAGCAGTAACAGTG
1 TGGGCCTTAGCCCAAAGCAGTAACAGTG
20556002 TGGGCCTTAGCCC
1 TGGGCCTTAGCCC
20556015 TATACAGAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (28 bp):
TGGGCCTTAGCCCAAAGCAGTAACAGTG
Found at i:20556370 original size:27 final size:27
Alignment explanation
Indices: 20556308--20556396 Score: 85
Period size: 27 Copynumber: 3.3 Consensus size: 27
20556298 TATTTTACCC
*
20556308 TTTACCCTAT-AGGGGTATTTCAATCAT
1 TTTACCCT-TCAGGGGTATTTCAGTCAT
* * * *
20556335 TTCAGCCTTCAGGGATATTTTAGTCAT
1 TTTACCCTTCAGGGGTATTTCAGTCAT
*
20556362 TTTACCCTTC-GGAGGTATTTCGGTCAT
1 TTTACCCTTCAGG-GGTATTTCAGTCAT
20556389 TTT-CCCTT
1 TTTACCCTT
20556397 TGAGAGTTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (27 bp):
TTTACCCTTCAGGGGTATTTCAGTCAT
Found at i:20556421 original size:26 final size:27
Alignment explanation
Indices: 20556358--20556423 Score: 84
Period size: 25 Copynumber: 2.5 Consensus size: 27
20556348 GATATTTTAG
* *
20556358 TCATTTTACCCTTCGGAGGTATTTCGG
1 TCATTTTACCCTTTGGAGGTATTTCGA
20556385 TCATTTT-CCCTTT-GAGAGT-TTTCGA
1 TCATTTTACCCTTTGGAG-GTATTTCGA
20556410 TCATTTTACCCTTT
1 TCATTTTACCCTTT
20556424 AAGTGTATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 15 0.43
26 13 0.37
27 7 0.20
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.47
Consensus pattern (27 bp):
TCATTTTACCCTTTGGAGGTATTTCGA
Found at i:20563255 original size:28 final size:28
Alignment explanation
Indices: 20563214--20563320 Score: 144
Period size: 28 Copynumber: 3.8 Consensus size: 28
20563204 ATACAACATA
* *
20563214 CAGTCACAATCTGGGCCTAAGCCCTAAG
1 CAGTAACAGTCTGGGCCTAAGCCCTAAG
*
20563242 CAGTAACAGTCTGGGCCTGAGCCCTAAG
1 CAGTAACAGTCTGGGCCTAAGCCCTAAG
*
20563270 CAGTAACAGTCTGGGCCTTAA-CCCAAAG
1 CAGTAACAGTCTGGGCC-TAAGCCCTAAG
* *
20563298 CAGTAACAGTGTGGGCCTTAGCC
1 CAGTAACAGTCTGGGCCTAAGCC
20563321 TAGTATAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
27 2 0.03
28 66 0.94
29 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.19
Consensus pattern (28 bp):
CAGTAACAGTCTGGGCCTAAGCCCTAAG
Found at i:20563716 original size:27 final size:26
Alignment explanation
Indices: 20563665--20563940 Score: 101
Period size: 27 Copynumber: 10.3 Consensus size: 26
20563655 GAGGTATAAC
* * *
20563665 AGTCAATTTACCCTATAGGGTTATTTT
1 AGTC-ATTTACCCTTTGGGGGTATTTT
* *
20563692 AGTCATTTCACCGTTCGGGGGTA-TTT
1 AGTCATTT-ACCCTTTGGGGGTATTTT
* *
20563718 CGATCATTGTACCCTTTGGGGGTATTTC
1 AG-TCATT-TACCCTTTGGGGGTATTTT
* * **
20563746 GGTCATTTTACCTTTTAAGGGTATTTT
1 AGTCA-TTTACCCTTTGGGGGTATTTT
* * ** *
20563773 AGTCATTTTGCCCTTCGAAGGTATTTC
1 AGTCA-TTTACCCTTTGGGGGTATTTT
* * * ** *
20563800 AGTCATTAGAGCCTTCGAAGATA-TTT
1 AGTCATT-TACCCTTTGGGGGTATTTT
* * *
20563826 CGATCATTTTACCCTTCGGGGGTATTTC
1 AG-TCA-TTTACCCTTTGGGGGTATTTT
* ** * *
20563854 GGTCATTTTACCC-TTCAGGATATTTC
1 AGTCA-TTTACCCTTTGGGGGTATTTT
* * *
20563880 GGTTATTTTACCCTTTGGGGGTATTTC
1 AGTCA-TTTACCCTTTGGGGGTATTTT
* *
20563907 A-TCATTTTACCCTTTGAGGGTATTTC
1 AGTCA-TTTACCCTTTGGGGGTATTTT
20563933 AGTCATTT
1 AGTCATTT
20563941 TAGGCCTATT
Statistics
Matches: 193, Mismatches: 45, Indels: 23
0.74 0.17 0.09
Matches are distributed among these distances:
26 61 0.32
27 121 0.63
28 11 0.06
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.43
Consensus pattern (26 bp):
AGTCATTTACCCTTTGGGGGTATTTT
Found at i:20563744 original size:54 final size:54
Alignment explanation
Indices: 20563686--20563942 Score: 243
Period size: 54 Copynumber: 4.8 Consensus size: 54
20563676 CCTATAGGGT
* * * * * *
20563686 TATTTTAGTCATTTCACCGTTCGGGGGTATTTCGATCATTGTACCCTTTGGGGG
1 TATTTCAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGGGGG
* * ** * * **
20563740 TATTTCGGTCATTTTACCTTTTAAGGGTATTT-TAGTCATTTTGCCCTTCGAAGG
1 TATTTCAGTCATTTTACCCTTCGAGGGTATTTCGA-TCATTTTACCCTTCGGGGG
** * * *
20563794 TATTTCAGTCATTAGAGCCTTCGAAGATATTTCGATCATTTTACCCTTCGGGGG
1 TATTTCAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGGGGG
* * * * *
20563848 TATTTCGGTCATTTTACCCTTC-AGGATATTTCGGTTATTTTACCCTTTGGGGG
1 TATTTCAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGGGGG
*
20563901 TATTTCA-TCATTTTACCCTTTGAGGGTATTTC-AGTCATTTTA
1 TATTTCAGTCATTTTACCCTTCGAGGGTATTTCGA-TCATTTTA
20563943 GGCCTATTAT
Statistics
Matches: 160, Mismatches: 39, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
52 13 0.08
53 50 0.31
54 96 0.60
55 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.44
Consensus pattern (54 bp):
TATTTCAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTCGGGGG
Found at i:20563796 original size:81 final size:80
Alignment explanation
Indices: 20563671--20563942 Score: 266
Period size: 81 Copynumber: 3.4 Consensus size: 80
20563661 TAACAGTCAA
* * * * *
20563671 TTTACCCTAT-AGGGTTATTTTAGTCATTTCACCGTTCGGGGGTATTTCGATCATTGTACCCTTT
1 TTTACCCTTTGAGGG-TATTTCAGTCATTTTACCCTTC-GAGGTATTTCGATCATTGTACCCTTT
*
20563735 GGGGGTATTTCGGTCAT
64 GGGGGTATTTCGATCAT
* * * * *
20563752 TTTACCTTTTAAGGGTATTTTAGTCATTTTGCCCTTCGAAGGTATTTC-AGTCATTAG-AGCCTT
1 TTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTCG-AGGTATTTCGA-TCATT-GTACCCTT
* ** *
20563815 CGAAGATATTTCGATCAT
63 TGGGGGTATTTCGATCAT
* * * * * *
20563833 TTTACCCTTCGGGGGTATTTCGGTCATTTTACCCTTC-AGGATATTTCGGTTATTTTACCCTTTG
1 TTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTCGAGG-TATTTCGATCATTGTACCCTTTG
20563897 GGGGTATTTC-ATCAT
65 GGGGTATTTCGATCAT
20563912 TTTACCCTTTGAGGGTATTTCAGTCATTTTA
1 TTTACCCTTTGAGGGTATTTCAGTCATTTTA
20563943 GGCCTATTAT
Statistics
Matches: 154, Mismatches: 30, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
79 36 0.23
80 25 0.16
81 88 0.57
82 5 0.03
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43
Consensus pattern (80 bp):
TTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTCGAGGTATTTCGATCATTGTACCCTTTGG
GGGTATTTCGATCAT
Found at i:20569243 original size:22 final size:21
Alignment explanation
Indices: 20569213--20569257 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
20569203 TATTTAACCC
*
20569213 AAAATAATTTTGATTA-AAATT
1 AAAATAATTAT-ATTATAAATT
20569234 AAAATTAATTATATTATAAATT
1 AAAA-TAATTATATTATAAATT
20569256 AA
1 AA
20569258 TATTCATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (21 bp):
AAAATAATTATATTATAAATT
Found at i:20570098 original size:41 final size:40
Alignment explanation
Indices: 20570053--20570154 Score: 141
Period size: 41 Copynumber: 2.5 Consensus size: 40
20570043 TGATTCAGTA
20570053 CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATATTT
1 CACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATATTT
* * *
20570094 CACCGGCATTAAGCCTGCTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAGACATATAGTCTGAAATATTT
*
20570135 CACCGGCAATAAGCCTGCTA
1 CACCGGC-ATTAGCCTGCTA
20570155 AGCGCTAAGC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 2 0.04
41 51 0.93
42 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAGACATATAGTCTGAAATATTT
Found at i:20570169 original size:41 final size:41
Alignment explanation
Indices: 20570053--20570169 Score: 112
Period size: 41 Copynumber: 2.9 Consensus size: 41
20570043 TGATTCAGTA
* * * * *
20570053 CACCGGCACTTAGCCTGCTAGACA-TATAGTCTGAAATATTT
1 CACCGGCAATAAGCCTGCTAGACACTA-AGCCTGAAGTGTTT
* * * *
20570094 CACCGGCATTAAGCCTGCTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCAATAAGCCTGCTAGACACTAAGCCTGAAGTGTTT
*
20570135 CACCGGCAATAAGCCTGCTA-AGCGCTAAGCCTGAA
1 CACCGGCAATAAGCCTGCTAGA-CACTAAGCCTGAA
20570170 AATCTCAATT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
40 1 0.02
41 62 0.97
42 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
CACCGGCAATAAGCCTGCTAGACACTAAGCCTGAAGTGTTT
Found at i:20571766 original size:13 final size:13
Alignment explanation
Indices: 20571748--20571772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20571738 CAATCAAATG
20571748 CACACAAAATAAA
1 CACACAAAATAAA
20571761 CACACAAAATAA
1 CACACAAAATAA
20571773 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:20576519 original size:21 final size:20
Alignment explanation
Indices: 20576493--20576537 Score: 72
Period size: 21 Copynumber: 2.2 Consensus size: 20
20576483 TTGTGTCAAT
20576493 TTATATAGCGTTGGGCACAA
1 TTATATAGCGTTGGGCACAA
*
20576513 CTTATATAGCGTTGTGCACAA
1 -TTATATAGCGTTGGGCACAA
20576534 TTAT
1 TTAT
20576538 TACTTCAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (20 bp):
TTATATAGCGTTGGGCACAA
Found at i:20591015 original size:79 final size:79
Alignment explanation
Indices: 20590884--20591261 Score: 442
Period size: 79 Copynumber: 4.8 Consensus size: 79
20590874 ACATATTCAC
* * * * *
20590884 TTTTAAGCATATATC-CTATTACACACATATTCACCTGACATCCAAGCATATATCACAATACTCA
1 TTTTAAGCATATATCAC-AATACTCATATAATCACCTAACATCCAAGCATATATCACAATACTCA
*
20590948 TATAATCACATAATA
65 TATAATCACATAACA
20590963 TTTTAAGCATATATCACAATACTCATATAATCACCTAACATCCAAGCATATATCACAATACTCAT
1 TTTTAAGCATATATCACAATACTCATATAATCACCTAACATCCAAGCATATATCACAATACTCAT
20591028 ATAATCACATAACA
66 ATAATCACATAACA
** *
20591042 TTTTAAGCATATATCACAATACTTGTATAATCACCTAACATCCAAGCATATATCACAATACTCGT
1 TTTTAAGCATATATCACAATACTCATATAATCACCTAACATCCAAGCATATATCACAATACTCAT
*
20591107 ATAATCACATAGCA
66 ATAATCACATAACA
* ** * * * ** *
20591121 -TTCAAGCATATATCACGGT-GTACATATAATCTCATAACATTTAAGCATATATCACAATACTCG
1 TTTTAAGCATATATCACAATACT-CATATAATCACCTAACATCCAAGCATATATCACAATACTCA
20591184 TATAATCACATAACA
65 TATAATCACATAACA
* * * * * ** * *
20591199 -TTCAAGCCTATATCACAATA-TACATATAATCTCATAAAATTTAAGAATATATAACAATACTCA
1 TTTTAAGCATATATCACAATACT-CATATAATCACCTAACATCCAAGCATATATCACAATACTCA
20591262 AAACATCTTT
Statistics
Matches: 268, Mismatches: 28, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
77 1 0.00
78 120 0.45
79 146 0.54
80 1 0.00
ACGTcount: A:0.43, C:0.22, G:0.05, T:0.31
Consensus pattern (79 bp):
TTTTAAGCATATATCACAATACTCATATAATCACCTAACATCCAAGCATATATCACAATACTCAT
ATAATCACATAACA
Found at i:20591021 original size:39 final size:39
Alignment explanation
Indices: 20590921--20591261 Score: 416
Period size: 39 Copynumber: 8.7 Consensus size: 39
20590911 TATTCACCTG
*
20590921 ACATCCAAGCATATATCACAATACTCATATAATCACATA
1 ACATTCAAGCATATATCACAATACTCATATAATCACATA
* * *
20590960 ATATTTTAAGCATATATCACAATACTCATATAATCACCTA
1 ACA-TTCAAGCATATATCACAATACTCATATAATCACATA
*
20591000 ACATCCAAGCATATATCACAATACTCATATAATCACATA
1 ACATTCAAGCATATATCACAATACTCATATAATCACATA
* ** *
20591039 ACATTTTAAGCATATATCACAATACTTGTATAATCACCTA
1 ACA-TTCAAGCATATATCACAATACTCATATAATCACATA
* *
20591079 ACATCCAAGCATATATCACAATACTCGTATAATCACATA
1 ACATTCAAGCATATATCACAATACTCATATAATCACATA
* ** * *
20591118 GCATTCAAGCATATATCACGGT-GTACATATAATCTCATA
1 ACATTCAAGCATATATCACAATACT-CATATAATCACATA
* *
20591157 ACATTTAAGCATATATCACAATACTCGTATAATCACATA
1 ACATTCAAGCATATATCACAATACTCATATAATCACATA
* *
20591196 ACATTCAAGCCTATATCACAATA-TACATATAATCTCATA
1 ACATTCAAGCATATATCACAATACT-CATATAATCACATA
* * * *
20591235 AAATTTAAGAATATATAACAATACTCA
1 ACATTCAAGCATATATCACAATACTCA
20591262 AAACATCTTT
Statistics
Matches: 256, Mismatches: 40, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
38 2 0.01
39 183 0.71
40 71 0.28
ACGTcount: A:0.44, C:0.22, G:0.05, T:0.30
Consensus pattern (39 bp):
ACATTCAAGCATATATCACAATACTCATATAATCACATA
Found at i:20600608 original size:11 final size:11
Alignment explanation
Indices: 20600577--20600609 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
20600567 TAAAATATCC
20600577 TAACAATA-AA
1 TAACAATATAA
20600587 -AACAATATAA
1 TAACAATATAA
20600597 TAACAATATAA
1 TAACAATATAA
20600608 TA
1 TA
20600610 GAATAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.33
10 2 0.10
11 12 0.57
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (11 bp):
TAACAATATAA
Found at i:20601298 original size:19 final size:19
Alignment explanation
Indices: 20601267--20601304 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
20601257 TAATCACAAC
20601267 AATTGATTATTATAATTAT
1 AATTGATTATTATAATTAT
*
20601286 AATT-ATTAGTTATTATTAT
1 AATTGATTA-TTATAATTAT
20601305 TGAATAATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
AATTGATTATTATAATTAT
Found at i:20611665 original size:59 final size:59
Alignment explanation
Indices: 20611594--20611712 Score: 229
Period size: 59 Copynumber: 2.0 Consensus size: 59
20611584 CTGCTATGAG
*
20611594 TATGTTTCTTGGATTATTTTGTAATGTCACAACATTACTCATAGTGATTAATATGTATA
1 TATGTTTCTTGGATTATTTTGTAATGTCACAACATTACTCATAGCGATTAATATGTATA
20611653 TATGTTTCTTGGATTATTTTGTAATGTCACAACATTACTCATAGCGATTAATATGTATA
1 TATGTTTCTTGGATTATTTTGTAATGTCACAACATTACTCATAGCGATTAATATGTATA
20611712 T
1 T
20611713 GATCCTCAGA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.45
Consensus pattern (59 bp):
TATGTTTCTTGGATTATTTTGTAATGTCACAACATTACTCATAGCGATTAATATGTATA
Found at i:20614907 original size:27 final size:27
Alignment explanation
Indices: 20614851--20614908 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
20614841 AAAATCATAT
* *
20614851 TTAATAATTTCATTTTAAAATATTTCA
1 TTAATAATTTCATTTTAAAATAATTAA
* *
20614878 TTAATAATTTGAGTTTT-AATTAATTAA
1 TTAATAATTTCA-TTTTAAAATAATTAA
20614905 TTAA
1 TTAA
20614909 ATTGGATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.52
Consensus pattern (27 bp):
TTAATAATTTCATTTTAAAATAATTAA
Found at i:20628053 original size:33 final size:33
Alignment explanation
Indices: 20628010--20628075 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
20628000 CAAATACAGT
* *
20628010 TATGCGCTGACTGCCTTCGGACGTACTAACACC
1 TATGCACTGACTGCCTACGGACGTACTAACACC
20628043 TATGCACTGACTGCCTACGGACGTACTAACACC
1 TATGCACTGACTGCCTACGGACGTACTAACACC
20628076 CAGAGTGTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (33 bp):
TATGCACTGACTGCCTACGGACGTACTAACACC
Found at i:20633858 original size:43 final size:43
Alignment explanation
Indices: 20633796--20633889 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
20633786 AGCTACATGG
* * * * *
20633796 GACACATGGCTGTGCCGCATGGTCATGTGTCACACACGGTTGA
1 GACACACGGCCGTGCCGCATGGCCATGTGTCACACACGGCTAA
* * *
20633839 GACACACGGCCGTGTCGCATGGCCGTGTGTCACACATGGCTAA
1 GACACACGGCCGTGCCGCATGGCCATGTGTCACACACGGCTAA
20633882 GACACACG
1 GACACACG
20633890 CCCTTGTCTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (43 bp):
GACACACGGCCGTGCCGCATGGCCATGTGTCACACACGGCTAA
Found at i:20638757 original size:48 final size:48
Alignment explanation
Indices: 20638691--20638956 Score: 318
Period size: 48 Copynumber: 5.5 Consensus size: 48
20638681 TAGATTTCTC
* * * * * * * *
20638691 GGTGGCCTACACACAGTCCATACCACCTTTGTGTAATAATAGATTCTT
1 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATATTAACAGATTATT
* * * *
20638739 GGTGGCCTGCACATAGTCCGTGCCACCCTTATATCTTAACAGAATATT
1 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATATTAACAGATTATT
20638787 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATATTAACA-ATTAATT
1 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATATTAACAGATT-ATT
* * * *
20638835 GGTGGCCTGCACACAGTCCGTGCCACCATTGTATCTTAAGAGAATATT
1 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATATTAACAGATTATT
* * * *
20638883 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCTTAGCAAAATATT
1 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATATTAACAGATTATT
**
20638931 GGTGGCCTGCACACAGTGTGTGCCAC
1 GGTGGCCTGCACACAGTCCGTGCCAC
20638957 ATATGCGACC
Statistics
Matches: 190, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
47 2 0.01
48 186 0.98
49 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (48 bp):
GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATATTAACAGATTATT
Found at i:20638954 original size:144 final size:144
Alignment explanation
Indices: 20638691--20638956 Score: 388
Period size: 144 Copynumber: 1.8 Consensus size: 144
20638681 TAGATTTCTC
* * * * * *
20638691 GGTGGCCTACACACAGTCCATACCACCTTTGTGTAATAATAGATTCTTGGTGGCCTGCACATAGT
1 GGTGGCCTACACACAGTCCATACCACCATTGTATAATAAGAGAATATTGGTGGCCTGCACACAGT
*
20638756 CCGTGCCACCCTTATATCTTAACAGAATATTGGTGGCCTGCACACAGTCCGTGCCACCCTTGTAT
66 CCGTGCCACCCTTATATCTTAACAAAATATTGGTGGCCTGCACACAGTCCGTGCCACCCTTGTAT
20638821 ATTAACAATTAATT
131 ATTAACAATTAATT
* * * **
20638835 GGTGGCCTGCACACAGTCCGTGCCACCATTGTATCTTAAGAGAATATTGGTGGCCTGCACACAGT
1 GGTGGCCTACACACAGTCCATACCACCATTGTATAATAAGAGAATATTGGTGGCCTGCACACAGT
* * **
20638900 CCGTGCCACCCTTGTATCTTAGCAAAATATTGGTGGCCTGCACACAGTGTGTGCCAC
66 CCGTGCCACCCTTATATCTTAACAAAATATTGGTGGCCTGCACACAGTCCGTGCCAC
20638957 ATATGCGACC
Statistics
Matches: 106, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
144 106 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (144 bp):
GGTGGCCTACACACAGTCCATACCACCATTGTATAATAAGAGAATATTGGTGGCCTGCACACAGT
CCGTGCCACCCTTATATCTTAACAAAATATTGGTGGCCTGCACACAGTCCGTGCCACCCTTGTAT
ATTAACAATTAATT
Found at i:20641657 original size:30 final size:30
Alignment explanation
Indices: 20641623--20641785 Score: 184
Period size: 30 Copynumber: 5.4 Consensus size: 30
20641613 GGTCATTTCC
*
20641623 ATCCCTTTTCATAATTTGATAGCCAAAGCT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
* * *
20641653 ATCCCTTTTCAAAATTCGATAGTCGAAGCT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
** * * * * *
20641683 ATCCCTTTTCATTGTTCGATGGTCGTCA-CC
1 ATCCCTTTTCATAATTTGATAGCCG-AAGCT
*
20641713 ATCCCTTTTCATAATTTGATAGCCGAGGCT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
*
20641743 ATCCCTTTTCATTATTTTGATAGCCGAAGCT
1 ATCCCTTTTCA-TAATTTGATAGCCGAAGCT
20641774 ATCCCTTTTCAT
1 ATCCCTTTTCAT
20641786 TACTTGATGA
Statistics
Matches: 110, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
30 81 0.74
31 29 0.26
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAGCCGAAGCT
Found at i:20641715 original size:90 final size:90
Alignment explanation
Indices: 20641594--20641786 Score: 271
Period size: 90 Copynumber: 2.1 Consensus size: 90
20641584 GGTAGTCACC
* * **
20641594 ATCCCTATTCATTTTTGATGGTCATTTCCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCT
1 ATCCCTTTTCATTTTCGATGGTCATCACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCT
*
20641659 TTTCA-AAATTCGATAGTCGAAGCT
66 TTTCATAAATTCGATAGCCGAAGCT
* * *
20641683 ATCCCTTTTCATTGTTCGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCGAGGCTATCCC
1 ATCCCTTTTCATT-TTCGATGGTCATCACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCC
* * *
20641748 TTTTCATTATTTTGATAGCCGAAGCT
65 TTTTCATAAATTCGATAGCCGAAGCT
20641774 ATCCCTTTTCATT
1 ATCCCTTTTCATT
20641787 ACTTGATGAT
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
89 12 0.13
90 51 0.56
91 28 0.31
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.40
Consensus pattern (90 bp):
ATCCCTTTTCATTTTCGATGGTCATCACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCT
TTTCATAAATTCGATAGCCGAAGCT
Found at i:20647625 original size:22 final size:23
Alignment explanation
Indices: 20647608--20647652 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
20647598 TTTTCACTTT
20647608 CAAACAT-TATTCAATTCAATTC
1 CAAACATATATTCAATTCAATTC
*
20647630 CACACATATATTCATCATTCAAT
1 CAAACATATATTCA--ATTCAAT
20647653 CACACTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 6 0.32
25 7 0.37
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (23 bp):
CAAACATATATTCAATTCAATTC
Found at i:20647889 original size:51 final size:50
Alignment explanation
Indices: 20647831--20648017 Score: 188
Period size: 51 Copynumber: 3.7 Consensus size: 50
20647821 CCGGTTCACA
* *
20647831 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATTCGATACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT-ACTATTCGGTACATG
* *
20647882 TAGTAGCCTGCACATAGTACTACACACGTGATCGA-AGCTATCCGGT--ATG
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATA-CTATTCGGTACATG
* * *
20647931 CATAGTAGCAC-GCACATAGTACTACACATGCGACC-TA-TCATTCTGGTACACG
1 --TAGTAGC-CTGCACATAGTACTACACACGTGACCATACT-ATTC-GGTACATG
*
20647983 TAATAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
20648018 CACTTTCACT
Statistics
Matches: 112, Mismatches: 12, Indels: 24
0.76 0.08 0.16
Matches are distributed among these distances:
48 1 0.01
49 7 0.06
50 34 0.30
51 65 0.58
52 5 0.04
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACTATTCGGTACATG
Found at i:20648036 original size:101 final size:102
Alignment explanation
Indices: 20647825--20648047 Score: 246
Period size: 101 Copynumber: 2.2 Consensus size: 102
20647815 ATGATACCGG
* * *
20647825 TTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATTCGATACATGTAGTAGCC
1 TTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATTCGATACACGTAATAGCC
*
20647890 TGCACATAGTACTACACACGTGATCGAAGCTATCCGGT
66 TGCACATAGTACTACACACGTGATCCAAGCTATCC-GT
* * *
20647928 AT-GCATAGTAGCAC-GCACATAGTACTACACATGCGACC-T-A-TCATTCTGGTACACGTAATA
1 TTCACATAGTAGC-CTGCACATAGTACTACACATGCGACCATCACT-ATTC-GATACACGTAATA
*
20647988 GCCTGCACATAGTACTACACACGTGA-CCATCA-CTTTCAC-T
63 GCCTGCACATAGTACTACACACGTGATCCA--AGCTATC-CGT
*
20648028 TTCACATAGTGGCCTGCACA
1 TTCACATAGTAGCCTGCACA
20648048 CAGTCCATGC
Statistics
Matches: 101, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
99 1 0.01
100 10 0.10
101 54 0.53
102 34 0.34
103 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (102 bp):
TTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATTCGATACACGTAATAGCC
TGCACATAGTACTACACACGTGATCCAAGCTATCCGT
Found at i:20657518 original size:20 final size:20
Alignment explanation
Indices: 20657493--20657531 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
20657483 TCCTTTCTTA
20657493 TTTACTTACTCT-CTTGCTTG
1 TTTACTTACT-TGCTTGCTTG
20657513 TTTACTTACTTGCTTGCTT
1 TTTACTTACTTGCTTGCTT
20657532 AAACAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.10, C:0.23, G:0.10, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTGCTTG
Found at i:20657915 original size:50 final size:50
Alignment explanation
Indices: 20657817--20657923 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 50
20657807 ACATGGGAGT
* * * *
20657817 TCTCATATTGGTGCCCATGCCATGTCCCAGACATGGTTTGACGGGGGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTTTGACAGGGGACC
* * * * *
20657867 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTTTTATATGGGACG
1 TCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTTTGACAGGGGACC
20657917 TCTCATA
1 TCTCATA
20657924 ACCTCAATCA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (50 bp):
TCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTTTGACAGGGGACC
Found at i:20664951 original size:50 final size:50
Alignment explanation
Indices: 20664897--20665089 Score: 228
Period size: 50 Copynumber: 3.8 Consensus size: 50
20664887 AGGTTCCCAT
** *
20664897 GCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATTTCGGTGCCAAC
1 GCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* *
20664947 GCCATGTCCCAAACATGGTTTTACATGAGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* * *
20664997 GCCATGTCCTAAACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAAT
1 GCCATGTCCCAAACATGGTCTTACATGGGACCTCTC---ATCTC---GGTGCCAAC
* *
20665053 GCCATTTCCCAGACATGGTCTTACATGGGA--TCTCATC
1 GCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATC
20665090 CTCTTAATGT
Statistics
Matches: 124, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
50 78 0.63
51 3 0.02
53 5 0.04
54 4 0.03
56 34 0.27
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
Found at i:20665459 original size:30 final size:30
Alignment explanation
Indices: 20665425--20665482 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
20665415 CCTCGACTCT
20665425 AACTTTGACAAAATTACAATTTTGCCCCTA
1 AACTTTGACAAAATTACAATTTTGCCCCTA
* * * *
20665455 AACTTTTACATAATTACACTTTTTCCCC
1 AACTTTGACAAAATTACAATTTTGCCCC
20665483 AAAGCTTGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.26, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTGACAAAATTACAATTTTGCCCCTA
Found at i:20670087 original size:30 final size:30
Alignment explanation
Indices: 20670039--20670217 Score: 86
Period size: 30 Copynumber: 5.9 Consensus size: 30
20670029 GATGGTGACG
*
20670039 GCTATCAAAATTATGAAAAGAGATGGCTTCA
1 GCTATC-AAATCATGAAAAGAGATGGCTTCA
* * *
20670070 GCTATCGAATCATGAAAA-AGGATAGCTTCG
1 GCTATCAAATCATGAAAAGA-GATGGCTTCA
* *
20670100 GCTATCAAATTATGTAAAAG-GATGG--TGA
1 GCTATCAAATCATG-AAAAGAGATGGCTTCA
* * *
20670128 TGACCATC-AA-CAGTGAAAAAAGATGG--TGA
1 -G-CTATCAAATCA-TGAAAAGAGATGGCTTCA
* * * *
20670157 CGACCATCAAAATTATGAAAAGGGATAGCTTCA
1 -G-CTATC-AAATCATGAAAAGAGATGGCTTCA
* *
20670190 GCTATCAAATCATGAAAAGGGATAGCTT
1 GCTATCAAATCATGAAAAGAGATGGCTT
20670218 TGGCTATCGA
Statistics
Matches: 116, Mismatches: 20, Indels: 25
0.72 0.12 0.16
Matches are distributed among these distances:
28 6 0.05
29 21 0.18
30 59 0.51
31 26 0.22
32 2 0.02
33 2 0.02
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (30 bp):
GCTATCAAATCATGAAAAGAGATGGCTTCA
Found at i:20670166 original size:120 final size:120
Alignment explanation
Indices: 20669961--20670231 Score: 384
Period size: 120 Copynumber: 2.2 Consensus size: 120
20669951 TCATCGACGA
* ***
20669961 ATGAAAAGGGATAGCTTCGGCTATCAATTATGAAATGGGATGGTGATGACCATCGAATTTTGAAA
1 ATGAAAAGGGATAGCTTCGGCTATCAATTATGAAATAGGATGGTGATGACCATCGAACAGTGAAA
** * * * *
20670026 AGGGATGGTGACGGCTATCAAAATTATGAAAAGAGATGGCTTCAGCTATCGAATC
66 AAAGATGGTGACGACCATCAAAATTATGAAAAGAGATAGCTTCAGCTATCAAATC
*
20670081 ATGAAAAAGGATAGCTTCGGCTATCAAATTATGTAAA-AGGATGGTGATGACCATC-AACAGTGA
1 ATGAAAAGGGATAGCTTCGGCTATC-AATTATG-AAATAGGATGGTGATGACCATCGAACAGTGA
*
20670144 AAAAAGATGGTGACGACCATCAAAATTATGAAAAGGGATAGCTTCAGCTATCAAATC
64 AAAAAGATGGTGACGACCATCAAAATTATGAAAAGAGATAGCTTCAGCTATCAAATC
*
20670201 ATGAAAAGGGATAGCTTTGGCTATCGAATTA
1 ATGAAAAGGGATAGCTTCGGCTATC-AATTA
20670232 CAGAAAGGAA
Statistics
Matches: 134, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
120 107 0.80
121 24 0.18
122 3 0.02
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (120 bp):
ATGAAAAGGGATAGCTTCGGCTATCAATTATGAAATAGGATGGTGATGACCATCGAACAGTGAAA
AAAGATGGTGACGACCATCAAAATTATGAAAAGAGATAGCTTCAGCTATCAAATC
Found at i:20670177 original size:29 final size:29
Alignment explanation
Indices: 20670106--20670178 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 29
20670096 TTCGGCTATC
*
20670106 AAATTATGTAAAAGGATGGTGATGACCATCA
1 AAATTATG-AAAA-GATGGTGACGACCATCA
* * *
20670137 ACAGTGA-AAAAAGATGGTGACGACCATCA
1 A-AATTATGAAAAGATGGTGACGACCATCA
20670166 AAATTATGAAAAG
1 AAATTATGAAAAG
20670179 GGATAGCTTC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
28 3 0.09
29 22 0.67
30 4 0.12
31 1 0.03
32 3 0.09
ACGTcount: A:0.47, C:0.11, G:0.22, T:0.21
Consensus pattern (29 bp):
AAATTATGAAAAGATGGTGACGACCATCA
Found at i:20670197 original size:60 final size:59
Alignment explanation
Indices: 20670029--20670207 Score: 161
Period size: 60 Copynumber: 3.0 Consensus size: 59
20670019 TTTGAAAAGG
* *
20670029 GATGGTGACGGCTATCAAAATTATGAAAAGAGATGGCTTCAGCTATCGAATCATGAAAAAG
1 GATGGTGACGGCTATCAAAATTATGAAAAGGGAT-GCTTCAGCTATC-AATCATGAAAAAA
* * * * *
20670090 GATAGCT-TCGGCTATC-AAATTATGTAAAA-GGATG-GTGATGACCATCAA-CAGTGAAAAAA
1 GAT-GGTGACGGCTATCAAAATTATG-AAAAGGGATGCTTCA-G-CTATCAATCA-TGAAAAAA
* *
20670149 GATGGTGACGACCATCAAAATTATGAAAAGGGATAGCTTCAGCTATCAAATCATGAAAA
1 GATGGTGACGGCTATCAAAATTATGAAAAGGGAT-GCTTCAGCTATC-AATCATGAAAA
20670208 GGGATAGCTT
Statistics
Matches: 92, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
58 6 0.07
59 24 0.26
60 31 0.34
61 25 0.27
62 6 0.07
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (59 bp):
GATGGTGACGGCTATCAAAATTATGAAAAGGGATGCTTCAGCTATCAATCATGAAAAAA
Found at i:20673341 original size:28 final size:28
Alignment explanation
Indices: 20673282--20673356 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 28
20673272 ATCAATGAAT
* * *
20673282 GAAAAGGGATAGCTTTTGCTATCGGATAC
1 GAAAAGGGATAGC-TTCGGTATCGAATAC
*
20673311 GAAAAGAGATAGCTTCGGTATCGAATAC
1 GAAAAGGGATAGCTTCGGTATCGAATAC
20673339 GAAAAGGGATAGCTTCGG
1 GAAAAGGGATAGCTTCGG
20673357 CTATTGATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 29 0.71
29 12 0.29
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (28 bp):
GAAAAGGGATAGCTTCGGTATCGAATAC
Found at i:20675046 original size:27 final size:27
Alignment explanation
Indices: 20674991--20675052 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
20674981 ACACGAATGA
* * *
20674991 TTCCTTTTCATAGATGGCTAGAAATGC
1 TTCCTTTTCATAGATCGCCAGAAAGGC
20675018 TTCCTTTTCATAGATCGCCATG-AAGGC
1 TTCCTTTTCATAGATCGCCA-GAAAGGC
20675045 TTCCTTTT
1 TTCCTTTT
20675053 TTTGGCGTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (27 bp):
TTCCTTTTCATAGATCGCCAGAAAGGC
Found at i:20680005 original size:21 final size:21
Alignment explanation
Indices: 20679979--20680022 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
20679969 TTGTATGTGG
*
20679979 ATGACATACTTATCATAGGAA
1 ATGACATACCTATCATAGGAA
20680000 ATGACATACCTATCATAGGAA
1 ATGACATACCTATCATAGGAA
20680021 AT
1 AT
20680023 CATATATTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (21 bp):
ATGACATACCTATCATAGGAA
Found at i:20695284 original size:21 final size:20
Alignment explanation
Indices: 20695232--20695287 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 20
20695222 AAAAAGAGAT
20695232 TGAAAAATAAATTGAAAGA-
1 TGAAAAATAAATTGAAAGAG
*
20695251 -GAAGAA-AAA--GAAAGAG
1 TGAAAAATAAATTGAAAGAG
20695267 TGGAAAAATAAATTGAAAGAG
1 T-GAAAAATAAATTGAAAGAG
20695288 AGCTTGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 6 0.21
17 3 0.10
18 10 0.34
19 3 0.10
21 7 0.24
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.14
Consensus pattern (20 bp):
TGAAAAATAAATTGAAAGAG
Found at i:20703410 original size:50 final size:50
Alignment explanation
Indices: 20703201--20703489 Score: 201
Period size: 50 Copynumber: 5.7 Consensus size: 50
20703191 GGTAAAGAGA
* **
20703201 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA---TATGAGAAC
* * * * * *
20703257 TCCTATGTAAGAACA-GTCTGGGACATGGCGTTGGCATCGAGATTAGAAGC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAA-C
* * * * * * **
20703307 -CCCATGTAGGACCATGTCTAGGACATGGCGTCGGCACTGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
* *
20703356 TCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
* * * * * **
20703406 TCCCATCTAATATCATATCTGGGATATGGCATTGGCA--G-TACAAGAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAG-AAC
* * *
20703454 ATCCCATATAAGGCCATGTCTGGGACATGGCTTTGG
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
20703490 TATGTTATTA
Statistics
Matches: 184, Mismatches: 44, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
47 4 0.02
48 4 0.02
49 44 0.24
50 97 0.53
52 2 0.01
55 20 0.11
56 13 0.07
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
Found at i:20706423 original size:51 final size:50
Alignment explanation
Indices: 20706259--20706443 Score: 185
Period size: 51 Copynumber: 3.7 Consensus size: 50
20706249 AGTGAAAGTG
*
20706259 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACC-AAATGGT
** * ** * ** *
20706310 A-GGTTGCATGT-TAGTACTATATGCAGGCTACTTTGCGTACCGGATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAATGGT
* * * * * *
20706358 TTCGATCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCACATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAATGGT
20706409 AATGGTCACATGTGTAGTACTATGTGCAGGCTACT
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACT
20706444 GTGTGAACCA
Statistics
Matches: 102, Mismatches: 28, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
48 3 0.03
49 26 0.25
50 14 0.14
51 58 0.57
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAATGGT
Found at i:20706506 original size:45 final size:45
Alignment explanation
Indices: 20706455--20706543 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
20706445 TGTGAACCAA
* *
20706455 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
20706500 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
20706544 AGTATCTGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
Found at i:20708715 original size:45 final size:45
Alignment explanation
Indices: 20708651--20708741 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
20708641 TTTGTGGAAC
20708651 ATGTTATCTCTGGTGATGATATTAAAGTTGACCCCGCCAAGGTAA
1 ATGTTATCTCTGGTGATGATATTAAAGTTGACCCCGCCAAGGTAA
*
20708696 ATGTTATCTCTGGTGATGATATTAAAGTTGACCCTGCCAAGGTAA
1 ATGTTATCTCTGGTGATGATATTAAAGTTGACCCCGCCAAGGTAA
20708741 A
1 A
20708742 GGCAGTTCTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (45 bp):
ATGTTATCTCTGGTGATGATATTAAAGTTGACCCCGCCAAGGTAA
Found at i:20711399 original size:37 final size:37
Alignment explanation
Indices: 20711293--20711391 Score: 139
Period size: 37 Copynumber: 2.7 Consensus size: 37
20711283 TATGTTACTA
20711293 TTCTGATATTTTGATTCGCATTGTAAGCATGCCATAGT
1 TTCTGATATTTTGATTCGCA-TGTAAGCATGCCATAGT
*
20711331 TT-TGATATTCTGATTCGCATGTTAAGCATGCCATA-T
1 TTCTGATATTTTGATTCGCATG-TAAGCATGCCATAGT
* *
20711367 TTCTAATATTTTGATTCGCACGTAA
1 TTCTGATATTTTGATTCGCATGTAA
20711392 AGTATGCCTA
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
36 8 0.15
37 45 0.82
38 2 0.04
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.42
Consensus pattern (37 bp):
TTCTGATATTTTGATTCGCATGTAAGCATGCCATAGT
Found at i:20716609 original size:14 final size:14
Alignment explanation
Indices: 20716590--20716625 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
20716580 TTTTACACCG
20716590 TTTTGTTGTGGCAT
1 TTTTGTTGTGGCAT
20716604 TTTTGTTGTGGCAT
1 TTTTGTTGTGGCAT
20716618 TTTTGTTG
1 TTTTGTTG
20716626 GTAGTCTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.06, C:0.06, G:0.28, T:0.61
Consensus pattern (14 bp):
TTTTGTTGTGGCAT
Found at i:20718670 original size:20 final size:21
Alignment explanation
Indices: 20718626--20718670 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
20718616 TGAATTTGAG
*
20718626 TAAATATGTGATTAAATAAGT
1 TAAATATGTGATTAAATAAGA
* *
20718647 TAAATTTGT-ATTAAATTAGA
1 TAAATATGTGATTAAATAAGA
20718667 TAAA
1 TAAA
20718671 GAAAAGAGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (21 bp):
TAAATATGTGATTAAATAAGA
Found at i:20719030 original size:43 final size:42
Alignment explanation
Indices: 20718969--20719072 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 42
20718959 TCTGATATGT
*
20718969 GATTTCGTGTAAGACCACA-TCTGGGA-TATTGACATCGATTTGA
1 GATTTCGTGTAAGACCACAGT-TGGGACT-TTG-CATAGATTTGA
20719012 GATTTCGTGTAAGACCACAGTTGGGACGTTTGCATAGATTTGA
1 GATTTCGTGTAAGACCACAGTTGGGAC-TTTGCATAGATTTGA
*
20719055 GATTTAAGTGTAAGACCA
1 GATTT-CGTGTAAGACCA
20719073 TGCCTGAGAT
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
43 39 0.71
44 15 0.27
45 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (42 bp):
GATTTCGTGTAAGACCACAGTTGGGACTTTGCATAGATTTGA
Found at i:20719326 original size:35 final size:35
Alignment explanation
Indices: 20719280--20719349 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
20719270 ATGGTTCAAG
20719280 TACGTGCAAAGTTAAATGTTCATGAAAATAAGGTA
1 TACGTGCAAAGTTAAATGTTCATGAAAATAAGGTA
20719315 TACGTGCAAAGTTAAATGTTCATGAAAATAAGGTA
1 TACGTGCAAAGTTAAATGTTCATGAAAATAAGGTA
20719350 AGTATAGTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.43, C:0.09, G:0.20, T:0.29
Consensus pattern (35 bp):
TACGTGCAAAGTTAAATGTTCATGAAAATAAGGTA
Found at i:20726437 original size:15 final size:15
Alignment explanation
Indices: 20726419--20726449 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
20726409 AAACCTGTAA
*
20726419 AAATTAAATTAAACT
1 AAATTAAATAAAACT
20726434 AAATTAAATAAAACT
1 AAATTAAATAAAACT
20726449 A
1 A
20726450 CTAAGTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATTAAATAAAACT
Found at i:20754913 original size:43 final size:43
Alignment explanation
Indices: 20754849--20754953 Score: 113
Period size: 43 Copynumber: 2.4 Consensus size: 43
20754839 TCCCAGATAT
* * *
20754849 GGTCTTACATGTTATCACATATCGACGCCACTGTCCCT-CACAG
1 GGTCTTACATGTAATCACATATCAACGCCAATGT-CCTACACAG
** * * *
20754892 GGTCTTACATGTAATTTCATATCAATGCCAATGTCCTAGACAT
1 GGTCTTACATGTAATCACATATCAACGCCAATGTCCTACACAG
*
20754935 GGTCTTACATGAAATCACA
1 GGTCTTACATGTAATCACA
20754954 CCTCGGGAGT
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
42 3 0.06
43 47 0.94
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATATCAACGCCAATGTCCTACACAG
Found at i:20756432 original size:16 final size:16
Alignment explanation
Indices: 20756411--20756445 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
20756401 CGATATCATC
20756411 AAAGCATTGATATATG
1 AAAGCATTGATATATG
20756427 AAAGCATTGATATATG
1 AAAGCATTGATATATG
20756443 AAA
1 AAA
20756446 TACAATCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.06, G:0.17, T:0.29
Consensus pattern (16 bp):
AAAGCATTGATATATG
Found at i:20762288 original size:43 final size:43
Alignment explanation
Indices: 20762241--20762345 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
20762231 TCCCAGATAT
* * * *
20762241 GGTCTTACATGTTATCACATATCGACACCACTGTCCCACACAG
1 GGTCTTACACGTAATCACATATCAACACCAATGTCCCACACAG
* ** * *
20762284 GGTCTTACACGTAATCTCATATCAATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATCACATATCAACACCAATGTCCCACACAG
*
20762327 GGTCTTACACGAAATCACA
1 GGTCTTACACGTAATCACA
20762346 CCTAGGGTCC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAATCACATATCAACACCAATGTCCCACACAG
Found at i:20771726 original size:19 final size:19
Alignment explanation
Indices: 20771690--20771726 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
20771680 ACAATTGACA
*
20771690 ATAAAAACTAAAAGAAAAC
1 ATAAAAACTAAAAAAAAAC
*
20771709 ATAAAAATTAAAAAAAAA
1 ATAAAAACTAAAAAAAAA
20771727 AATTTCTATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.78, C:0.05, G:0.03, T:0.14
Consensus pattern (19 bp):
ATAAAAACTAAAAAAAAAC
Found at i:20801857 original size:50 final size:50
Alignment explanation
Indices: 20801732--20801911 Score: 197
Period size: 50 Copynumber: 3.6 Consensus size: 50
20801722 CATATTAACA
* * *
20801732 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCCTATAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGA-GTTCTCATAT-CGG
* * *
20801781 TGCCAATGACATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGAGTTCTCATATCGG
* * ** *
20801831 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GCGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC-ATGAGAGTTCTCATATCGG
*
20801881 TGCCAACGCCATGTCCCAGACATGGTCTTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC
20801912 GTGGGACCTC
Statistics
Matches: 111, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
48 4 0.04
49 37 0.33
50 69 0.62
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGAGTTCTCATATCGG
Found at i:20819836 original size:42 final size:42
Alignment explanation
Indices: 20819777--20820014 Score: 282
Period size: 42 Copynumber: 5.6 Consensus size: 42
20819767 GTTACACAGT
* * *
20819777 GGAATTAGCACTTAGCAATCACC-TTTATATTCAAGGATACGG
1 GGAATCAGCACTTAGCAA-CCCCTTTTATAATCAAGGATACGG
* *
20819819 GGAATCAGCACATAGCAACCCCTTTTATAATCAAAGATACGG
1 GGAATCAGCACTTAGCAACCCCTTTTATAATCAAGGATACGG
* * *
20819861 GGAATCAGCACATAGCAACCCCTTTTTTATAATCAAAGATACAG
1 GGAATCAGCACTTAGCAACCCC--TTTTATAATCAAGGATACGG
* * * * *
20819905 GGAATCAGGAGTTAGCAACCCCTTTGATAATC-AGAATACGA
1 GGAATCAGCACTTAGCAACCCCTTTTATAATCAAGGATACGG
* * *
20819946 GGAATCAGTACTTAGCAACCCCTTTGATAATCAAGAATACGG
1 GGAATCAGCACTTAGCAACCCCTTTTATAATCAAGGATACGG
*
20819988 GAAATCAGCACTTAGCAACCCCTTTTA
1 GGAATCAGCACTTAGCAACCCCTTTTA
20820015 CATTCAAGAA
Statistics
Matches: 172, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
41 38 0.22
42 96 0.56
44 38 0.22
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.24
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCCCTTTTATAATCAAGGATACGG
Found at i:20832388 original size:13 final size:13
Alignment explanation
Indices: 20832370--20832395 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20832360 GAGGTATCGG
20832370 GACCTCATTTCTA
1 GACCTCATTTCTA
20832383 GACCTCATTTCTA
1 GACCTCATTTCTA
20832396 TAAATTGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (13 bp):
GACCTCATTTCTA
Found at i:20834508 original size:29 final size:25
Alignment explanation
Indices: 20834455--20834504 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
20834445 TGTTAGTAAA
20834455 TTGCTTATGCTTTGAATGAATCTAT
1 TTGCTTATGCTTTGAATGAATCTAT
20834480 TTGCTTATGCTTTGAATGAATCTAT
1 TTGCTTATGCTTTGAATGAATCTAT
20834505 CTATGTCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (25 bp):
TTGCTTATGCTTTGAATGAATCTAT
Found at i:20847348 original size:13 final size:13
Alignment explanation
Indices: 20847332--20847397 Score: 78
Period size: 13 Copynumber: 5.1 Consensus size: 13
20847322 TTTAAACTAA
*
20847332 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
* *
20847345 ACTTCTCAAAAAC
1 ACTTTTCAAAAGC
* *
20847358 ACTTTTCCAGAGC
1 ACTTTTCAAAAGC
*
20847371 ACTTTTCAAAAAC
1 ACTTTTCAAAAGC
20847384 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
20847397 A
1 A
20847398 ATGAAGAACT
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:20847364 original size:26 final size:26
Alignment explanation
Indices: 20847332--20847397 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
20847322 TTTAAACTAA
*
20847332 ACTTTTCAAAAGTACTTCTCAAAAAC
1 ACTTTTCAAAAGCACTTCTCAAAAAC
* * *
20847358 ACTTTTCCAGAGCACTTTTCAAAAAC
1 ACTTTTCAAAAGCACTTCTCAAAAAC
20847384 ACTTTTCAAAAGCA
1 ACTTTTCAAAAGCA
20847398 ATGAAGAACT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.30
Consensus pattern (26 bp):
ACTTTTCAAAAGCACTTCTCAAAAAC
Found at i:20856577 original size:51 final size:50
Alignment explanation
Indices: 20856458--20856590 Score: 160
Period size: 50 Copynumber: 2.6 Consensus size: 50
20856448 TAAGTGATGG
* * *
20856458 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGGATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGGATGATAGA
* * * * * *
20856508 TCGCATGTGTAGTACTATGTACAGTCTACTATGCGTACC-GGATAGTTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGGAT-G-ATAGA
20856559 TCACGTGTGTAGTACTATGTGCAGGCTACTAT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTAT
20856591 ATGTATTGAA
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
49 4 0.06
50 34 0.50
51 30 0.44
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.32
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGGATGATAGA
Found at i:20856702 original size:45 final size:45
Alignment explanation
Indices: 20856651--20856738 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
20856641 TGTGAACCGA
* * *
20856651 ACATCATTGATTAGTAAAGTGGTTGCTATGTGTTGATTCCACCAG
1 ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCAG
*
20856696 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
1 ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACC
20856739 GAGTATCTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (45 bp):
ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCAG
Found at i:20859285 original size:47 final size:47
Alignment explanation
Indices: 20859217--20859338 Score: 122
Period size: 47 Copynumber: 2.6 Consensus size: 47
20859207 ATTGACGAAA
* * * *
20859217 AAGACCATAG-TTGGACCATGGCAAC-ATGTGATATGTGATTTCCGTAT
1 AAGACCATAGCTGGGA-TATGGCAACAATGTGATATGTG-CTACCGTAT
* * * *
20859264 AAGACCATATCTGGGATATGGCATCAATGTGATATGTGCTACTGTGT
1 AAGACCATAGCTGGGATATGGCAACAATGTGATATGTGCTACCGTAT
* *
20859311 AAGACCATAGCTGGGCTATGGCATCAAT
1 AAGACCATAGCTGGGATATGGCAACAAT
20859339 ATGTAAATAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
47 47 0.75
48 16 0.25
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (47 bp):
AAGACCATAGCTGGGATATGGCAACAATGTGATATGTGCTACCGTAT
Found at i:20862285 original size:51 final size:50
Alignment explanation
Indices: 20862151--20862348 Score: 238
Period size: 51 Copynumber: 3.9 Consensus size: 50
20862141 AGTGAAAGTG
* *
20862151 ATGGTCCCGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAT-G-
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAATAGT
* * *
20862200 ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGT
* * * * *
20862251 TTCGATCACTTGTGTAGTACTATGTGCAGACTACTACGTGTATCGAATAGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGT
* *
20862302 AATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCGAA
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAA
20862349 CATCATTGAT
Statistics
Matches: 125, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 6 0.05
50 38 0.30
51 80 0.64
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGT
Found at i:20862347 original size:102 final size:101
Alignment explanation
Indices: 20862160--20862348 Score: 292
Period size: 102 Copynumber: 1.9 Consensus size: 101
20862150 GATGGTCCCG
* *
20862160 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTACTATGT
1 TGTGTAGTACTATGTGCAGACTACTACGTGTACCAGAATGATAGGTCACATGTGTAGTACTATGT
*
20862225 GCAGGCTACTATGCGTACCGAATAGTTTCGATCACT
66 GCAGGCTACTATGCGAACCGAATAGTTTCGATCACT
*
20862261 TGTGTAGTACTATGTGCAGACTACTACGTGTATC-GAAT-AGTAATGGTCACATGTGTAGTACTA
1 TGTGTAGTACTATGTGCAGACTACTACGTGTACCAGAATGA-T-A-GGTCACATGTGTAGTACTA
*
20862324 TGTGCAGGCTACTATGTGAACCGAA
63 TGTGCAGGCTACTATGCGAACCGAA
20862349 CATCATTGAT
Statistics
Matches: 80, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
99 1 0.01
100 5 0.06
101 33 0.41
102 41 0.51
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (101 bp):
TGTGTAGTACTATGTGCAGACTACTACGTGTACCAGAATGATAGGTCACATGTGTAGTACTATGT
GCAGGCTACTATGCGAACCGAATAGTTTCGATCACT
Found at i:20862399 original size:45 final size:45
Alignment explanation
Indices: 20862343--20862437 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 45
20862333 TACTATGTGA
* * * *
20862343 ACCGAACATCATTGATTAGTAAAGTGGTTGCTATGTGTTGATTCC
1 ACCGGACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
*
20862388 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGGACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
20862433 ACCGG
1 ACCGG
20862438 GTATCTGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (45 bp):
ACCGGACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
Found at i:20863070 original size:13 final size:13
Alignment explanation
Indices: 20863052--20863081 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
20863042 CTGAAAATTT
20863052 TATGGTAAGAAGA
1 TATGGTAAGAAGA
20863065 TATGGTAAGAAGA
1 TATGGTAAGAAGA
20863078 TATG
1 TATG
20863082 TAGATCAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (13 bp):
TATGGTAAGAAGA
Found at i:20881404 original size:35 final size:35
Alignment explanation
Indices: 20881359--20881432 Score: 98
Period size: 35 Copynumber: 2.1 Consensus size: 35
20881349 AAAAGTATGG
* *
20881359 ATTTGTTATCGATA-TGTTTTTTCAAGTATCGAA-AA
1 ATTTGGTATCGATACT-TTTTGTCAAGTATC-AATAA
20881394 ATTTGGTATCGATACTTTTTGTCAAGTATCAATAA
1 ATTTGGTATCGATACTTTTTGTCAAGTATCAATAA
20881429 ATTT
1 ATTT
20881433 TGTTGAGTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 2 0.06
35 32 0.91
36 1 0.03
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (35 bp):
ATTTGGTATCGATACTTTTTGTCAAGTATCAATAA
Found at i:20881433 original size:20 final size:20
Alignment explanation
Indices: 20881410--20881447 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
20881400 TATCGATACT
20881410 TTTTGTCAAGTATCAATAAA
1 TTTTGTCAAGTATCAATAAA
**
20881430 TTTTGTTGAGTATCAATA
1 TTTTGTCAAGTATCAATA
20881448 GGTTCACAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.45
Consensus pattern (20 bp):
TTTTGTCAAGTATCAATAAA
Found at i:20883418 original size:41 final size:41
Alignment explanation
Indices: 20883244--20883427 Score: 215
Period size: 41 Copynumber: 4.5 Consensus size: 41
20883234 AATTATTCCA
* *
20883244 TGAATTGCACATATGTACCCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATATGTGCCCCTGTTTGTACTTCGATACCCC
* * * * * *
20883285 TAAATTACACTTTTGTGCCCCTGTTTGTACTTCAATACCAC
1 TGAATTGCACATATGTGCCCCTGTTTGTACTTCGATACCCC
* * *
20883326 TGAATTTCATATATGTGCCCCTGTTTGTACTTCGAAACCCC
1 TGAATTGCACATATGTGCCCCTGTTTGTACTTCGATACCCC
* * * *
20883367 TAAATTGCACATACGTGCCCCTGTTTGTACTTTGATACCCT
1 TGAATTGCACATATGTGCCCCTGTTTGTACTTCGATACCCC
* *
20883408 TGAATAGCACATACGTGCCC
1 TGAATTGCACATATGTGCCC
20883428 TATTTACACT
Statistics
Matches: 118, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 118 1.00
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATATGTGCCCCTGTTTGTACTTCGATACCCC
Found at i:20887147 original size:29 final size:30
Alignment explanation
Indices: 20887099--20887157 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
20887089 GGATTCTATC
20887099 AAATAAAAATTTCATATATAAAATTACACA
1 AAATAAAAATTTCATATATAAAATTACACA
* *
20887129 AAATCAAAATTT-ATGTATAAAATTACACA
1 AAATAAAAATTTCATATATAAAATTACACA
20887158 TGACACCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.31
Consensus pattern (30 bp):
AAATAAAAATTTCATATATAAAATTACACA
Found at i:20889907 original size:6 final size:6
Alignment explanation
Indices: 20889896--20889920 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
20889886 TGGCGACTCA
20889896 CGTTTT CGTTTT CGTTTT CGTTTT C
1 CGTTTT CGTTTT CGTTTT CGTTTT C
20889921 AAAATCCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.20, G:0.16, T:0.64
Consensus pattern (6 bp):
CGTTTT
Found at i:20898491 original size:50 final size:50
Alignment explanation
Indices: 20898361--20898607 Score: 219
Period size: 50 Copynumber: 4.8 Consensus size: 50
20898351 GTTAATAACA
* ** * * *
20898361 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * * * ** **
20898410 TGCCAATGTCATATCCCAAATATGACCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * *
20898460 TGCCCATGCCATGTCCCAGACATTGTCTTACAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
20898510 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCATTGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* *
20898566 TGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
20898608 TTACCCAAAG
Statistics
Matches: 157, Mismatches: 33, Indels: 9
0.79 0.17 0.05
Matches are distributed among these distances:
48 1 0.01
49 35 0.22
50 79 0.50
53 2 0.01
56 40 0.25
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:20905127 original size:49 final size:49
Alignment explanation
Indices: 20905055--20905192 Score: 145
Period size: 50 Copynumber: 2.8 Consensus size: 49
20905045 ACATGGCAAA
* * * *
20905055 GCCATGTCCTAGACATGGTCTTACATGGGATGTT-TCTTGTAC-TGCCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGTGCCAAT
* * *
20905104 GCCATATCCCAGATATGGCCTTACATGGGAGTTCTCATATCGGTGCCCAT
1 GCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATC-GTGCCAAT
* **
20905154 GCCATATCCCAAACATGGTCTTACATGGGACCTCTCATA
1 GCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATA
20905193 ACCTCAGTGA
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
48 4 0.05
49 30 0.41
50 40 0.54
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (49 bp):
GCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATCGTGCCAAT
Found at i:20910077 original size:45 final size:45
Alignment explanation
Indices: 20910028--20910296 Score: 423
Period size: 45 Copynumber: 6.0 Consensus size: 45
20910018 GAGTAGGTTG
*
20910028 AAGATAGCAGATCTTATCTTCCTGTATTGGCAGCGAAGTAGATCA
1 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
* * *
20910073 AAGATAGCAGGTCTTGTCTTCCTATATTGGTAGCGAAGTAGATCA
1 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
* *
20910118 AAGATAGCATG-TCTTATCTTCCTGTATTGGCAGCGAAGTAGATCG
1 AAGATAGCA-GATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
* *
20910163 AAGATAGCAGGTCTTGTCTTCCAGTATTGGCAGCGAAGTAGATCA
1 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
* *
20910208 AAGATAGCAGATCTTGTCTTCTTGTATTGGCAGCAAAGTAGATCA
1 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
*
20910253 AAGATAGCAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATC
1 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
20910297 GAATATACCA
Statistics
Matches: 204, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
44 1 0.00
45 202 0.99
46 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (45 bp):
AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
Found at i:20911851 original size:44 final size:44
Alignment explanation
Indices: 20911763--20912031 Score: 218
Period size: 45 Copynumber: 6.0 Consensus size: 44
20911753 ATTCCGTTTT
* * * * * *
20911763 AATCTGCTCTACTGTAACTTTAGGGAGATAGGATTAGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTC
* *
20911807 AATTTGCCCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTC
* * *
20911851 AACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTGTTTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTG-GTATCTTC
* * * * **
20911896 AGTCTGCTCCATTGCAACTTCAAGGAGATAAGACTTGTTATGGT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGGTATCTTC
* ** * * **
20911940 AGATCTGCTCTACTATAACTTCAGAGAGATAAAATCTACTATCTTC
1 A-ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGGTATCTTC
* * * * *
20911986 AATCTACTCTACTGCAACCTCAGTGAGATAAGACTT-GTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGGTATCTTC
20912030 AA
1 AA
20912032 CTTGTTTTAC
Statistics
Matches: 179, Mismatches: 40, Indels: 12
0.77 0.17 0.05
Matches are distributed among these distances:
44 78 0.44
45 96 0.54
46 5 0.03
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTC
Found at i:20911861 original size:225 final size:227
Alignment explanation
Indices: 20911529--20911943 Score: 536
Period size: 225 Copynumber: 1.8 Consensus size: 227
20911519 GAGATTTGCG
* * *
20911529 GTTTTAGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGTCATGGTCTTCAATCTACTCCAT
1 GTTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGTCA-GGTCTTCAATCTACCCCAC
* * * * *
20911594 TGTAACTTCAGGGAGATAATTGGTTTATTTTTAACTTGCTCCACTGCAACTTTAGAGAGATAA-G
65 TGCAACTTCAGGGAGATAATTGG-TTATCTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGG
* * * **
20911658 TTTTGTTATCTTTAGTCTGTTCCACTGCAACTTCGGGGAGATAAGACATGTTATAGTAGATTTAA
129 TTGT-TTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACATGTTATAGTAGATTTAA
20911723 TCCAACCTCCTGCAAGTTTAGAGGTATAGAATTCC
193 TCCAACCTCCTGCAAGTTTAGAGGTATAGAATTCC
* * * * *
20911758 GTTTTAATCTGCTCTACTGTAACTTTAGGGAGATAGGA-TTAGT-A-G-CTTCAATTTGCCCCAC
1 GTTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTT-GTCAGGTCTTCAATCTACCCCAC
*
20911819 TGCAACTTCAGGGAGATAAGATTGG-TATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG
65 TGCAACTTCAGGGAGAT-A-ATTGGTTATCTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAG
* * *
20911883 GTTGTTTATCTTCAGTCTGCTCCATTGCAACTTCAAGGAGATAAGACTTGTTATGGTAGAT
128 GTTGTTTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACATGTTATAGTAGAT
20911944 CTGCTCTACT
Statistics
Matches: 160, Mismatches: 22, Indels: 12
0.82 0.11 0.06
Matches are distributed among these distances:
225 110 0.69
226 6 0.04
227 5 0.03
228 3 0.02
229 36 0.22
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (227 bp):
GTTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGTCAGGTCTTCAATCTACCCCACT
GCAACTTCAGGGAGATAATTGGTTATCTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTT
GTTTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACATGTTATAGTAGATTTAATCC
AACCTCCTGCAAGTTTAGAGGTATAGAATTCC
Found at i:20912268 original size:81 final size:81
Alignment explanation
Indices: 20912176--20912327 Score: 250
Period size: 81 Copynumber: 1.9 Consensus size: 81
20912166 AGATTCGCTA
* *
20912176 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTGCAATCTTCAACCTACTCCACTGCT
1 TCTTCGATCTGCTCCACTACTACTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCT
20912241 ACTCAGGGATTCACCG
66 ACTCAGGGATTCACCG
* * *
20912257 TCTTTGATCTGCTTCACTACTACTTTGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCT
1 TCTTCGATCTGCTCCACTACTACTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCT
*
20912322 GCTCAG
66 ACTCAG
20912328 AGAGATAAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (81 bp):
TCTTCGATCTGCTCCACTACTACTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCT
ACTCAGGGATTCACCG
Done.