Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62178258
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 912357 characters in sequence are not A, C, G, or T
File 78 of 198
Found at i:24499916 original size:21 final size:21
Alignment explanation
Indices: 24499887--24499959 Score: 57
Period size: 20 Copynumber: 3.5 Consensus size: 21
24499877 TCTCTCTCGC
*
24499887 TTTCCTTTTTGCTTTTTTCA-T
1 TTTCATTTTT-CTTTTTTCACT
24499908 TTTCA-TTTTCTTCTTTTTCACT
1 TTTCATTTTTC-T-TTTTTCACT
*
24499930 TTT-ATTTTTCTTTTCTC-CTT
1 TTTCATTTTTCTTTTTTCAC-T
24499950 TTTC-TTTTTC
1 TTTCATTTTTC
24499960 CTCACTTGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
19 2 0.05
20 20 0.45
21 13 0.30
22 9 0.20
ACGTcount: A:0.05, C:0.21, G:0.01, T:0.73
Consensus pattern (21 bp):
TTTCATTTTTCTTTTTTCACT
Found at i:24499936 original size:27 final size:28
Alignment explanation
Indices: 24499901--24499953 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
24499891 CTTTTTGCTT
*
24499901 TTTTCA-TTTTCATTTTCTTCTTTTTCAC
1 TTTTCATTTTTC-TTTTCTCCTTTTTCAC
24499929 TTTT-ATTTTTCTTTTCTCCTTTTTC
1 TTTTCATTTTTCTTTTCTCCTTTTTC
24499954 TTTTTCCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.08, C:0.21, G:0.00, T:0.72
Consensus pattern (28 bp):
TTTTCATTTTTCTTTTCTCCTTTTTCAC
Found at i:24499951 original size:14 final size:13
Alignment explanation
Indices: 24499887--24499961 Score: 53
Period size: 14 Copynumber: 5.5 Consensus size: 13
24499877 TCTCTCTCGC
24499887 TTTCCTTTTTGCTT
1 TTTCCTTTTT-CTT
* *
24499901 TTTTCATTTTCATT
1 TTTCCTTTTTC-TT
* *
24499915 TTCTTCTTTTTCACT
1 TT-TCCTTTTTC-TT
*
24499930 TTT-ATTTTTCTT
1 TTTCCTTTTTCTT
24499942 TTCTCCTTTTTCTT
1 TT-TCCTTTTTCTT
24499956 TTTCCT
1 TTTCCT
24499962 CACTTGTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
12 3 0.06
13 12 0.24
14 23 0.46
15 12 0.24
ACGTcount: A:0.05, C:0.21, G:0.01, T:0.72
Consensus pattern (13 bp):
TTTCCTTTTTCTT
Found at i:24499957 original size:19 final size:19
Alignment explanation
Indices: 24499900--24499943 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 19
24499890 CCTTTTTGCT
24499900 TTTTTCA-TTTTCATTTTCTTC
1 TTTTTCACTTTT-A-TTT-TTC
24499921 TTTTTCACTTTTATTTTTC
1 TTTTTCACTTTTATTTTTC
24499940 TTTT
1 TTTT
24499944 CTCCTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.32
20 3 0.14
21 8 0.36
22 4 0.18
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTCACTTTTATTTTTC
Found at i:24500861 original size:28 final size:30
Alignment explanation
Indices: 24500810--24500865 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
24500800 GTGATTAAAT
24500810 AAAATTGACACAAGCAGAATTTAAAAGAAA
1 AAAATTGACACAAGCAGAATTTAAAAGAAA
24500840 AAAATTGACAGCAAG-A-AA-TTAAAAGA
1 AAAATTGACA-CAAGCAGAATTTAAAAGA
24500866 TAAGTCCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 8 0.32
29 2 0.08
30 11 0.44
31 4 0.16
ACGTcount: A:0.61, C:0.09, G:0.14, T:0.16
Consensus pattern (30 bp):
AAAATTGACACAAGCAGAATTTAAAAGAAA
Found at i:24505294 original size:30 final size:28
Alignment explanation
Indices: 24505260--24505315 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 28
24505250 GTGATTAAAT
24505260 AAAATCGACA-CAAGCAGAATTTAAAAGAAA
1 AAAATCGACAGCAAG-A-AA-TTAAAAGAAA
*
24505290 AAAATTGACAGCAAGAAATTAAAAGA
1 AAAATCGACAGCAAGAAATTAAAAGA
24505316 TAAGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 8 0.33
29 2 0.08
30 10 0.42
31 4 0.17
ACGTcount: A:0.61, C:0.11, G:0.14, T:0.14
Consensus pattern (28 bp):
AAAATCGACAGCAAGAAATTAAAAGAAA
Found at i:24512775 original size:23 final size:23
Alignment explanation
Indices: 24512743--24512854 Score: 125
Period size: 23 Copynumber: 4.9 Consensus size: 23
24512733 CTTTTTGAAC
* *
24512743 CATTAACATTTCGTACCAAATCG
1 CATTACCATTTCGTACCAAATCA
* *
24512766 TATTACCATTTCGAACCAAATCA
1 CATTACCATTTCGTACCAAATCA
* * *
24512789 CCTTACCAATTCGTACCAAATCG
1 CATTACCATTTCGTACCAAATCA
* * *
24512812 TATTACCATTTTGAACCAAATCA
1 CATTACCATTTCGTACCAAATCA
*
24512835 CATTACCATTTCGTAACAAA
1 CATTACCATTTCGTACCAAA
24512855 CCCAAAACCG
Statistics
Matches: 70, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 70 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (23 bp):
CATTACCATTTCGTACCAAATCA
Found at i:24512819 original size:46 final size:46
Alignment explanation
Indices: 24512743--24512854 Score: 170
Period size: 46 Copynumber: 2.4 Consensus size: 46
24512733 CTTTTTGAAC
* *
24512743 CATTAACATTTCGTACCAAATCGTATTACCATTTCGAACCAAATCA
1 CATTACCAATTCGTACCAAATCGTATTACCATTTCGAACCAAATCA
* *
24512789 CCTTACCAATTCGTACCAAATCGTATTACCATTTTGAACCAAATCA
1 CATTACCAATTCGTACCAAATCGTATTACCATTTCGAACCAAATCA
* *
24512835 CATTACCATTTCGTAACAAA
1 CATTACCAATTCGTACCAAA
24512855 CCCAAAACCG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (46 bp):
CATTACCAATTCGTACCAAATCGTATTACCATTTCGAACCAAATCA
Found at i:24525938 original size:655 final size:655
Alignment explanation
Indices: 24521330--24541816 Score: 23656
Period size: 655 Copynumber: 31.3 Consensus size: 655
24521320 AGAAAACGTT
* * * * *
24521330 TTCTTGCTACCAAGAAGGGTGCCGATTAGCTTCTTGAA-GATTGAA-AAGGGCTGGAAACGCAAC
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATG-TTGAAGAA-GGCTGGAAACGCAAC
* * * * * * * *
24521393 AAGAACGA-ATAAAATAAGTTA-ATCAATG-AATCGGCACAAGCAAAAAATT-TAAAGAGTAATA
64 AAGAA--ATCTTAAACAAGTTAGAT-AATGAAATCGACACAAGC-AGAAATTAAAAAGAG-ATTG
* * * * *
24521454 AATAACAAGAAAAATAAAGA-ACAGTCCTAAGAAGCTTTGAAATCCTGAAAGATTTCACAACTCT
124 AACAACAAG-AAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTC-
*
24521518 C-TTCAAACGGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGACGATGGCT
187 CATTCAAACGGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCT
* **
24521582 ACCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAAAACTCAAGAGAAAATTCTTGGAGAAC
252 CCCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAAC
24521647 TCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAA
317 TCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAA
*
24521712 GGGTGGCTGGCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACT-
382 CGGTGGCTGGCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTA
*
24521776 AAAAAAAAA-CTAA-TTTTTTTGACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTC
447 AAAAAAAAACCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTC
* *
24521839 TTGGATTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCATGAAAACAAGA
512 TTGGACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGA
*
24521904 AAGTGAATCTTGATTTTCCTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGAT
577 AAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGAT
*
24521969 GAATTAATAATCGA
642 GAATTAATGATCGA
24521983 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* *
24522048 GAAATCTTAAACAAGTTAGAGAATGAAATCGACACAAGAAGAAATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
*
24522113 AGAAAATAAAAATAAAGTCCTAAGATGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
*
24522178 GGCGT-TAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGTTGAAGATGGCTCCCACAAT
196 GGC-TCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAAT
*
24522242 CTAAAAGATTGTTAAAACTACTTCTAAAGAAACCTCAAGAGAAAATTCTTGGAGAACTCAAAGAG
260 CTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAG
*
24522307 AATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAGGGTGGCT
325 AATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCT
*
24522372 GGTCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACT-AAAAAAAA
390 GGCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAA
* *
24522436 A-CTAA-TTTTTTTGACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGATTG
455 ACCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTG
*
24522499 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCATGAAAACAAGAAAGTGAAT
520 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAAT
*
24522564 CTTGATTTTCCTTTTCCTTCGTATACGCATCT-AGGCCTTTGTGACTCATATCAGATGAATTAAT
585 CTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
24522628 GATCGA
650 GATCGA
*
24522634 TTCGTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* * * *
24522699 GAAATCTTAAACAAGTTAGATAATGAAATTGACACAAGCAGAAATTAAAAAGTGAGTGAACAGCA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
*
24522764 AGAAAATAAAGATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
* * * * *
24522829 AGCTCTAATCTCCCCTCAAATGAAGAATATTTGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
* * *
24522894 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCCCAAGAGAAAGTTCTTGGGGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
*
24522959 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAGGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
*
24523024 GCCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACT-AAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
*
24523088 CCTATTTTTATTTTTACTTTAAA-GGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTG
456 CCTAATTTT-TTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTG
* *
24523152 AATTTTTACATAGAAAATTTCATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAAT
520 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAAT
* *
24523217 CTTGATTTTCTATTTCCTTTGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
585 CTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
* *
24523282 AATCGG
650 GATCGA
*
24523288 TTCTTGCTGCCAAGAGGGGTGCCGATCAATTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
** *
24523353 GAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACT
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
* * * *
24523418 TGAAAATAAAAATAAAGTCCTCAGATGCCTTGAAATCCCGAAAGATTTCAGAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
*
24523483 GGCTCTAATCTCCCCTCCGATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
24523548 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
*
24523613 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTTAAGGTGTAATGTATAACGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
* * *
24523678 GCGAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCGAATAGGTAAACT--AAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* * *
24523741 CCTAATTTTTTTTTACTTTAAAAGGGAAATTAGGCCAAGGACTTTAAATGGGCCTCTTGGACTAA
456 CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGA
24523806 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
521 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
* * * *
24523871 TTGATTTTATTTTTCCTTTGTATACACATCTAAGGCCTTTGTGACTCATATCAGATGAATT-ATA
586 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
24523935 ATCGA
651 ATCGA
* *
24523940 TTCTTGCTACCAAGAGGGGTGCCGATCAGTTTCTTTAATGTCGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
*
24524005 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACT
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
*
24524070 TGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
* * * * *
24524135 GGCTCTAATCTCCCCTCAAATCAAGAATATTTGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
* * * *
24524200 TAAAAGATTGCTAAAACTTCTTCTAAAGAATCCCCAAGAGAAAGTTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
* *
24524265 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAGGGTTGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
* *
24524330 GCCAAGACATACATATAGGCCTTCGAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* *
24524395 CCCTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGAC
456 -CCTA-ATTT-TTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGAC
* *
24524460 TGAATTTTTACATAGAAAAATTATTGATCAGATAAATCTTGATTTTCTTGAAAACAAGAAAGTGA
518 TGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGA
*
24524525 ATCTTGATTTTCTTTTTCCTTTGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTA
583 ATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTA
*
24524590 ATAATCGA
648 ATGATCGA
* *
24524598 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATCTTGAAGAAGGCTGGAAACGCAAGAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
**
24524663 GAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
*
24524728 AGAAAATAAAAATAAAGTCCTAAGATGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
*
24524793 GGCGT-TAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGTTGAAGA-GAAG-TCGGACC
196 GGC-TCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATG--GCTC---CC
*
24524855 ACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAAACCTCAAGAGAAAATTCTTGGAGAACTCA
255 ACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCA
* *
24524920 AACAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTTAAGGTGTAATGTATAACGG
320 AAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGG
* *
24524985 TGGCTGGCTAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGGAAACTAAAA
385 TGGCTGGCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAA
24525050 AAAAAACCTAATTTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTT
450 AAAAAACCTAA-TTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTT
*
24525115 GGACAGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAA
514 GGACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAA
*
24525180 GTGAATCTTGATTTTCTTTTTCCTTTGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGA
579 GTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGA
*
24525245 ATTAATAATCGA
644 ATTAATGATCGA
*
24525257 TTTTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* ** *
24525322 GAATTCTTAAACAAGTTAGATAATTTAATTGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
*
24525387 AGAAAATAAAAATAAAGTCCTAAGATGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
* *
24525452 GGCTCTAATGTCCCCTCCAATGAAGAACAATGCCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
*
24525517 TAAAAGATTGTTAAAACTACTTCTAAAGAAACCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
* * *
24525582 ATTTTCACTCACAAACAAATCTAAAAATTTAAAGTAATTTAAGGTGTAATGTATAACGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
* * * *
24525647 GCCAACCCATACATATAGGCGTTCTATCTATTTTCCTAGTCCTAATAGGGAAACTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
*
24525712 CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACAGA
456 CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGA
*
24525777 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAAAC
521 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
24525842 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
586 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
24525907 ATCGA
651 ATCGA
*
24525912 TTCGTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* *
24525977 GAAATCTTAAACAAGTTAGAGAATGAAATCGACACAAGAAGAAATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
* *
24526042 AGAAAATAAAGATAAAGTCCTAAGAAGCTTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
* * * * * * *
24526107 AGCTCTAACCTCCCCTCAAATCAAGAATAATTGCAAGAAGAAGGCTGAAGATGGCTCCCACATTC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
*
24526172 TAAAAGATTGTTAAAACTACTTCTAAAGAATCC-CAAGAGAAAGTTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
* * *
24526236 ATTTTCACTCACAAACAAATCTAAAAATTTAATGTAATTCAAGGTGTAAAGTATAAGGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
* *
24526301 GCCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAAGAAAACT-AAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* * *
24526365 CCTATTTTTGTTTTTTTACTTTAAAAGGGAAATTAGGCCAAGGACTTTAAATGGGCCTCTTGGAC
456 CCTA--ATT-TTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGAC
* *
24526430 TGAACTTTTACATGGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGA
518 TGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGA
*
24526495 ATCTTGATTTTCTTTTTCCTTTGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTA
583 ATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTA
*
24526560 ATAATCGA
648 ATGATCGA
24526568 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
** *
24526633 GAAATCTTAAACAAGTTAGATAATTTAATCGAAACAAGCAGAAATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
*
24526698 AGAAAATAAAAATAAAGTCCTAAGATGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
* *
24526763 GGCTCTAATCTCCCCTCCAATGAAGAACAATGACAAGAAGAAGGCTGAAGATGGCTCCAACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
* * *
24526828 TAAAAGATTGTTAAAACTACTCCTAAAGAAACCTCATGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
*
24526893 ATTTTCACTCACAAACTAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
* *
24526958 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGGAAAGTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
24527023 CCTAA-TTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGA
456 CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGA
*
24527087 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAATAAGAAAGTGAATC
521 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
* *
24527152 TTGATTTTCTTTTTCCATCGTATACGCATCTAAGGCCATTGTGACTCATATCAGATGAATTAATG
586 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
24527217 ATCGA
651 ATCGA
* * *
24527222 TTCGTGCTGCCAAAAGGGGTACCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
24527287 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTG---AAC-
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
* *
24527348 A-AAAA-GAAAATAAAGCCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
24527411 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
* *
24527476 TAAAAGATTGTTAAAATTACTTCTAAAGAAACCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
* * *
24527541 ATTTTCACTCACAAACTAATCTAAAAATTTAATGTAATTCAAGGTGTAATATATAACGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
** *
24527606 GCCAAGCTGTACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGGAAACTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
*
24527671 CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACAGA
456 CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGA
*
24527736 ATTTTTACATACAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
521 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
24527801 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
586 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
24527866 ATCGA
651 ATCGA
*
24527871 TTCGTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* * *
24527936 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGTGAGTGAACAGCA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
* * * *
24528001 AGAAAATAAAGATCAAGTCCTAAGAAGTCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAG
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
* * * * * *****************
24528066 GGCTCTAATCTCCCTTCAAATCAAGAATAATTGCAAGAAGAAGGCT--NNNNNNNNNNNNNNNNN
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
*****************************************************************
24528129 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
*****************************************************************
24528194 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
*****************************************************************
24528259 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
****** *
24528324 NNNNNNTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCCCTTGGACTGA
456 CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGA
* * *
24528389 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTATTCAAATCAAGAAAGTGAATC
521 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
* * *
24528454 TTGATTTTCTTTTTCCTACGTATACGCATCTAAGGCCTTTGTCACTCATATCAGATGAAATAATG
586 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
24528519 ATCGA
651 ATCGA
* * *
24528524 TTCCTGCTGCCAACAGGGGTAG-CAATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACA
1 TTCTTGCTGCCAAGAGGGGT-GCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACA
24528588 AGAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAAC
65 AGAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAAC
24528653 AAG------AAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAA
130 AAGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAA
24528712 CGGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAAT
195 CGGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAAT
24528777 CTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAG
260 CTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAG
* *
24528842 AATTTTCACTCACAAACAAATCTAAAAATTTACTGTAATTCAAGGTGTAATGTATAACGGTGGCT
325 AATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCT
24528907 GGCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAA
390 GGCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACT-AAAAAAAA
* *
24528972 AACCTAATTTTTTTTTACTTTAAAGGGGAAATTTGGCCAAGGACTTTAAATGGGCCTCTTGGACA
454 AACCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACT
*
24529037 AAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAA
519 GAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAA
24529102 TCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAA
584 TCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAA
*
24529167 TGTTCGA
649 TGATCGA
*
24529174 TTCGTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* * *
24529239 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGTGAGTGAACAGCA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
**** * ** * ** *** ** * ********************
24529304 AGAAAATAAACCCGCACGTTGTCAGACAGGTATTG-TGGCTGGTANNNNNNNNNNNNNNNNNNNN
131 AGAAAATAAA-AATAAAGTCCTAAGA-A-GCCTTGAAATCCCGAAAGATTTCACAACTCCATTCA
*****************************************************************
24529368 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
193 AACGGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACA
******************************************* * *
24529433 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTTCTTAGAGAACTCAAAG
258 ATCTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAG
*
24529498 AGAATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAGGGTGG
323 AGAATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGG
*
24529563 CTGGCCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACT-AAAAAA
388 CTGGCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAA
* *
24529627 AAACCTATTTTTATTTTTTACTTTAAAAGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGG
453 AAACCTA-ATTT-TTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGG
* * *
24529692 ACTGAATTTTTACATAGAAAATTTCATGATCAAATGAATCTTGATTTTCTTGAAAACAAGAAAGT
516 ACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGT
24529757 GAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAAT
581 GAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAAT
24529822 TAATGATCGA
646 TAATGATCGA
* * * ******************
24529832 TTCCTGCTGCCAAAAGGGGTACCGATCAGTTTCTTTAATG-T-----NNNNNNNNNNNNNNNNNN
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
*****************************************************************
24529891 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
***************************************************************
24529956 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
24530021 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGG-TGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
*
24530085 TAAAAGATTGTTAATACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
** *
24530150 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAACATATAACGATGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
* *
24530215 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCGTAACAGGAAAACTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* * *
24530280 CCTAATTTTTTTTGACTTTAAAGGGGAAATTCGGCCAAGGATTTTAAATGGGCCTCTTGGACTTA
456 CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGA
24530345 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
521 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
* * *
24530410 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTAACTAATATCAGATAAATTAATG
586 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
24530475 ATCGA
651 ATCGA
* *
24530480 TTCGTGCTGCCAAAAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* ** * * *
24530545 GAAATCTTAAACAAGTTAGATAATGAAATTGACACAAGCAGAAATTAAAAATTGAGTGAATAGCA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
*
24530610 AGAAAATAAAGATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
*
24530675 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATTGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
* *
24530740 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCCCAAGAGAAAGTTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
*
24530805 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAGGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
*
24530870 GCCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACT-AAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* * * *
24530934 CCTATTTTTGTTTTTTAGTTTAAAAGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACA
456 CCTA-ATTT-TTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACT
*
24530999 GAATTTTTACATACAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAA
519 GAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAA
24531064 TCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAA
584 TCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAA
*
24531129 TGATCTA
649 TGATCGA
24531136 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* * * * *
24531201 GAAATCTTAAACAAGTTAGATAATGAAATCGAAACAGGCAGAAATTAAAAAGTGAGTGAACAGCA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
* * * * *
24531266 AGAAAATAAAGATCAAGTCCTAAGAAGTCTTGAAATCCCGAACGATTTCACAACTCCATTCAAAG
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
* * * * *
24531331 GGCACTAATCTCCCCTCAAATCAAGAATAATTGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
* *
24531396 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCCCAAGAGAAAGTTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
24531461 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAA-GCGTGGCT
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACG-GTGGCT
* * *
24531525 GGCCAAGACATACATATAGACCTTTCTAACTATTTTCCTTGTCCTAATAGGAAAACTAAAAAAAA
390 GGCCAAGCCATACATATAGGCC-TTCTAACTATTTTCCTAGTCCTAATAGGAAAACT-AAAAAAA
* *
24531590 AAACCTATTTTTGTTTTTTACTTTAAAAAGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTG
453 AAACCTA-ATTT-TTTTTTACTTT-AAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTG
24531655 GACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAG
515 GACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAG
*
24531720 TGAATCTTGATTTTCTTTTTCCTTTGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAA
580 TGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAA
*
24531785 TTAATAATCGA
645 TTAATGATCGA
24531796 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
24531861 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
*
24531926 AGAAAATAAAAATAAAGTCCTAAGATGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
*
24531991 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGGAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
* *
24532056 TAAAAGATTGTTAAAACTACTTCTGAAGAAACCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
*
24532121 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTTAAGGTGTAATGTATAACGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
*
24532186 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGGAAACTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
*
24532251 CCTAA-TTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACAGA
456 CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGA
********************************
24532315 ATTTTTACATAGAAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
521 ATTTTTACATAGAAAAATT--------------AATGATCAGATGAATCTTGATTTTCTTGAAAA
******************************************************
24532380 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACTCATAT
572 CAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATAT
24532445 CAGATGAATTAATGATCGA
637 CAGATGAATTAATGATCGA
** * * *
24532464 TTCGAGCAGCCAAGAGGGGCGCCGTTCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* *
24532529 GAAATTTTAAACAAGTTAGATAATGAAATCGACACAAGTAGAAATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
* *
24532594 AG------AAAATAAAGTCCTAAGAAGCCTTGAAATCCCAAAAGATTTCACAACTCCATTTAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
24532653 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGG-TGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
24532717 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
*
24532782 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATATATAACGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
* *
24532847 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCGTACTAGGAAAACTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* *
24532912 CCTAATTTTTTTTTACTTTAATGGGGAAATTCGGCCAAGGATTTTAAATGGGCCTCTTGGACTGA
456 CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGA
*
24532977 ATTTTTATATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
521 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
* *
24533042 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCTTTTGTGACTCATATCAGATAAATTAATG
586 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
24533107 ATCGA
651 ATCGA
* *
24533112 TTCGTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGTTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* ** * *
24533177 GAAATCATAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAATTGAGTGAACAGCA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
* *
24533242 AGAAAATAAAGATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAG
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
* * * * * *
24533307 GGCTCTAATCTCCGCTCAAATCAACAATAATTGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
* *
24533372 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCCCAAGAGAAAGTTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
* *
24533437 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAGGGTGGTTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
* *
24533502 GCCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAAGAAAACT-AAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* *
24533566 CC-AATTTTTGTTTTTTTACTTTAAAAGGGAAATTAGGCCAAGGACTTTAAATGGGCCTCTTGGA
456 CCTAA---TT-TTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGA
* *
24533630 CAGAATTTTTACATTGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTG
517 CTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTG
* *
24533695 AATCTTGATTTTCTTTTTCCTTTGTATACGCATCTAAGGCCTTCGTGACTCATATCAGATGAATT
582 AATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATT
24533760 AATGATCGA
647 AATGATCGA
24533769 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
*
24533834 GAAATTTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
24533899 AG------AAAATAAAGTCCTAAGAAGCCTTTGAAATCCCGAAAAGATTTCACAACTCCATTCAA
131 AGAAAATAAAAATAAAGTCCTAAGAAGCC-TTGAAATCCCG-AAAGATTTCACAACTCCATTCAA
24533958 ACGGCTCTAATCTCCCCTCCAATGAAGGAACAATGGGCAAGAAGAAGG-TGAAGATGGCTCCCAC
194 ACGGCTCTAATCTCCCCTCCAATGAA-GAACAAT-GGCAAGAAGAAGGCTGAAGATGGCTCCCAC
*
24534022 AATCTAAAAGATTGTTAATACTACTTCTAAAGAAT-CTCAAGAGAAAATTCTTGGAGAACTCAAA
257 AATCTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAA
* * * **
24534086 GAGAATTTTCACTCCCAAACCAATCCTGAAAATTTAATGTAATTCAAGGGGTAACATATAACGGA
322 GAGAATTTTCACTCACAAACAAAT-CTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGG-
* ********************************************
24534151 TGGGTGGGCCAAGCCATACA-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
385 TGGCT-GGCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAA
*****************************************************************
24534215 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
449 AAAAAAACCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTT
*****************************************************************
24534280 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
514 GGACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAA
*****************************************************************
24534345 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
579 GTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGA
************
24534410 NNNNNNNNNNNN
644 ATTAATGATCGA
*****************************************************************
24534422 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
********************** ** * *
24534487 NNNNNNNNNNNNNNNNNNNNNNATGAAATCGACACAAGCAGAAATTAAAAATTGAGTGAACAGCA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
*
24534552 AG-AAAT-AAGAT-AAGT-CTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAG
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAA-
* * * * *
24534613 GGGCTCTAATCTCCCCTCAAATCAAGAATAATTGCAAGAAGAAGGCTGAAGATGGCTCCCACAAT
195 CGGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAAT
* *
24534678 CTAAAAGATTGTTAAAACTACTTCTAAAGAATCCCCAAGAGAAAGTTCTTGGAGAACTCAAAGAG
260 CTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAG
* *
24534743 AATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAGGGTGGTT
325 AATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCT
* * *
24534808 GGCCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAAGAAAAC--CAAAAAAA
390 GGCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAA
* *
24534871 ACC-AATTTTTGTTTTTTTACTTTAAAAGGGAAATTAGGCCAAGGACTTTAAATGGGCCTCTTGG
455 ACCTAA---TT-TTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGG
* *
24534935 ACAGAATTTTTACATACAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGT
516 ACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGT
*
24535000 GAATCTTGATTTTCTTTTTCCTTTGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAAT
581 GAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAAT
24535065 TAATGATCGA
646 TAATGATCGA
* * *
24535075 TTCTTGCTGCCAAGAGGGGTACTGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAAAGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
*
24535140 GAAATTTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
24535205 AG------AAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
24535264 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGC-GAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
24535328 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
* *
24535393 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATATATAACGATGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
* *
24535458 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCGTAACAGGAAAACT-AAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* * *
24535522 CCTATTTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGATTTTAAATGGACCTCTTGGACTGA
456 CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGA
24535587 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
521 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
*
24535652 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAAATAATG
586 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
24535717 ATCGA
651 ATCGA
* *
24535722 TTCTTGCTGCCAAGAGGGGTGCCAATCAGTTTCTTTAATGTTGAAGAAGGCTAG-AACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* **
24535786 CAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
24535851 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
*
24535916 GGCTCTAATCTACCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
24535981 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
* * *
24536046 ATTTTCACTCATAAACAAATCTGAAAATCTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTC
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
*
24536111 GCCAAGCCATACATATAGGCCTTCTAACTATTTTACTAGTCCTAATAGGAAAACTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* *
24536176 CCTAATTTTTTTTTTACTTTAACGGGGAAATTCGTCCAAGGACTTTAAATGGGCCTCTTGGACTG
456 CCTAA-TTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTG
* * *
24536241 AATTATTACATAGAAAAATTAATGATCAAATGAATCTTGATTTTCTTGAAAACAAGGAAGTGAAT
520 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAAT
24536306 CTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
585 CTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
24536371 GATCGA
650 GATCGA
24536377 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* ** * * *
24536442 GAATTCTTAAACAAGTTAGATAATTTAATCGACACAAGTAGAAAATAAACAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
24536507 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
*
24536572 GGCTCTGATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
24536637 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
*
24536702 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATATATAACGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
*
24536767 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCGTAATAGGAAAACTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* * * *
24536832 CCTAAGTTTTTTTTTACTTCAAAGGGAAAATTCAGCCAAGGATTTTAAATGGGCCTCTTGGACTG
456 CCTAA-TTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTG
*
24536897 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAATAAGAAAGTGAAT
520 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAAT
* *
24536962 CTTGATTTTCTTTGTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAGTTAAT
585 CTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
24537027 GATCGA
650 GATCGA
* *
24537033 TTCTTGCTGCCAAGAGGGGTGCCAATCAGTTTCTTTAATGTTGAAGAAGGCTAG-AACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* ** *
24537097 CAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGTAGAAATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
24537162 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
24537227 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
*
24537292 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAGGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
*
24537357 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGCCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
24537422 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACT-AAAAAAAAA
* * * * *
24537487 ACCTAATTTTTTTTTACTTTGAAGGGGAAATTCGTCCAAGGACTTAAAATCGGCCTGTTGGACTG
455 ACCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTG
*
24537552 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCCTGAAAACAAGAAAGTGAAT
520 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAAT
*
24537617 CTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCTTATCAGATGAATTAAT
585 CTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
24537682 GATCGA
650 GATCGA
* * *
24537688 TTCTTGCTGCCAAGAGGGGTGCTGATTAGTTTCTTTAATGTTGAAGAAGGCTGGAAAAGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
** * *
24537753 GAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGTAGATATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
* *
24537818 AG------AAAATAAAGTCCTAAGAAGCCTTGAAATCCCAAAAGATTTCACAACTCCATTTAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
* *
24537877 GGCTCTAATCTCCCCTCCAATGAATAACAATGGCAAGAAGAAGG-TGAAGATGGCTCCCATAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
*
24537941 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAAA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
* * *
24538006 ATTTTCACTCACAAACAAATCTAAAAATTTAATGTAATTCAAGGTGTAATATATAACGATGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
* * *
24538071 GCCAAGCCATACATATAGGCCTGCTAACTATTTTCCTAGTCGTAACAGGAAAACTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* *
24538136 CCTAATTTTTTTTTGACTTTAAAGGGGAAATTCAGCCAAGGATTTTAAATGGGCCTCTTGGACCT
456 CCTAATTTTTTTTT-ACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGA-CT
*
24538201 -ATTTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAA
519 GAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAA
* *
24538265 TCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTAATATCAGATAAATTAA
584 TCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAA
24538330 TGATCGA
649 TGATCGA
* *
24538337 TTCGTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAAAAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* ** * *
24538402 GAAATCTTAAACAAGTTAGATAATGAAATCGACATAAGCAGAAATTAAAAATTGAGTGAAC-AGA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
* * *
24538466 AGAAAATAAAGATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTGACAACTCCATTCAAAG
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
* * * * * * * *
24538531 GGCTCTAAGCACCCCTCAAATAAAGAATAATTGCAAGAAGAAGGCTGAAGACGGCTTCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
* * * *******************
24538596 TAAAAGATTGTTAAAACTACTTCTCTAGACA-AATGCAC-GGAGNNNNNNNNNNNNNNNNNNNNN
261 TAAAAGATTGTTAAAACTAC-T-TCTA-A-AGAATCCTCAAGAG--AAAATTCTTGGAGAACTCA
*****************************************************************
24538659 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
320 AAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGG
*****************************************************************
24538724 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
385 TGGCTGGCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAA
*****************************************************************
24538789 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
450 AAAAAACCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTG
************************************************
24538854 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTGAAAACAAGAAAG
515 GACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAG
* *
24538919 TGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTAATATCAGATAAA
580 TGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAA
24538984 TTAATGATCGA
645 TTAATGATCGA
* *
24538995 TTCGTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAAAAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* ** * *
24539060 GAAATCTTAAACAAGTTAGATAATGAAATCGACATAAGCAGAAATTAAAAATTGAGTGAAC-AGA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
* * *
24539124 AGAAAATAAAGATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTGACAACTCCATTCAAAG
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
* * * * * * *
24539189 GGCTCTAAGCACCCCTCAAATAAAGAATAATTGCAAGAAGAAGGCTGAAGATGGCCCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
*
24539254 TAAAAGATTGTTAAAACTACTTGTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
** *
24539319 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGGGTAACGGTGGCTT
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
*
24539384 GCCAAGCCATACATATATAGGCCTTCTAATTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAA
391 GCCAAGCCATAC--ATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAA
* *
24539449 AACCTTA-TTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCCCTTGGACT
454 AACCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACT
* * * * *
24539513 GAATTTTTACATAAAAAAATTAATGATCAGATGAATCTTGATTTTATTCAAATCAAGAAATTGAA
519 GAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAA
*
24539578 TCTTGATTTTCTTTTTCCTTCGTATATGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAA
584 TCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAA
24539643 TGATCGA
649 TGATCGA
*
24539650 TTCTTGCTTCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
*
24539715 GAAATCTTAAACAAATTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
*
24539780 AG------AAAATAAAGTCCTAAAAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
*
24539839 GGTTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
*
24539904 TAAAAGATTGTTAAAACTACTTCTAAAGAAACCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
*
24539969 ATTTTCACCCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
24540034 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* *
24540099 CCTAATTTTTTTTTTACTTTAAAGCGGAAATTCGTCCAAGGACTTTAAATGGGCCTCTTGGACTG
456 CCTAA-TTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTG
*
24540164 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGGAAGTGAAT
520 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAAT
24540229 CTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
585 CTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
24540294 GATCGA
650 GATCGA
24540300 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* * *
24540365 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGTAGAAATGAAAAAGAGATTAAACAACA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
*
24540430 AG------AAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAT
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
*
24540489 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAACGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
*
24540554 TAAAAGATTGTTAAAACTACTTCTAAAGAAACCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
* *
24540619 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTGAAGGTGTAATATATAACGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
*
24540684 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCGTAATAGGAAAACT-AAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* * *
24540748 CCTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGGCAAGGACTTTAAATGGGCCTCTTGGACT
456 CCTA-ATTT-TTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACT
* *
24540813 GAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAGATAAGAAAGTGAA
519 GAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAA
* *
24540878 TCATGATTTTCTTTTTCCTTTGTATACGCATCTAAGGCCCTTTGTGACTCATATCAGATGAATTA
584 TCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGG-CCTTTGTGACTCATATCAGATGAATTA
24540943 ATGATCGA
648 ATGATCGA
*
24540951 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAATGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
** *
24541016 GAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAATA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
* * *
24541081 AGAAAATAAAAATAAAGTCCTAAGATGCCCTGAAATCCCGAAAGAATTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
24541146 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
196 GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
* *
24541211 TAAAAAATTGTTAAAACTACTTCTAAAGAAACCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
261 TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
*
24541276 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTTAAGGTGTAATGTATAACGGTGGCTG
326 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
* *
24541341 GCCAAGCCAAACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGGAAACTAAAAAAAAAA
391 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
*
24541406 CCTAA-TTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACAGA
456 CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGA
*
24541470 ATTTTTACATAGAAAAATTAATGATTAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
521 ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
24541535 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
586 TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
24541600 ATCGA
651 ATCGA
* *
24541605 TTCGTACTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
1 TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
* * *
24541670 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGTGAGTGAACAGCA
66 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
*
24541735 AGAAAATAAAGATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
131 AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
*
24541800 AGCTCTAATCTCCCCTC
196 GGCTCTAATCTCCCCTC
24541817 AAANNNNNNN
Statistics
Matches: 16476, Mismatches: 3186, Indels: 343
0.82 0.16 0.02
Matches are distributed among these distances:
646 72 0.00
647 329 0.02
648 765 0.05
649 1145 0.07
650 1502 0.09
651 721 0.04
652 1059 0.06
653 1200 0.07
654 1653 0.10
655 2242 0.14
656 1999 0.12
657 977 0.06
658 1020 0.06
659 494 0.03
660 569 0.03
661 404 0.02
662 171 0.01
668 154 0.01
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.26
Consensus pattern (655 bp):
TTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAA
GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
AGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAAC
GGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATC
TAAAAGATTGTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGA
ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTG
GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
CCTAATTTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGA
ATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATC
TTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATG
ATCGA
Found at i:24543839 original size:653 final size:654
Alignment explanation
Indices: 24542218--24544068 Score: 2437
Period size: 658 Copynumber: 2.8 Consensus size: 654
24542208 NNNNNNNNNN
24542218 GCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGT
1 GCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGT
* *
24542283 GCCGATCAGTTTCTTTAACGTTGAAGAAGGCTGGAAACGCAACAAGGAATCTTAAACAAGTTAGA
66 GCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGA
** * * * *
24542348 TAATGAAATCGAAACAGGTAGAAATTATAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCC
131 TAATTTAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCC
* * *
24542413 TAAGAACCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAATGACTCTAATCTCCCTTCCAA
196 TAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAACGACTCTAATCTCCCCTCCAA
*
24542478 TGAAGAACAATGGCAAGAAGAAGGCTAAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTAC
261 TGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTAC
24542543 TTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGAATTTTCACTCACAAACAAAT
326 TTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGAATTTTCACTCACAAACAAAT
*
24542608 CTGAAAATTTAATGTAATTCAAGGTGTAATATATAACGGTGGCTGGCCAAGCCATACATATAGGC
391 CTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTGGCCAAGCCATACATATAGGC
****
24542673 CTTCTAACTATTTTACTAATCCTAATAGGAAAACTAAAAAAAAACCTAATTTTTTTTNNNNNNNN
456 CTTCTAACTATTTTACTAATCCTAATAGGAAAACTAAAAAAAAACCTAATTTTTTTT----GACT
*****************************************************************
24542738 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
517 TTAAAGGGGAAATTCGGCCAAGGATTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAA
*************************** * *
24542803 NNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAACAAGGAAGTGAATCTTGGTTTTCTTTTTCCT
582 TTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCT
24542868 TCGTATAC
647 TCGTATAC
24542876 GCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGT
1 GCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGT
*
24542941 GCCGATCAGTTTCTTTAATGTTGAAGAAGGTTGGAAACGCAACAAGAAATCTTAAACAAGTTAGA
66 GCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGA
*
24543006 TAATTTAATCGACACAAGCAGAAAATAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCC
131 TAATTTAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCC
*
24543071 TAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAACGACTCTATTCTCCCCTCCAA
196 TAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAACGACTCTAATCTCCCCTCCAA
24543136 TGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTAC
261 TGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTAC
*
24543201 TTATAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGAATTTTCACTCACAAACAAAT
326 TTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGAATTTTCACTCACAAACAAAT
* *
24543266 CTGAAAATTTAATGTAATTCAAGGTGGAATGTATAACGGTGGCTGGCCAAGACATACATATAGGC
391 CTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTGGCCAAGCCATACATATAGGC
* * * *
24543331 CTTCTAACTGTTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAACCTAA-TTATTTTGACTTTA
456 CTTCTAACTATTTTACTAATCCTAATAGGAAAACT-AAAAAAAAACCTAATTTTTTTTGACTTTA
24543395 AAGGGGAAATTCGGCCAAGGATTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTA
520 AAGGGGAAATTCGGCCAAGGATTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTA
24543460 ATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCG
585 ATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCG
24543525 TATAC
650 TATAC
24543530 GCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGT
1 GCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGT
* * *
24543595 GCCAATCAGTTTCTTTAATGTTGAAGAAGGCTAG-AACGCAACAACAAATCTTAAACAAGTTAGA
66 GCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGA
24543659 TAATTTAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCC
131 TAATTTAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCC
* *
24543724 TAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAACGGCTCTAGTCTCCCCTCCAA
196 TAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAACGACTCTAATCTCCCCTCCAA
*
24543789 TGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAACCTAAAAGATTGTTAAAACTAC
261 TGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTAC
* * *
24543854 TTCTAAAGAATCCTCAAGAGAAAATTCTTGGTGAACTCAAAGAGAATTTTCACGCATAAACAAAT
326 TTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGAATTTTCACTCACAAACAAAT
*
24543919 CTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGTTGGCCAAGCCATACATATAGGC
391 CTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTGGCCAAGCCATACATATAGGC
*
24543984 CTTCTAACTATTTTACTAATCCTAATAGGAAAACTAAAAAAAAACCTAATTTTTTTTTACTTTAA
456 CTTCTAACTATTTTACTAATCCTAATAGGAAAACTAAAAAAAAACCTAATTTTTTTTGACTTTAA
* *
24544049 CGGGGAAATTCGTCCAAGGA
521 AGGGGAAATTCGGCCAAGGA
24544069 CTTTNNNNNN
Statistics
Matches: 1048, Mismatches: 143, Indels: 9
0.87 0.12 0.01
Matches are distributed among these distances:
652 14 0.01
653 406 0.39
654 140 0.13
658 474 0.45
659 14 0.01
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.25
Consensus pattern (654 bp):
GCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGT
GCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGA
TAATTTAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCC
TAAGAAGCCTTGAAATCCCGAAAGATTTCACAACTCCATTCAAACGACTCTAATCTCCCCTCCAA
TGAAGAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTAC
TTCTAAAGAATCCTCAAGAGAAAATTCTTGGAGAACTCAAAGAGAATTTTCACTCACAAACAAAT
CTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCTGGCCAAGCCATACATATAGGC
CTTCTAACTATTTTACTAATCCTAATAGGAAAACTAAAAAAAAACCTAATTTTTTTTGACTTTAA
AGGGGAAATTCGGCCAAGGATTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTAA
TGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGT
ATAC
Found at i:24554108 original size:15 final size:15
Alignment explanation
Indices: 24554088--24554118 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24554078 CCAACCTTCA
*
24554088 AATTTTAGGTCAATT
1 AATTTTACGTCAATT
24554103 AATTTTACGTCAATT
1 AATTTTACGTCAATT
24554118 A
1 A
24554119 TACATAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (15 bp):
AATTTTACGTCAATT
Found at i:24556208 original size:11 final size:11
Alignment explanation
Indices: 24556192--24556218 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
24556182 TAGAAATTAG
24556192 TTTGTGAAACT
1 TTTGTGAAACT
24556203 TTTGTGAAACT
1 TTTGTGAAACT
24556214 TTTGT
1 TTTGT
24556219 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:24575337 original size:19 final size:19
Alignment explanation
Indices: 24575313--24575350 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
24575303 AAAACAAGAA
24575313 AGCGAATCTTGATTTTCTT
1 AGCGAATCTTGATTTTCTT
24575332 AGCGAATCTTGATTTTCTT
1 AGCGAATCTTGATTTTCTT
24575351 TTTCCTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.47
Consensus pattern (19 bp):
AGCGAATCTTGATTTTCTT
Found at i:24576029 original size:669 final size:663
Alignment explanation
Indices: 24574544--24576199 Score: 2635
Period size: 669 Copynumber: 2.5 Consensus size: 663
24574534 NNNATCCAAT
* *
24574544 ATTTGTTTTTTACTTTAAA-AGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGAAT
1 ATTT-TTTTTTACTGTAAAGA-GGAAATTCGGCCAAGGAATTTAAATGGGCCTCTTGGACTGAAT
* *
24574608 TTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATCTT
64 TTTTACATAGAAAAATTAATGATCAGATGAATCTTGAATTTCTTGAAAACAAGAAAGCGAATCTT
* *
24574673 GATTTTC-T-----T-TT--T-C--T-TTCGTATACGCATCTAAGGCCTTTGTCACTCATATCAG
129 GATTTTCTTAGCAATCTTGATACGATCTTTGTATACGCATCTAAGGCCTTTGTGACTCATATCAG
*
24574725 ATGAATTAATGATCGATTCTTGCTGCCAAGAGCGGTGCCGATCAGTTT-TGTTAATGTTGAAGAA
194 ATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCT-TTAATGTTGAAGAA
24574789 GGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAA
258 GGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAA
24574854 AAAGAGATTGAACAACAAGAAAAAAAATAAAGTCCTAAGAAGCCTTGAAATCCGAAAGATTTCAC
323 AAAGAGATTGAACAACAAGAAAAAAAATAAAGTCCTAAGAAGCCTTGAAATCCGAAAGATTTCAC
* * *
24574919 AACTCCATTCAAACGGCTCTAATCGCCCCTCAAATCAAGAATATTTGCAAGAAGAAGGCTGAAGA
388 AACTCCATTCAAACGGCTCTAATCGCCCCTCAAATCAAGAACAATGGCAAGAAGAAGGCTGAAGA
* *
24574984 TGGCTCCCACAATCTAAAAGATTTTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTCTTGG
453 TGGCTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAAACCTCAAGAGAAAATTCTTGG
24575049 AGAACTCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATG
518 AGAACTCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATG
*
24575114 TATAACGGTGGCTGGCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAA
583 TATAACGGTGGCTGGCCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAA
24575179 AACTAAAAAAAACTTA
648 AACTAAAAAAAACTTA
* *
24575195 ATTTTTTTTTACTTTAAAGAGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTGAATTT
1 ATTTTTTTTTACTGTAAAGAGGAAATTCGGCCAAGGAATTTAAATGGGCCTCTTGGACTGAATTT
24575260 TTACATAGAAAAATTAATGATCAGATGAATCTTGAATTTCTTGAAAACAAGAAAGCGAATCTTGA
66 TTACATAGAAAAATTAATGATCAGATGAATCTTGAATTTCTTGAAAACAAGAAAGCGAATCTTGA
* **
24575325 TTTTCTTAGCGAATCTTGATTTTCTTTTTCCTTTGTATACGCATCTAAGGCCTTTGTGACTCATA
131 TTTTCTTAGC-AATCTTGA--TAC--GAT-CTTTGTATACGCATCTAAGGCCTTTGTGACTCATA
24575390 TCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAA
190 TCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAA
* *
24575455 GAAGGCTGGAAACGTAACAAGAAATCTTAAACAAGTTTGATAATTTAATCGACACAAGCAGAAAT
255 GAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAAT
*
24575520 TAAAAAGAGACTGAACAACAAGAAAAAAAATAAAGTCCTAAGAAGCCTTGAAATCCGAAAGATTT
320 TAAAAAGAGATTGAACAACAAGAAAAAAAATAAAGTCCTAAGAAGCCTTGAAATCCGAAAGATTT
* * * *
24575585 CACAACTCCATTCAAACGGCTCTAATCTCCCCTCCAATGAAGAACAATGGCTAGAAGAAGGCTGA
385 CACAACTCCATTCAAACGGCTCTAATCGCCCCTCAAATCAAGAACAATGGCAAGAAGAAGGCTGA
24575650 AGATGGCTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAA-AAACCTCAAGAGAAAATTCT
450 AGATGGCTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAAACCTCAAGAGAAAATTCT
24575714 TGGAGAACTCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTA
515 TGGAGAACTCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTA
*
24575779 ATGTATAAGGGTGGCTGGCCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAG
580 ATGTATAACGGTGGCTGGCCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAG
24575844 GAAAACTAAAAAAAAACTTA
645 GAAAACT-AAAAAAAACTTA
*
24575864 ATTTTTTTTTACTGTAAAGGGGAAATTCGGCCAAGGAATTTAAATGGGCCTCTTGGACTGAATTT
1 ATTTTTTTTTACTGTAAAGAGGAAATTCGGCCAAGGAATTTAAATGGGCCTCTTGGACTGAATTT
* * *
24575929 TTACATAG-AAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAATAAAGTGAATCTTGA
66 TTACATAGAAAAATTAATGATCAGATGAATCTTGAATTTCTTGAAAACAAGAAAGCGAATCTTGA
*
24575993 --TT-TT--C--TCTT--T-C---CTTTGTATACGCATCT-ATGCCTTTGTGACTCATATCAGAT
131 TTTTCTTAGCAATCTTGATACGATCTTTGTATACGCATCTAAGGCCTTTGTGACTCATATCAGAT
*
24576044 GAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCCTTAATGTTGAAGAAGGC
196 GAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGC
** * *
24576109 TGGAAACGCAAC-AGAAATCTTAAACAAGTTAGAT-ATGAAATCGACACAGGTAGAAATT-AAAA
261 TGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAAAAA
24576171 GAGATTGAAC-ACAAGAAAATAAAAATAAA
326 GAGATTGAACAACAAG-AAA-AAAAATAAA
24576200 NNNNNNNNNN
Statistics
Matches: 947, Mismatches: 34, Indels: 53
0.92 0.03 0.05
Matches are distributed among these distances:
644 5 0.01
645 16 0.02
646 29 0.03
647 21 0.02
648 98 0.10
649 16 0.02
650 127 0.13
651 6 0.01
655 1 0.00
656 1 0.00
657 1 0.00
658 2 0.00
660 4 0.00
662 1 0.00
663 2 0.00
665 2 0.00
666 2 0.00
667 1 0.00
668 207 0.22
669 404 0.43
670 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (663 bp):
ATTTTTTTTTACTGTAAAGAGGAAATTCGGCCAAGGAATTTAAATGGGCCTCTTGGACTGAATTT
TTACATAGAAAAATTAATGATCAGATGAATCTTGAATTTCTTGAAAACAAGAAAGCGAATCTTGA
TTTTCTTAGCAATCTTGATACGATCTTTGTATACGCATCTAAGGCCTTTGTGACTCATATCAGAT
GAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGC
TGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAAAAA
GAGATTGAACAACAAGAAAAAAAATAAAGTCCTAAGAAGCCTTGAAATCCGAAAGATTTCACAAC
TCCATTCAAACGGCTCTAATCGCCCCTCAAATCAAGAACAATGGCAAGAAGAAGGCTGAAGATGG
CTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAAACCTCAAGAGAAAATTCTTGGAGA
ACTCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTAT
AACGGTGGCTGGCCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAAC
TAAAAAAAACTTA
Found at i:24578280 original size:653 final size:654
Alignment explanation
Indices: 24577035--24578468 Score: 2685
Period size: 653 Copynumber: 2.2 Consensus size: 654
24577025 NNNNNNNNNN
*
24577035 TTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGCTGTAATGTATAAGGGTGGCTGG
1 TTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAGGGTGGCTGG
24577100 CCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAAC
66 CCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAAC
24577165 CTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTG
131 CTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTG
24577230 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGAATTTCTTGAAAACAAGAAAGCGAAT
196 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGAATTTCTTGAAAACAAGAAAGCGAAT
** *
24577295 CTTGATTTTCTTTTTCCTTTGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTGAT
261 CTTGATTTTCTTTTTCCTTCATATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
* *
24577360 GATTGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACG
326 GATCGATTCTTGCTGCCAAGAGGGGAGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACG
24577425 CAACAAGAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAAAAACAGACTGA
391 CAACAAGAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAAAAACAGACTGA
*
24577490 ACAACAAGAAAAAAAATAAAGTCCTAAGAAGCCTTGAAATCTGAAAGATTTCACAACTCCATTCA
456 ACAACAAGAAAAAAAATAAAGTCCTAAGAAGCCTTGAAATCCGAAAGATTTCACAACTCCATTCA
*
24577555 AACGGCTCTAATCTCCCCTCCAATGAAGAACAATGGCAAAAAGAAGGCTGAAGATGGCTCCCACA
521 AACGGCTCTAATCTCCCCTCCAATGAAAAACAATGGCAAAAAGAAGGCTGAAGATGGCTCCCACA
*
24577620 ATCTAAAAGATTGTTAAAACTACTTCTAAA-AAACCTCAAGAGAAAATTCTTGGAGAACTCAAAG
586 ATCTAAAAGATTGTTAAAACAACTTCTAAAGAAACCTCAAGAGAAAATTCTTGGAGAACTCAAAG
24577684 AGAA
651 AGAA
*
24577688 TTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAGGGTGGCCGG
1 TTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAGGGTGGCTGG
*
24577753 CCAAGACATGCATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAAC
66 CCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAAC
24577818 CTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTG
131 CTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTG
* *
24577883 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAAT
196 AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGAATTTCTTGAAAACAAGAAAGCGAAT
24577948 CTTGATTTTCTTTTTCCTTCATATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
261 CTTGATTTTCTTTTTCCTTCATATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
*
24578013 GATCGATTCTTGCTGCCCAGAGGGGAGCCGATCAGTTTCGTTTAATGTTGAAGAAGGCTGGAAAC
326 GATCGATTCTTGCTGCCAAGAGGGGAGCCGATCAGTTTC-TTTAATGTTGAAGAAGGCTGGAAAC
*
24578078 GCAACAAGAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAAAAAGAGACTG
390 GCAACAAGAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAAAAACAGACTG
24578143 AACAACAAG-AAAAAAATAAAGTCCTAAGAAGCCTTGAAATCCGAAAGATTTCACAACTCCATTC
455 AACAACAAGAAAAAAAATAAAGTCCTAAGAAGCCTTGAAATCCGAAAGATTTCACAACTCCATTC
*
24578207 AAACGGCTCTAATCTCCCCTCCAATGAAAAACAATGGCAAGAAGAAGGCTGAAGATGGCTCCCAC
520 AAACGGCTCTAATCTCCCCTCCAATGAAAAACAATGGCAAAAAGAAGGCTGAAGATGGCTCCCAC
24578272 AATCTAAAAGATTGTTAAAACAACTTCTAAAGAAACCTCAAGAGAAAATTCTTGGAGAACTCAAA
585 AATCTAAAAGATTGTTAAAACAACTTCTAAAGAAACCTCAAGAGAAAATTCTTGGAGAACTCAAA
24578337 GAGAA
650 GAGAA
*
24578342 TTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAAGGTGGCTGG
1 TTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAGGGTGGCTGG
24578407 CCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAA-TAAAAAAAAA
66 CCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAA
24578469 CCNNNNNNNN
Statistics
Matches: 760, Mismatches: 19, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
653 510 0.67
654 250 0.33
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (654 bp):
TTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAAGGGTGGCTGG
CCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAAC
CTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACTG
AATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGAATTTCTTGAAAACAAGAAAGCGAAT
CTTGATTTTCTTTTTCCTTCATATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAAT
GATCGATTCTTGCTGCCAAGAGGGGAGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACG
CAACAAGAAATCTTAAACAAGTTAGATAATTTAATCGACACAAGCAGAAATTAAAAACAGACTGA
ACAACAAGAAAAAAAATAAAGTCCTAAGAAGCCTTGAAATCCGAAAGATTTCACAACTCCATTCA
AACGGCTCTAATCTCCCCTCCAATGAAAAACAATGGCAAAAAGAAGGCTGAAGATGGCTCCCACA
ATCTAAAAGATTGTTAAAACAACTTCTAAAGAAACCTCAAGAGAAAATTCTTGGAGAACTCAAAG
AGAA
Found at i:24613860 original size:653 final size:653
Alignment explanation
Indices: 24611728--24614034 Score: 4294
Period size: 653 Copynumber: 3.5 Consensus size: 653
24611718 NNNNNNNNNN
* *
24611728 ACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAATAAAGTGAATCTTGATT
1 ACATAGAAAAATTAATGATCAGATGAAACTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATT
*
24611793 TTCTTTTTCCTTTGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGAT
66 TTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGAT
24611858 TCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCGTTAATGTTGAAGAAGGCTGGAAACGCAACAAG
131 TCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCGTTAATGTTGAAGAAGGCTGGAAACGCAACAAG
* *
24611923 AAATCTTAAACAAGTTAGATAATGAAATCGACACAAGTAGAAATTAAAAAGAGATTGAAGAACAA
196 AAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACAA
*
24611988 GAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAATCTCGAAAGATTTCACAACTCCATTCAAACG
261 GAAAATAAAAATAAAGTCCTAAGAACCCTTGAAATCTCGAAAGATTTCACAACTCCATTCAAACG
24612053 GCTCTAATCTCCCCTCAAATGAAGAATAATTACAAAAGAAGGCTGAAGATGGCTCCCACAATCTA
326 GCTCTAATCTCCCCTCAAATGAAGAATAATTACAAAAGAAGGCTGAAGATGGCTCCCACAATCTA
24612118 AAAGATTTTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTATTGGAGAACTCAAAGAGAAT
391 AAAGATTTTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTATTGGAGAACTCAAAGAGAAT
24612183 TTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCCAGC
456 TTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCCAGC
24612248 CAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAACC
521 CAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAACC
24612313 TAATTTTTTTTACTTTAAAGGGGAAATTCGGCCAAAGGACTTTAAATGGGCCCCTTGGACTGAAT
586 TAATTTTTTTTACTTTAAAGGGGAAATTCGGCC-AAGGACTTTAAATGGGCCCCTTGGACTGAAT
24612378 TTTT
650 TTTT
24612382 ACATAGAAAAATTAATGATCAGATGAAACTTGATTTTCTTG-AAACAAGAAAGTGAATCTTGATT
1 ACATAGAAAAATTAATGATCAGATGAAACTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATT
24612446 TTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGAT
66 TTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGAT
*
24612511 TCTTGCTGCCAAGAGGGGTGCCGATCAGTTTC-TTGAATGTTGAAGAAGGCTGAAAACGCAACAA
131 TCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCGTT-AATGTTGAAGAAGGCTGGAAACGCAACAA
*
24612575 AAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
195 GAAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACA
24612640 AGAAAATAAAAATAAAGTCCTAAGAACCCTTGAAATCTCGAAAGATTTCACAACTCCATTCAAAC
260 AGAAAATAAAAATAAAGTCCTAAGAACCCTTGAAATCTCGAAAGATTTCACAACTCCATTCAAAC
* *
24612705 GGCTCTAATCTCCCCTCAAATGAAGAATAATTGCAAGAAGAAGGCTGAAGATCGCTCCCACAATC
325 GGCTCTAATCTCCCCTCAAATGAAGAATAATTACAA-AAGAAGGCTGAAGATGGCTCCCACAATC
* *
24612770 TAAAAGATTTTTAAAACTACTTCTAAAGAATCCTGAAGAGAAAATTCTTGGAGAACTCAAAGAGA
389 TAAAAGATTTTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTATTGGAGAACTCAAAGAGA
* * * * **
24612835 ATTTTCACTCACAAGCAAATCTGAAAATTTAATGTAATTCAAGCTGAAATGTATAAGGGTGGCTG
454 ATTTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCCA
*
24612900 GCCAAGACATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
519 GCCAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAA
* * *
24612965 CCTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGCCAAGGACTTTAAATGGGCCTCTTGGACT
584 CCTA--ATT-TTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCCCTTGGACT
24613030 GAATTTTT
646 GAATTTTT
*
24613038 ACATAGAAAAATTAATGATCAGATGAATCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATT
1 ACATAGAAAAATTAATGATCAGATGAAACTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATT
24613103 TTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGAT
66 TTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGAT
24613168 TCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCGTTAATGTTGAAGAAGGCTGGAAACGCAACAAG
131 TCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCGTTAATGTTGAAGAAGGCTGGAAACGCAACAAG
* *
24613233 AAATCTTAAACAAGTTAGATAATGAAATCGACACAAGTAGAAATTAAAAAGAGATTGAAGAACAA
196 AAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACAA
* *
24613298 GAAAATAAATATAAAGTCCTAAGAAGCCTTGAAATCTCGAAAGATTTCACAACTCCATTCAAACG
261 GAAAATAAAAATAAAGTCCTAAGAACCCTTGAAATCTCGAAAGATTTCACAACTCCATTCAAACG
24613363 GCTCTAATCTCCCCTCAAATGAAGAATAATTACAAAAGAAGGCTGAAGATGGCTCCCACAATCTA
326 GCTCTAATCTCCCCTCAAATGAAGAATAATTACAAAAGAAGGCTGAAGATGGCTCCCACAATCTA
24613428 AAAGATTTTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTATTGGAGAACTCAAAGAGAAT
391 AAAGATTTTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTATTGGAGAACTCAAAGAGAAT
24613493 TTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCCAGC
456 TTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCCAGC
24613558 CAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAACC
521 CAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAACC
24613623 TAATTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCCCTTGGACTGAATT
586 TAATTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCCCTTGGACTGAATT
24613688 TTT
651 TTT
24613691 ACATAGAAAAATTAATGATCAGATGAAACTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATT
1 ACATAGAAAAATTAATGATCAGATGAAACTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATT
24613756 TTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGAT
66 TTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGAT
*
24613821 TCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTTTAATGTTGAAGAAGGCTGGAAACGCAACAAG
131 TCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCGTTAATGTTGAAGAAGGCTGGAAACGCAACAAG
24613886 AAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACAA
196 AAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACAA
24613951 GAAAATAAAAATAAAGTCCTAAGAACCCTTGAAATCTCGAAAGATTTCACAACTCCATTCAAACG
261 GAAAATAAAAATAAAGTCCTAAGAACCCTTGAAATCTCGAAAGATTTCACAACTCCATTCAAACG
24614016 GCTCTAATCTCCCCTCAAA
326 GCTCTAATCTCCCCTCAAA
24614035 NNNNNNNNNN
Statistics
Matches: 1597, Mismatches: 49, Indels: 15
0.96 0.03 0.01
Matches are distributed among these distances:
652 2 0.00
653 706 0.44
654 259 0.16
656 293 0.18
657 335 0.21
658 2 0.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (653 bp):
ACATAGAAAAATTAATGATCAGATGAAACTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATT
TTCTTTTTCCTTCGTATACGCATCTAAGGCCTTTGTGACTCATATCAGATGAATTAATGATCGAT
TCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCGTTAATGTTGAAGAAGGCTGGAAACGCAACAAG
AAATCTTAAACAAGTTAGATAATGAAATCGACACAAGCAGAAATTAAAAAGAGATTGAACAACAA
GAAAATAAAAATAAAGTCCTAAGAACCCTTGAAATCTCGAAAGATTTCACAACTCCATTCAAACG
GCTCTAATCTCCCCTCAAATGAAGAATAATTACAAAAGAAGGCTGAAGATGGCTCCCACAATCTA
AAAGATTTTTAAAACTACTTCTAAAGAATCCTCAAGAGAAAATTATTGGAGAACTCAAAGAGAAT
TTTCACTCACAAACAAATCTGAAAATTTAATGTAATTCAAGGTGTAATGTATAACGGTGGCCAGC
CAAGCCATACATATAGGCCTTCTAACTATTTTCCTAGTCCTAATAGGAAAACTAAAAAAAAAACC
TAATTTTTTTTACTTTAAAGGGGAAATTCGGCCAAGGACTTTAAATGGGCCCCTTGGACTGAATT
TTT
Found at i:24636132 original size:655 final size:655
Alignment explanation
Indices: 24633938--24637012 Score: 5665
Period size: 655 Copynumber: 4.7 Consensus size: 655
24633928 NNNNNNNNNN
24633938 ACTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGAT
1 ACTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGAT
24634003 TTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTT
66 TTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTT
*
24634068 GTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGGGGGGTGCCGATCAGTTTCTT
131 GTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTT
* *
24634133 TAATGTTGAAGAAGGCTGGAAATGCAACAAAAAATCTTAAACAAGTTAGATAATGAAATCGACAC
196 TAATGTTGAAGAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATGAAATCGACAC
24634198 AAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAA
261 AAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAA
*
24634263 TCTCGAAAGATTTCACAACTCCATTCAAACGGCTCTAATCTCCCCTCAAATGAAGAATAATTACA
326 TCTCGAAAGATTTCACAACTCCATTCAAACGGCTCTAATCTCCCCTCAAATGAAGAATAATTGCA
*
24634328 AGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTTTTAAAACTACTTCTAAAGAATCCTC
391 AGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTC
24634393 AAGAGAAAATTCTTGGAGAACTCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGT
456 AAGAGAAAATTCTTGGAGAACTCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGT
*
24634458 AATTCAAGGTGTAATGTATAAGGGTGGCTGGCCAAGACATACATATAGGCGTTCTAACTATTTTC
521 AATTCAAGGTGTAATGTATAAGGGTGGCTGGCCAAGACATACATATAGGCCTTCTAACTATTTTC
24634523 CTAGTCCTAATAGGAAAACTAAGAAAAAACCTATTTTTGTTTTTTAC-TTATAAAGGGAAATTCG
586 CTAGTCCTAATAGGAAAACTAA-AAAAAACCTATTTTTGTTTTTTACTTTA-AAAGGGAAATTCG
*
24634587 GCTAAGG
649 GCCAAGG
*
24634594 ACTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTAATGTTCAGATGAATCTTGAT
1 ACTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGAT
* *
24634659 TTTCTTGAAAACAAGAAACTGAATCTTGATTTTCTTTTTCCTTTGTATACGCATCTAAGGCCTTT
66 TTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTT
* *
24634724 GTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGCGGTGCCGATCAGCTTCTT
131 GTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTT
* **
24634789 TAGTGTTGAAGAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATTTAATCGACAC
196 TAATGTTGAAGAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATGAAATCGACAC
24634854 AAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAA
261 AAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAA
*
24634919 TCTCGAAAGATTTCACAACTCCATTCAAATGGCTCTAATCTCCCCTCAAATGAAGAATAATTGCA
326 TCTCGAAAGATTTCACAACTCCATTCAAACGGCTCTAATCTCCCCTCAAATGAAGAATAATTGCA
*
24634984 AGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAA-AAACCTC
391 AGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTC
*
24635048 AAGAGAAAATTCTTGGAGAACTCAATGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGT
456 AAGAGAAAATTCTTGGAGAACTCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGT
* * *
24635113 AATTCAAGGTGTAATGTATAACGGTGGCCGGCCAAGCCATACATATAGGCCTTCTAACTATTTTC
521 AATTCAAGGTGTAATGTATAAGGGTGGCTGGCCAAGACATACATATAGGCCTTCTAACTATTTTC
* * *
24635178 CTAGTCCTAATAGGAAAACTAAAAAAAACCTA--ATT-TTTTTTACTTTAAAGGGGAAATTCGAC
586 CTAGTCCTAATAGGAAAACTAAAAAAAACCTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGC
24635240 CAAGG
651 CAAGG
* *
24635245 ACTTTAAATGGGCCCCTTGGACTGAATTTTGACATAGAAAAATTAATGATCAGATGAATCTTGAT
1 ACTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGAT
* *
24635310 TTTCTTGAAAACAATAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGACTTT
66 TTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTT
*
24635375 GTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTTTT
131 GTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTT
24635440 TAATGTTGAAGAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATGAAATCGACAC
196 TAATGTTGAAGAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATGAAATCGACAC
*
24635505 AAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCCTAAGAACCCTTGAAA
261 AAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAA
*
24635570 TCTCGAAAGATTTCACAACTCCATTCAAACGGCTCTAATCTCCCCTCAAATGAAGAATAGTTGCA
326 TCTCGAAAGATTTCACAACTCCATTCAAACGGCTCTAATCTCCCCTCAAATGAAGAATAATTGCA
24635635 AGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTC
391 AGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTC
* **
24635700 AAGAGAAAATTCTTGGAGAACTTAAAGAGAATTTTCACTCACAAGTAAATCTGAAAATTTAATGT
456 AAGAGAAAATTCTTGGAGAACTCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGT
24635765 AATTCAAGGTGTAATGTATAAGGGTGGCTGGCCAAGACATACATATAGGCCTTCTAACTATTTTC
521 AATTCAAGGTGTAATGTATAAGGGTGGCTGGCCAAGACATACATATAGGCCTTCTAACTATTTTC
24635830 CTAGTCCTAATAGGAAAACTAAAAAAAACCTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGC
586 CTAGTCCTAATAGGAAAACTAAAAAAAACCTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGC
24635895 CAAGG
651 CAAGG
*
24635900 ACTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTAATGATCAGATGACTCTTGAT
1 ACTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGAT
24635965 TTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTT
66 TTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTT
24636030 GTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTT
131 GTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTT
* *
24636095 TAATGTTGAAGAAGGCTGGAAATGCAACAAAAAATCTTAAACAAGTTAGATAATGAAATCGACAC
196 TAATGTTGAAGAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATGAAATCGACAC
24636160 AAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAA
261 AAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAA
* *
24636225 TCTCGAAAGATTTCACAACTCCATTCAAACGGCTCTAATCTCCTCTCAAATGAAGAATAATTACA
326 TCTCGAAAGATTTCACAACTCCATTCAAACGGCTCTAATCTCCCCTCAAATGAAGAATAATTGCA
* * *
24636290 AGAAGAAGGCTGAACATGGCTCCCACAATCTAAAAGATTTTTAAAACTACTTCTAACGAATCCTC
391 AGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTC
* * *
24636355 AAGAGAAAATTCTTGGAGAACCCAAAGAGAATTTTCTCTCACAAACAAATCTAAAAATTTAATGT
456 AAGAGAAAATTCTTGGAGAACTCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGT
24636420 AATTCAAGGTGTAATGTATAAGGGTGGCTGGCCAAGACATACATATAGGCCTTCTAACTATTTTC
521 AATTCAAGGTGTAATGTATAAGGGTGGCTGGCCAAGACATACATATAGGCCTTCTAACTATTTTC
24636485 CTAGTCCTAATAGGAAAACTAAAAAAAACCTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGC
586 CTAGTCCTAATAGGAAAACTAAAAAAAACCTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGC
24636550 CAAGG
651 CAAGG
24636555 ACTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGAT
1 ACTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGAT
*
24636620 TTTCTTGAAAATAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTT
66 TTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTT
24636685 GTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTT
131 GTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTT
*
24636750 TAATGTTGAAGAAGGTTGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATGAAATCGACAC
196 TAATGTTGAAGAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATGAAATCGACAC
24636815 AAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAA
261 AAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAA
24636880 TCTCGAAAGATTTCACAACTCCATTCAAACGGCTCTAATCTCCCCTCAAATGAAGAATAATTGCA
326 TCTCGAAAGATTTCACAACTCCATTCAAACGGCTCTAATCTCCCCTCAAATGAAGAATAATTGCA
*
24636945 AGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAATCCAC
391 AGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTC
24637010 AAG
456 AAG
24637013 CAAAGAAAAC
Statistics
Matches: 2331, Mismatches: 83, Indels: 11
0.96 0.03 0.00
Matches are distributed among these distances:
651 456 0.20
652 166 0.07
654 12 0.01
655 1264 0.54
656 433 0.19
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (655 bp):
ACTTTAAATGGGCCTCTTGGACTGAATTTTTACATAGAAAAATTAATGATCAGATGAATCTTGAT
TTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCATCTAAGGCCTTT
GTGACTCATATCAGATGAATTAATGATCGATTCTTGCTGCCAAGAGGGGTGCCGATCAGTTTCTT
TAATGTTGAAGAAGGCTGGAAACGCAACAAGAAATCTTAAACAAGTTAGATAATGAAATCGACAC
AAGCAGAAATTAAAAAGAGATTGAACAACAAGAAAATAAAAATAAAGTCCTAAGAAGCCTTGAAA
TCTCGAAAGATTTCACAACTCCATTCAAACGGCTCTAATCTCCCCTCAAATGAAGAATAATTGCA
AGAAGAAGGCTGAAGATGGCTCCCACAATCTAAAAGATTGTTAAAACTACTTCTAAAGAATCCTC
AAGAGAAAATTCTTGGAGAACTCAAAGAGAATTTTCACTCACAAACAAATCTGAAAATTTAATGT
AATTCAAGGTGTAATGTATAAGGGTGGCTGGCCAAGACATACATATAGGCCTTCTAACTATTTTC
CTAGTCCTAATAGGAAAACTAAAAAAAACCTATTTTTGTTTTTTACTTTAAAAGGGAAATTCGGC
CAAGG
Found at i:24655041 original size:29 final size:29
Alignment explanation
Indices: 24654771--24655057 Score: 242
Period size: 29 Copynumber: 9.8 Consensus size: 29
24654761 ATCGATTAAA
* * * *
24654771 GAAAATGGATAGTTTCGACTATCGAATAT
1 GAAAAGGGATGGTTACGACCATCGAATAT
* *
24654800 GAAAAAGGATGGTGACGACCATC-AATTAT
1 GAAAAGGGATGGTTACGACCATCGAA-TAT
* * * *
24654829 GAAAAGAGATGGTGACAACCATTGAATAT
1 GAAAAGGGATGGTTACGACCATCGAATAT
* *** * *
24654858 GAAAAGGGATAGTTTTAACTATCGACTAT
1 GAAAAGGGATGGTTACGACCATCGAATAT
* * *
24654887 GAAAAGAGATGGTTACGACCA-CCACTTAAT
1 GAAAAGGGATGGTTACGACCATCGA-AT-AT
*
24654917 GAAAAGGGATGGTTCCGACCA-C-AACTTAAT
1 GAAAAGGGATGGTTACGACCATCGAA--T-AT
* * *
24654947 GGAAAGGGATGGTTTCAACCATCGAATAT
1 GAAAAGGGATGGTTACGACCATCGAATAT
*
24654976 GGAAAA-GGATGGTGACGACCATCGAATAT
1 -GAAAAGGGATGGTTACGACCATCGAATAT
* *
24655005 GAAAAGGGATTGTGACGACCATCGAATAT
1 GAAAAGGGATGGTTACGACCATCGAATAT
24655034 GAAAAGGGATGGTTACGACCATCG
1 GAAAAGGGATGGTTACGACCATCG
24655058 TTTAGCACAC
Statistics
Matches: 210, Mismatches: 38, Indels: 20
0.78 0.14 0.07
Matches are distributed among these distances:
28 9 0.04
29 147 0.70
30 51 0.24
31 1 0.00
32 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.22
Consensus pattern (29 bp):
GAAAAGGGATGGTTACGACCATCGAATAT
Found at i:24661883 original size:28 final size:28
Alignment explanation
Indices: 24661807--24662132 Score: 309
Period size: 28 Copynumber: 11.6 Consensus size: 28
24661797 CTAGAAAACT
24661807 GAAAGCCTTTGA-GGCAAACCTCTGAAAG
1 GAAAGCCTTT-ATGGCAAACCTCTGAAAG
* * *
24661835 AAAAGCCTTTTATGACTAACCTCTGAAAG
1 GAAAGCC-TTTATGGCAAACCTCTGAAAG
** *
24661864 GAAAGCCTTTATGGGGAACCTCTAAAAG
1 GAAAGCCTTTATGGCAAACCTCTGAAAG
* *
24661892 GAAAGCCTTTATGGAAAACCTCTAAAAG
1 GAAAGCCTTTATGGCAAACCTCTGAAAG
* *
24661920 GAAAGCCTTTATGGAAAACCTTTGAAAG
1 GAAAGCCTTTATGGCAAACCTCTGAAAG
* * * * *
24661948 GAAAGTCGTTGTGGCAAAACTTTGAAAG
1 GAAAGCCTTTATGGCAAACCTCTGAAAG
* * * *
24661976 GAAATCCTTTTTGTCGAACCTCTGAAAG
1 GAAAGCCTTTATGGCAAACCTCTGAAAG
*
24662004 GAAAGCCTTTATGGCAAACCTTTGAAAG
1 GAAAGCCTTTATGGCAAACCTCTGAAAG
* *
24662032 GAAAGCCTTT-TGGACGAACCTCTGAAGG
1 GAAAGCCTTTATGG-CAAACCTCTGAAAG
**
24662060 GAAAGCCTTTATGGTGAACCTCT-AGAAG
1 GAAAGCCTTTATGGCAAACCTCTGA-AAG
* * ** *
24662088 AAAAGCCTTTGTGG-AAATTTCTGAACAT
1 GAAAGCCTTTATGGCAAACCTCTGAA-AG
*
24662116 GAAAGCCCTTATGGCAA
1 GAAAGCCTTTATGGCAA
24662133 CCATTAGAAT
Statistics
Matches: 246, Mismatches: 44, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
27 10 0.04
28 208 0.85
29 28 0.11
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (28 bp):
GAAAGCCTTTATGGCAAACCTCTGAAAG
Found at i:24661907 original size:13 final size:13
Alignment explanation
Indices: 24661891--24661942 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
24661881 ACCTCTAAAA
*
24661891 GGAAAGCCTTTAT
1 GGAAAACCTTTAT
* *
24661904 GGAAAACCTCTAAAA
1 GGAAAACCT-T-TAT
*
24661919 GGAAAGCCTTTAT
1 GGAAAACCTTTAT
24661932 GGAAAACCTTT
1 GGAAAACCTTT
24661943 GAAAGGAAAG
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
13 19 0.63
14 2 0.07
15 9 0.30
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (13 bp):
GGAAAACCTTTAT
Found at i:24665136 original size:33 final size:33
Alignment explanation
Indices: 24665099--24665195 Score: 104
Period size: 33 Copynumber: 3.2 Consensus size: 33
24665089 ATGAGTTAAT
24665099 ACATGACTTAATTTAATGATGCAAACTTAACTA
1 ACATGACTTAATTTAATGATGCAAACTTAACTA
*
24665132 ACATGA---AAGTT-AT-AT---AA-TTAAACTA
1 ACATGACTTAATTTAATGATGCAAACTT-AACTA
*
24665157 AAATGACTTAATTTAATGATGCAAACTTAACTA
1 ACATGACTTAATTTAATGATGCAAACTTAACTA
24665190 ACATGA
1 ACATGA
24665196 AAGTTACATA
Statistics
Matches: 50, Mismatches: 4, Indels: 20
0.68 0.05 0.27
Matches are distributed among these distances:
24 2 0.04
25 12 0.24
28 6 0.12
29 4 0.08
30 6 0.12
33 18 0.36
34 2 0.04
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.32
Consensus pattern (33 bp):
ACATGACTTAATTTAATGATGCAAACTTAACTA
Found at i:24667103 original size:27 final size:27
Alignment explanation
Indices: 24667045--24667104 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
24667035 CTATCCCGGT
*
24667045 GGACTACCCCGTGTTTACTGTCCCACC
1 GGACTACCCCGTGTTTACTGTCCCAAC
* *
24667072 AGACTACCCTGTGTTTACTGTCCCAAC
1 GGACTACCCCGTGTTTACTGTCCCAAC
24667099 GGACTA
1 GGACTA
24667105 TATTGGTCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.20, C:0.35, G:0.18, T:0.27
Consensus pattern (27 bp):
GGACTACCCCGTGTTTACTGTCCCAAC
Found at i:24671553 original size:20 final size:19
Alignment explanation
Indices: 24671528--24671566 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
24671518 ATTGAGGGAG
*
24671528 TAAAAAATTTTGAGGAAATA
1 TAAAAAATTATGA-GAAATA
24671548 TAAAAAATTATGAGAAATA
1 TAAAAAATTATGAGAAATA
24671567 CAGAAAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.59, C:0.00, G:0.13, T:0.28
Consensus pattern (19 bp):
TAAAAAATTATGAGAAATA
Found at i:24671573 original size:19 final size:19
Alignment explanation
Indices: 24671529--24671594 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
24671519 TTGAGGGAGT
* *
24671529 AAAAAATTTTGAGGAAATAT
1 AAAAAATTATGA-GAAATAC
24671549 AAAAAATTATGAGAAATAC
1 AAAAAATTATGAGAAATAC
* * *
24671568 AGAAAAGTATAAGAAACTACC
1 AAAAAATTATGAGAAA-TA-C
24671589 AAAAAA
1 AAAAAA
24671595 CTTGAAGAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
19 19 0.50
20 13 0.34
21 6 0.16
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.20
Consensus pattern (19 bp):
AAAAAATTATGAGAAATAC
Found at i:24671679 original size:22 final size:20
Alignment explanation
Indices: 24671654--24671708 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
24671644 AGAGAATACT
24671654 AAAATATACGAGGAACTAAAAA
1 AAAATATACGA--AACTAAAAA
* * *
24671676 AAAACATGCGAAACTATAAA
1 AAAATATACGAAACTAAAAA
*
24671696 AAAATATAAGAAA
1 AAAATATACGAAA
24671709 GTATCAAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
20 18 0.67
22 9 0.33
ACGTcount: A:0.65, C:0.09, G:0.11, T:0.15
Consensus pattern (20 bp):
AAAATATACGAAACTAAAAA
Found at i:24671872 original size:19 final size:19
Alignment explanation
Indices: 24671823--24671874 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
24671813 ACCATACAAA
24671823 AAAATAAAAAAAATATGAG
1 AAAATAAAAAAAATATGAG
** **
24671842 GGAATATTAAAAATATGAG
1 AAAATAAAAAAAATATGAG
24671861 AAAATAACAAAAAA
1 AAAATAA-AAAAAA
24671875 AAATTATGAG
Statistics
Matches: 24, Mismatches: 8, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.69, C:0.02, G:0.12, T:0.17
Consensus pattern (19 bp):
AAAATAAAAAAAATATGAG
Found at i:24671934 original size:19 final size:19
Alignment explanation
Indices: 24671872--24671934 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
24671862 AAATAACAAA
*
24671872 AAAAAATTATGAGAATGTATC
1 AAAAAATTATGA-AA-ATATC
* *
24671893 AAAAAAATAGGAAGAA-ATAC
1 AAAAAATTATGAA-AATAT-C
24671913 AAAAAATTATGAAAATATC
1 AAAAAATTATGAAAATATC
24671932 AAA
1 AAA
24671935 TAACATGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
19 8 0.24
20 15 0.44
21 11 0.32
ACGTcount: A:0.63, C:0.05, G:0.11, T:0.21
Consensus pattern (19 bp):
AAAAAATTATGAAAATATC
Found at i:24675095 original size:20 final size:19
Alignment explanation
Indices: 24675052--24675121 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 19
24675042 ATATGTAAAA
*
24675052 TTTTTATTTTTTATTTTTTAT
1 TTTTTATTTTTTA--TTATAT
*
24675073 TTTTTATTTTTTATTATAC
1 TTTTTATTTTTTATTATAT
24675092 TTTTTAGTTTTTTGA-TATAT
1 TTTTTA-TTTTTT-ATTATAT
*
24675112 TTTCTATTTT
1 TTTTTATTTT
24675122 GGTCAGAAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
19 14 0.33
20 15 0.35
21 14 0.33
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (19 bp):
TTTTTATTTTTTATTATAT
Found at i:24675096 original size:21 final size:21
Alignment explanation
Indices: 24675052--24675104 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
24675042 ATATGTAAAA
**
24675052 TTTTTATTTTTTATTTTTTAT
1 TTTTTATTTTTTATTTACTAT
*
24675073 TTTTTATTTTTTA-TTA-TAC
1 TTTTTATTTTTTATTTACTAT
24675092 TTTTTAGTTTTTT
1 TTTTTA-TTTTTT
24675105 GATATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 8 0.28
20 8 0.28
21 13 0.45
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (21 bp):
TTTTTATTTTTTATTTACTAT
Found at i:24675103 original size:7 final size:7
Alignment explanation
Indices: 24675052--24675087 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
24675042 ATATGTAAAA
24675052 TTTTTAT
1 TTTTTAT
24675059 TTTTTAT
1 TTTTTAT
24675066 TTTTTAT
1 TTTTTAT
24675073 TTTTTAT
1 TTTTTAT
24675080 TTTTTAT
1 TTTTTAT
24675087 T
1 T
24675088 ATACTTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTAT
Found at i:24675114 original size:19 final size:19
Alignment explanation
Indices: 24675052--24675121 Score: 63
Period size: 19 Copynumber: 3.5 Consensus size: 19
24675042 ATATGTAAAA
* *
24675052 TTTTTATTTTTTATTTTTTAT
1 TTTTTATTTTTTA--TTATAC
24675073 TTTTTATTTTTTATTATAC
1 TTTTTATTTTTTATTATAC
24675092 TTTTTAGTTTTTTGA-TATA-
1 TTTTTA-TTTTTT-ATTATAC
24675111 TTTTCTATTTT
1 TTTT-TATTTT
24675122 GGTCAGAAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
19 18 0.41
20 12 0.27
21 14 0.32
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (19 bp):
TTTTTATTTTTTATTATAC
Found at i:24676480 original size:83 final size:83
Alignment explanation
Indices: 24676341--24676506 Score: 332
Period size: 83 Copynumber: 2.0 Consensus size: 83
24676331 GCAAGGGCAA
24676341 AATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTTTGTGGCTCAGGTAGTGACCAC
1 AATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTTTGTGGCTCAGGTAGTGACCAC
24676406 TTTCCAAGAAAGGGGAGC
66 TTTCCAAGAAAGGGGAGC
24676424 AATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTTTGTGGCTCAGGTAGTGACCAC
1 AATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTTTGTGGCTCAGGTAGTGACCAC
24676489 TTTCCAAGAAAGGGGAGC
66 TTTCCAAGAAAGGGGAGC
24676507 GATGGAGTAC
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (83 bp):
AATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTTTGTGGCTCAGGTAGTGACCAC
TTTCCAAGAAAGGGGAGC
Found at i:24677854 original size:9 final size:9
Alignment explanation
Indices: 24677840--24677891 Score: 61
Period size: 11 Copynumber: 5.4 Consensus size: 9
24677830 TGGAAGATGG
24677840 ATAAATAAA
1 ATAAATAAA
24677849 ATAAAT-AA
1 ATAAATAAA
24677857 ATAAATAAA
1 ATAAATAAA
24677866 ATAGAATATAA
1 ATA-AATA-AA
24677877 ATAAGATAAA
1 ATAA-ATAAA
24677887 TATAA
1 -ATAA
24677892 GGCAGGAACG
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.21
9 11 0.29
10 7 0.18
11 12 0.32
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (9 bp):
ATAAATAAA
Found at i:24682289 original size:58 final size:59
Alignment explanation
Indices: 24682191--24682317 Score: 213
Period size: 58 Copynumber: 2.2 Consensus size: 59
24682181 GAGGGTTCGT
* *
24682191 TCAT-AATGTAAGACTTATCTGATCTTTTCAATTGTTAGAA-TTTTTTTCTTGAATCAC
1 TCATGAATTTAAGACTTATCTGATATTTTCAATTGTTAGAATTTTTTTTCTTGAATCAC
24682248 TCATGAATTTAAGACTTATCTGATATTTTCAATTGTTAGAATTTTTTTTTCTTGAATCAC
1 TCATGAATTTAAGACTTATCTGATATTTTCAATTGTTAGAA-TTTTTTTTCTTGAATCAC
24682308 TCATGAATTT
1 TCATGAATTT
24682318 TTCTAGGACA
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
57 4 0.06
58 34 0.52
60 27 0.42
ACGTcount: A:0.28, C:0.13, G:0.10, T:0.49
Consensus pattern (59 bp):
TCATGAATTTAAGACTTATCTGATATTTTCAATTGTTAGAATTTTTTTTCTTGAATCAC
Found at i:24691311 original size:30 final size:30
Alignment explanation
Indices: 24691275--24691337 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
24691265 TTCATGCAGC
24691275 TAGAATTAATTGGAATGAATGAGAGCTGAT
1 TAGAATTAATTGGAATGAATGAGAGCTGAT
24691305 TAGAATTAATTGGAATGAATGAGAGCTGAT
1 TAGAATTAATTGGAATGAATGAGAGCTGAT
24691335 TAG
1 TAG
24691338 CCACATAGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.40, C:0.03, G:0.27, T:0.30
Consensus pattern (30 bp):
TAGAATTAATTGGAATGAATGAGAGCTGAT
Found at i:24695530 original size:50 final size:50
Alignment explanation
Indices: 24695337--24695628 Score: 266
Period size: 50 Copynumber: 5.7 Consensus size: 50
24695327 GGTAAAGTGA
* *
24695337 TCCCATGTAATACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC--GAG---ATGAGAGG
* **
24695393 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGACAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
24695443 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
* * ** * * **
24695493 TCTCC-CGTAAGACCATGTTTGGGACATGGTATGGGCACCGATATGAGAAC
1 TC-CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
* * * * * * * * **
24695543 TTCCATGTAAGACCATATCTGGGATATGACATTGGTA--GTACATGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGATGAGAGG
* *
24695592 TCCCATGTAAGGCCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
24695629 TGTTATTATC
Statistics
Matches: 197, Mismatches: 36, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 38 0.19
50 117 0.59
51 2 0.01
53 3 0.02
55 1 0.01
56 35 0.18
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
Found at i:24715804 original size:50 final size:50
Alignment explanation
Indices: 24715761--24715864 Score: 136
Period size: 50 Copynumber: 2.1 Consensus size: 50
24715751 ACATGGCGTT
** * * *
24715761 GGCACCGAGATGAGATGTCCCCTGTAAGACTATGTCTAGGACATGACATG
1 GGCACCGAGATGAGAACTCCCATGTAAGACCATATCTAGGACATGACATG
* * *
24715811 GGCACCGATATGAGAACTCCCATGTAAGACCATATCTAGGATATGACATT
1 GGCACCGAGATGAGAACTCCCATGTAAGACCATATCTAGGACATGACATG
24715861 GGCA
1 GGCA
24715865 GTACAGGAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (50 bp):
GGCACCGAGATGAGAACTCCCATGTAAGACCATATCTAGGACATGACATG
Found at i:24716141 original size:20 final size:20
Alignment explanation
Indices: 24716116--24716164 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
24716106 TGAGTTATTT
24716116 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
24716136 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
24716156 AAG-AAGCAA
1 AAGTAAGCAA
24716165 AGACCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:24719598 original size:56 final size:52
Alignment explanation
Indices: 24719537--24719673 Score: 161
Period size: 50 Copynumber: 2.6 Consensus size: 52
24719527 GAGACTCCAT
* **
24719537 GTAAGACCATGTCTGGGAAATGGCATTGGCATTATTGAGGTTATGAGAGGTCCCAC
1 GTAAGACCATGTCTGGGACATGGCATTGGCA-TACCGA-G--ATGAGAGGTCCCAC
* *
24719593 GTAAGACCATGTCTGGGACATGGCGTTGG--TACCGAGATGAGAGGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCATTGGCATACCGAGATGAGAGGTCCCAC
* *
24719643 GTAAGACCATGTCCGGGACATGGCATGGGCA
1 GTAAGACCATGTCTGGGACATGGCATTGGCA
24719674 CCTATATGAG
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
50 39 0.55
52 1 0.01
53 4 0.06
56 27 0.38
ACGTcount: A:0.25, C:0.20, G:0.33, T:0.22
Consensus pattern (52 bp):
GTAAGACCATGTCTGGGACATGGCATTGGCATACCGAGATGAGAGGTCCCAC
Found at i:24719683 original size:50 final size:50
Alignment explanation
Indices: 24719578--24719702 Score: 151
Period size: 50 Copynumber: 2.5 Consensus size: 50
24719568 TTATTGAGGT
* * * *
24719578 TATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGTACCGA
1 TATGAGAGGTCCCACGTAAGACCATGTCCGGGACATGGCATGGGCACCGA
* * *
24719628 GATGAGAGGTCCCCCGTAAGACCATGTCCGGGACATGGCATGGGCACCTA
1 TATGAGAGGTCCCACGTAAGACCATGTCCGGGACATGGCATGGGCACCGA
** * *
24719678 TATGAGAACTCTCATGTAAGACCAT
1 TATGAGAGGTCCCACGTAAGACCAT
24719703 ATCTAGGATA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (50 bp):
TATGAGAGGTCCCACGTAAGACCATGTCCGGGACATGGCATGGGCACCGA
Found at i:24720009 original size:20 final size:20
Alignment explanation
Indices: 24719977--24720015 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24719967 TGAGTTATTT
*
24719977 AAGTAAGCAAGTATGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
24719997 AAGTAAG-AGAGTAAGTAAA
1 AAGTAAGCA-AGTAAGTAAA
24720016 GAAGAAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.54, C:0.05, G:0.23, T:0.18
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:24727416 original size:50 final size:53
Alignment explanation
Indices: 24727312--24727447 Score: 161
Period size: 50 Copynumber: 2.6 Consensus size: 53
24727302 GCATGAGACT
**
24727312 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGG-A-TACCGAGG-TATGAGAGGTC
* *
24727368 CTATGTAAGACCATGTCTGGGACATGGCGTTGG-TACCGA-G-ATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGATACCGAGGTATGAGAGGTC
** *
24727418 CCCCGTAAGACCATGTCCGGGACATGGCAT
1 CCATGTAAGACCATGTCTGGGACATGGCAT
24727448 GGGCACCTAT
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
50 35 0.49
52 1 0.01
53 4 0.06
56 31 0.44
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (53 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGATACCGAGGTATGAGAGGTC
Found at i:24727462 original size:50 final size:50
Alignment explanation
Indices: 24727357--24727463 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 50
24727347 TTATTGAGGT
* * * * * *
24727357 TATGAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCGTTGGTACCGA
1 TATGAGAGGTCCCACGTAAGACCATGTCCGGGACATGGCATGGGCACCGA
* * *
24727407 GATGAGAGGTCCCCCGTAAGACCATGTCCGGGACATGGCATGGGCACCTA
1 TATGAGAGGTCCCACGTAAGACCATGTCCGGGACATGGCATGGGCACCGA
24727457 TATGAGA
1 TATGAGA
24727464 ACTCTCAGGT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.21
Consensus pattern (50 bp):
TATGAGAGGTCCCACGTAAGACCATGTCCGGGACATGGCATGGGCACCGA
Found at i:24727788 original size:20 final size:20
Alignment explanation
Indices: 24727756--24727794 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24727746 TGAGTTATTT
*
24727756 AAGTAAGCAAGTATGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
24727776 AAGTAAG-AGAGTAAGTAAA
1 AAGTAAGCA-AGTAAGTAAA
24727795 GAAGAAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.54, C:0.05, G:0.23, T:0.18
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:24738176 original size:16 final size:16
Alignment explanation
Indices: 24738155--24738186 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
24738145 AAAGTGATAG
24738155 CTTATGCTTCCAGACA
1 CTTATGCTTCCAGACA
24738171 CTTATGCTTCCAGACA
1 CTTATGCTTCCAGACA
24738187 GTTAAAGTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.12, T:0.31
Consensus pattern (16 bp):
CTTATGCTTCCAGACA
Found at i:24743324 original size:15 final size:15
Alignment explanation
Indices: 24743306--24743336 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24743296 TGGTTTAAAT
24743306 TTATATATTATCATC
1 TTATATATTATCATC
*
24743321 TTATATATTATTATC
1 TTATATATTATCATC
24743336 T
1 T
24743337 ATGTTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATATATTATCATC
Found at i:24748159 original size:62 final size:62
Alignment explanation
Indices: 24748062--24748235 Score: 303
Period size: 62 Copynumber: 2.8 Consensus size: 62
24748052 TTTTTTTTTT
24748062 GCATTCATGCATTAACATTACATTTCATTACATTCAATAAATTTCCTAAAATCCAAAAATAC
1 GCATTCATGCATTAACATTACATTTCATTACATTCAATAAATTTCCTAAAATCCAAAAATAC
24748124 GCATTCATGCATTAACATTACATTTCATTACATTCAATAAATTTCCTAAAATCCAAAAATAC
1 GCATTCATGCATTAACATTACATTTCATTACATTCAATAAATTTCCTAAAATCCAAAAATAC
* * * * *
24748186 GGATTCATGCATCAACATTACTTTTCATTGCATACAATAAATTTCCTAAA
1 GCATTCATGCATTAACATTACATTTCATTACATTCAATAAATTTCCTAAA
24748236 GTCTAAAAGT
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 107 1.00
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (62 bp):
GCATTCATGCATTAACATTACATTTCATTACATTCAATAAATTTCCTAAAATCCAAAAATAC
Found at i:24749592 original size:14 final size:13
Alignment explanation
Indices: 24749538--24749605 Score: 57
Period size: 14 Copynumber: 5.1 Consensus size: 13
24749528 CAGTGGAGGC
*
24749538 AAAAAAAAGAACA
1 AAAAAAAAAAACA
24749551 AAAAAAATAAAA-A
1 AAAAAAA-AAAACA
* **
24749564 AATAAAAAACCCA
1 AAAAAAAAAAACA
24749577 AATAAAAAAAAACA
1 AA-AAAAAAAAACA
*
24749591 AAAGCAAAAAAACA
1 AAA-AAAAAAAACA
24749605 A
1 A
24749606 GAGGAAAAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
12 2 0.05
13 18 0.42
14 23 0.53
ACGTcount: A:0.82, C:0.10, G:0.03, T:0.04
Consensus pattern (13 bp):
AAAAAAAAAAACA
Found at i:24749593 original size:21 final size:20
Alignment explanation
Indices: 24749539--24749593 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
24749529 AGTGGAGGCA
24749539 AAAAAAAGAACAAAAAAAAT
1 AAAAAAAGAACAAAAAAAAT
* *
24749559 AAAAAAATAA-AAAACCCAAAT
1 AAAAAAAGAACAAAA--AAAAT
24749580 AAAAAAA-AACAAAA
1 AAAAAAAGAACAAAA
24749594 GCAAAAAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 4 0.13
20 11 0.37
21 15 0.50
ACGTcount: A:0.84, C:0.09, G:0.02, T:0.05
Consensus pattern (20 bp):
AAAAAAAGAACAAAAAAAAT
Found at i:24749613 original size:14 final size:14
Alignment explanation
Indices: 24749582--24749617 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
24749572 ACCCAAATAA
24749582 AAAAAAACAAAAGC
1 AAAAAAACAAAAGC
* *
24749596 AAAAAAACAAGAGG
1 AAAAAAACAAAAGC
24749610 AAAAAAAC
1 AAAAAAAC
24749618 TCTACTGGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.78, C:0.11, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAAAACAAAAGC
Found at i:24750040 original size:6 final size:6
Alignment explanation
Indices: 24750025--24750087 Score: 58
Period size: 6 Copynumber: 10.2 Consensus size: 6
24750015 CACTTCACTT
*
24750025 GAAAAA -AAAAA GAAAAA TAAAAAA TGAAAAA -AGAAAA GAAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA -GAAAAA -GAAAAA GA-AAAA G-AAAAA GAAAAA
*
24750075 CAAAAA GAAAAA G
1 GAAAAA GAAAAA G
24750088 GAGAGGCCAA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
5 6 0.12
6 25 0.52
7 16 0.33
8 1 0.02
ACGTcount: A:0.83, C:0.02, G:0.13, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:24750046 original size:12 final size:11
Alignment explanation
Indices: 24750025--24750086 Score: 72
Period size: 12 Copynumber: 5.5 Consensus size: 11
24750015 CACTTCACTT
24750025 GAAAAAAAAAA
1 GAAAAAAAAAA
*
24750036 GAAAAATAAAA
1 GAAAAAAAAAA
**
24750047 -AATGAAAAAA
1 GAAAAAAAAAA
24750057 GAAAAGAAAAAA
1 GAAAA-AAAAAA
24750069 GAAAAACAAAAA
1 GAAAAA-AAAAA
24750081 GAAAAA
1 GAAAAA
24750087 GGAGAGGCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
10 7 0.17
11 13 0.31
12 22 0.52
ACGTcount: A:0.84, C:0.02, G:0.11, T:0.03
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:24750047 original size:7 final size:7
Alignment explanation
Indices: 24750026--24750086 Score: 53
Period size: 7 Copynumber: 9.4 Consensus size: 7
24750016 ACTTCACTTG
24750026 AAAA-AA
1 AAAAGAA
24750032 AAAAGAA
1 AAAAGAA
24750039 AAATA-AA
1 AAA-AGAA
*
24750046 AAATGAA
1 AAAAGAA
24750053 AAAAG--
1 AAAAGAA
24750058 AAAAGAA
1 AAAAGAA
24750065 AAAAG-A
1 AAAAGAA
*
24750071 AAAA-CA
1 AAAAGAA
24750077 AAAAGAA
1 AAAAGAA
24750084 AAA
1 AAA
24750087 GGAGAGGCCA
Statistics
Matches: 45, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
5 5 0.11
6 14 0.31
7 25 0.56
8 1 0.02
ACGTcount: A:0.85, C:0.02, G:0.10, T:0.03
Consensus pattern (7 bp):
AAAAGAA
Found at i:24750074 original size:19 final size:19
Alignment explanation
Indices: 24750026--24750086 Score: 72
Period size: 19 Copynumber: 3.2 Consensus size: 19
24750016 ACTTCACTTG
*
24750026 AAAA-AAAAAAGAAAAATAA
1 AAAAGAAAAAAG-AAAAGAA
24750045 AAAATGAAAAAAGAAAAGAA
1 AAAA-GAAAAAAGAAAAGAA
24750065 AAAAGAAAAACA-AAAAGAA
1 AAAAGAAAAA-AGAAAAGAA
24750084 AAA
1 AAA
24750087 GGAGAGGCCA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
19 20 0.53
20 11 0.29
21 7 0.18
ACGTcount: A:0.85, C:0.02, G:0.10, T:0.03
Consensus pattern (19 bp):
AAAAGAAAAAAGAAAAGAA
Found at i:24751274 original size:132 final size:132
Alignment explanation
Indices: 24751037--24751699 Score: 1101
Period size: 132 Copynumber: 5.0 Consensus size: 132
24751027 TGGAGTCATT
* *
24751037 AAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTGTCTTCCTA
1 AAAGTAGATCTTGTCTTCATGTTTTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
* * *
24751102 TATTGGTAGGAAGTGGATTGAATATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGAAAATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAA
24751167 AG
131 AG
24751169 AAAGTAGATCTTGTCTTCATGTTTTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
1 AAAGTAGATCTTGTCTTCATGTTTTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
* * * *
24751234 TATTGGTAGGAAGTGGATCGAATATGCAGATCTTGTCTTCCCAGACTGGTGGCAAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGAAAATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAA
24751299 AG
131 AG
*
24751301 AAAGTAGATCTTGTCTTCATGTTTTGGCGTGAAGTGGATCGAAGATAGCAGGTCCTGTCTTCCTA
1 AAAGTAGATCTTGTCTTCATGTTTTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
* * *
24751366 TATTGGTAGGAAGTGGATCAAAAATGCATATCTTATCTTCCCATACTGGTGGCGAAGTAGATCAA
66 TATTGGTAGGAAGTGGATCGAAAATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAA
24751431 AG
131 AG
* * * *
24751433 AAAGCAGATCTTGTCTTCATGTTTTGACGTGAAGTGGATCGAAGATAGCAGATCCTGTCTTCCTA
1 AAAGTAGATCTTGTCTTCATGTTTTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
24751498 TATTGGTAGGAAGTGGATCGAAAATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAA
66 TATTGGTAGGAAGTGGATCGAAAATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAA
24751563 AG
131 AG
* * * * *
24751565 AAAGCATATCTTGTCTTCATGTGTTGGCGTGAAGTAGATCAAAGATAGCAGGCCCTGTCTTCCTA
1 AAAGTAGATCTTGTCTTCATGTTTTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
* * *
24751630 TATTGGTGGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAA
66 TATTGGTAGGAAGTGGATCGAAAATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAA
24751695 AG
131 AG
24751697 AAA
1 AAA
24751700 ACAAATCTTA
Statistics
Matches: 502, Mismatches: 29, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 502 1.00
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
AAAGTAGATCTTGTCTTCATGTTTTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTA
TATTGGTAGGAAGTGGATCGAAAATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAA
AG
Found at i:24751879 original size:50 final size:50
Alignment explanation
Indices: 24751767--24752448 Score: 335
Period size: 50 Copynumber: 13.7 Consensus size: 50
24751757 ATGGTGATGT
* * * * * * **
24751767 AGTGGAACGGATTAAAGCTACGACGGCAAATCTTGCTTCCCTGATATTGC
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTTCCTTGGCATTGC
* ** * ** *
24751817 ATTTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTTCTTGGCGA-TGC
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTTCCTTGGC-ATTGC
* * * * *
24751867 AGTGGATCAGATTGAAGCTACAACGGCGAATCTT-GTTCCTCGACATTGT
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTTCCTTGGCATTGC
* ** * * * * * *
24751916 AATTAAAGAGATTAAAGCCACAACGGCGAATCTCACTTCCCTT-GCAGTAC
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTT-CCTTGGCATTGC
* * * * * * **
24751966 AGTGCAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTGC
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTTCCTTGGCATTGC
* ** * * * * *
24752016 AATTAAAAAGATTGAAGCTGCAACGGTGAATCTTACTTTCAT-G-ATGATGC
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTTCCTTGGCAT--TGC
* * * * * *
24752066 AGTGGATCAGATTGAAGCTACAACGACGAATCTCACTT-TTCTGGCAGTAC
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTTCCT-TGGCATTGC
* * * * * **
24752116 AGTGTAGCAGATTAAAGCTACGACGGCGAATCTTTCTTCCTTGATATTGC
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTTCCTTGGCATTGC
* ** * * *
24752166 AATTTAAAAGATTGAAG-T-CGTAACGGTGAATCTTACTTTCTTGGCGA-TGC
1 AGTGGAACAGATTGAAGCTAC--AACGGCGAATCTTACTTCCTTGGC-ATTGC
* * ** *
24752216 AGTGGAGCAGATTGAAGCTACAATGGCGAATCTTA-TTCCCCGACATTGC
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTTCCTTGGCATTGC
* ** * * * * *
24752265 AATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTT-CTCTGGCAGTAC
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTTCCT-TGGCATTGC
* * * * * * **
24752315 AGTGCAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTGC
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTTCCTTGGCATTGC
* ** * **
24752365 AATTTAAGAGATTGAAGCCGCAACGGCGAATCTTACTTCCTTGGCGA-TGC
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTTCCTTGGC-ATTGC
* * * *
24752415 AGTGGATCAGATTAAAGCTACGACGGCAAATCTT
1 AGTGGAACAGATTGAAGCTACAACGGCGAATCTT
24752449 GTTCCCCGAC
Statistics
Matches: 445, Mismatches: 166, Indels: 42
0.68 0.25 0.06
Matches are distributed among these distances:
48 5 0.01
49 74 0.17
50 354 0.80
51 10 0.02
52 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (50 bp):
AGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTTCCTTGGCATTGC
Found at i:24752069 original size:100 final size:99
Alignment explanation
Indices: 24751760--24752098 Score: 387
Period size: 100 Copynumber: 3.4 Consensus size: 99
24751750 ATCTTCCATG
* * * * * *
24751760 GTGATGTAGTGGAACGGATTAAAGCTACGACGGCAAATCTTGCTTCCCTGATATTGCATTTAAAA
1 GTGATGCAGTGGATCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAA
*
24751825 AGATTGAAGCCGCAACGGCGAATCTTACTTTCTT
66 AGATTGAAGCCGCAACGGCGAATCTTACTTTCAT
* * * *
24751859 GGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTG-TT-CCTCGACATTGTAATTAA
1 -GTGATGCAGTGGATCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCT-GATATTGCAATTAA
* * * * * *
24751922 AGAGATTAAAGCCACAACGGCGAATCTCACTTCCCT
64 AAAGATTGAAGCCGCAACGGCGAATCTTACTTTCAT
* * * *
24751958 -TGCAGTACAGTGCAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTGCAATTAA
1 GTG-A-TGCAGTGGATCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGATATTGCAATTAA
* *
24752022 AAAGATTGAAGCTGCAACGGTGAATCTTACTTTCAT
64 AAAGATTGAAGCCGCAACGGCGAATCTTACTTTCAT
* *
24752058 GATGATGCAGTGGATCAGATTGAAGCTACAACGACGAATCT
1 G-TGATGCAGTGGATCAGATTAAAGCTACAACGGCGAATCT
24752099 CACTTTTCTG
Statistics
Matches: 194, Mismatches: 38, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
97 1 0.01
98 4 0.02
99 76 0.39
100 107 0.55
101 4 0.02
102 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (99 bp):
GTGATGCAGTGGATCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAA
AGATTGAAGCCGCAACGGCGAATCTTACTTTCAT
Found at i:24752127 original size:150 final size:150
Alignment explanation
Indices: 24751924--24752248 Score: 490
Period size: 150 Copynumber: 2.2 Consensus size: 150
24751914 GTAATTAAAG
* * *
24751924 AGATTAAAGCCACAACGGCGAATCTCACTTCCCTTGCAGTACAGTGCAGCAGATTAAAGCTACGA
1 AGATTGAAGCTACAACGGCGAATCTCACTTCCCTGGCAGTACAGTGCAGCAGATTAAAGCTACGA
24751989 CGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAG-CTGCAACGGTGAATCTTACT
66 CGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGTC-GCAACGGTGAATCTTACT
* *
24752053 TTCATGATGATGCAGTGGATC
130 TTCATGACGATGCAGTGGAGC
* ** *
24752074 AGATTGAAGCTACAACGACGAATCTCACTTTTCTGGCAGTACAGTGTAGCAGATTAAAGCTACGA
1 AGATTGAAGCTACAACGGCGAATCTCACTTCCCTGGCAGTACAGTGCAGCAGATTAAAGCTACGA
* * * *
24752139 CGGCGAATCTTTCTTCCTTGATATTGCAATTTAAAAGATTGAAGTCGTAACGGTGAATCTTACTT
66 CGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGTCGCAACGGTGAATCTTACTT
* *
24752204 TCTTGGCGATGCAGTGGAGC
131 TCATGACGATGCAGTGGAGC
*
24752224 AGATTGAAGCTACAATGGCGAATCT
1 AGATTGAAGCTACAACGGCGAATCT
24752249 TATTCCCCGA
Statistics
Matches: 157, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
150 156 0.99
151 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (150 bp):
AGATTGAAGCTACAACGGCGAATCTCACTTCCCTGGCAGTACAGTGCAGCAGATTAAAGCTACGA
CGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGTCGCAACGGTGAATCTTACTT
TCATGACGATGCAGTGGAGC
Found at i:24752178 original size:100 final size:100
Alignment explanation
Indices: 24752074--24752990 Score: 921
Period size: 100 Copynumber: 9.3 Consensus size: 100
24752064 GCAGTGGATC
* * *
24752074 AGATTGAAGCTACAACGACGAATCTCACTTT-TCTGGCAGTACAGTGTAGCAGATTAAAGCTACG
1 AGATTGAAGCCACAACGGCGAATCTCACTTTCT-TGGCAGTACAGTGGAGCAGATTAAAGCTACG
* ** *
24752138 ACGGCGAATCTTTCTTCCTTGATATTGCAATTTAAA
65 ACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
* ** * * * * *
24752174 AGATTGAAGTCGTAACGGTGAATCTTACTTTCTTGGC-GATGCAGTGGAGCAGATTGAAGCTACA
1 AGATTGAAGCCACAACGGCGAATCTCACTTTCTTGGCAG-TACAGTGGAGCAGATTAAAGCTACG
* *
24752238 ATGGCGAATCTT-ATTCCCCGACATTGCAA-TTAAA
65 ACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
*
24752272 GAGATTGAAGCCACAACGGCGAATCTCAC-TTCTCTGGCAGTACAGTGCAGCAGATTAAAGCTAC
1 -AGATTGAAGCCACAACGGCGAATCTCACTTTCT-TGGCAGTACAGTGGAGCAGATTAAAGCTAC
* * *
24752336 GACGGCGAATCTTGCTTCCCTGATATTGCAATTTAAG
64 GACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
* * * * *
24752373 AGATTGAAGCCGCAACGGCGAATCTTACTTCCTTGGC-GATGCAGTGGATCAGATTAAAGCTACG
1 AGATTGAAGCCACAACGGCGAATCTCACTTTCTTGGCAG-TACAGTGGAGCAGATTAAAGCTACG
*
24752437 ACGGCAAATCTTG-TTCCCCGACATTGC--------
65 ACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
* * * *
24752464 A-ATTGAAGCCACAACGGTGAAGCTCAC-TTCTCTGGTAGTACAGTGCAGCAGATTAAAGCTACG
1 AGATTGAAGCCACAACGGCGAATCTCACTTTCT-TGGCAGTACAGTGGAGCAGATTAAAGCTACG
* ** *
24752527 ACGGTGAATCTTGCTTCCCTAATATTGCAATTTAAA
65 ACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
* * * * * * *
24752563 AGATTGAAGCCGCAATGGCGAATCTTACTTTCTTGGC-GATGCAGTGGATCAGATTGAAGCTACA
1 AGATTGAAGCCACAACGGCGAATCTCACTTTCTTGGCAG-TACAGTGGAGCAGATTAAAGCTACG
24752627 ACGGCGAATCTTG-TTCCCCGACATTGCAA-TTAAA
65 ACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
* * *
24752661 GAGATTGAAGCCACAACGGCAAATCTCAC-TTCTCTGGCAGTACAGTGTAGCAAATTAAAGCTAC
1 -AGATTGAAGCCACAACGGCGAATCTCACTTTCT-TGGCAGTACAGTGGAGCAGATTAAAGCTAC
24752725 GACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
64 GACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
* * * * * ** *
24752762 ATATTGAAGCCGCAACGGTGAATCTTACTTCCTTGGTGGTGCAGTAGG-GCAGATTAAAGCTACG
1 AGATTGAAGCCACAACGGCGAATCTCACTTTCTTGGCAGTACAGT-GGAGCAGATTAAAGCTACG
* *
24752826 ACGACAAATCTTGCTTCCCCGACATTGCAATTTAAA
65 ACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
* * * * * ** * * * *
24752862 ATATTGAAGCCGCAACGGTGAATCTTACTTCCTTGGTGGTGCAGTGG-GACTGATTGAAGCTACA
1 AGATTGAAGCCACAACGGCGAATCTCACTTTCTTGGCAGTACAGTGGAG-CAGATTAAAGCTACG
* * *
24752926 ACAGTGAATCTTG-TTCCCCAACATTGCAA-TTAAA
65 ACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
*
24752960 GAGATTGAAGCCACAACGGTGAATCTCACTT
1 -AGATTGAAGCCACAACGGCGAATCTCACTT
24752991 CTCCCTAAGT
Statistics
Matches: 683, Mismatches: 102, Indels: 65
0.80 0.12 0.08
Matches are distributed among these distances:
89 3 0.00
90 58 0.08
91 13 0.02
98 23 0.03
99 206 0.30
100 359 0.53
101 21 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (100 bp):
AGATTGAAGCCACAACGGCGAATCTCACTTTCTTGGCAGTACAGTGGAGCAGATTAAAGCTACGA
CGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
Found at i:24752282 original size:199 final size:198
Alignment explanation
Indices: 24752074--24752991 Score: 1160
Period size: 199 Copynumber: 4.7 Consensus size: 198
24752064 GCAGTGGATC
* * * *
24752074 AGATTGAAGCTACAACGACGAATCTCACTTTTCTGGCAGTACAGTGTAGCAGATTAAAGCTACGA
1 AGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTGCAGCAGATTAAAGCTACGA
* * * * *
24752139 CGGCGAATCTTTCTTCCTTGATATTGCAATTTAAAAGATTGAAGTCGTAACGGTGAATCTTACTT
66 CGGCGAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTT
* * * * *
24752204 TCTTGGCGATGCAGTGGAGCAGATTGAAGCTACAATGGCGAATCTTATTCCCCGACATTGCAATT
131 CCTTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCAAATCTTGTTCCCCGACATTGCAATT
24752269 AAA
196 AAA
24752272 GAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTGCAGCAGATTAAAGCTACG
1 -AGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTGCAGCAGATTAAAGCTACG
*
24752337 ACGGCGAATCTTGCTTCCCTGATATTGCAATTTAAGAGATTGAAGCCGCAACGGCGAATCTTACT
65 ACGGCGAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACT
* *
24752402 TCCTTGGCGATGCAGTGGATCAGATTAAAGCTACGACGGCAAATCTTGTTCCCCGACATTGC---
130 TCCTTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCAAATCTTGTTCCCCGACATTGCAAT
24752464 ----
195 TAAA
* * *
24752464 A-ATTGAAGCCACAACGGTGAAGCTCACTTCTCTGGTAGTACAGTGCAGCAGATTAAAGCTACGA
1 AGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTGCAGCAGATTAAAGCTACGA
* * *
24752528 CGGTGAATCTTGCTTCCCTAATATTGCAATTTAAAAGATTGAAGCCGCAATGGCGAATCTTACTT
66 CGGCGAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTT
* * * *
24752593 TCTTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATT
131 CCTTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCAAATCTTGTTCCCCGACATTGCAATT
24752658 AAA
196 AAA
* * *
24752661 GAGATTGAAGCCACAACGGCAAATCTCACTTCTCTGGCAGTACAGTGTAGCAAATTAAAGCTACG
1 -AGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTGCAGCAGATTAAAGCTACG
* * * *
24752726 ACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAATATTGAAGCCGCAACGGTGAATCTTACT
65 ACGGCGAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACT
* * * *
24752791 TCCTTGGTGGTGCAGTAGG-GCAGATTAAAGCTACGACGACAAATCTTGCTTCCCCGACATTGCA
130 TCCTTGGCGATGCAGT-GGAGCAGATTAAAGCTACAACGGCAAATCTTG-TTCCCCGACATTGCA
24752855 ATTTAAA
193 A-TTAAA
* * * * ** * * * *
24752862 ATATTGAAGCCGCAACGGTGAATCTTACTTC-CTTGGTGGTGCAGTG-GGACTGATTGAAGCTAC
1 AGATTGAAGCCACAACGGCGAATCTCACTTCTC-TGGCAGTACAGTGCAG-CAGATTAAAGCTAC
* * * ** * * * *
24752925 AACAGTGAATCTTG-TTCCCCAACATTGCAA-TTAAAGAGATTGAAGCCACAACGGTGAATCTCA
64 GACGGCGAATCTTGCTTCCCTGATATTGCAATTTAAA-AGATTGAAGCCGCAACGGCGAATCTTA
24752988 CTTC
128 CTTC
24752992 TCCCTAAGTA
Statistics
Matches: 636, Mismatches: 68, Indels: 30
0.87 0.09 0.04
Matches are distributed among these distances:
190 178 0.28
191 1 0.00
198 6 0.01
199 370 0.58
200 76 0.12
201 5 0.01
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (198 bp):
AGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTGCAGCAGATTAAAGCTACGA
CGGCGAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTT
CCTTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCAAATCTTGTTCCCCGACATTGCAATT
AAA
Found at i:24752416 original size:349 final size:349
Alignment explanation
Indices: 24751776--24752435 Score: 1097
Period size: 349 Copynumber: 1.9 Consensus size: 349
24751766 TAGTGGAACG
24751776 GATTAAAGCTACGACGGCAAATCTTGCTTCCCTGATATTGCATTTAAAAAGATTGAAGCCGCAAC
1 GATTAAAGCTACGACGGCAAATCTTGCTTCCCTGATATTGCATTTAAAAAGATTGAAGCCGCAAC
* *
24751841 GGCGAATCTTACTTTCTTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCC
66 GGCGAATCTTACTTTCTTGGCGATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTATTCC
* * *
24751906 TCGACATTGTAATTAAAGAGATTAAAGCCACAACGGCGAATCTCACTTCCCTTGCAGTACAGTGC
131 CCGACATTGCAATTAAAGAGATTAAAGCCACAACGGCGAATCTCACTTCCCTGGCAGTACAGTGC
*
24751971 AGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGCTG
196 AGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGCCG
* * * *
24752036 CAACGGTGAATCTTACTTTCATGATGATGCAGTGGATCAGATTGAAGCTACAACGACGAATCTCA
261 CAACGGCGAATCTTACTTCCATGACGATGCAGTGGATCAGATTAAAGCTACAACGACGAATCTCA
24752101 CTTTTCTGGCAGTACAGTGTAGCA
326 CTTTTCTGGCAGTACAGTGTAGCA
* * * * *
24752125 GATTAAAGCTACGACGGCGAATCTTTCTTCCTTGATATTGCAATTT-AAAAGATTGAAGTCGTAA
1 GATTAAAGCTACGACGGCAAATCTTGCTTCCCTGATATTGC-ATTTAAAAAGATTGAAGCCGCAA
* *
24752189 CGGTGAATCTTACTTTCTTGGCGATGCAGTGGAGCAGATTGAAGCTACAATGGCGAATCTTATTC
65 CGGCGAATCTTACTTTCTTGGCGATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTATTC
* *
24752254 CCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTG
130 CCCGACATTGCAATTAAAGAGATTAAAGCCACAACGGCGAATCTCACTTCCCTGGCAGTACAGTG
* *
24752319 CAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTGCAATTTAAGAGATTGAAGCC
195 CAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGCC
* *
24752384 GCAACGGCGAATCTTACTTCCTTGGCGATGCAGTGGATCAGATTAAAGCTAC
260 GCAACGGCGAATCTTACTTCCATGACGATGCAGTGGATCAGATTAAAGCTAC
24752436 GACGGCAAAT
Statistics
Matches: 287, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
349 283 0.99
350 4 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (349 bp):
GATTAAAGCTACGACGGCAAATCTTGCTTCCCTGATATTGCATTTAAAAAGATTGAAGCCGCAAC
GGCGAATCTTACTTTCTTGGCGATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTATTCC
CCGACATTGCAATTAAAGAGATTAAAGCCACAACGGCGAATCTCACTTCCCTGGCAGTACAGTGC
AGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGATATTGCAATTAAAAAGATTGAAGCCG
CAACGGCGAATCTTACTTCCATGACGATGCAGTGGATCAGATTAAAGCTACAACGACGAATCTCA
CTTTTCTGGCAGTACAGTGTAGCA
Found at i:24752556 original size:389 final size:390
Alignment explanation
Indices: 24752076--24752857 Score: 1271
Period size: 389 Copynumber: 2.0 Consensus size: 390
24752066 AGTGGATCAG
* * * *
24752076 ATTGAAGCTACAACGACGAATCTCACTTTTCTGGCAGTACAGTGTAGCAGATTAAAGCTACGACG
1 ATTGAAGCCACAACGACGAAGCTCACTTCTCTGGCAGTACAGTGCAGCAGATTAAAGCTACGACG
* * * * * *
24752141 GCGAATCTTTCTTCCTTGATATTGCAATTTAAAAGATTGAAGTCGTAACGGTGAATCTTACTTTC
66 GCGAATCTTGCTTCCCTAATATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTTC
*
24752206 TTGGCGATGCAGTGGAGCAGATTGAAGCTACAATGGCGAATCTTATTCCCCGACATTGCAATTAA
131 TTGGCGATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTATTCCCCGACATTGCAATTAA
* *
24752271 AGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAGTACAGTGCAGCAGATTAAAGCTAC
196 AGAGATTGAAGCCACAACGGCAAATCTCACTTCTCTGGCAGTACAGTGCAGCAAATTAAAGCTAC
* * *
24752336 GACGGCGAATCTTGCTTCCCTGATATTGCAATTTAAGAGATTGAAGCCGCAACGGCGAATCTTAC
261 GACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTAC
* *
24752401 TTCCTTGGCGATGCAGT-GGATCAGATTAAAGCTACGACGGCAAATCTTG-TTCCCCGACATTGC
326 TTCCTTGGCGATGCAGTAGG-GCAGATTAAAGCTACGACGACAAATCTTGCTTCCCCGACATTGC
24752464 A
390 A
** *
24752465 ATTGAAGCCACAACGGTGAAGCTCACTTCTCTGGTAGTACAGTGCAGCAGATTAAAGCTACGACG
1 ATTGAAGCCACAACGACGAAGCTCACTTCTCTGGCAGTACAGTGCAGCAGATTAAAGCTACGACG
* *
24752530 GTGAATCTTGCTTCCCTAATATTGCAATTTAAAAGATTGAAGCCGCAATGGCGAATCTTACTTTC
66 GCGAATCTTGCTTCCCTAATATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTTC
* *
24752595 TTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTAA
131 TTGGCGATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTATTCCCCGACATTGCAATTAA
*
24752660 AGAGATTGAAGCCACAACGGCAAATCTCACTTCTCTGGCAGTACAGTGTAGCAAATTAAAGCTAC
196 AGAGATTGAAGCCACAACGGCAAATCTCACTTCTCTGGCAGTACAGTGCAGCAAATTAAAGCTAC
* *
24752725 GACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAATATTGAAGCCGCAACGGTGAATCTTAC
261 GACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTAC
* *
24752790 TTCCTTGGTGGTGCAGTAGGGCAGATTAAAGCTACGACGACAAATCTTGCTTCCCCGACATTGCA
326 TTCCTTGGCGATGCAGTAGGGCAGATTAAAGCTACGACGACAAATCTTGCTTCCCCGACATTGCA
24752855 ATT
1 ATT
24752858 TAAAATATTG
Statistics
Matches: 361, Mismatches: 30, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
389 341 0.94
390 20 0.06
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (390 bp):
ATTGAAGCCACAACGACGAAGCTCACTTCTCTGGCAGTACAGTGCAGCAGATTAAAGCTACGACG
GCGAATCTTGCTTCCCTAATATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTTC
TTGGCGATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTATTCCCCGACATTGCAATTAA
AGAGATTGAAGCCACAACGGCAAATCTCACTTCTCTGGCAGTACAGTGCAGCAAATTAAAGCTAC
GACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTAC
TTCCTTGGCGATGCAGTAGGGCAGATTAAAGCTACGACGACAAATCTTGCTTCCCCGACATTGCA
Found at i:24752886 original size:50 final size:50
Alignment explanation
Indices: 24752832--24752991 Score: 81
Period size: 50 Copynumber: 3.2 Consensus size: 50
24752822 TACGACGACA
* * * * *
24752832 AATCTTGCTTCCCCGACATTGCAATTTAAAATATTGAAGCCGCAACGGTG
1 AATCTTACTTCCCTGACATTGCAATTTAAAAGATTGAAGCCACAACGGCG
* **** * *** ** * * *
24752882 AATCTTACTTCCTTGGTGGTGCAGTGGGACTGATTGAAGCTACAACAGTG
1 AATCTTACTTCCCTGACATTGCAATTTAAAAGATTGAAGCCACAACGGCG
* ** *
24752932 AATCTT-GTTCCCCAACATTGCAA-TTAAAGAGATTGAAGCCACAACGGTG
1 AATCTTACTTCCCTGACATTGCAATTTAAA-AGATTGAAGCCACAACGGCG
*
24752981 AATCTCACTTC
1 AATCTTACTTC
24752992 TCCCTAAGTA
Statistics
Matches: 73, Mismatches: 35, Indels: 4
0.65 0.31 0.04
Matches are distributed among these distances:
48 1 0.01
49 30 0.41
50 42 0.58
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (50 bp):
AATCTTACTTCCCTGACATTGCAATTTAAAAGATTGAAGCCACAACGGCG
Found at i:24754618 original size:15 final size:15
Alignment explanation
Indices: 24754600--24754630 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24754590 TGGTTTAAAT
24754600 TTATATATTATCATC
1 TTATATATTATCATC
*
24754615 TTATATATTATTATC
1 TTATATATTATCATC
24754630 T
1 T
24754631 ATGTTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATATATTATCATC
Found at i:24755538 original size:107 final size:107
Alignment explanation
Indices: 24755352--24755669 Score: 474
Period size: 107 Copynumber: 3.0 Consensus size: 107
24755342 AGTTTTTTCT
* * * *
24755352 AAATAAGGTAATATTTCGCGTTTGGAAAATCAAGAAAACGCGCCCTAACGTGCTGGGTTTCGATT
1 AAATAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATT
* *
24755417 TCTCGTTCGACCAAATAGCCAAATACCCTTTTTAAACTTTTA
66 TCTCGTTTGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
* * * * * *
24755459 AAATAAGGCAGTATTTCGCGTTTGGAAAATCGAGGAAATGTGCCCCAATGTGTTGGGTTTCGACT
1 AAATAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATT
*
24755524 TCTCGTTTGACCAAATAGCCAAATATTCTTTTTAAACTTTTA
66 TCTCGTTTGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
*
24755566 AAATAAGGCAATACTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATT
1 AAATAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATT
* * * *
24755631 TCTTGTTTGACTAAATAGCCAAATATCCTCTTAAAACTT
66 TCTCGTTTGACCAAATAGCCAAATATCCTTTTTAAACTT
24755670 CAAAGTATGG
Statistics
Matches: 186, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
107 186 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32
Consensus pattern (107 bp):
AAATAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATT
TCTCGTTTGACCAAATAGCCAAATATCCTTTTTAAACTTTTA
Found at i:24759507 original size:799 final size:798
Alignment explanation
Indices: 24756126--24759906 Score: 5999
Period size: 797 Copynumber: 4.7 Consensus size: 798
24756116 TCAACATTGA
* * *
24756126 CAATAATGGATAAAATACATTTATGTCATGGGTGAATGGTTAAACACTTGGGTTAGTACAAATTT
1 CAATAATGGATAAAATACATTTATGTCATGGGTGAATGGTTAAACACTTGGGTTAGTATAAAGTG
* *
24756191 TATATTTAGTAAGGTTTGTTGGAAAAGAAATAACATGTTTTGGTTTATATCGAATAGAGAAAATT
66 TATATTTAGTAAGGTTTGTTGGAAAAGAAATAACAGGTTTTGGTTTATATCGAACAGAGAAAATT
* * * *
24756256 TGTACCATCTTTGTGGCTAATTTTGTTAGCTGTATAGGAGATGAATGGGTAATGTATGTATGTGA
131 TGTACTATCTTTGTGGCTAATTTTGTTAGGTGTATGGGAGATGAATGGTTAATGTATGTATGTGA
*
24756321 CAATTACCTTACCAGATAGTGAACGAACTATTGATATACTAAAATAGTTAAAAAGGAAAATTTGA
196 CAATTAGCTTACCAGATAGT----GAACTATTGATATACTAAAATAGTTAAAAAGGAAAATTTGA
*
24756386 CGATATGAGAATATGTAATGATACAGATCAATTTAGGTACTCTGGACGAATTCAACAAGTAAGTG
257 CGATATGAGAATATGTAATGATACGGATCAATTTAGGTACTCTGGACGAATTCAACAAGTAAGTG
*
24756451 AAAATTTGTAAATTCATAAGACGAGGAAGTGAAAGATTGTGACTATATTCAGCCAAGTAAACCCT
322 AAAATTTGTAAATTCATACGACGAGGAAGTGAAAGATTGTGACTATATTCAGCCAAGTAAACCCT
*
24756516 AATTAACAACCCAATAATAACAATTGGAAAGTTTTAATTTTGGATAAAATTTTATAACTCAGATT
387 AATTAACGACCCAATAATAACAATTGGAAAGTTTTAATTTTGGATAAAATTTTATAACTCAGATT
* * * *
24756581 -A-ATGTCTATAAGTGTATTTATT-TGGTAATGCCTCGTACCCTATTCTAGCATTGATACGGATA
452 AATATGTCTATAAGTGTATTTATTCTGGTAATGCCTCGTACCCTATTCCAGCGTTGATATGGGTA
*
24756643 AGAGGTGTTACAATGTGACATCACCAGATTCCGTCCTAATGTTTAGGCCGGGTTTGGGGTGTTAC
517 AGAGGTGTTACAATGTGACATCACCAGATTCCGCCCTAATGTTTAGGCCGGGTTTGGGGTGTTAC
* *
24756708 ATTTAGTGGTTCGGTTTAGGTGATGGAAATATCACAAACATTTGTCTTTGATATGTGATGATCAT
582 ATTTAGTGGTTCAGTTTAGGTGATGGAAATGTCACAAACATTTGTCTTTGATATGTGATGATCAT
* *
24756773 GTAATGCCATGTAAATTTGTTTAATTGTGTGGTTTAAAATGTATCTATATTTTGTTATATAACTT
647 GTAATGCCATGAAAATTTGTTTAATTGTGTGGTTTAAAATGTATCTATATTTTGTTATATAAATT
*
24756838 ATTTTGTAATCTATTTGACAAATGATAAAAATTAATTCGGTTACTATCTGAGGTGAATTATGATT
712 ATTTTGTAATCTATTTGACAAATGATAAAAATTAATTCGGTTACTATGTGAGGTGAATTATGATT
* *
24756903 TGTGAAGCATATCTACATTCGT
777 TGTGAAGCATATCTATATTCGG
* *
24756925 CAATAATGGATAAAATACATTTATGTCATGGGTGAATGGTTAAACACTTGGGTTAGGATAAAATG
1 CAATAATGGATAAAATACATTTATGTCATGGGTGAATGGTTAAACACTTGGGTTAGTATAAAGTG
*
24756990 TACATTTAGTAAGGTTTGTTGGAAAAGAAATAACAGGTTTTGGTTTATATCGAACAGAGAAAATT
66 TATATTTAGTAAGGTTTGTTGGAAAAGAAATAACAGGTTTTGGTTTATATCGAACAGAGAAAATT
* * *
24757055 TGTACTATATTTGTGACTAATTTTATTAGGTGTATGGGAGATGAATGGTTAATGTATGTATGTGA
131 TGTACTATCTTTGTGGCTAATTTTGTTAGGTGTATGGGAGATGAATGGTTAATGTATGTATGTGA
* *
24757120 CAATTACCTTACTAGATAGTGAACTATTGATATACTAAAATAGTTAAAAAGGAAAATTTGACGAT
196 CAATTAGCTTACCAGATAGTGAACTATTGATATACTAAAATAGTTAAAAAGGAAAATTTGACGAT
*
24757185 ATGAGAATATGTAATGATACAGATCAATTTAGGTACTCTGGACGAATTCAACAAGTAAGTGAAAA
261 ATGAGAATATGTAATGATACGGATCAATTTAGGTACTCTGGACGAATTCAACAAGTAAGTGAAAA
*
24757250 CTTGTAAATTCATACGACGAGGAAGTGAAAGATTGTGACTATATTCAGCCAAGTAAACCCTAATT
326 TTTGTAAATTCATACGACGAGGAAGTGAAAGATTGTGACTATATTCAGCCAAGTAAACCCTAATT
* * * * *
24757315 AACGACCCAAGAATTACAATTGGAATGTTTTAA-TTTGGATAAAATTTTATAACTCTGTTTAATA
391 AACGACCCAATAATAACAATTGGAAAGTTTTAATTTTGGATAAAATTTTATAACTCAGATTAATA
* *
24757379 TGTCTATAAGTGTATTTATTCTGGTAAAGCCTCGTACCCTATTCCAGCGTTGATATAGGTAAGAG
456 TGTCTATAAGTGTATTTATTCTGGTAATGCCTCGTACCCTATTCCAGCGTTGATATGGGTAAGAG
* *
24757444 GTATTACAATGTGACATCACCAGATTCCGCCGTAATGTTTAGGCCGGGTTTGGGGTGTTACATTT
521 GTGTTACAATGTGACATCACCAGATTCCGCCCTAATGTTTAGGCCGGGTTTGGGGTGTTACATTT
*
24757509 AGTGGTTCGGTTTAGGTGATGGAAATGTCACAAACATTTGTCTTTGATATGTGATGATCATGTAA
586 AGTGGTTCAGTTTAGGTGATGGAAATGTCACAAACATTTGTCTTTGATATGTGATGATCATGTAA
* * * *
24757574 TGCCATGAAAATTTGTTTAATTGTGTGGTTTAAAATTTATCTATACTTTGTTATATTACTTATAT
651 TGCCATGAAAATTTGTTTAATTGTGTGGTTTAAAATGTATCTATATTTTGTTATATAAATTAT-T
* ** *
24757639 TT-TAATCTATTTGACAAATGATCAAAAA-TAATTTGGTTTTTATGTGAAGTGAATTATGATTTG
715 TTGTAATCTATTTGACAAATGAT-AAAAATTAATTCGGTTACTATGTGAGGTGAATTATGATTTG
*
24757702 TGAAACATATCTATATTCGG
779 TGAAGCATATCTATATTCGG
* * *
24757722 CAATAATGGATAAAATACATTTATGTCGTCGGTGAATGGTTAAATACTTGGGTTAGTATAAAGTG
1 CAATAATGGATAAAATACATTTATGTCATGGGTGAATGGTTAAACACTTGGGTTAGTATAAAGTG
* *
24757787 TATATTTAGTAAGATTTGTTGGAAAAGAAATAACAGGTTTTGGTTTATATCGAACCGAGAAAATT
66 TATATTTAGTAAGGTTTGTTGGAAAAGAAATAACAGGTTTTGGTTTATATCGAACAGAGAAAATT
* * * **
24757852 TGTATTATCTTTGTGGCTAATTTTTTTAGCTGTATGGGAGATGAATGGTTAATCAATGTATGTGA
131 TGTACTATCTTTGTGGCTAATTTTGTTAGGTGTATGGGAGATGAATGGTTAATGTATGTATGTGA
*
24757917 CAATTAGCTTACCAGATAGTGAACTATTGATATACTACAATAGTTAAAAAGGAAAATTTGACGAT
196 CAATTAGCTTACCAGATAGTGAACTATTGATATACTAAAATAGTTAAAAAGGAAAATTTGACGAT
* * * *
24757982 ATGAGAATATGTTATGATACGGATCAATTCAGGTACTCAGGACGAATTGAACAAGTAAGTGAAAA
261 ATGAGAATATGTAATGATACGGATCAATTTAGGTACTCTGGACGAATTCAACAAGTAAGTGAAAA
* * * *
24758047 TTTATAAATTCATACAACGAGGAAGTGAAAGATTGTGAGTATATTTAGCCAAGTAAACCCTAATT
326 TTTGTAAATTCATACGACGAGGAAGTGAAAGATTGTGACTATATTCAGCCAAGTAAACCCTAATT
* * * *
24758112 AACGACCCAATAATAACAATTGGAAAGTTTGAA-TTTGGGTAAAATTTTAAAACTCGGATTAATA
391 AACGACCCAATAATAACAATTGGAAAGTTTTAATTTTGGATAAAATTTTATAACTCAGATTAATA
* * *
24758176 TGTCTATAAGTGTATTTATTCAGGTAATTCCTCGTACCCTAGTCCAGCGTTGAT-TCGGGTAAGA
456 TGTCTATAAGTGTATTTATTCTGGTAATGCCTCGTACCCTATTCCAGCGTTGATAT-GGGTAAGA
* * ** *
24758240 GGCGTTACAATGTGACATTACCAGATTTGGCCCTAATGTTTAGG-CGGAG-TTGGGGTCTTACAT
520 GGTGTTACAATGTGACATCACCAGATTCCGCCCTAATGTTTAGGCCGG-GTTTGGGGTGTTACAT
* *
24758303 TTAGTGGTTC-GATTTAGGTGATGGAAATGTCACAGACATTTGTCTTTGATATGTGACGATCATG
584 TTAGTGGTTCAG-TTTAGGTGATGGAAATGTCACAAACATTTGTCTTTGATATGTGATGATCATG
* * * * *
24758367 TAATGCCATGGAAAA-TTGGTTAATTGGGTGGTTAAAAAGGTACCTATATTTTGTTGA-ATAAAC
648 TAATGCCAT-GAAAATTTGTTTAATTGTGTGGTTTAAAATGTATCTATATTTTGTT-ATATAAA-
* *
24758430 TTAATGTTGTAATCTATTTGACAAATGATAAAAATTAATTTGGTTACTATGTGAGGTGAATTATG
710 TT-ATTTTGTAATCTATTTGACAAATGATAAAAATTAATTCGGTTACTATGTGAGGTGAATTATG
*
24758495 ATTTGTGAAGCATATCTATATTCAG
774 ATTTGTGAAGCATATCTATATTCGG
** *
24758520 CCGTAATGGATAAAATACATTTATGTCATGGGTGAATGGTTAAACACTTGGGTTAGTGTAAAGTG
1 CAATAATGGATAAAATACATTTATGTCATGGGTGAATGGTTAAACACTTGGGTTAGTATAAAGTG
* *
24758585 TACATTTAGTAAGGTTTGTTGGAAAAGAAATACCAGGTTTTGGTTTATATCGAACAGAGAAAATT
66 TATATTTAGTAAGGTTTGTTGGAAAAGAAATAACAGGTTTTGGTTTATATCGAACAGAGAAAATT
24758650 TGTACTATCTTTGTGGCTAATTTTGTTAGGTGTATGGGAGATGAATGGGTTAATGTATGTATGTG
131 TGTACTATCTTTGTGGCTAATTTTGTTAGGTGTATGGGAGATGAAT-GGTTAATGTATGTATGTG
24758715 ACAATTAGCTTACCAGATAGTGAACTATTGATATACTAAAATAGTTAAAAAGGAAAATTTGACGA
195 ACAATTAGCTTACCAGATAGTGAACTATTGATATACTAAAATAGTTAAAAAGGAAAATTTGACGA
24758780 TATGAGAATATGTAATGATACGGATCAATTTAGGTACTCTGGACGAATTCAACAAGTAAGTGAAA
260 TATGAGAATATGTAATGATACGGATCAATTTAGGTACTCTGGACGAATTCAACAAGTAAGTGAAA
24758845 ATTTGTAAATTCATACGACGAGGAAGTGAAAGATTGTGACTATATTCAGCCAAGTAAACCCTAAT
325 ATTTGTAAATTCATACGACGAGGAAGTGAAAGATTGTGACTATATTCAGCCAAGTAAACCCTAAT
*
24758910 TAACAACCCAATAATAACAATTGGAAAGTTTTAATTTTGGATAAAATTTTATAACTCAGATT-A-
390 TAACGACCCAATAATAACAATTGGAAAGTTTTAATTTTGGATAAAATTTTATAACTCAGATTAAT
*
24758973 ATGTCTATAAGTGTATTTATTCTGGTAAAGCCTCGTACCCTATTCCAGCGTTGATATGGGTAAGA
455 ATGTCTATAAGTGTATTTATTCTGGTAATGCCTCGTACCCTATTCCAGCGTTGATATGGGTAAGA
*
24759038 GGTATTACAATGTGACATCACCAGATTCCGCCCTAATGTTTAGGCCGGGTTTGGGGTGTTACATT
520 GGTGTTACAATGTGACATCACCAGATTCCGCCCTAATGTTTAGGCCGGGTTTGGGGTGTTACATT
* *
24759103 TAGTGGTTCAGTTTAGGTGATGGAAATGTCACGAACATTTGTCTTTGATATATGATGATCATGTA
585 TAGTGGTTCAGTTTAGGTGATGGAAATGTCACAAACATTTGTCTTTGATATGTGATGATCATGTA
24759168 ATGCCATGAAAATTTGTTTAATTGTGTGGTTTAAAATGTATCTATATTTTGTTATATAAATTATT
650 ATGCCATGAAAATTTGTTTAATTGTGTGGTTTAAAATGTATCTATATTTTGTTATATAAATTATT
*
24759233 TTGTAATCTATTTGACAAATGAGAAAAATTAATTCGGTTACTATGTGAGGTGAA-TATGATTTGT
715 TTGTAATCTATTTGACAAATGATAAAAATTAATTCGGTTACTATGTGAGGTGAATTATGATTTGT
24759297 GAAGCATATCTATATTCGG
780 GAAGCATATCTATATTCGG
* * *
24759316 TAATAATGGATAAAATACATTTATGTCATGGGTGAATGGTTAAACACTTGGGTTTGTATAATGTG
1 CAATAATGGATAAAATACATTTATGTCATGGGTGAATGGTTAAACACTTGGGTTAGTATAAAGTG
* * * * *
24759381 TATATTTAGTAAGGTTTGTTGGAAAAGAAATAATATGTTTTGATTTATATCGAATAGAGAAAGTT
66 TATATTTAGTAAGGTTTGTTGGAAAAGAAATAACAGGTTTTGGTTTATATCGAACAGAGAAAATT
*
24759446 TGTACTATCTTTGTGGCGAATTTTGTTAGGTGTATGGGAGATGAATGGTTAATGTATGTATGTGA
131 TGTACTATCTTTGTGGCTAATTTTGTTAGGTGTATGGGAGATGAATGGTTAATGTATGTATGTGA
** * *
24759511 CAATTAGCTTACCAGATAGTGAACTATTGATATACTGCAATAGGTAAAAAGGAAAATTTGATGAT
196 CAATTAGCTTACCAGATAGTGAACTATTGATATACTAAAATAGTTAAAAAGGAAAATTTGACGAT
* * * * * *
24759576 ATGAGAATATTTCATGATACGGATCAATTCAGGTACGCAT-GACTAATTCAACAAGTGA-T--AA
261 ATGAGAATATGTAATGATACGGATCAATTTAGGTACTC-TGGACGAATTCAACAAGTAAGTGAAA
* * *
24759637 GTTATG--AATTCATACGACGAGGAAGTGAAAGATTGTGAGTATATTTAGCCAAGTAAACCCTAA
325 ATT-TGTAAATTCATACGACGAGGAAGTGAAAGATTGTGACTATATTCAGCCAAGTAAACCCTAA
* *
24759700 TTAACGACCCAAGAATAACAATTGGAAAGTTTT-ATTTTGGATAAAATTTTATAACTCGGATTAA
389 TTAACGACCCAATAATAACAATTGGAAAGTTTTAATTTTGGATAAAATTTTATAACTCAGATTAA
* * *
24759764 TATGTCTA-AATGTGTATTTATTCTGGTAATGCCTCGCACCTTATTCCAGCGTTGATACGGGTAA
454 TATGTCTATAA-GTGTATTTATTCTGGTAATGCCTCGTACCCTATTCCAGCGTTGATATGGGTAA
* * *
24759828 GAGGTGTTACAATGTGACATCACCAGATTCGGCCCTAGTGTTTAGGCCGAGTTTGGGGTGTTACA
518 GAGGTGTTACAATGTGACATCACCAGATTCCGCCCTAATGTTTAGGCCGGGTTTGGGGTGTTACA
*
24759893 TTTACTGGTATCAG
583 TTTAGTGGT-TCAG
24759907 AGCTACTGTT
Statistics
Matches: 2753, Mismatches: 201, Indels: 62
0.91 0.07 0.02
Matches are distributed among these distances:
790 28 0.01
791 89 0.03
792 129 0.05
793 6 0.00
794 26 0.01
795 334 0.12
796 334 0.12
797 873 0.32
798 350 0.13
799 559 0.20
800 25 0.01
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.35
Consensus pattern (798 bp):
CAATAATGGATAAAATACATTTATGTCATGGGTGAATGGTTAAACACTTGGGTTAGTATAAAGTG
TATATTTAGTAAGGTTTGTTGGAAAAGAAATAACAGGTTTTGGTTTATATCGAACAGAGAAAATT
TGTACTATCTTTGTGGCTAATTTTGTTAGGTGTATGGGAGATGAATGGTTAATGTATGTATGTGA
CAATTAGCTTACCAGATAGTGAACTATTGATATACTAAAATAGTTAAAAAGGAAAATTTGACGAT
ATGAGAATATGTAATGATACGGATCAATTTAGGTACTCTGGACGAATTCAACAAGTAAGTGAAAA
TTTGTAAATTCATACGACGAGGAAGTGAAAGATTGTGACTATATTCAGCCAAGTAAACCCTAATT
AACGACCCAATAATAACAATTGGAAAGTTTTAATTTTGGATAAAATTTTATAACTCAGATTAATA
TGTCTATAAGTGTATTTATTCTGGTAATGCCTCGTACCCTATTCCAGCGTTGATATGGGTAAGAG
GTGTTACAATGTGACATCACCAGATTCCGCCCTAATGTTTAGGCCGGGTTTGGGGTGTTACATTT
AGTGGTTCAGTTTAGGTGATGGAAATGTCACAAACATTTGTCTTTGATATGTGATGATCATGTAA
TGCCATGAAAATTTGTTTAATTGTGTGGTTTAAAATGTATCTATATTTTGTTATATAAATTATTT
TGTAATCTATTTGACAAATGATAAAAATTAATTCGGTTACTATGTGAGGTGAATTATGATTTGTG
AAGCATATCTATATTCGG
Found at i:24762501 original size:14 final size:14
Alignment explanation
Indices: 24762482--24762521 Score: 73
Period size: 13 Copynumber: 2.9 Consensus size: 14
24762472 TTGTAGTATT
24762482 GAAAAAAAAAGTTC
1 GAAAAAAAAAGTTC
24762496 GAAAAAAAAA-TTC
1 GAAAAAAAAAGTTC
24762509 GAAAAAAAAAGTT
1 GAAAAAAAAAGTT
24762522 TGTGTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.68, C:0.05, G:0.12, T:0.15
Consensus pattern (14 bp):
GAAAAAAAAAGTTC
Found at i:24762604 original size:19 final size:19
Alignment explanation
Indices: 24762562--24762605 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
24762552 AAATTCATTC
*
24762562 AAAAAAAAGAATTTCGAAT
1 AAAAAAAAGAATTTCGAAA
* *
24762581 TAAAAAAAGAATTTGGAAA
1 AAAAAAAAGAATTTCGAAA
24762600 AAAAAA
1 AAAAAA
24762606 TTACAAGTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.68, C:0.02, G:0.11, T:0.18
Consensus pattern (19 bp):
AAAAAAAAGAATTTCGAAA
Found at i:24764149 original size:27 final size:27
Alignment explanation
Indices: 24764119--24764174 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
24764109 GAAAGTGAAC
*
24764119 AAGAGAAGGAGGCCATTGAACAAACCG
1 AAGAGAAGGAGGACATTGAACAAACCG
* * *
24764146 AAGATAAGGAGGACGTTGAACAAGCCG
1 AAGAGAAGGAGGACATTGAACAAACCG
24764173 AA
1 AA
24764175 AGTGGAGAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.45, C:0.16, G:0.30, T:0.09
Consensus pattern (27 bp):
AAGAGAAGGAGGACATTGAACAAACCG
Found at i:24764743 original size:48 final size:47
Alignment explanation
Indices: 24764691--24764797 Score: 105
Period size: 48 Copynumber: 2.2 Consensus size: 47
24764681 GCGAGAGCAA
* *
24764691 AAAAATGAAAAGAGTG-TTGAAAAGAAGAAAAGCAAAAAG-ACGAGTGAT
1 AAAAATGAAAAGAGTGATTCAAAAG-AG-AAA-CAAAAAGAACGAGTGAC
24764739 AAAAA--AAGAGAGAGTGATTCAAAAGAGAAACAAAAAGAAACGAGTGAC
1 AAAAATGAA-A-AGAGTGATTCAAAAGAGAAACAAAAAG-AACGAGTGAC
*
24764787 GAAAATGAAAA
1 AAAAATGAAAA
24764798 AAAGAGTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
46 9 0.18
47 4 0.08
48 26 0.53
49 8 0.16
50 2 0.04
ACGTcount: A:0.61, C:0.06, G:0.23, T:0.10
Consensus pattern (47 bp):
AAAAATGAAAAGAGTGATTCAAAAGAGAAACAAAAAGAACGAGTGAC
Found at i:24771590 original size:30 final size:30
Alignment explanation
Indices: 24771538--24771595 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
24771528 TCTGAGCTTT
24771538 GGGGAAAAAGTGTAAATATGCAAAAGTTGA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTGA
* * * *
24771568 GGGGCAAAATTGTAATTTTGCAAAAGTT
1 GGGGAAAAAGTGTAAATATGCAAAAGTT
24771596 TGAGTTAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.05, G:0.28, T:0.26
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTGA
Found at i:24772051 original size:43 final size:43
Alignment explanation
Indices: 24771961--24772109 Score: 180
Period size: 43 Copynumber: 3.5 Consensus size: 43
24771951 ATTCCCCGAA
* * *
24771961 GGGTTGCTAAGTG-TCGATTCCA-TGAAT-TATTGATTCT-AAAG
1 GGGTTGCTAAGTGCT-GATTCCACCGTATAT-TTGATTGTGAAAG
*
24772002 GTGGTTGTTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAG
1 G-GGTTGCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAG
*
24772046 GGGTTGCTAAGTGCTGATTCCACCGTATCTTTGATTGTGAAAG
1 GGGTTGCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAG
* *
24772089 GGTTTGCTATGTGCTGATTCC
1 GGGTTGCTAAGTGCTGATTCC
24772110 CTATACCACT
Statistics
Matches: 95, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
41 1 0.01
42 18 0.19
43 70 0.74
44 6 0.06
ACGTcount: A:0.21, C:0.14, G:0.27, T:0.38
Consensus pattern (43 bp):
GGGTTGCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAG
Found at i:24774582 original size:20 final size:20
Alignment explanation
Indices: 24774557--24774612 Score: 87
Period size: 20 Copynumber: 2.8 Consensus size: 20
24774547 AAACTTATGC
24774557 TAAGTAAATGGAATGGAAAG
1 TAAGTAAATGGAATGGAAAG
*
24774577 TAAGTAAAT-TAAGTGGAAAG
1 TAAGTAAATGGAA-TGGAAAG
24774597 TAAGTAAATGGAATGG
1 TAAGTAAATGGAATGG
24774613 TTCATCGTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.48, C:0.00, G:0.29, T:0.23
Consensus pattern (20 bp):
TAAGTAAATGGAATGGAAAG
Found at i:24778239 original size:10 final size:10
Alignment explanation
Indices: 24778224--24778253 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
24778214 TACCATGTGG
24778224 TTAATGTTTT
1 TTAATGTTTT
24778234 TTAATGTTTT
1 TTAATGTTTT
24778244 TTAATGTTTT
1 TTAATGTTTT
24778254 GACCAAGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (10 bp):
TTAATGTTTT
Found at i:24787634 original size:16 final size:16
Alignment explanation
Indices: 24787613--24787644 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24787603 GTTTTGTTGC
*
24787613 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
24787629 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
24787645 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:24787844 original size:46 final size:43
Alignment explanation
Indices: 24787768--24787866 Score: 110
Period size: 46 Copynumber: 2.2 Consensus size: 43
24787758 AATAATAACA
* *
24787768 GATACACGGTGGATTCAGCACACAGTAACCACCCTTTGTAATCAAT
1 GATAC-CGGTGGATTCAGCACACAGCAACCA-CC-TTATAATCAAT
* *
24787814 GATATCCGGTGGGA-TCAGCACATAGCAACCACCTTATAATTAAT
1 GATA-CCGGT-GGATTCAGCACACAGCAACCACCTTATAATCAAT
24787858 GATACCGGT
1 GATACCGGT
24787867 TCACATAGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
43 5 0.11
44 13 0.28
45 2 0.04
46 23 0.49
47 4 0.09
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (43 bp):
GATACCGGTGGATTCAGCACACAGCAACCACCTTATAATCAAT
Found at i:24788038 original size:101 final size:102
Alignment explanation
Indices: 24787870--24788054 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 102
24787860 TACCGGTTCA
* * *
24787870 CATAGTAGCCTGCACATAGTACTACATATGTGACCATCACTGTCCAATACACGTGGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTGTCCAATACACGTAGTAGCCTGCA
24787935 CATAGTACTACACACGTGATCGAAGCTATCTGGTACG
66 CATAGTACTACACACGTGATCGAAGCTATCTGGTACG
* * *** *
24787972 CATAGTTGCCTGCACATAGTACTACACGTGCGACCTATCA-T-TCTGGTACACGTAGTGGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTGTCCAATACACGTAGTAGCCTGC
*
24788035 ACATAGTACTACACATGTGA
65 ACATAGTACTACACACGTGA
24788055 CCATCACTTT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
101 36 0.50
102 32 0.44
103 4 0.06
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTGTCCAATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAGCTATCTGGTACG
Found at i:24788077 original size:101 final size:102
Alignment explanation
Indices: 24787865--24788088 Score: 222
Period size: 101 Copynumber: 2.2 Consensus size: 102
24787855 AATGATACCG
* * *
24787865 GTTCACATAGTAGCCTGCACATAGTACTACATATGTGACCATCACTGTCCAATACACGTGGTAGC
1 GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTGTCCAATACACGTAGTAGC
* **
24787930 CTGCACATAGTACTACACACGTGATCGAAGCTATCTG
66 CTGCACATAGTACTACACACGTGATCCAAGCTATCAC
* * * * *** *
24787967 GTACGCATAGTTGCCTGCACATAGTACTACACGTGCGACCTATCA-T-TCTGGTACACGTAGTGG
1 GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTGTCCAATACACGTAGTAG
* *
24788030 CCTGCACATAGTACTACACATGTGA-CCATCA-CTTTCAC
65 CCTGCACATAGTACTACACACGTGATCCA--AGCTATCAC
* * *
24788068 TTTCACATAGTGGCCTACACA
1 GTTCACATAGTAGCCTGCACA
24788089 CAGTCCATGC
Statistics
Matches: 98, Mismatches: 21, Indels: 7
0.78 0.17 0.06
Matches are distributed among these distances:
100 2 0.02
101 56 0.57
102 36 0.37
103 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (102 bp):
GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTGTCCAATACACGTAGTAGC
CTGCACATAGTACTACACACGTGATCCAAGCTATCAC
Found at i:24804600 original size:16 final size:17
Alignment explanation
Indices: 24804579--24804614 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
24804569 CACTTTATCC
24804579 CTCATCCCTCATCC-CT
1 CTCATCCCTCATCCTCT
*
24804595 CTCATCTCTCATCCTCT
1 CTCATCCCTCATCCTCT
24804612 CTC
1 CTC
24804615 TCAACTCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.11, C:0.53, G:0.00, T:0.36
Consensus pattern (17 bp):
CTCATCCCTCATCCTCT
Found at i:24809956 original size:20 final size:20
Alignment explanation
Indices: 24809920--24809957 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24809910 TTTAGGATTT
*
24809920 TTAAAAAATATATATTAATA
1 TTAAAAAATATACATTAATA
24809940 TTAAAATAATA-ACATTAA
1 TTAAAA-AATATACATTAA
24809958 GGTTAGTCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (20 bp):
TTAAAAAATATACATTAATA
Found at i:24826211 original size:15 final size:16
Alignment explanation
Indices: 24826191--24826221 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
24826181 AAAATTGCTT
24826191 AAAAATCAAG-CAAAA
1 AAAAATCAAGTCAAAA
24826206 AAAAATCAAGTCAAAA
1 AAAAATCAAGTCAAAA
24826222 GCCACTAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.71, C:0.13, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAAATCAAGTCAAAA
Found at i:24828755 original size:25 final size:26
Alignment explanation
Indices: 24828727--24828795 Score: 86
Period size: 27 Copynumber: 2.7 Consensus size: 26
24828717 TCCTATGCAT
24828727 GTATGCTCACACGAGCTAT-AAATCG
1 GTATGCTCACACGAGCTATAAAATCG
* * *
24828752 GTATGCTCACATGAGCTGTGAAAATGG
1 GTATGCTCACACGAGCTAT-AAAATCG
*
24828779 GTTTGCTCACACGAGCT
1 GTATGCTCACACGAGCT
24828796 TTGGGTCAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 17 0.46
27 20 0.54
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.26
Consensus pattern (26 bp):
GTATGCTCACACGAGCTATAAAATCG
Found at i:24839898 original size:33 final size:33
Alignment explanation
Indices: 24839856--24839921 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
24839846 ATGAGGCTTC
* *
24839856 CACCATCCTAAATTTTCTTACAATGTTGAAATA
1 CACCATCCTAAATTTGCTTACAATGTCGAAATA
* *
24839889 CACCATCCTAACTTTGCTTACGATGTCGAAATA
1 CACCATCCTAAATTTGCTTACAATGTCGAAATA
24839922 ACCTTGAGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.33
Consensus pattern (33 bp):
CACCATCCTAAATTTGCTTACAATGTCGAAATA
Found at i:24851426 original size:15 final size:15
Alignment explanation
Indices: 24851406--24851438 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
24851396 TCAAGTTATT
24851406 ATGTTTCGAACATTA
1 ATGTTTCGAACATTA
24851421 ATGTTTCGAACATTA
1 ATGTTTCGAACATTA
24851436 ATG
1 ATG
24851439 CCTTTAGAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.39
Consensus pattern (15 bp):
ATGTTTCGAACATTA
Found at i:24852236 original size:18 final size:18
Alignment explanation
Indices: 24852213--24852247 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24852203 ATTAATTAAA
24852213 AATCAGATTAAAGAAAAC
1 AATCAGATTAAAGAAAAC
*
24852231 AATCAGATTAAATAAAA
1 AATCAGATTAAAGAAAA
24852248 AGCTAGGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.63, C:0.09, G:0.09, T:0.20
Consensus pattern (18 bp):
AATCAGATTAAAGAAAAC
Found at i:24867360 original size:43 final size:42
Alignment explanation
Indices: 24867279--24867618 Score: 254
Period size: 43 Copynumber: 7.9 Consensus size: 42
24867269 GAAACGTCGC
* ** ** *
24867279 TAACATTT-GCGGCGTTTTTAAAAACAAGCGCCGCTAAAGGTCG
1 TAACCTTTAGCGGCGTTTTTCCAAA-AA-CGCCGCTAAAGAACA
* *
24867322 TGACCTTTAGCGGCGTTTTTCCAACAAACGCCACTAAAGAACA
1 TAACCTTTAGCGGCGTTTTTCCAA-AAACGCCGCTAAAGAACA
* * ** *
24867365 TGACCTTTAGTGGCGCTTTCCCCAAAAACGCCGCGAAAGAACA
1 TAACCTTTAGCGGCG-TTTTTCCAAAAACGCCGCTAAAGAACA
* * *
24867408 TAACCTTTAGCGGTGCTTTTTCTAAAAACACCGCTAAAGAACA
1 TAACCTTTAGCGGCG-TTTTTCCAAAAACGCCGCTAAAGAACA
* * * *
24867451 TAACATTTAGCGGTGCTTTTCACAAAAACGCCACTAAAGAACA
1 TAACCTTTAGCGGCGTTTTTC-CAAAAACGCCGCTAAAGAACA
* ** * *
24867494 -AGACATTTAGCGGCGCTTTCCCCAAAATCGCTGCTAAAGAA-A
1 TA-ACCTTTAGCGGCG-TTTTTCCAAAAACGCCGCTAAAGAACA
* ** *
24867536 AATACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAAAACA
1 TA-ACCTTTAGCGGCG-TTTTTCCAAAAACGCCGCTAAAGAACA
* * ** *
24867580 TGACCTTTAGTGGCGTTTTTGGAGAAAACGCAGCTAAAG
1 TAACCTTTAGCGGCGTTTTTCCA-AAAACGCCGCTAAAG
24867619 GTCATGAAAA
Statistics
Matches: 241, Mismatches: 47, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
42 11 0.05
43 203 0.84
44 26 0.11
45 1 0.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (42 bp):
TAACCTTTAGCGGCGTTTTTCCAAAAACGCCGCTAAAGAACA
Found at i:24867460 original size:86 final size:86
Alignment explanation
Indices: 24867324--24867618 Score: 310
Period size: 86 Copynumber: 3.4 Consensus size: 86
24867314 AAAGGTCGTG
* * *
24867324 ACCTTTAGCGGCG-TTTTTCCAACAAACGCCACTAAAGAACATGACCTTTAGTGGCGCTTTCCCC
1 ACCTTTAGCGGCGCTTTTTCCAA-AAACGCCGCTAAAGAACATAACCTTTAGCGGCGCTTTCCCC
*
24867388 AAAAACGCCGCGAAAGAACATA
65 AAAAACGCCGCTAAAGAACATA
* * * * * * *
24867410 ACCTTTAGCGGTGCTTTTTCTAAAAACACCGCTAAAGAACATAACATTTAGCGGTGCTTTTCACA
1 ACCTTTAGCGGCGCTTTTTCCAAAAACGCCGCTAAAGAACATAACCTTTAGCGGCGCTTTCCCCA
*
24867475 AAAACGCCACTAAAGAACA-A
66 AAAACGCCGCTAAAGAACATA
* ** * * *
24867495 GACATTTAGCGGCGCTTTCCCCAAAATCGCTGCTAAAGAA-AAATACCTTTAGCGGCGCTTTCCC
1 -ACCTTTAGCGGCGCTTTTTCCAAAAACGCCGCTAAAGAACATA-ACCTTTAGCGGCGCTTTCCC
* *
24867559 CAAAAACGCCGCTAAAAAACATG
64 CAAAAACGCCGCTAAAGAACATA
* ** *
24867582 ACCTTTAGTGGCG-TTTTTGGAGAAAACGCAGCTAAAG
1 ACCTTTAGCGGCGCTTTTTCCA-AAAACGCCGCTAAAG
24867619 GTCATGAAAA
Statistics
Matches: 168, Mismatches: 36, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
85 7 0.04
86 153 0.91
87 8 0.05
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (86 bp):
ACCTTTAGCGGCGCTTTTTCCAAAAACGCCGCTAAAGAACATAACCTTTAGCGGCGCTTTCCCCA
AAAACGCCGCTAAAGAACATA
Found at i:24867543 original size:129 final size:129
Alignment explanation
Indices: 24867327--24867599 Score: 343
Period size: 129 Copynumber: 2.1 Consensus size: 129
24867317 GGTCGTGACC
* * * *
24867327 TTTAGCGGCGTTTTTCCAACAAACGCCACTAAAGAACATGACCTTTAGTGGCGCTTTCCCCAAAA
1 TTTAGCGGCGCTTTTCCAACAAACGCCACTAAAGAACAAGACATTTAGCGGCGCTTTCCCCAAAA
* * ** * *
24867392 ACGCCGCGAAAGAACATAACCTTTAGCGGTGCTTTTTCTAAAAACACCGCTAAAGAACATAACA
66 ACGCCGCGAAAGAAAATAACCTTTAGCGGCGCTTTCCCCAAAAACACCGCTAAAAAACATAACA
*
24867456 TTTAGCGGTGCTTTTCACAA-AAACGCCACTAAAGAACAAGACATTTAGCGGCGCTTTCCCCAAA
1 TTTAGCGGCGCTTTTC-CAACAAACGCCACTAAAGAACAAGACATTTAGCGGCGCTTTCCCCAAA
* * * * *
24867520 ATCGCTGCTAAAGAAAA-ATACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAAAACATGAC
65 AACGCCGCGAAAGAAAATA-ACCTTTAGCGGCGCTTTCCCCAAAAACACCGCTAAAAAACATAAC
*
24867584 C
129 A
* *
24867585 TTTAGTGGCGTTTTT
1 TTTAGCGGCGCTTTT
24867600 GGAGAAAACG
Statistics
Matches: 122, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
128 1 0.01
129 118 0.97
130 3 0.02
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (129 bp):
TTTAGCGGCGCTTTTCCAACAAACGCCACTAAAGAACAAGACATTTAGCGGCGCTTTCCCCAAAA
ACGCCGCGAAAGAAAATAACCTTTAGCGGCGCTTTCCCCAAAAACACCGCTAAAAAACATAACA
Found at i:24868668 original size:114 final size:114
Alignment explanation
Indices: 24868467--24868777 Score: 330
Period size: 114 Copynumber: 2.7 Consensus size: 114
24868457 CAATGGAAAG
* * * *
24868467 TAGCACTTTAACACTTTAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACA-TATCA
1 TAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACACT-TCA
* * *
24868531 ATTAACAACATTTATACACATCAATT-ACAGC-TATAAAACACTTCAATT-
65 ATTTACAACATTTATACACATCAATTAACAACAT-TAAAACACCTCAATTA
*
24868579 TGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACACTTA
1 T--AGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACACTTC
* * * * *
24868644 AATTTGCAGCAATTTA-ACATATCAATTAACAACATTTATACACCTCAATTA
64 AATTTACAAC-ATTTATACACATCAATTAACAACATTAAAACACCTCAATTA
* * ** * *
24868695 TAGCGA-TAAAACA-TCTCAATTTCCAGCAACTAAATACTTGAATTTGCAGCACTTAAACACTTC
1 TAGC-ACTTAAACACT-TCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACACTTC
*
24868758 AATTTACAACATTTAAACAC
64 AATTTACAACATTTATACAC
24868778 TTAAATTTAC
Statistics
Matches: 166, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
112 1 0.01
113 6 0.04
114 134 0.81
115 23 0.14
116 2 0.01
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.32
Consensus pattern (114 bp):
TAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACACTTCAA
TTTACAACATTTATACACATCAATTAACAACATTAAAACACCTCAATTA
Found at i:24868722 original size:137 final size:137
Alignment explanation
Indices: 24868468--24868785 Score: 453
Period size: 137 Copynumber: 2.3 Consensus size: 137
24868458 AATGGAAAGT
* * *
24868468 AGCACTTT-AACACTTTAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATATCAA
1 AGCA-TTTAAACACTTAAATTTACAGCATTTAAACACTTAAATTTGCAGCAATTTAACATATCAA
* *
24868532 TTAACAACATTTATACACATCAATTACAGCTATAAAACACTTCAATTTGCAGC-ACTTAAACACT
65 TTAACAACATTTATACACATCAATTACAGCGATAAAACACTTCAATTTCCAGCAAC-TAAACACT
24868596 TCAATTTAC
129 TCAATTTAC
* *
24868605 AGCATTTAAACACTTAAATTTGCAGCACTTAAACACTTAAATTTGCAGCAATTTAACATATCAAT
1 AGCATTTAAACACTTAAATTTACAGCATTTAAACACTTAAATTTGCAGCAATTTAACATATCAAT
* * *
24868670 TAACAACATTTATACACCTCAATTATAGCGATAAAACA-TCTCAATTTCCAGCAACTAAATACTT
66 TAACAACATTTATACACATCAATTACAGCGATAAAACACT-TCAATTTCCAGCAACTAAACACTT
* *
24868734 GAATTTGC
130 CAATTTAC
* * *
24868742 AGCACTTAAACACTTCAATTTACAACATTTAAACACTTAAATTT
1 AGCATTTAAACACTTAAATTTACAGCATTTAAACACTTAAATTT
24868786 ACAAATCCAC
Statistics
Matches: 161, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
136 4 0.02
137 155 0.96
138 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32
Consensus pattern (137 bp):
AGCATTTAAACACTTAAATTTACAGCATTTAAACACTTAAATTTGCAGCAATTTAACATATCAAT
TAACAACATTTATACACATCAATTACAGCGATAAAACACTTCAATTTCCAGCAACTAAACACTTC
AATTTAC
Found at i:24868789 original size:23 final size:23
Alignment explanation
Indices: 24868468--24868788 Score: 239
Period size: 23 Copynumber: 14.0 Consensus size: 23
24868458 AATGGAAAGT
*
24868468 AGCACTTT-AACACTTTAATTTAC
1 AGCA-TTTAAACACTTCAATTTAC
*
24868491 AGCATTTAAACACTTCAATTTGC
1 AGCATTTAAACACTTCAATTTAC
*
24868514 AGCACTTT-AACA-TATCAATTAAC
1 AGCA-TTTAAACACT-TCAATTTAC
* * *
24868537 AACATTTATACACATCAA-TTAC
1 AGCATTTAAACACTTCAATTTAC
* *
24868559 AGC-TATAAAACACTTCAATTTGC
1 AGCAT-TTAAACACTTCAATTTAC
*
24868582 AGCACTTAAACACTTCAATTTAC
1 AGCATTTAAACACTTCAATTTAC
* *
24868605 AGCATTTAAACACTTAAATTTGC
1 AGCATTTAAACACTTCAATTTAC
* * *
24868628 AGCACTTAAACACTTAAATTTGC
1 AGCATTTAAACACTTCAATTTAC
*
24868651 AGCAATTT-AACA-TATCAATTAAC
1 AGC-ATTTAAACACT-TCAATTTAC
* * * *
24868674 AACATTTATACACCTCAA-TTAT
1 AGCATTTAAACACTTCAATTTAC
* *
24868696 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ATTTAAACACT-TCAATTTAC
** * * *
24868719 AGCAACTAAATACTTGAATTTGC
1 AGCATTTAAACACTTCAATTTAC
*
24868742 AGCACTTAAACACTTCAATTTAC
1 AGCATTTAAACACTTCAATTTAC
* *
24868765 AACATTTAAACACTTAAATTTAC
1 AGCATTTAAACACTTCAATTTAC
24868788 A
1 A
24868789 AATCCACCAT
Statistics
Matches: 233, Mismatches: 48, Indels: 34
0.74 0.15 0.11
Matches are distributed among these distances:
21 1 0.00
22 41 0.18
23 184 0.79
24 7 0.03
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32
Consensus pattern (23 bp):
AGCATTTAAACACTTCAATTTAC
Found at i:24872164 original size:41 final size:41
Alignment explanation
Indices: 24872118--24872234 Score: 182
Period size: 41 Copynumber: 2.9 Consensus size: 41
24872108 TTTAAAAATA
* *
24872118 GAGCATTAGAGGCGCTTCTTCAAAAACGTCGCTAAAGCCCC
1 GAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCC
* *
24872159 GAGCATTAGCGGCGCTTCTTTAAAAATGCCGCTAAAGCCCC
1 GAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCC
24872200 GAGCATTAGCGGCGCTT-TTCCAAAAACGCCGCTAA
1 GAGCATTAGCGGCGCTTCTT-CAAAAACGCCGCTAA
24872235 TGCCTCGAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
40 2 0.03
41 67 0.97
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (41 bp):
GAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCC
Found at i:24872346 original size:39 final size:38
Alignment explanation
Indices: 24872302--24872411 Score: 116
Period size: 39 Copynumber: 2.8 Consensus size: 38
24872292 TGGAAAACAC
24872302 CGCTAATGCTCACTTTTAGTGGCGTTTTTTAAAAAGCG-
1 CGCTAATGCTCA-TTTTAGTGGCGTTTTTTAAAAAGCGT
* *
24872340 CTGCTAATACTCGATCTTTAGTGGC-TTTTTTTAAAAGCGT
1 C-GCTAATGCTC-AT-TTTAGTGGCGTTTTTTAAAAAGCGT
* *
24872380 CGCTAATGCTTGATTTTTAGCGGCGTTTTTTA
1 CGCTAATGC-TCA-TTTTAGTGGCGTTTTTTA
24872412 TCCAAACGCC
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
38 1 0.02
39 39 0.66
40 19 0.32
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (38 bp):
CGCTAATGCTCATTTTAGTGGCGTTTTTTAAAAAGCGT
Found at i:24872370 original size:40 final size:40
Alignment explanation
Indices: 24872316--24872411 Score: 124
Period size: 39 Copynumber: 2.4 Consensus size: 40
24872306 AATGCTCACT
24872316 TTTAGTGGCGTTTTTTAAAAAGCG-CTGCTAATACTCGATC
1 TTTAGTGGCGTTTTTTAAAAAGCGTC-GCTAATACTCGATC
* * * *
24872356 TTTAGTGGC-TTTTTTTAAAAGCGTCGCTAATGCTTGATT
1 TTTAGTGGCGTTTTTTAAAAAGCGTCGCTAATACTCGATC
*
24872395 TTTAGCGGCGTTTTTTA
1 TTTAGTGGCGTTTTTTA
24872412 TCCAAACGCC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
39 32 0.67
40 16 0.33
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (40 bp):
TTTAGTGGCGTTTTTTAAAAAGCGTCGCTAATACTCGATC
Found at i:24875263 original size:27 final size:27
Alignment explanation
Indices: 24874845--24875266 Score: 417
Period size: 27 Copynumber: 15.6 Consensus size: 27
24874835 GGGTCAACAT
* * **
24874845 AATGATTGAAATACCCTCGGAGGGTAA
1 AATGACTGAAATACCCCCATAGGGTAA
* *
24874872 AATGACTGAAATACCTCCGA-ATGGTAA
1 AATGACTGAAATACC-CCCATAGGGTAA
* **
24874899 AATGA-TCGAAATACCACCGGAGGGTAA
1 AATGACT-GAAATACCCCCATAGGGTAA
* *
24874926 AATGA-TCAAAATACCCCGATAGGGTAA
1 AATGACT-GAAATACCCCCATAGGGTAA
* * * * *
24874953 AAGGACCGAAATACCCTCATAAGGTAG
1 AATGACTGAAATACCCCCATAGGGTAA
* **
24874980 AATAACCAAAATACCCCCATAGGGTAA
1 AATGACTGAAATACCCCCATAGGGTAA
* * * *
24875007 AATGACCGAAATACCCTCATAAGGTAG
1 AATGACTGAAATACCCCCATAGGGTAA
* * *
24875034 AATGACTGAAATACGCCTATAGGGTAG
1 AATGACTGAAATACCCCCATAGGGTAA
*
24875061 AATGATTGAAATACCCCCATAGGGTAA
1 AATGACTGAAATACCCCCATAGGGTAA
* *
24875088 AATGACTGAAATAACTCCATAGGGTAA
1 AATGACTGAAATACCCCCATAGGGTAA
* *
24875115 AATGACTGAAATACCCCTAGAGGGTAA
1 AATGACTGAAATACCCCCATAGGGTAA
24875142 AATGA-TCGAAATACCCCCATAGGGTAA
1 AATGACT-GAAATACCCCCATAGGGTAA
* *
24875169 AATGACCGAAATACCCCTATAGGGTAA
1 AATGACTGAAATACCCCCATAGGGTAA
24875196 AATGA-TCGAAATA-CCCCACTAGGGTAA
1 AATGACT-GAAATACCCCCA-TAGGGTAA
24875223 AATGA-TCGAAATACCCCCATAGGGTAA
1 AATGACT-GAAATACCCCCATAGGGTAA
**
24875250 AATGACTGTTATACCCC
1 AATGACTGAAATACCCC
24875267 TAGGAGATGA
Statistics
Matches: 329, Mismatches: 56, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.02
27 315 0.96
28 7 0.02
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (27 bp):
AATGACTGAAATACCCCCATAGGGTAA
Found at i:24875281 original size:81 final size:79
Alignment explanation
Indices: 24874865--24875255 Score: 480
Period size: 81 Copynumber: 4.8 Consensus size: 79
24874855 ATACCCTCGG
* * **
24874865 AGGGTAAAATGACTGAAATACCTCCGA-ATGGTAAAATGATCGAAATACCACCGGAGGGTAAAAT
1 AGGGTAAAATGACTGAAATACC-CC-ATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAAT
* *
24874929 GATCAAAATACCCCGAT
64 GACCGAAATACCCC-AT
* * * * * * *
24874946 AGGGTAAAAGGACCGAAATACCCTCATAAGGTAGAATAACCAAAATACCCCCATAGGGTAAAATG
1 AGGGTAAAATGACTGAAATACCC-CATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATG
24875011 ACCGAAATACCCTCAT
65 ACCGAAATACCC-CAT
* * * * *
24875027 AAGGTAGAATGACTGAAATACGCCTATAGGGTAGAATGATTGAAATACCCCCATAGGGTAAAATG
1 AGGGTAAAATGACTGAAATAC-CCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATG
* *
24875092 ACTGAAATAACTCCAT
65 ACCGAAAT-ACCCCAT
*
24875108 AGGGTAAAATGACTGAAATACCCCTAGAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATG
1 AGGGTAAAATGACTGAAATACCCC-ATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATG
24875173 ACCGAAATACCCCTAT
65 ACCGAAATACCCC-AT
24875189 AGGGTAAAATGA-TCGAAATACCCCACTAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAAT
1 AGGGTAAAATGACT-GAAATACCCCA-TAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAAT
24875253 GAC
64 GAC
24875256 TGTTATACCC
Statistics
Matches: 268, Mismatches: 33, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
80 10 0.04
81 252 0.94
82 6 0.02
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.19
Consensus pattern (79 bp):
AGGGTAAAATGACTGAAATACCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGA
CCGAAATACCCCAT
Found at i:24884922 original size:68 final size:68
Alignment explanation
Indices: 24884810--24884974 Score: 190
Period size: 68 Copynumber: 2.4 Consensus size: 68
24884800 ATCTGTGAAC
* * * *
24884810 TCCATATGTTGTTATAGTCGAGCTATGCTCCTACACATTATGAACCCACGTTCAATGTCCTA-TC
1 TCCATATGTTGTCATAGTCGAGTTATGGTCCTACACAATATGAACCCACGTTCAATGTCCTAGT-
24884874 GGGA-
65 -GGAT
* * * * ** *
24884878 TCCATATGTTGCCATAGTTGAGTTATGGTCTTACATAATATGAACCCATTTTTAATGTCCTAGTG
1 TCCATATGTTGTCATAGTCGAGTTATGGTCCTACACAATATGAACCCACGTTCAATGTCCTAGTG
24884943 GAT
66 GAT
*
24884946 TCCATATGTTATCATAGTCGAGTTATGGT
1 TCCATATGTTGTCATAGTCGAGTTATGGT
24884975 TTTAAACATT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
67 3 0.04
68 77 0.95
69 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (68 bp):
TCCATATGTTGTCATAGTCGAGTTATGGTCCTACACAATATGAACCCACGTTCAATGTCCTAGTG
GAT
Found at i:24891174 original size:151 final size:151
Alignment explanation
Indices: 24890861--24891155 Score: 563
Period size: 151 Copynumber: 2.0 Consensus size: 151
24890851 TAGGAGTAAT
24890861 AGTAAATTTTTAGTTGCTTTGTATTTTATTTAAATTTTCTACGTAGGAACCCAACACAAAGGAGA
1 AGTAAATTTTTAGTTGCTTTGTATTTTATTTAAATTTTCTACGTAGGAACCCAACACAAAGGAGA
24890926 CAACAATTTGAGCTAGTAACGAACAAAAGAGGAAGCACCAACCATTAGCAGTTGGAACTACCACA
66 CAACAATTTGAGCTAGTAACGAACAAAAGAGGAAGCACCAACCATTAGCAGTTGGAACTACCACA
24890991 ATTAATTGGGTAACCATTAGC
131 ATTAATTGGGTAACCATTAGC
24891012 AGTAAATTTTTAGTTGCTTTGTATTTTATTTAAATTTTCTACGTAGGAACCCAACACAAAGGAGA
1 AGTAAATTTTTAGTTGCTTTGTATTTTATTTAAATTTTCTACGTAGGAACCCAACACAAAGGAGA
* * *
24891077 CAACAATTTGAGCTATTAACGAACAAAAGAGGAAGCACCAACCATTAGTAGTTGGAACTACCACG
66 CAACAATTTGAGCTAGTAACGAACAAAAGAGGAAGCACCAACCATTAGCAGTTGGAACTACCACA
24891142 ATTAATTGGGTAAC
131 ATTAATTGGGTAAC
24891156 TTCTTTCCGT
Statistics
Matches: 141, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
151 141 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (151 bp):
AGTAAATTTTTAGTTGCTTTGTATTTTATTTAAATTTTCTACGTAGGAACCCAACACAAAGGAGA
CAACAATTTGAGCTAGTAACGAACAAAAGAGGAAGCACCAACCATTAGCAGTTGGAACTACCACA
ATTAATTGGGTAACCATTAGC
Found at i:24893266 original size:22 final size:22
Alignment explanation
Indices: 24893239--24893295 Score: 114
Period size: 22 Copynumber: 2.6 Consensus size: 22
24893229 ATACTAAAGG
24893239 AGTGGTATTGATATTTTCTTAA
1 AGTGGTATTGATATTTTCTTAA
24893261 AGTGGTATTGATATTTTCTTAA
1 AGTGGTATTGATATTTTCTTAA
24893283 AGTGGTATTGATA
1 AGTGGTATTGATA
24893296 CAGCATGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.28, C:0.04, G:0.21, T:0.47
Consensus pattern (22 bp):
AGTGGTATTGATATTTTCTTAA
Found at i:24898399 original size:43 final size:43
Alignment explanation
Indices: 24898334--24898665 Score: 398
Period size: 43 Copynumber: 7.7 Consensus size: 43
24898324 AAAACAGGTT
*
24898334 TTTAGCGGCGCTTTTCCCACAAACGCTGCTATAGACCATGACC
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGACC
* * *
24898377 TTTCGCGGCACTTTTCCCACAAACGCCACTATAGACCATGACC
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGACC
* *
24898420 TTTCA-CGGCGCTTTTTCCACAAACGCTGCTATAGACCATGACC
1 TTT-AGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGACC
* * * *
24898463 TTTCGTGGCGCTTTTACAACAAACGCCGCTATAGACCATGACC
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGACC
* *
24898506 TTTAGCGGCGCTTTTACCACAAACGCCGCTGA-AGAACATGACC
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCT-ATAGACCATGACC
* * * * * *
24898549 TTTAGCTGCACTTTACCCACAAACTCCGCTAAAGAACATGACC
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGACC
* * * * *
24898592 TTTAGCGGCGCTTTACCCACAAATGCCGCTAAAGAACATGATC
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGACC
** *
24898635 TTTAGCGGCGCTTTTATCACAGACGCCGCTA
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTA
24898666 AAAGTACATT
Statistics
Matches: 252, Mismatches: 33, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
42 1 0.00
43 250 0.99
44 1 0.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (43 bp):
TTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCATGACC
Found at i:24900077 original size:2 final size:2
Alignment explanation
Indices: 24900070--24900097 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
24900060 CTATAGGTGA
24900070 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24900098 GAAACAATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24901696 original size:11 final size:11
Alignment explanation
Indices: 24901680--24901705 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24901670 ATTGTAGAAC
24901680 AAAACAAAAAG
1 AAAACAAAAAG
24901691 AAAACAAAAAG
1 AAAACAAAAAG
24901702 AAAA
1 AAAA
24901706 ATGAGGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAACAAAAAG
Found at i:24903147 original size:7 final size:7
Alignment explanation
Indices: 24903135--24903171 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
24903125 AACTCTTAAT
24903135 CCCAAAC
1 CCCAAAC
24903142 CCCAAAC
1 CCCAAAC
24903149 CCCAAAC
1 CCCAAAC
*
24903156 CCCTAAC
1 CCCAAAC
24903163 CCCTAAAC
1 CCC-AAAC
24903171 C
1 C
24903172 TTATTTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 23 0.85
8 4 0.15
ACGTcount: A:0.38, C:0.57, G:0.00, T:0.05
Consensus pattern (7 bp):
CCCAAAC
Found at i:24903253 original size:88 final size:89
Alignment explanation
Indices: 24903139--24903306 Score: 275
Period size: 88 Copynumber: 1.9 Consensus size: 89
24903129 CTTAATCCCA
* *
24903139 AACCCCAAACCCCAAACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAA-ACACTAATT
1 AACCCCAAACCCCAAACCCCTAACCCCTAAACATTATTCAATATATAAATTAAAACACACTAATT
24903203 AATCTAAACCCTAAACGCTAAGCC
66 AATCTAAACCCTAAACGCTAAGCC
* * * *
24903227 AACCCTAAATCCCTAACCCCTAACCCCTAAACATTATTCAATATGTAAATTAAAACACACTAATT
1 AACCCCAAACCCCAAACCCCTAACCCCTAAACATTATTCAATATATAAATTAAAACACACTAATT
24903292 AATCTAAACCCTAAA
66 AATCTAAACCCTAAA
24903307 TCCTAACTTA
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 49 0.67
89 24 0.33
ACGTcount: A:0.45, C:0.30, G:0.02, T:0.23
Consensus pattern (89 bp):
AACCCCAAACCCCAAACCCCTAACCCCTAAACATTATTCAATATATAAATTAAAACACACTAATT
AATCTAAACCCTAAACGCTAAGCC
Found at i:24903321 original size:34 final size:34
Alignment explanation
Indices: 24903283--24903349 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
24903273 AAATTAAAAC
24903283 ACACT-AATTAATCTAAACCCTAAATC-CTAACTTA
1 ACACTGAATTAA--TAAACCCTAAATCTCTAACTTA
* *
24903317 ACACTGAATTCATAAACCTTAAATCTCTAACTT
1 ACACTGAATTAATAAACCCTAAATCTCTAACTT
24903350 TAACCTCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 12 0.41
34 12 0.41
35 5 0.17
ACGTcount: A:0.42, C:0.25, G:0.01, T:0.31
Consensus pattern (34 bp):
ACACTGAATTAATAAACCCTAAATCTCTAACTTA
Found at i:24903419 original size:14 final size:15
Alignment explanation
Indices: 24903400--24903432 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
24903390 CTTAAATCGA
24903400 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
24903414 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
24903429 AATC
1 AATC
24903433 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:24903901 original size:41 final size:41
Alignment explanation
Indices: 24903837--24903930 Score: 143
Period size: 41 Copynumber: 2.3 Consensus size: 41
24903827 AAATGTTTTT
* *
24903837 GTGGTGCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
1 GTGGCGCTTTTTCAAAAACGCCGCTAAAGACCTGAGCATTA
* *
24903878 GTGGCGCTTTTTCAAAAATGCCGCTAAAGATCTGAGCATTA
1 GTGGCGCTTTTTCAAAAACGCCGCTAAAGACCTGAGCATTA
*
24903919 GCGGCGCTTTTT
1 GTGGCGCTTTTT
24903931 TTTAAAACAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (41 bp):
GTGGCGCTTTTTCAAAAACGCCGCTAAAGACCTGAGCATTA
Found at i:24903948 original size:42 final size:41
Alignment explanation
Indices: 24903842--24903948 Score: 115
Period size: 41 Copynumber: 2.6 Consensus size: 41
24903832 TTTTTGTGGT
* * ** *
24903842 GCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGTGGC
1 GCTTTTTCAAAAACACCACTAAAGATCTGAGCATTAGCGGC
** *
24903883 GCTTTTTCAAAAATGCCGCTAAAGATCTGAGCATTAGCGGC
1 GCTTTTTCAAAAACACCACTAAAGATCTGAGCATTAGCGGC
**
24903924 GCTTTTTTTTAAAACACCACTAAAG
1 GC-TTTTTCAAAAACACCACTAAAG
24903949 CCCCGAAAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
41 39 0.70
42 17 0.30
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (41 bp):
GCTTTTTCAAAAACACCACTAAAGATCTGAGCATTAGCGGC
Found at i:24905792 original size:74 final size:73
Alignment explanation
Indices: 24905706--24905845 Score: 178
Period size: 74 Copynumber: 1.9 Consensus size: 73
24905696 CTTCTACCAA
*
24905706 GTATTGATACCAATTTGAGC-TTCAAAG-TTCAGAAAA-AGAGAGCAAAAATCAAAAGTATCGAT
1 GTATTAATACCAATTTGAGCATT-AAAGTTTC-GAAAATAGA-A-CAAAAATCAAAAGTATCGAT
24905768 ACCCATGATCTG
62 ACCCATGATCTG
* * *
24905780 GTATTAATACCAATTTGAGCATTGATGTTTTCGAAAATTGAACAAAAATCAAAAGTATCGATACC
1 GTATTAATACCAATTTGAGCATTAAAG-TTTCGAAAATAGAACAAAAATCAAAAGTATCGATACC
24905845 C
65 C
24905846 TTAACAAAGT
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
74 45 0.78
75 8 0.14
76 5 0.09
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (73 bp):
GTATTAATACCAATTTGAGCATTAAAGTTTCGAAAATAGAACAAAAATCAAAAGTATCGATACCC
ATGATCTG
Found at i:24905869 original size:20 final size:20
Alignment explanation
Indices: 24905831--24905869 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24905821 ACAAAAATCA
*
24905831 AAAGTATCGATACCCTTAAC
1 AAAGTATCGATACACTTAAC
* *
24905851 AAAGTATTGATACATTTAA
1 AAAGTATCGATACACTTAA
24905870 AACATTATTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (20 bp):
AAAGTATCGATACACTTAAC
Found at i:24906941 original size:17 final size:17
Alignment explanation
Indices: 24906921--24906969 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 17
24906911 ATAAAATATT
*
24906921 TAACATTTTTGTTACAA
1 TAACATTTTTATTACAA
24906938 TAACCATTTGATTATTACAA
1 TAA-CATTT--TTATTACAA
24906958 TAAC-TTTTTATT
1 TAACATTTTTATT
24906970 TTAGTTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 5 0.18
17 3 0.11
18 8 0.29
19 1 0.04
20 11 0.39
ACGTcount: A:0.35, C:0.12, G:0.04, T:0.49
Consensus pattern (17 bp):
TAACATTTTTATTACAA
Found at i:24907381 original size:41 final size:41
Alignment explanation
Indices: 24907322--24907521 Score: 296
Period size: 41 Copynumber: 4.9 Consensus size: 41
24907312 GACTTTTCGG
*
24907322 GGGCTTTAGCGGCATTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
24907363 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* * *
24907404 GGGATTTAGCGGTGTTTTTATTTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* * *
24907445 GGGATTTAGTGACGTTTTTA-GTTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATG-TAAGCGCCGCTAATGTTCT
*
24907486 GGGCTTTAGCGGCGTTTTTAT-TGATGCGCCGCTAAT
1 GGGCTTTAGCGGCGTTTTTATGT-AAGCGCCGCTAAT
24907522 TCGCAGGCCT
Statistics
Matches: 144, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
40 1 0.01
41 143 0.99
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.38
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
Found at i:24907586 original size:123 final size:123
Alignment explanation
Indices: 24907326--24907586 Score: 307
Period size: 123 Copynumber: 2.1 Consensus size: 123
24907316 TTTCGGGGGC
*
24907326 TTTAGCGGCATTTTTATGTAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCG
1 TTTAGTGGCATTTTTATGTAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCG
* * * * ** * *
24907391 CCGCTAATGTTCTGGGATTTAGCGGTGTTTTTATTTAAGCGCCGCTAATGTTCTGGGA
66 CCGCTAATGTGCAGGCATTTAGCGGCGTTTTTATAAAAACGCCGCTAATGCTCTGGGA
* * *
24907449 TTTAGTGACGTTTTTA-GTTAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTAT-TGATG
1 TTTAGTGGCATTTTTATG-TAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGT-AAG
* **
24907512 CGCCGCTAAT-TCGCAGGCCTTTAGCGGCGCTTTTT-TAAAAAACGCCGCTAATGCTCT-TTA
64 CGCCGCTAATGT-GCAGGCATTTAGCGGCG-TTTTTAT-AAAAACGCCGCTAATGCTCTGGGA
24907572 TTTAGTGGCATTTTT
1 TTTAGTGGCATTTTT
24907587 GGAAAGCGCC
Statistics
Matches: 116, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
122 3 0.03
123 92 0.79
124 21 0.18
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.39
Consensus pattern (123 bp):
TTTAGTGGCATTTTTATGTAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCG
CCGCTAATGTGCAGGCATTTAGCGGCGTTTTTATAAAAACGCCGCTAATGCTCTGGGA
Found at i:24907977 original size:16 final size:16
Alignment explanation
Indices: 24907956--24908025 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
24907946 CTATAGTATG
24907956 TAGTTTAAGGGTTTTA
1 TAGTTTAAGGGTTTTA
*
24907972 TAGTTTAA-GGTTTAA
1 TAGTTTAAGGGTTTTA
** * *
24907987 T-GTTTACTATAG-TATG
1 TAGTTTA--AGGGTTTTA
24908003 TAGTTTAAGGGTTTTA
1 TAGTTTAAGGGTTTTA
24908019 TAGTTTA
1 TAGTTTA
24908026 TGGTTTAGGG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
14 5 0.12
15 9 0.22
16 20 0.50
17 6 0.15
ACGTcount: A:0.27, C:0.01, G:0.21, T:0.50
Consensus pattern (16 bp):
TAGTTTAAGGGTTTTA
Found at i:24907984 original size:23 final size:23
Alignment explanation
Indices: 24907958--24908038 Score: 80
Period size: 23 Copynumber: 3.5 Consensus size: 23
24907948 ATAGTATGTA
24907958 GTTTAAGGGTTTTATAGTTTAAG
1 GTTTAAGGGTTTTATAGTTTAAG
*
24907981 GTTTAA-TGTTTACTATAGTATGT-A-
1 GTTTAAGGGTTT--TATAGT-T-TAAG
*
24908005 GTTTAAGGGTTTTATAGTTTATG
1 GTTTAAGGGTTTTATAGTTTAAG
24908028 GTTT-AGGGTTT
1 GTTTAAGGGTTT
24908039 GTTATATTGA
Statistics
Matches: 48, Mismatches: 3, Indels: 15
0.73 0.05 0.23
Matches are distributed among these distances:
21 1 0.02
22 12 0.25
23 16 0.33
24 12 0.25
25 6 0.12
26 1 0.02
ACGTcount: A:0.23, C:0.01, G:0.25, T:0.51
Consensus pattern (23 bp):
GTTTAAGGGTTTTATAGTTTAAG
Found at i:24908073 original size:22 final size:21
Alignment explanation
Indices: 24908048--24908089 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
24908038 TGTTATATTG
24908048 AGTTTGTGA-TTTAGTGTTTTAA
1 AGTTTG-GAGTTTAGT-TTTTAA
24908070 AGTTTGGAGTTTAGTTTTTA
1 AGTTTGGAGTTTAGTTTTTA
24908090 TAGTCAGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (21 bp):
AGTTTGGAGTTTAGTTTTTAA
Found at i:24912181 original size:29 final size:29
Alignment explanation
Indices: 24912139--24912196 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
24912129 TAAATCTTCT
24912139 TCCATTTGTCAACTATTTCATTTCCAAAA
1 TCCATTTGTCAACTATTTCATTTCCAAAA
24912168 TCCATTTGTCAACTATTTCATTTCCAAAA
1 TCCATTTGTCAACTATTTCATTTCCAAAA
24912197 ATATATTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (29 bp):
TCCATTTGTCAACTATTTCATTTCCAAAA
Found at i:24912357 original size:9 final size:9
Alignment explanation
Indices: 24912345--24912382 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
24912335 ACTTACGTAT
24912345 TTTACATAA
1 TTTACATAA
24912354 TTTACATAA
1 TTTACATAA
24912363 -TT-CATAA
1 TTTACATAA
*
24912370 TTTACAAAA
1 TTTACATAA
24912379 TTTA
1 TTTA
24912383 AATATATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
7 5 0.19
8 4 0.15
9 17 0.65
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (9 bp):
TTTACATAA
Found at i:24912370 original size:16 final size:16
Alignment explanation
Indices: 24912349--24912380 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24912339 ACGTATTTTA
*
24912349 CATAATTTACATAATT
1 CATAATTTACAAAATT
24912365 CATAATTTACAAAATT
1 CATAATTTACAAAATT
24912381 TAAATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (16 bp):
CATAATTTACAAAATT
Found at i:24912628 original size:9 final size:9
Alignment explanation
Indices: 24912596--24912749 Score: 114
Period size: 9 Copynumber: 16.9 Consensus size: 9
24912586 NNNNNNNNNN
24912596 TAACTTACA
1 TAACTTACA
*
24912605 TAAATTA-A
1 TAACTTACA
24912613 GTAACTTACA
1 -TAACTTACA
24912623 TAACTTACA
1 TAACTTACA
*
24912632 TAAACTTGCA
1 T-AACTTACA
* *
24912642 TAAATTAAA
1 TAACTTACA
24912651 TAACTTACA
1 TAACTTACA
*
24912660 TAACCTACA
1 TAACTTACA
* *
24912669 TAAATTTCAA
1 TAACTTAC-A
***
24912679 TGGGTTACA
1 TAACTTACA
24912688 TAACTTACA
1 TAACTTACA
* * *
24912697 TAGCCTATA
1 TAACTTACA
* *
24912706 TAAATTAAA
1 TAACTTACA
24912715 TAACTTACA
1 TAACTTACA
24912724 TAACTTACA
1 TAACTTACA
*
24912733 TAAATTA-A
1 TAACTTACA
24912741 GTAACTTAC
1 -TAACTTAC
24912750 CCGTGCAAAT
Statistics
Matches: 109, Mismatches: 30, Indels: 11
0.73 0.20 0.07
Matches are distributed among these distances:
8 2 0.02
9 93 0.85
10 14 0.13
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.33
Consensus pattern (9 bp):
TAACTTACA
Done.