Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_415 ID=scaffold_415-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7862
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.28

Warning! 580 characters in sequence are not A, C, G, or T


Found at i:2845 original size:42 final size:42

Alignment explanation


    Indices: 2781--2863  Score: 139
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       2771 GTTTTCCTTC

                    *     *  *                        
       2781 CCTTCAATTTCGACCAGCAGTTGAATAAAGAAGAAATTTTTT
          1 CCTTCAATCTCGACAAGAAGTTGAATAAAGAAGAAATTTTTT

                                                     
       2823 CCTTCAATCTCGACAAGAAGTTGAATAAAGAAGAAATTTTT
          1 CCTTCAATCTCGACAAGAAGTTGAATAAAGAAGAAATTTTT

       2864 ACTTTATTTT


Statistics
Matches: 38,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  42   38  1.00

ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31


Consensus pattern (42 bp):   
CCTTCAATCTCGACAAGAAGTTGAATAAAGAAGAAATTTTTT
Done.