Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_433 ID=scaffold_433-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7552
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.27
Warning! 469 characters in sequence are not A, C, G, or T
Found at i:3655 original size:8 final size:9
Alignment explanation
Indices: 3634--3681 Score: 71
Period size: 9 Copynumber: 5.3 Consensus size: 9
3624 AGTTCAGACA
*
3634 AAAAAAATT
1 AAAAAAATC
3643 AAAAAAATC
1 AAAAAAATC
3652 AAAAAAAATC
1 -AAAAAAATC
3662 -AAAAAATC
1 AAAAAAATC
3670 AAAAAAATC
1 AAAAAAATC
3679 AAA
1 AAA
3682 GTCAAAATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
8 8 0.22
9 19 0.53
10 9 0.25
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAAATC
Found at i:6077 original size:88 final size:88
Alignment explanation
Indices: 5887--6514 Score: 960
Period size: 88 Copynumber: 7.2 Consensus size: 88
5877 TTAGTTGCAG
* * ** * * *
5887 TGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAA-A-ACA
1 TGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACA
*
5950 AACCTTGCCTCTCTTGGTTGTGA
66 AACCTTGCCTCTCTCGGTTGTGA
* * * *
5973 TGGAGCTGGTTAAAGACAAAAGAGCTTGCCTTCCTGCATTGACAGCGAAGCAAGTCGAATACACA
1 TGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACA
6038 AACCTTGCCTCTCTCGGTTGTGA
66 AACCTTGCCTCTCTCGGTTGTGA
* *
6061 TGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCTTGTATTGACAGCGAAGCAGGTCGAAGACACA
1 TGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACA
6126 AACCTTGCCTCTCTCGGTTGTGA
66 AACCTTGCCTCTCTCGGTTGTGA
* * * *
6149 TGGAGCTGGTTAAAGGCAAAAGAGCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACA
1 TGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACA
6214 AACCTTGCCTCTCTCGGTTGTGA
66 AACCTTGCCTCTCTCGGTTGTGA
* *
6237 TGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCTTGTATTGACAGCGAAGCAGGTCGAAGACACA
1 TGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACA
6302 AACCTTGCCTCTCTCGGTTGTGA
66 AACCTTGCCTCTCTCGGTTGTGA
* *
6325 TGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACGGCGAAGTAGGTCGAAGACACA
1 TGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACA
*
6390 AACCTTGCCTCCCTCGGTTGTGA
66 AACCTTGCCTCTCTCGGTTGTGA
* * *
6413 TGGAGCTGGTTGAAGACAACAGATCTTGCCTTCTTGCATTGACAGCGAAGCAGGTCGAAG--ACG
1 TGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACA
*
6476 AACCTTACCTCTCTCGGTTGT-A
66 AACCTTGCCTCTCTCGGTTGTGA
*
6498 GTGGAGCTGGCTGAAGA
1 -TGGAGCTGGTTGAAGA
6515 ATTTCAGATC
Statistics
Matches: 499, Mismatches: 40, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
85 1 0.00
86 87 0.17
87 1 0.00
88 410 0.82
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (88 bp):
TGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACA
AACCTTGCCTCTCTCGGTTGTGA
Found at i:6671 original size:41 final size:42
Alignment explanation
Indices: 6611--7550 Score: 589
Period size: 41 Copynumber: 21.7 Consensus size: 42
6601 AAATTAAGGA
* * *
6611 TCTTATCTCTCTGAAGTTACAATAGAGTAGATCG-CGTCAGG
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAGG
* * * * *
6652 TCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGACTTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATC---GAC-GTCAGG
** * * *
6698 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACAGG
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAGG
* * * *
6740 ATCTTATCTCTCTGAAGTTACAGTAGACTAGATCG-CATCAGG
1 -TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAGG
* * *
6782 TCTTATCTCCCTGAGGTTACAGTAGAGTAGACTGAAGACTTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGA-T--CGAC-GTCAGG
* * * * *
6828 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGACAGA
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAGG
* * *
6870 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG-CATCAGG
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAGG
* * * *
6911 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATC---GAC-GTCAGG
** * * * **
6957 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAA
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCA-GG
* * * ** * ** ** *
7000 TCCTATCTCCCTGAAGTTACAGTGGAGCGGGTTAAAATAAAGG
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGT-CAGG
* * * **
7043 ATCTTATCTCTCTGAAGTTACAGTAGAGCAGATC-ACACCAGG
1 -TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAGG
* * *
7085 TCTTATCTCCCTGAGGTTACAGTAGAGTAGACCGAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACG----TCAGG
* * ** * * ** * *
7131 TCTTATATCCCTGAGATTACAGCGGAGCAGATTGAATTTAGTAA
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAG--G
* * * * ** ** *
7175 TCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAAGG
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGT-CAGG
* * *
7218 ATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCG-CGTCAGG
1 -TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAGG
* * * *
7260 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATC---GAC-GTCAGG
** * * *
7306 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACAGG
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAGG
* * *
7348 ATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCG-CGTCAGG
1 -TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAGG
* * * *
7390 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATC---GAC-GTCAGG
** * * *
7436 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACAGG
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAGG
* * *
7478 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG-CATCAGG
1 -TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAGG
7520 TCTTATCTCCCTGAGGTTACAGTAGAGTAGA
1 TCTTATCTCCCTGAGGTTACAGTAGAGTAGA
7551 CT
Statistics
Matches: 698, Mismatches: 161, Indels: 80
0.74 0.17 0.09
Matches are distributed among these distances:
41 201 0.29
42 69 0.10
43 130 0.19
44 90 0.13
45 8 0.01
46 200 0.29
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (42 bp):
TCTTATCTCCCTGAGGTTACAGTAGAGTAGATCGACGTCAGG
Found at i:6719 original size:46 final size:45
Alignment explanation
Indices: 6517--7550 Score: 702
Period size: 46 Copynumber: 23.8 Consensus size: 45
6507 GCTGAAGAAT
* * * *
6517 TTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG--
1 TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * * * *
6560 TT-AGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGAT-TAA-AA
1 TTCAG--ATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * * * *
6604 TTAAGGATCTTATCTCTCTGAAGTTACAATAGAGTAGATC---G-C
1 TTCA-GATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * * *
6646 GTCAGGTCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAGAC
1 TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* *
6691 TTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGA-
1 -TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * * *
6736 --CAGGATCTTATCTCTCTGAAGTTACAGTAGACTAGATC---G-C
1 TTCA-GATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * *
6776 ATCAGGTCTTATCTCCCTGAGGTTACAGTAGAGTAGA-CTGAAGAC
1 TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATC-GAAGAC
*
6821 TTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGA-
1 -TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * *
6866 --CAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC---G-C
1 TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * *
6905 ATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAC
1 TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* *
6950 TTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
1 -TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * * ** * * *
6996 AT-A-ATCCTATCTCCCTGAAGTTACAGTGGAGCGGGT-TAA-AA
1 TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
** * * * * *
7037 TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATC--ACAC
1 TTCA-GATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * * *
7081 --CAGGTCTTATCTCCCTGAGGTTACAGTAGAGTAGACCGAAGAAT
1 TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAG-AC
* * * * *
7125 TTCAGATCTTATATCCCTGAGATTACAGCGGAGCAGATTG-A-A-
1 TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * * * * *
7167 TTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGAT-TAA-AA
1 TTCAG--ATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
** * * **
7212 TGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATC---G-C
1 TTCA-GATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * *
7254 GTCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAC
1 TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* *
7299 TTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGA-
1 -TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * **
7344 --CAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATC---G-C
1 TTCA-GATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * *
7384 GTCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAC
1 TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* *
7429 TTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGA-
1 -TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * *
7474 --CAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC---G-C
1 TTCA-GATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
* * *
7514 ATCAGGTCTTATCTCCCTGAGGTTACAGTAGAGTAGA
1 TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGA
7551 CT
Statistics
Matches: 782, Mismatches: 142, Indels: 136
0.74 0.13 0.13
Matches are distributed among these distances:
39 1 0.00
40 4 0.01
41 208 0.27
42 58 0.07
43 125 0.16
44 149 0.19
45 10 0.01
46 226 0.29
47 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (45 bp):
TTCAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAC
Found at i:6754 original size:130 final size:130
Alignment explanation
Indices: 6607--7022 Score: 726
Period size: 130 Copynumber: 3.2 Consensus size: 130
6597 ATTAAAATTA
* * *
6607 AGGATCTTATCTCTCTGAAGTTACAATAGAGTAGATCGCGTCAGGTCTTATCTCCTTGAGGTTAC
1 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTAC
6672 AGTGGAGTAGACCGAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
66 AGTGGAGTAGACCGAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
*
6737 AGGATCTTATCTCTCTGAAGTTACAGTAGACTAGATCGCATCAGGTCTTATCTCCCTGAGGTTAC
1 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTAC
* * *
6802 AGTAGAGTAGACTGAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGAC
66 AGTGGAGTAGACCGAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
6867 A-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTAC
1 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTAC
6931 AGTGGAGTAGACCGAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
66 AGTGGAGTAGACCGAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
** * *
6996 ATAATCCTATCTCCCTGAAGTTACAGT
1 AGGATCTTATCTCTCTGAAGTTACAGT
7023 GGAGCGGGTT
Statistics
Matches: 271, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
129 125 0.46
130 146 0.54
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (130 bp):
AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTAC
AGTGGAGTAGACCGAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
Found at i:7271 original size:175 final size:174
Alignment explanation
Indices: 6777--7370 Score: 818
Period size: 175 Copynumber: 3.4 Consensus size: 174
6767 CTAGATCGCA
* ** * * *
6777 TCAGGTCTTATCTCCCTGAGGTTACAGTAGAGTAGA-CTGAAGACTTTCAGATCTTATCTCCCTG
1 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATC-GAAGAC-AT-A-ATCCTATCTCCCTG
* * ** * *
6841 AGGTTACAGTGGAGCAGA-TCGAAGACA-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
62 AAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG
6904 CATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTT
127 CATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTT
6952 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGT
1 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGT
* * * *
7017 TACAGTGGAGCGGGTTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCACACC
66 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
* *
7082 AGGTCTTATCTCCCTGAGGTTACAGTAGAGTAGACCGAAGAATT
131 AGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTT
* * * ***
7126 TCAGATCTTATATCCCTGAGATTACAGCGGAGCAGATTGAATTTAGTAATCCTATCTCCCTG-AG
1 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACA-TAATCCTATCTCCCTGAAG
* * * *
7190 ATTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCG
65 -TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
7255 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTT
129 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTT
** * *
7301 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACAGGATCTTATCTCTCTGAAGT
1 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGT
7366 TACAG
66 TACAG
7371 CAGAGTAGAT
Statistics
Matches: 369, Mismatches: 44, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
172 28 0.08
173 6 0.02
174 139 0.38
175 195 0.53
176 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (174 bp):
TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGT
TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
AGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTT
Found at i:7364 original size:130 final size:130
Alignment explanation
Indices: 7215--7551 Score: 647
Period size: 130 Copynumber: 2.6 Consensus size: 130
7205 ATTAAAATGA
7215 AGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGGTTAC
1 AGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGGTTAC
7280 AGTGGAGTAGACCGAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
66 AGTGGAGTAGACCGAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
7345 AGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGGTTAC
1 AGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGGTTAC
7410 AGTGGAGTAGACCGAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
66 AGTGGAGTAGACCGAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
* *
7475 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTAC
1 AGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGGTTAC
*
7540 AGTAGAGTAGAC
66 AGTGGAGTAGAC
7552 T
Statistics
Matches: 204, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
130 204 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (130 bp):
AGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGGTTAC
AGTGGAGTAGACCGAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
Done.