Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_438 ID=scaffold_438-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9267
ACGTcount: A:0.19, C:0.18, G:0.18, T:0.20
Warning! 2268 characters in sequence are not A, C, G, or T
Found at i:153 original size:88 final size:88
Alignment explanation
Indices: 1--1543 Score: 2170
Period size: 88 Copynumber: 17.5 Consensus size: 88
* * *
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCTATGCAGGAAGCCATGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
* *
66 GTTGTCCTCAACCACCTCCATCA
66 GTTGTCTTCAACCAGCTCCATCA
* * * *
89 CAACCGAGAGAGGCAAGATTTGTGTCTTTGACCTGCTTCGCTGTCAATACAGGAAGGCAGGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
154 GTTGTCTTCAACCAGCTCCATCA
66 GTTGTCTTCAACCAGCTCCATCA
* * * **
177 CAACCGAGGGAGGCAAAGTTTGTGTCCTCGACCTGCTTCGCTGTCAATGCAGGAACACAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
*
242 TTTGTCTTCAACCAGCTCCATCA
66 GTTGTCTTCAACCAGCTCCATCA
* * *
265 CAATCGAAAGAGGTAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
*
330 TTTGTC-TCAACCAGCTCCATCA
66 GTTGTCTTCAACCAGCTCCATCA
*
352 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCTATGCAGGGAAGGCAAGATC
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCA-GGAAGGCAAGATC
417 TGCTT-TCTTCAACCAGCTCCATCA
65 TG-TTGTCTTCAACCAGCTCCATCA
*
441 CAACCGAGAGAGGCAAAGGTTTGTGTCTTTCGACCTGCTTCGCTGTCTATGCAGGAAGGCAAAGA
1 CAACCGAGAGAGGC-AAGGTTTGTGTC-TTCGACCTGCTTCGCTGTCAATGCAGGAAGGC-AAGA
* *
506 TCTGTTGTCCTCAACCACCTCCATCA
63 TCTGTTGTCTTCAACCAGCTCCATCA
* * *
532 CAACCGAGAGAGGCAAAGGTTTGTGTCTTTGACCCTACTTCGCTGTCAATACAGGAAGGCAAGAT
1 CAACCGAGAGAGGC-AAGGTTTGTGTCTTCGA-CCTGCTTCGCTGTCAATGCAGGAAGGCAAGAT
* * ** *
597 TTTTTCCCTT-AACCCATCTCCATCA
64 CTGTTGTCTTCAA-CCAGCTCCATCA
* * *
622 CAACCGAGAGAGGCAAGGTTTGAT-T-TTCGACCT-CTTTTG-TCTCAATCCAGGAAGGCAAGAT
1 CAACCGAGAGAGGCAAGGTTTG-TGTCTTCGACCTGC-TTCGCTGTCAATGCAGGAAGGCAAGAT
* * *
683 ATGCTGTCTTCAACTAGCTCCATCA
64 CTGTTGTCTTCAACCAGCTCCATCA
* *
708 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
*
773 GCTGTCTTCAACCAGCTCCATCA
66 GTTGTCTTCAACCAGCTCCATCA
* * * * *
796 C-ACTGAGGGAGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATACAAGAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
*
860 ACTT-TCTTCAACCAGCTCCATCA
66 -GTTGTCTTCAACCAGCTCCATCA
* *
883 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCTATGCAGGAAGGCATGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
* *
948 GTTGTCCTCAACCACCTCCATCA
66 GTTGTCTTCAACCAGCTCCATCA
* * * * * *
971 CAACTGAGAGAGGCAAGATTTGTGTCTTTGTCCTGCTTCGCTGTCAATACAGGAAGGCAGGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
*
1036 GTTGTCTTCAACCAGCCCCATCA
66 GTTGTCTTCAACCAGCTCCATCA
* * * *
1059 CAACCGAGGGAGGCAAAGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCAGGAACGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
*
1124 TTTGTCTTCAACCAGCTCCATCA
66 GTTGTCTTCAACCAGCTCCATCA
* * *
1147 CAATCGAGAGAGGTAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
*
1212 TTTGTCTTCAACCAGCTCCATCA
66 GTTGTCTTCAACCAGCTCCATCA
* *
1235 CAACCGAGAGAAGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
*
1300 GCTGTCTTCAACCAGCTCCATCA
66 GTTGTCTTCAACCAGCTCCATCA
* * *
1323 CAACCGAGAGAGACAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCTA-GAAGGCAAGATC
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGC-AGGAAGGCAAGATC
* **
1387 TTTTGTCTTCAACCAGCTTTATCA
65 TGTTGTCTTCAACCAGCTCCATCA
* * * * *
1411 CAACCGAGGGAGGTAAGGTTTGTGTCTTCGATCTGCTTCGTTGTCAACGCAGGAAGGCAAGATCT
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
*
1476 TTTGTCTTCAACCAGCTCCATCA
66 GTTGTCTTCAACCAGCTCCATCA
*
1499 CAACCGAGAGAGGCAAGGTTTGTGTCGTCGACCTGCTTCGCTGTC
1 CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTC
1544 NNNNNNNNNN
Statistics
Matches: 1298, Mismatches: 136, Indels: 42
0.88 0.09 0.03
Matches are distributed among these distances:
85 1 0.00
86 59 0.05
87 162 0.12
88 870 0.67
89 44 0.03
90 61 0.05
91 101 0.08
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (88 bp):
CAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
GTTGTCTTCAACCAGCTCCATCA
Found at i:292 original size:43 final size:43
Alignment explanation
Indices: 244--469 Score: 120
Period size: 44 Copynumber: 5.1 Consensus size: 43
234 CAAGATCTTT
*
244 TGTCTTCAACCAGCTCCATCACAATCGAAAGAGGTAAGGTTTG
1 TGTCTTCAACCAGCTCCATCACAATCGAAAGAGGCAAGGTTTG
* * ** * * * *
287 TGTCTTCGACCTGCTTCGC-TGTCAAT-GCAGGAAGGCAAGATCTTT
1 TGTCTTCAACCAGC-TC-CATCACAATCGAAAG-AGGCAAGGT-TTG
* *
332 TGTC-TCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTG
1 TGTCTTCAACCAGCTCCATCACAATCGAAAGAGGCAAGGTTTG
* * ** * ** * *
374 TGTCTTCGACCTGCTTCGC-TGTCTAT-GCAGGGAAGGCAAGATCTG
1 TGTCTTCAACCAGC-TC-CATCACAATCG-AAAG-AGGCAAGGTTTG
* * *
419 CTTTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAAGGTTTG
1 -TGTCTTCAACCAGCTCCATCACAATCGAAAGAGGC-AAGGTTTG
464 TGTCTT
1 TGTCTT
470 TCGACCTGCT
Statistics
Matches: 129, Mismatches: 39, Indels: 29
0.65 0.20 0.15
Matches are distributed among these distances:
42 7 0.05
43 37 0.29
44 41 0.32
45 32 0.25
46 12 0.09
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (43 bp):
TGTCTTCAACCAGCTCCATCACAATCGAAAGAGGCAAGGTTTG
Found at i:766 original size:44 final size:44
Alignment explanation
Indices: 718--1471 Score: 161
Period size: 44 Copynumber: 17.2 Consensus size: 44
708 CAACCGAGAG
*
718 AGGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGA
* * * * * * *
762 AGGCAAGATCTGCTGTCTTCAACCAG-CTC-C-ATCACACTG-AGGG
1 AGGCAAGGTTTG-TGTCTTCGACCTGATTCGCTGTCA-A-TGCAGGA
* *
805 AGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATACAAGA
1 AGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGA
* ** * * * * * * *
849 AGGCAAGATCTACTTTCTTCAACCAG-CTC-C-ATCACA-ACCGAGA
1 AGGCAAGGT-TTGTGTCTTCGACCTGATTCGCTGTCA-ATGCAG-GA
* *
892 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCTATGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGA
* * * * * * **
937 AGGCATGATCTGTTGTCCTCAACC--ACCTC-CATCACAACTG-A-GA
1 AGGCAAGGTTTG-TGTCTTCGACCTGA-TTCGC-TGTCAA-TGCAGGA
* * * * *
980 GAGGCAAGATTTGTGTCTTTGTCCTGCTTCGCTGTCAATACAGGA
1 -AGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGA
* * * * ** ** *
1025 AGGC-AGGATCTGTTGTCTTCAACC--A-GCCCCATCACAACCGAGGG
1 AGGCAAGG-TTTG-TGTCTTCGACCTGATTCGCTGTCA-ATGC-AGGA
* * *
1069 AGGCAAAGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGA
* * * * * * **
1113 ACGCAAGATCTTTTGTCTTCAACCAG-CTC-CATCACAAT-C-GAGA
1 AGGCAAGGT-TTGTGTCTTCGACCTGATTCGC-TGTCAATGCAG-GA
* * *
1156 GAGGTAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGA
* * * * * * **
1201 AGGCAAGATCTTTTGTCTTCAACCAG-CTC-C-ATCACAACCGAGAGA
1 AGGCAAGGT-TTGTGTCTTCGACCTGATTCGCTGTCA-ATGC-AG-GA
* *
1246 A-GCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGA
* * * * * * * *
1289 AGGCAAGATCTGCTGTCTTCAACCAG-CTC-C-ATCACA-ACCGAGA
1 AGGCAAGGTTTG-TGTCTTCGACCTGATTCGCTGTCA-ATGCAG-GA
* *
1332 GAGACAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCTA-GA
1 -AGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGC-AGGA
* * * * * * ** *
1377 AGGCAAGATCTTTTGTCTTCAACCAGCTT---TATCACAACCGAGGG
1 AGGCAAGGT-TTGTGTCTTCGACCTGATTCGCTGTCA-ATGC-AGGA
* * * * *
1421 AGGTAAGGTTTGTGTCTTCGATCTGCTTCGTTGTCAACGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGA
1465 AGGCAAG
1 AGGCAAG
1472 ATCTTTTGTC
Statistics
Matches: 483, Mismatches: 163, Indels: 128
0.62 0.21 0.17
Matches are distributed among these distances:
42 37 0.08
43 124 0.26
44 182 0.38
45 119 0.25
46 21 0.04
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (44 bp):
AGGCAAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATGCAGGA
Found at i:3773 original size:45 final size:44
Alignment explanation
Indices: 3722--3861 Score: 115
Period size: 44 Copynumber: 3.2 Consensus size: 44
3712 GCAAGGTTTG
*
3722 TGTCTTCGATCTGATTTGCTGTCAATGCAGGAAGGCAAGATCTGT
1 TGTCTTCGATCTGCTTTGCTGTCAA-GCAGGAAGGCAAGATCTGT
* * * * ** * * * *
3767 TGTCTTCAACCAGCTTT-ATCACAACCGAGGGAGGTAATG-TTTG-
1 TGTCTTCGATCTGCTTTGCTGTCAAGC-AGGAAGGCAA-GATCTGT
*
3810 TGTCTTCGATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGT
1 TGTCTTCGATCTGCTTTGCTGTCAA-GCAGGAAGGCAAGATCTGT
3855 TGTCTTC
1 TGTCTTC
3862 AACCAGCTCC
Statistics
Matches: 67, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
43 15 0.22
44 30 0.45
45 22 0.33
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (44 bp):
TGTCTTCGATCTGCTTTGCTGTCAAGCAGGAAGGCAAGATCTGT
Found at i:3809 original size:88 final size:88
Alignment explanation
Indices: 3645--8981 Score: 6373
Period size: 88 Copynumber: 60.6 Consensus size: 88
3635 NNNNNNNNNT
* *
3645 TGCTTCGTTGTCAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
3710 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * ** *
3733 TGATTTGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTTTATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * *
3798 AGGTAATGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
*
3821 TGCTTCGCTGTCAACGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
3886 AGGCAAGGTTTGTGTCGTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
3909 TGCTTCGCTGTCACTGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
3974 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
** * *
3997 TAATTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCAGAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* **
4062 AGGCAAGGTTTGTGTCTTTGAAT
66 AGGCAAGGTTTGTGTCTTCGACC
** * * *
4085 TGCTTCGCTGTCAATATAGGAAGGCAGGATCCGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
4150 AGGCAAAGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
4173 TGCTTCGCTGTCAATGCAGGTACGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* *
4238 TGG-ATAGGTTTGTGTATTCGACC
66 AGGCA-AGGTTTGTGTCTTCGACC
*
4261 TGCCTCGCTAGTCGAATGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGA
1 TGCTTCGCT-GTC-AAT-GCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGA
*
4326 GAGAGGC-AGGTTTGTGTCTTCAACC
63 GAGAGGCAAGGTTTGTGTCTTCGACC
* * * * *
4351 TGCTTCGCTGTCAATCGAACGGAAGGCAAGATCCGTTGTCTTCTACAAGCTCAATCACAACCGAG
1 TGCTTCGCTGTCAAT-GCA-GGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAG
*
4416 AGAGGCAAGGTTTGTGTCTTTGACC
64 AGAGGCAAGGTTTGTGTCTTCGACC
* *
4441 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
4506 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
4529 TGATTCGCTGTTAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
4594 AGGCAAGGTTTGTGTCTTTGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * ** *
4617 TGCTTCTCTGTCAATACAGGAAGGCGGGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
4682 AGGCAAAGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
*
4705 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACAGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
4770 AGGCAAGGTTTGTGTCTTCAACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * * *
4793 TCCTTCACTGTCAATGGAGGAAGGCAAGATCTATTGTCTTCAACAAGCTCAATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
4858 AGGCAAGGTTTGTGTCTTTGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
4881 TGCATCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAATCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * *
4946 AGGCAGGGCTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
4969 TGATTCGCTGTCAATGCAGGAAGGTAAGAT-T-TTG-CCTCAACCAGCTCTATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
5031 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
5054 TGCTTCGCTGTCAATACAAGAAGGCAAGATATGCTT-TCTTCATCCAGCTCCATCACAACCGAGA
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTG-TTGTCTTCAACCAGCTCCATCACAACCGAGA
5118 GAGGCAAGGTTTGTGTCTTCGAACC
65 GAGGCAAGGTTTGTGTCTTCG-ACC
* * *
5143 TGCTTCGCTGTCAATGCCGGAAGGTAAGATCTGTTGTCCTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
5208 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
5231 TGCTTCGCAGTCAATGCAGGAAGGCATGATCTGTTGTCTTCAACCAGCTCCATCACAACCGGGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
5296 AGGCACGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
5319 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
5384 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * ** * *
5407 CGCTTCGCTGTCAATGTAGAAAGGCAAGATCTGTTGTCTTCAACCAAATCCATCACAACTGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * *
5472 AGGCAAGGTTAGTGTCTTTGACA
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
5495 TGCTTCCCTGACAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCCAGCTCCATCACAACCGAGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAA-CCAGCTCCATCACAACCGAGA
5560 GAGGCAAGGTTTGTGTCTTCGACC
65 GAGGCAAGGTTTGTGTCTTCGACC
* *
5584 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGGTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* *
5649 AGGCAAGGTTTGTGTCTTTGACA
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
5672 TGCTTCCCTGACAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * *
5737 AGGCAGGGCTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * * *
5760 GGATTCGCTGTCAATGCAGGAAGGCAAGATTTTTTGTCTTCAACCAGCTCCATCACAACTGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
5825 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
5848 TGCTTCGCTGTCAATGCAGGAAGGCAGGATCTTTTGTCTTCAATCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
5913 AGGCAAGGTTTGTGTCTTCGACT
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * *
5936 TGCTTCGCTGTCAATGCAGGATGGCAAGATCTGTTCTCTTCAACCAGCTCTATCATAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
6001 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
6024 TGCTTCGCTGTCAATGCAGGAACGCAAGATCTTTTGTCTTCAACCAGGTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
6089 AGG-ATAGGTTTGTGTATTCGACC
66 AGGCA-AGGTTTGTGTCTTCGACC
* *
6112 TGCCTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCAAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* *
6177 AGGTAAGGTTTGTGTCTTCAACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *************************************
6200 TGCTTCGCTGTCAATGAAGGAAGGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
***********************
6265 NNNNNNNNNNNNNNNNNNNNNNN
66 AGGCAAGGTTTGTGTCTTCGACC
*****************************************************************
6288 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
***********************
6353 NNNNNNNNNNNNNNNNNNNNNNN
66 AGGCAAGGTTTGTGTCTTCGACC
******************** * * * * *
6376 NNNNNNNNNNNNNNNNNNNNAAGGTAAGATTTTTTGTCTTCAACCAGCTCCATCACAACTGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
6441 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
6464 TGCTTCGCTGTCAATGCAGGAAGGCAGGATCTTTTGTCTTCAATCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
6529 AGGCAATGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
6552 TGCTTCGCTGTCAATGCAGGATACGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAGA
1 TGCTTCGCTGTCAATGCAGGA-AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGA
* *
6617 AAGG-ATAGGTTTGTGTATTCGACC
65 GAGGCA-AGGTTTGTGTCTTCGACC
* *
6641 TGCCTCGCTGTCAATGCAGGAAGGCAATATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
**
6706 AGGC-AGGTTTGTGTCTTTAACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
6728 TGCTTCGCTGTCAATGAAGGAAGGCAAGATCTGTTGTCTTTAACAAGCTCAATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* *
6793 AGGCAAGGTTTGTGTCTTTGACT
66 AGGCAAGGTTTGTGTCTTCGACC
* *
6816 TGCTTCGCTGTCAATGCAAGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * *
6881 AGGCAGGGCTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * * *
6904 TGATTCGATGTCAATGCAGGAAGGTAAGATTTTTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
6969 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * * *
6992 TGCTTCCCTGTCAATGCAGGAAGGCAGGATCTTTTGTCTTTAATCAGCTCCATCACAAACGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
7057 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * *
7080 TGCTTCGCTGTCAATGCAGGATGGCAAGATCTGTTCTCTTCAACCAGCTCTATCATAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
7145 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
7168 TGCTTCGCTGTCAATGCAGGAAGGCAGGATCTTTTGTCTTCAATCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
7233 AGGCAAGGTTTGT-TCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
7255 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTCTCTTCAGCCAGCTCTATCATAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
7320 AGGTAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
7343 TGCTTCGCTGTCAATTCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
** *
7408 AGATAAGGTTTGTGCCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * * *
7431 TGCTTCGTTGTCAATCCAGGTATGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
7496 AGG-ATAGGTTTGTGTATTCGACC
66 AGGCA-AGGTTTGTGTCTTCGACC
* * *
7519 TGCCTCGCTGTCAATGCAGCAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCCAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
7584 AGGC-AGGTTTGTGTCTTCAACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
7606 TGCTTCGCTGTCAATGAAGGAAGGCAAGATCTGTTGTCTTCAACAAGCTCAATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
7671 AGGCAAGGTTTGTGTCTTTGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
7694 TGCTTCGCTGTCAATGCAGGAAGGCAGGATCTTTTGTCTTCAATCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
7759 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * * *
7782 TGCTTCGCTGTCAATGCAGGATGGCAAGATCTGTTGTCTCCAACCAGATCTATCATAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
7847 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
*
7870 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* *
7935 AGGTAACGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
*
7958 TGCTTCGCTGTCAATGCAGGAACGCAAGATCTGTTTGTCTTCAACCAGCTCCATCACAACCGAGA
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTG-TTGTCTTCAACCAGCTCCATCACAACCGAGA
8023 GAGGCAAGGTTTGTGTCTTCGACC
65 GAGGCAAGGTTTGTGTCTTCGACC
* * * *
8047 TTGCTTCGTCTGTCAATGCAGGAAGGCAAGATCTGCTGTCTTCAACAAGCTCAATCACAACCGGG
1 -TGCTTCG-CTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAG
*
8112 AGAGGCAAGGTTTGTGTCTTTGACC
64 AGAGGCAAGGTTTGTGTCTTCGACC
* *
8137 TGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
8202 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
8225 TGATTCGCTGCCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
8290 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
8313 CGCTTCGCCGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCA-CATCCATCACAACTGAGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TCCATCACAACCGAGA
* * *
8377 GAGGCAAGGTTAGTGTCTTTGACA
65 GAGGCAAGGTTTGTGTCTTCGACC
* * * *
8401 TGGTTCCCTGACAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
8466 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
8489 TGATTCGCTGCCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCGCAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* *
8554 AGGCAAAGTTTGTGTCTTTGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
8577 TGCTTCGCTGTCAATGTAGGAACGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * *
8642 AGGTAAGGTTTGTGTATTCAACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
8665 TGCCTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* *
8730 AGGTAAGGTTTGTGTCTTCAACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * *
8753 TGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCAACAAGCTCAATCACAACCGAAAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
8818 AGGCAAGGTTTGTGTCTTTGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
8841 TGATTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
8906 AGGCAAGGTTTGTGTCTTCGATC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
8929 TGATTTGCTGCCAATGCAGGAAGGCAAGATCT-TCTGTCTTCAACCAGATCCAT
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT-TGTCTTCAACCAGCTCCAT
8982 GTGAAACCTT
Statistics
Matches: 4542, Mismatches: 677, Indels: 60
0.86 0.13 0.01
Matches are distributed among these distances:
85 70 0.02
86 4 0.00
87 241 0.05
88 3686 0.81
89 352 0.08
90 115 0.03
91 74 0.02
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.26
Consensus pattern (88 bp):
TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
AGGCAAGGTTTGTGTCTTCGACC
Found at i:6504 original size:45 final size:45
Alignment explanation
Indices: 6453--6593 Score: 114
Period size: 45 Copynumber: 3.2 Consensus size: 45
6443 GCAAGGTTTG
6453 TGTCTTCGATCTGCTTCGCTGTCAATGCAGGA-AGGCAGGATCTTT
1 TGTCTTCGATCTGCTTCGCTGTCAATGCAGGAGAGGCA-GATCTTT
* * * * * *
6498 TGTCTTCAATCAGC-TC-C-ATCACA-ACCGAGAGAGGCA-ATGTTT
1 TGTCTTCGATCTGCTTCGCTGTCA-ATGCAG-GAGAGGCAGATCTTT
* * *
6540 GTGTCTTCGACCTGCTTCGCTGTCAATGCAGGATACGCAAGATCTTT
1 -TGTCTTCGATCTGCTTCGCTGTCAATGCAGGAGAGGC-AGATCTTT
6587 TGTCTTC
1 TGTCTTC
6594 AACCAGCTCT
Statistics
Matches: 71, Mismatches: 15, Indels: 19
0.68 0.14 0.18
Matches are distributed among these distances:
42 10 0.14
43 15 0.21
44 9 0.13
45 19 0.27
46 13 0.18
47 5 0.07
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.32
Consensus pattern (45 bp):
TGTCTTCGATCTGCTTCGCTGTCAATGCAGGAGAGGCAGATCTTT
Found at i:6547 original size:43 final size:42
Alignment explanation
Indices: 6410--6547 Score: 111
Period size: 44 Copynumber: 3.2 Consensus size: 42
6400 TAAGATTTTT
* *
6410 TGTCTTCAACCAGCTCCATCACAACTGAGGGAGGCAAGGTTTG
1 TGTCTTCAATCAGCTCCATCACAACTGA-GGAGGCAATGTTTG
* * ** *
6453 TGTCTTCGATCTGCTTCGC-TGTCAA-TGCAGGAAGGCAGGATCTTT-
1 TGTCTTCAATCAGC-TC-CATCACAACTG-AGG-AGGCA--ATGTTTG
*
6498 TGTCTTCAATCAGCTCCATCACAACCGAGAGAGGCAATGTTTG
1 TGTCTTCAATCAGCTCCATCACAACTGAG-GAGGCAATGTTTG
6541 TGTCTTC
1 TGTCTTC
6548 GACCTGCTTC
Statistics
Matches: 72, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
42 5 0.07
43 23 0.32
44 25 0.35
45 15 0.21
46 4 0.06
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTCTTCAATCAGCTCCATCACAACTGAGGAGGCAATGTTTG
Found at i:6768 original size:45 final size:44
Alignment explanation
Indices: 6717--6860 Score: 123
Period size: 44 Copynumber: 3.2 Consensus size: 44
6707 GGCAGGTTTG
6717 TGTCTTTAACCTGCTTCGCTGTCAATGAAGGAAGGCAAGATCTGT
1 TGTCTTTAACCTGCTTCGCTGTCAATGAA-GAAGGCAAGATCTGT
** ** ** * * *
6762 TGTCTTTAACAAGC-TCAATCACAACCG-AGAGAGGCAAGGTTTG-
1 TGTCTTTAACCTGCTTCGCTGTCAA-TGAAGA-AGGCAAGATCTGT
* *
6805 TGTCTTTGACTTGCTTCGCTGTCAATGCAAGAAGGCAAGATCTGT
1 TGTCTTTAACCTGCTTCGCTGTCAATG-AAGAAGGCAAGATCTGT
*
6850 TGTCTTCAACC
1 TGTCTTTAACC
6861 AGCTCCATCA
Statistics
Matches: 71, Mismatches: 22, Indels: 12
0.68 0.21 0.11
Matches are distributed among these distances:
43 14 0.20
44 33 0.46
45 24 0.34
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (44 bp):
TGTCTTTAACCTGCTTCGCTGTCAATGAAGAAGGCAAGATCTGT
Found at i:9116 original size:22 final size:22
Alignment explanation
Indices: 9088--9240 Score: 225
Period size: 22 Copynumber: 7.0 Consensus size: 22
9078 TTTATTGTTC
*
9088 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
9110 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
**
9132 AGCCATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
** * * *
9154 AGCCATGAGGGTTTAGTTCGTT
1 AAACATGAGAGCTTAGTACGTT
9176 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
*
9198 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
9220 AAACATGAGAGCTTAGTACGT
1 AAACATGAGAGCTTAGTACGT
9241 ACTATCAACA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 119 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTT
Done.