Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_446 ID=scaffold_446-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6918
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31


Found at i:551 original size:20 final size:20

Alignment explanation


    Indices: 523--591  Score: 66
    Period size: 20  Copynumber: 3.5  Consensus size: 20

        513 ATGCAAACTA

                *    *          
        523 AAATAAGCTTAAGATGAGCT
          1 AAATGAGCTAAAGATGAGCT

                        *       
        543 AAATGAGCTAAAAATGAGCT
          1 AAATGAGCTAAAGATGAGCT

            ***          *      
        563 CGTTGAGCTAAAGTTGAGCT
          1 AAATGAGCTAAAGATGAGCT

            *        
        583 GAATGAGCT
          1 AAATGAGCT

        592 TGAAGTAGAG


Statistics
Matches: 38,  Mismatches: 11, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  20   38  1.00

ACGTcount: A:0.39, C:0.12, G:0.25, T:0.25


Consensus pattern (20 bp):   
AAATGAGCTAAAGATGAGCT
Done.