Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_455 ID=scaffold_455-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7290
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.29

Warning! 503 characters in sequence are not A, C, G, or T


Found at i:4007 original size:15 final size:15

Alignment explanation


    Indices: 3984--4048  Score: 67
    Period size: 15  Copynumber: 4.1  Consensus size: 15

       3974 GAAATGTAGA

                           
       3984 AACAATAATAATAAT
          1 AACAATAATAATAAT

                *          
       3999 AACATTAATAATAAT
          1 AACAATAATAATAAT

             *      *  *   
       4014 AGCAATAAAAACAAT
          1 AACAATAATAATAAT

                              
       4029 GAACTAAATAATAATAAT
          1 -AAC--AATAATAATAAT

              
       4047 AA
          1 AA

       4049 AAAAGGGACT


Statistics
Matches: 39,  Mismatches: 8, Indels: 4
        0.76            0.16        0.08

Matches are distributed among these distances:
  15   25  0.64
  16    2  0.05
  17    2  0.05
  18   10  0.26

ACGTcount: A:0.65, C:0.08, G:0.03, T:0.25


Consensus pattern (15 bp):   
AACAATAATAATAAT
Done.