Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_459 ID=scaffold_459-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6765
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34


Found at i:6199 original size:21 final size:21

Alignment explanation


    Indices: 6175--6216  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       6165 AACATGGTTG

                                 
       6175 ATGATTATGTGTTAGGCTTTT
          1 ATGATTATGTGTTAGGCTTTT

                                 
       6196 ATGATTATGTGTTAGGCTTTT
          1 ATGATTATGTGTTAGGCTTTT

       6217 GGGCCAAAAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.19, C:0.05, G:0.24, T:0.52


Consensus pattern (21 bp):   
ATGATTATGTGTTAGGCTTTT
Done.