Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_464 ID=scaffold_464-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7208
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.33

Warning! 457 characters in sequence are not A, C, G, or T


Found at i:2021 original size:44 final size:43

Alignment explanation


    Indices: 1944--2065  Score: 142
    Period size: 42  Copynumber: 2.8  Consensus size: 43

       1934 TTCCGATATG

                *    *                  *        *  *   
       1944 TGATATCGTATAAGACCATGTCTGGGACGTTGGCATTGGTTTGA
          1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATTCGTAT-A

                                                        
       1988 -GATTTACGTGTAAGACCATGTCTGGGACATTGGCA-TCGTATA
          1 TGATTT-CGTGTAAGACCATGTCTGGGACATTGGCATTCGTATA

                                          *      
       2030 TGATTTCGTGTAAGACTC-TGTCTGGGACAGTGGCAT
          1 TGATTTCGTGTAAGAC-CATGTCTGGGACATTGGCAT

       2066 AATTATTTGA


Statistics
Matches: 68,  Mismatches: 6, Indels: 9
        0.82            0.07        0.11

Matches are distributed among these distances:
  42   27  0.40
  43   14  0.21
  44   27  0.40

ACGTcount: A:0.23, C:0.16, G:0.29, T:0.33


Consensus pattern (43 bp):   
TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATTCGTATA

Done.