Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_472 ID=scaffold_472-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6656
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32


Found at i:1002 original size:3 final size:3

Alignment explanation


    Indices: 994--1021  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

        984 AATGGTGTTG

                                                 
        994 ATC ATC ATC ATC ATC ATC ATC ATC ATC A
          1 ATC ATC ATC ATC ATC ATC ATC ATC ATC A

       1022 GATATGTTAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32


Consensus pattern (3 bp):   
ATC

Found at i:1576 original size:3 final size:3

Alignment explanation


    Indices: 1568--1610  Score: 86
    Period size: 3  Copynumber: 14.3  Consensus size: 3

       1558 CTCTTATATC

                                                                     
       1568 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A

       1611 ATTTTAGGTA


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   40  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
ATA

Done.